sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | ncbi-tools6 6.1.20170106+dfsg1-9 (armhf) Thu, 01 Apr 2021 01:05:07 +0000 | +==============================================================================+ Package: ncbi-tools6 Version: 6.1.20170106+dfsg1-9 Source Version: 6.1.20170106+dfsg1-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-aa955b67-9047-4697-8893-b00eb4c4503f' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-tools6-xMPQCH/resolver-o7FAPX' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [154 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-03-31-2000.27-F-2021-03-31-0800.29.pdiff [3475 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-03-31-2000.27-F-2021-03-31-0800.29.pdiff [12.0 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-03-31-2000.27-F-2021-03-31-0800.29.pdiff [3475 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-03-31-2000.27-F-2021-03-31-0800.29.pdiff [12.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8345 kB] Fetched 8641 kB in 4s (2197 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'ncbi-tools6' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ncbi-tools6.git Please use: git clone https://salsa.debian.org/med-team/ncbi-tools6.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 59.8 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main ncbi-tools6 6.1.20170106+dfsg1-9 (dsc) [2757 B] Get:2 http://debian.oregonstate.edu/debian unstable/main ncbi-tools6 6.1.20170106+dfsg1-9 (tar) [58.3 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main ncbi-tools6 6.1.20170106+dfsg1-9 (diff) [1513 kB] Fetched 59.8 MB in 1s (112 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/ncbi-tools6-xMPQCH/ncbi-tools6-6.1.20170106+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-tools6-xMPQCH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf, csh | c-shell, libglu1-mesa-dev | libglu-dev, libgnutls28-dev | gnutls-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev Filtered Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf, csh, libglu1-mesa-dev, libgnutls28-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [463 B] Get:5 copy:/<>/apt_archive ./ Packages [529 B] Fetched 1949 B in 0s (79.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf csh debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli-dev:armhf libbrotli1 libbrotli1:armhf libbsd0 libbsd0:armhf libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libdrm-amdgpu1:armhf libdrm-common libdrm-nouveau2:armhf libdrm-radeon1:armhf libdrm2:armhf libedit2:armhf libegl-dev:armhf libegl-mesa0:armhf libegl1:armhf libelf1 libelf1:armhf libevent-2.1-7:armhf libexpat1 libexpat1:armhf libexpat1-dev:armhf libffi7:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:armhf libfontconfig1 libfontconfig1:armhf libfontconfig1-dev:armhf libfreetype-dev:armhf libfreetype6 libfreetype6:armhf libfreetype6-dev:armhf libgbm1:armhf libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgl-dev:armhf libgl1:armhf libgl1-mesa-dev:armhf libgl1-mesa-dri:armhf libglapi-mesa:armhf libgles-dev:armhf libgles1:armhf libgles2:armhf libglib2.0-0 libglu1-mesa:armhf libglu1-mesa-dev:armhf libglvnd-dev:armhf libglvnd0:armhf libglx-dev:armhf libglx-mesa0:armhf libglx0:armhf libgmp-dev:armhf libgmp10:armhf libgmpxx4ldbl:armhf libgnutls-dane0:armhf libgnutls-openssl27:armhf libgnutls28-dev:armhf libgnutls30:armhf libgnutlsxx28:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf libice-dev:armhf libice6 libice6:armhf libicu67 libidn2-0:armhf libidn2-dev:armhf libio-string-perl libjpeg62-turbo libjpeg62-turbo:armhf libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libllvm11:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libmd0 libmd0:armhf libmotif-common libmotif-dev:armhf libmrm4 libmrm4:armhf libnettle8:armhf libnsl-dev libnsl-dev:armhf libnsl2:armhf libopengl-dev:armhf libopengl0:armhf libp11-kit-dev:armhf libp11-kit0:armhf libpcre16-3:armhf libpcre3:armhf libpcre3-dev:armhf libpcre32-3:armhf libpcrecpp0v5:armhf libperl5.32 libpipeline1 libpng-dev:armhf libpng16-16 libpng16-16:armhf libpthread-stubs0-dev libpthread-stubs0-dev:armhf libsensors-config libsensors5:armhf libsigsegv2 libsm-dev:armhf libsm6 libsm6:armhf libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtasn1-6-dev:armhf libtinfo6:armhf libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libuil4 libuil4:armhf libunbound8:armhf libunistring2:armhf libuuid1:armhf libvulkan1:armhf libwayland-client0:armhf libwayland-server0:armhf libx11-6 libx11-6:armhf libx11-data libx11-dev libx11-dev:armhf libx11-xcb1:armhf libxau-dev libxau-dev:armhf libxau6 libxau6:armhf libxcb-dri2-0:armhf libxcb-dri3-0:armhf libxcb-glx0:armhf libxcb-present0:armhf libxcb-shm0:armhf libxcb-sync1:armhf libxcb-xfixes0:armhf libxcb1 libxcb1:armhf libxcb1-dev libxcb1-dev:armhf libxdamage1:armhf libxdmcp-dev libxdmcp-dev:armhf libxdmcp6 libxdmcp6:armhf libxext-dev:armhf libxext6 libxext6:armhf libxfixes3:armhf libxft-dev:armhf libxft2 libxft2:armhf libxm4 libxm4:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu-dev:armhf libxmu-headers libxmu6 libxmu6:armhf libxrender-dev:armhf libxrender1 libxrender1:armhf libxshmfence1:armhf libxt-dev:armhf libxt6 libxt6:armhf libxxf86vm1:armhf libyaml-perl libz3-4:armhf libzstd1:armhf linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db nettle-dev:armhf perl perl-modules-5.32 pkg-config po-debconf sensible-utils ucf uil uuid-dev:armhf x11-common x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf glibc-doc manpages-dev:armhf gnupg git bzr freetype2-doc:armhf gmp-doc:armhf libgmp10-doc:armhf libmpfr-dev:armhf dns-root-data:armhf gnutls-bin:armhf gnutls-doc:armhf krb5-doc:armhf krb5-user:armhf libice-doc:armhf lm-sensors lm-sensors:armhf libsm-doc:armhf libstdc++-10-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libx11-doc:armhf libxcb-doc libxcb-doc:armhf libxext-doc:armhf libxt-doc:armhf libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libnss-nis:armhf libnss-nisplus:armhf libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:armhf libpng-tools:armhf libtasn1-doc:armhf libltdl-dev uuid-runtime:armhf mesa-vulkan-drivers:armhf | vulkan-icd:armhf libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf csh debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli-dev:armhf libbrotli1 libbrotli1:armhf libbsd0 libbsd0:armhf libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libdrm-amdgpu1:armhf libdrm-common libdrm-nouveau2:armhf libdrm-radeon1:armhf libdrm2:armhf libedit2:armhf libegl-dev:armhf libegl-mesa0:armhf libegl1:armhf libelf1 libelf1:armhf libevent-2.1-7:armhf libexpat1 libexpat1:armhf libexpat1-dev:armhf libffi7:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:armhf libfontconfig1 libfontconfig1:armhf libfontconfig1-dev:armhf libfreetype-dev:armhf libfreetype6 libfreetype6:armhf libfreetype6-dev:armhf libgbm1:armhf libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgl-dev:armhf libgl1:armhf libgl1-mesa-dev:armhf libgl1-mesa-dri:armhf libglapi-mesa:armhf libgles-dev:armhf libgles1:armhf libgles2:armhf libglib2.0-0 libglu1-mesa:armhf libglu1-mesa-dev:armhf libglvnd-dev:armhf libglvnd0:armhf libglx-dev:armhf libglx-mesa0:armhf libglx0:armhf libgmp-dev:armhf libgmp10:armhf libgmpxx4ldbl:armhf libgnutls-dane0:armhf libgnutls-openssl27:armhf libgnutls28-dev:armhf libgnutls30:armhf libgnutlsxx28:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf libice-dev:armhf libice6 libice6:armhf libicu67 libidn2-0:armhf libidn2-dev:armhf libio-string-perl libjpeg62-turbo libjpeg62-turbo:armhf libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libllvm11:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libmd0 libmd0:armhf libmotif-common libmotif-dev:armhf libmrm4 libmrm4:armhf libnettle8:armhf libnsl-dev libnsl-dev:armhf libnsl2:armhf libopengl-dev:armhf libopengl0:armhf libp11-kit-dev:armhf libp11-kit0:armhf libpcre16-3:armhf libpcre3:armhf libpcre3-dev:armhf libpcre32-3:armhf libpcrecpp0v5:armhf libperl5.32 libpipeline1 libpng-dev:armhf libpng16-16 libpng16-16:armhf libpthread-stubs0-dev libpthread-stubs0-dev:armhf libsensors-config libsensors5:armhf libsigsegv2 libsm-dev:armhf libsm6 libsm6:armhf libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtasn1-6-dev:armhf libtinfo6:armhf libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libuil4 libuil4:armhf libunbound8:armhf libunistring2:armhf libuuid1:armhf libvulkan1:armhf libwayland-client0:armhf libwayland-server0:armhf libx11-6 libx11-6:armhf libx11-data libx11-dev libx11-dev:armhf libx11-xcb1:armhf libxau-dev libxau-dev:armhf libxau6 libxau6:armhf libxcb-dri2-0:armhf libxcb-dri3-0:armhf libxcb-glx0:armhf libxcb-present0:armhf libxcb-shm0:armhf libxcb-sync1:armhf libxcb-xfixes0:armhf libxcb1 libxcb1:armhf libxcb1-dev libxcb1-dev:armhf libxdamage1:armhf libxdmcp-dev libxdmcp-dev:armhf libxdmcp6 libxdmcp6:armhf libxext-dev:armhf libxext6 libxext6:armhf libxfixes3:armhf libxft-dev:armhf libxft2 libxft2:armhf libxm4 libxm4:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu-dev:armhf libxmu-headers libxmu6 libxmu6:armhf libxrender-dev:armhf libxrender1 libxrender1:armhf libxshmfence1:armhf libxt-dev:armhf libxt6 libxt6:armhf libxxf86vm1:armhf libyaml-perl libz3-4:armhf libzstd1:armhf linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db nettle-dev:armhf perl perl-modules-5.32 pkg-config po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf uil uuid-dev:armhf x11-common x11proto-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 270 newly installed, 0 to remove and 0 not upgraded. Need to get 273 MB of archives. After this operation, 1093 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-7 [145 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-3 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-3 [4110 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-3 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+22 [252 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmotif-common all 2.3.8-3 [40.5 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.7.0-2 [310 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.7.0-2 [771 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxm4 amd64 2.3.8-3 [1034 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libmrm4 amd64 2.3.8-3 [88.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main armhf gcc-10-base armhf 10.2.1-6 [201 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 10.2.1-6 [36.2 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.18-2 [95.2 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.31-10 [2330 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main armhf libxcb1 armhf 1.14-3 [136 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main armhf libx11-6 armhf 2:1.7.0-2 [712 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-2 [85.4 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main armhf libuuid1 armhf 2.36.1-7 [82.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main armhf libxft2 armhf 2.3.2-2 [50.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main armhf libxt6 armhf 1:1.2.0-1 [161 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main armhf libxm4 armhf 2.3.8-3 [854 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main armhf libmrm4 armhf 2.3.8-3 [82.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libuil4 amd64 2.3.8-3 [158 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main armhf libuil4 armhf 2.3.8-3 [138 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.3.0-22 [198 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.35.2-2 [2781 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.18-2 [104 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-10 [2344 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.7.1 [1537 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.7.1 [2149 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf-base amd64 10.2.1-6cross1 [202 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-arm-linux-gnueabihf amd64 10.2.1-6cross1 [44.1 MB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:10.2.1-1 [16.8 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.17 [31.4 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-6cross1 [197 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.31-9cross4 [1094 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armhf-cross all 10.2.1-6cross1 [36.3 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 10.2.1-6cross1 [82.6 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 10.2.1-6cross1 [6688 B] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armhf-cross all 10.2.1-6cross1 [2010 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 10.2.1-6cross1 [381 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 10.2.1-6cross1 [745 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-armhf-cross all 10.2.1-6cross1 [694 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf amd64 10.2.1-6cross1 [50.4 MB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:10.2.1-1 [1468 B] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.10.13-1cross4 [1365 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.31-9cross4 [1845 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-armhf-cross all 10.2.1-6cross1 [1760 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-arm-linux-gnueabihf amd64 10.2.1-6cross1 [47.1 MB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:10.2.1-1 [1184 B] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-6 [8625 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.17 [30.4 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.17 [41.4 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.9 [6708 B] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 csh amd64 20110502-6 [243 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.183-3 [165 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.4 [1049 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.3.0-22 [370 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 10.2.1-6 [6924 B] Get:142 http://debian.oregonstate.edu/debian unstable/main armhf libbrotli-dev armhf 1.0.9-2+b2 [270 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.10.26-1 [1281 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.18-2 [113 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main armhf libcom-err2 armhf 1.46.2-1 [73.2 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5support0 armhf 1.18.3-4 [62.3 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main armhf libk5crypto3 armhf 1.18.3-4 [110 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main armhf libkeyutils1 armhf 1.6.1-2 [14.4 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main armhf libssl1.1 armhf 1.1.1k-1 [1309 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5-3 armhf 1.18.3-4 [319 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [143 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc3 armhf 1.3.1-1 [72.1 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc-dev armhf 1.3.1-1 [182 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.31-10 [1875 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.104-1 [14.9 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main armhf libdrm2 armhf 2.4.104-1 [37.7 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-amdgpu1 armhf 2.4.104-1 [27.1 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-nouveau2 armhf 2.4.104-1 [24.6 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main armhf libdrm-radeon1 armhf 2.4.104-1 [27.6 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main armhf libtinfo6 armhf 6.2+20201114-2 [328 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main armhf libedit2 armhf 3.1-20191231-2+b1 [81.1 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main armhf libglvnd0 armhf 1.3.2-1 [51.8 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main armhf libffi7 armhf 3.3-6 [19.9 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main armhf libwayland-server0 armhf 1.19.0-2 [28.2 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main armhf libgbm1 armhf 20.3.5-1 [70.1 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main armhf libglapi-mesa armhf 20.3.5-1 [80.2 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main armhf libwayland-client0 armhf 1.19.0-2 [22.2 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main armhf libx11-xcb1 armhf 2:1.7.0-2 [203 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-present0 armhf 1.14-3 [101 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-sync1 armhf 1.14-3 [104 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get:177 http://debian.oregonstate.edu/debian unstable/main armhf libegl-mesa0 armhf 20.3.5-1 [123 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main armhf libegl1 armhf 1.3.2-1 [29.5 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-glx0 armhf 1.14-3 [116 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main armhf libxcb-shm0 armhf 1.14-3 [101 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main armhf libxdamage1 armhf 1:1.1.5-2 [15.1 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main armhf libxfixes3 armhf 1:5.0.3-2 [20.6 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main armhf libelf1 armhf 0.183-3 [161 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 10.2.1-6 [421 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main armhf libz3-4 armhf 4.8.10-1 [5959 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main armhf libllvm11 armhf 1:11.0.1-2 [15.4 MB] Get:188 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main armhf libvulkan1 armhf 1.2.162.0-1 [84.3 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main armhf libzstd1 armhf 1.4.8+dfsg-2.1 [272 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main armhf libgl1-mesa-dri armhf 20.3.5-1 [6037 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main armhf libglx-mesa0 armhf 20.3.5-1 [167 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main armhf libglx0 armhf 1.3.2-1 [32.8 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main armhf libgl1 armhf 1.3.2-1 [94.3 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2020.1-1 [594 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get:202 http://debian.oregonstate.edu/debian unstable/main armhf libxcb1-dev armhf 1.14-3 [175 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main armhf libx11-dev armhf 2:1.7.0-2 [784 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main armhf libglx-dev armhf 1.3.2-1 [16.3 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main armhf libgl-dev armhf 1.3.2-1 [100 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main armhf libegl-dev armhf 1.3.2-1 [19.6 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main armhf libevent-2.1-7 armhf 2.1.12-stable-1 [169 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main armhf libexpat1-dev armhf 2.2.10-2 [123 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main armhf libpng-dev armhf 1.6.37-3 [282 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main armhf libfreetype-dev armhf 2.10.4+dfsg-1 [516 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main armhf libfreetype6-dev armhf 2.10.4+dfsg-1 [82.4 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main armhf uuid-dev armhf 2.36.1-7 [97.9 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main armhf libfontconfig-dev armhf 2.13.1-4.2 [353 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main armhf libfontconfig1-dev armhf 2.13.1-4.2 [238 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 10.2.1-6 [84.7 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 10.2.1-6 [746 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.3.0-22 [663 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main armhf libgles1 armhf 1.3.2-1 [12.6 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main armhf libgles2 armhf 1.3.2-1 [18.2 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main armhf libgles-dev armhf 1.3.2-1 [50.3 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main armhf libopengl0 armhf 1.3.2-1 [32.7 kB] Get:225 http://debian.oregonstate.edu/debian unstable/main armhf libopengl-dev armhf 1.3.2-1 [5876 B] Get:226 http://debian.oregonstate.edu/debian unstable/main armhf libglvnd-dev armhf 1.3.2-1 [13.9 kB] Get:227 http://debian.oregonstate.edu/debian unstable/main armhf libgl1-mesa-dev armhf 20.3.5-1 [51.1 kB] Get:228 http://debian.oregonstate.edu/debian unstable/main armhf libglu1-mesa armhf 9.0.1-1 [130 kB] Get:229 http://debian.oregonstate.edu/debian unstable/main armhf libglu1-mesa-dev armhf 9.0.1-1 [171 kB] Get:230 http://debian.oregonstate.edu/debian unstable/main armhf libgmp10 armhf 2:6.2.1+dfsg-1 [516 kB] Get:231 http://debian.oregonstate.edu/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.2.1+dfsg-1 [336 kB] Get:232 http://debian.oregonstate.edu/debian unstable/main armhf libgmp-dev armhf 2:6.2.1+dfsg-1 [593 kB] Get:233 http://debian.oregonstate.edu/debian unstable/main armhf libnettle8 armhf 3.7-2.1 [281 kB] Get:234 http://debian.oregonstate.edu/debian unstable/main armhf libhogweed6 armhf 3.7-2.1 [307 kB] Get:235 http://debian.oregonstate.edu/debian unstable/main armhf libunistring2 armhf 0.9.10-4 [374 kB] Get:236 http://debian.oregonstate.edu/debian unstable/main armhf libidn2-0 armhf 2.3.0-5 [83.4 kB] Get:237 http://debian.oregonstate.edu/debian unstable/main armhf libp11-kit0 armhf 0.23.22-1 [317 kB] Get:238 http://debian.oregonstate.edu/debian unstable/main armhf libtasn1-6 armhf 4.16.0-2 [50.2 kB] Get:239 http://debian.oregonstate.edu/debian unstable/main armhf libgnutls30 armhf 3.7.1-3 [1279 kB] Get:240 http://debian.oregonstate.edu/debian unstable/main armhf libunbound8 armhf 1.13.1-1 [451 kB] Get:241 http://debian.oregonstate.edu/debian unstable/main armhf libgnutls-dane0 armhf 3.7.1-3 [390 kB] Get:242 http://debian.oregonstate.edu/debian unstable/main armhf libgnutls-openssl27 armhf 3.7.1-3 [390 kB] Get:243 http://debian.oregonstate.edu/debian unstable/main armhf libgnutlsxx28 armhf 3.7.1-3 [12.2 kB] Get:244 http://debian.oregonstate.edu/debian unstable/main armhf libidn2-dev armhf 2.3.0-5 [84.6 kB] Get:245 http://debian.oregonstate.edu/debian unstable/main armhf libp11-kit-dev armhf 0.23.22-1 [214 kB] Get:246 http://debian.oregonstate.edu/debian unstable/main armhf libtasn1-6-dev armhf 4.16.0-2 [99.4 kB] Get:247 http://debian.oregonstate.edu/debian unstable/main armhf nettle-dev armhf 3.7-2.1 [1265 kB] Get:248 http://debian.oregonstate.edu/debian unstable/main armhf libgnutls28-dev armhf 3.7.1-3 [1258 kB] Get:249 http://debian.oregonstate.edu/debian unstable/main armhf libice-dev armhf 2:1.0.10-1 [61.9 kB] Get:250 http://debian.oregonstate.edu/debian unstable/main armhf libxrender-dev armhf 1:0.9.10-1 [37.8 kB] Get:251 http://debian.oregonstate.edu/debian unstable/main armhf libxft-dev armhf 2.3.2-2 [62.3 kB] Get:252 http://debian.oregonstate.edu/debian unstable/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB] Get:253 http://debian.oregonstate.edu/debian unstable/main armhf libxt-dev armhf 1:1.2.0-1 [388 kB] Get:254 http://debian.oregonstate.edu/debian unstable/main amd64 uil amd64 2.3.8-3 [38.8 kB] Get:255 http://debian.oregonstate.edu/debian unstable/main armhf libmotif-dev armhf 2.3.8-3 [2322 kB] Get:256 http://debian.oregonstate.edu/debian unstable/main armhf libpcre16-3 armhf 2:8.39-13 [239 kB] Get:257 http://debian.oregonstate.edu/debian unstable/main armhf libpcre3 armhf 2:8.39-13 [322 kB] Get:258 http://debian.oregonstate.edu/debian unstable/main armhf libpcre32-3 armhf 2:8.39-13 [231 kB] Get:259 http://debian.oregonstate.edu/debian unstable/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB] Get:260 http://debian.oregonstate.edu/debian unstable/main armhf libpcre3-dev armhf 2:8.39-13 [587 kB] Get:261 http://debian.oregonstate.edu/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get:262 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.3.0-22 [1762 kB] Get:263 http://debian.oregonstate.edu/debian unstable/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get:264 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:265 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1-dev amd64 1.14-3 [176 kB] Get:266 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-dev amd64 2:1.7.0-2 [842 kB] Get:267 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2020.1-1 [3404 B] Get:268 http://debian.oregonstate.edu/debian unstable/main armhf libxext-dev armhf 2:1.3.3-1.1 [103 kB] Get:269 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu-headers all 2:1.1.2-2 [51.9 kB] Get:270 http://debian.oregonstate.edu/debian unstable/main armhf libxmu-dev armhf 2:1.1.2-2+b3 [59.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 273 MB in 3s (104 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10482 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_amd64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../5-perl-modules-5.32_5.32.1-3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-3) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../6-libperl5.32_5.32.1-3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-3) ... Selecting previously unselected package perl. Preparing to unpack .../7-perl_5.32.1-3_amd64.deb ... Unpacking perl (5.32.1-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../8-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../9-x11-common_1%3a7.7+22_all.deb ... Unpacking x11-common (1:7.7+22) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Selecting previously unselected package libmotif-common. (Reading database ... 13057 files and directories currently installed.) Preparing to unpack .../000-libmotif-common_2.3.8-3_all.deb ... Unpacking libmotif-common (2.3.8-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../001-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../002-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../003-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../004-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../005-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../006-libx11-data_2%3a1.7.0-2_all.deb ... Unpacking libx11-data (2:1.7.0-2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../007-libx11-6_2%3a1.7.0-2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.0-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../008-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../009-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../010-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../011-libfreetype6_2.10.4+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../012-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../014-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../015-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../016-libfontconfig1_2.13.1-4.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../017-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../018-libxext6_2%3a1.3.3-1.1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1.1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../019-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../020-libxft2_2.3.2-2_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-2) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../021-libice6_2%3a1.0.10-1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.10-1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../022-libsm6_2%3a1.2.3-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.3-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../023-libxt6_1%3a1.2.0-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.2.0-1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../024-libxmu6_2%3a1.1.2-2+b3_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-2+b3) ... 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Unpacking libexpat1:armhf (2.2.10-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../038-libbrotli1_1.0.9-2+b2_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b2) ... Selecting previously unselected package zlib1g:armhf. Preparing to unpack .../039-zlib1g_1%3a1.2.11.dfsg-2_armhf.deb ... Unpacking zlib1g:armhf (1:1.2.11.dfsg-2) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../040-libpng16-16_1.6.37-3_armhf.deb ... Unpacking libpng16-16:armhf (1.6.37-3) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../041-libfreetype6_2.10.4+dfsg-1_armhf.deb ... Unpacking libfreetype6:armhf (2.10.4+dfsg-1) ... Selecting previously unselected package libuuid1:armhf. Preparing to unpack .../042-libuuid1_2.36.1-7_armhf.deb ... Unpacking libuuid1:armhf (2.36.1-7) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../043-libfontconfig1_2.13.1-4.2_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.1-4.2) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../044-libjpeg62-turbo_1%3a2.0.6-4_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.0.6-4) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../045-libxext6_2%3a1.3.3-1.1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.3-1.1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../046-libxrender1_1%3a0.9.10-1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../047-libxft2_2.3.2-2_armhf.deb ... Unpacking libxft2:armhf (2.3.2-2) ... Selecting previously unselected package libice6:armhf. Preparing to unpack .../048-libice6_2%3a1.0.10-1_armhf.deb ... Unpacking libice6:armhf (2:1.0.10-1) ... Selecting previously unselected package libsm6:armhf. Preparing to unpack .../049-libsm6_2%3a1.2.3-1_armhf.deb ... Unpacking libsm6:armhf (2:1.2.3-1) ... Selecting previously unselected package libxt6:armhf. Preparing to unpack .../050-libxt6_1%3a1.2.0-1_armhf.deb ... Unpacking libxt6:armhf (1:1.2.0-1) ... Selecting previously unselected package libxmu6:armhf. Preparing to unpack .../051-libxmu6_2%3a1.1.2-2+b3_armhf.deb ... Unpacking libxmu6:armhf (2:1.1.2-2+b3) ... Selecting previously unselected package libxm4:armhf. Preparing to unpack .../052-libxm4_2.3.8-3_armhf.deb ... Unpacking libxm4:armhf (2.3.8-3) ... Selecting previously unselected package libmrm4:armhf. Preparing to unpack .../053-libmrm4_2.3.8-3_armhf.deb ... Unpacking libmrm4:armhf (2.3.8-3) ... Selecting previously unselected package libuil4:amd64. Preparing to unpack .../054-libuil4_2.3.8-3_amd64.deb ... Unpacking libuil4:amd64 (2.3.8-3) ... Selecting previously unselected package libuil4:armhf. Preparing to unpack .../055-libuil4_2.3.8-3_armhf.deb ... Unpacking libuil4:armhf (2.3.8-3) ... Selecting previously unselected package gcc-9-base:armhf. Preparing to unpack .../056-gcc-9-base_9.3.0-22_armhf.deb ... Unpacking gcc-9-base:armhf (9.3.0-22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../057-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../058-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../059-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../060-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../061-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... 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Setting up autopoint (0.21-4) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libperl5.32:amd64 (5.32.1-3) ... Setting up gcc-10-cross-base (10.2.1-6cross1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.18-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-10) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up binutils-arm-linux-gnueabihf (2.35.2-2) ... Setting up libdrm-common (2.4.104-1) ... Setting up libelf1:amd64 (0.183-3) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-10-arm-linux-gnueabihf-base:amd64 (10.2.1-6cross1) ... Setting up gcc-9-base:armhf (9.3.0-22) ... Setting up libgomp1-armhf-cross (10.2.1-6cross1) ... Setting up x11proto-dev (2020.1-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up g++-10 (10.2.1-6) ... Setting up libxau-dev:amd64 (1:1.0.9-1) ... Setting up csh (20110502-6) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode Setting up libtool (2.4.6-15) ... Setting up libgcc-s1-armhf-cross (10.2.1-6cross1) ... Setting up libc6-dev-armhf-cross (2.31-9cross4) ... Setting up m4 (1.4.18-5) ... Setting up libatomic1-armhf-cross (10.2.1-6cross1) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up perl (5.32.1-3) ... Setting up libstdc++6-armhf-cross (10.2.1-6cross1) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1) ... Setting up libasan6-armhf-cross (10.2.1-6cross1) ... Setting up cpp-10-arm-linux-gnueabihf (10.2.1-6cross1) ... Setting up libubsan1-armhf-cross (10.2.1-6cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.7.1) ... Setting up autoconf (2.69-14) ... Setting up x11proto-xext-dev (2020.1-1) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.7.0-2) ... Setting up libgcc-10-dev-armhf-cross (10.2.1-6cross1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up cpp-arm-linux-gnueabihf (4:10.2.1-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up libxcb1-dev:amd64 (1.14-3) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up gcc-10-arm-linux-gnueabihf (10.2.1-6cross1) ... Setting up libstdc++-10-dev-armhf-cross (10.2.1-6cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libx11-dev:amd64 (2:1.7.0-2) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.7.1) ... Setting up g++-10-arm-linux-gnueabihf (10.2.1-6cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up pkg-config (0.29.2-1) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up build-essential (12.9) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up gcc-arm-linux-gnueabihf (4:10.2.1-1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up g++-arm-linux-gnueabihf (4:10.2.1-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libxmu-headers (2:1.1.2-2) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up libxm4:amd64 (2.3.8-3) ... Setting up debhelper (13.3.4) ... Setting up libmrm4:amd64 (2.3.8-3) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libuil4:amd64 (2.3.8-3) ... Setting up uil (2.3.8-3) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.17) ... Setting up dpkg-cross (2.6.17) ... Setting up crossbuild-essential-armhf (12.9) ... Setting up libcrypt1:armhf (1:4.4.18-2) ... Setting up libgcc-s1:armhf (10.2.1-6) ... Setting up libc6:armhf (2.31-10) ... Setting up libdrm2:armhf (2.4.104-1) ... Setting up libmd0:armhf (1.0.3-3) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up libcrypt-dev:armhf (1:4.4.18-2) ... Setting up libtasn1-6:armhf (4.16.0-2) ... Setting up libtasn1-6-dev:armhf (4.16.0-2) ... Setting up libbsd0:armhf (0.11.3-1) ... Setting up libstdc++6:armhf (10.2.1-6) ... Setting up libtinfo6:armhf (6.2+20201114-2) ... Setting up libdrm-amdgpu1:armhf (2.4.104-1) ... Setting up libexpat1:armhf (2.2.10-2) ... Setting up libzstd1:armhf (1.4.8+dfsg-2.1) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libkeyutils1:armhf (1.6.1-2) ... Setting up libdrm-nouveau2:armhf (2.4.104-1) ... Setting up libxcb1:armhf (1.14-3) ... Setting up libxcb-xfixes0:armhf (1.14-3) ... Setting up libxau-dev:armhf (1:1.0.9-1) ... Setting up libpcre16-3:armhf (2:8.39-13) ... Setting up libice-dev:armhf (2:1.0.10-1) ... Setting up libdrm-radeon1:armhf (2.4.104-1) ... Setting up libglvnd0:armhf (1.3.2-1) ... Setting up libssl1.1:armhf (1.1.1k-1) ... Setting up libxcb-glx0:armhf (1.14-3) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up libedit2:armhf (3.1-20191231-2+b1) ... Setting up libffi7:armhf (3.3-6) ... Setting up libunistring2:armhf (0.9.10-4) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-2) ... Setting up libidn2-0:armhf (2.3.0-5) ... Setting up libxcb-shm0:armhf (1.14-3) ... Setting up libcom-err2:armhf (1.46.2-1) ... Setting up libgomp1:armhf (10.2.1-6) ... Setting up libopengl0:armhf (1.3.2-1) ... Setting up libkrb5support0:armhf (1.18.3-4) ... Setting up libxcb-present0:armhf (1.14-3) ... Setting up libasan5:armhf (9.3.0-22) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libpcre3:armhf (2:8.39-13) ... Setting up libz3-4:armhf (4.8.10-1) ... Setting up libllvm11:armhf (1:11.0.1-2) ... Setting up libgles2:armhf (1.3.2-1) ... Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ... Setting up libnettle8:armhf (3.7-2.1) ... Setting up libxcb-sync1:armhf (1.14-3) ... Setting up libgmp10:armhf (2:6.2.1+dfsg-1) ... Setting up libgles1:armhf (1.3.2-1) ... Setting up libp11-kit0:armhf (0.23.22-1) ... Setting up libpng16-16:armhf (1.6.37-3) ... Setting up libpcre32-3:armhf (2:8.39-13) ... Setting up libatomic1:armhf (10.2.1-6) ... Setting up libuuid1:armhf (2.36.1-7) ... Setting up libevent-2.1-7:armhf (2.1.12-stable-1) ... Setting up libsensors5:armhf (1:3.6.0-7) ... Setting up libk5crypto3:armhf (1.18.3-4) ... Setting up libidn2-dev:armhf (2.3.0-5) ... Setting up libglapi-mesa:armhf (20.3.5-1) ... Setting up libvulkan1:armhf (1.2.162.0-1) ... Setting up libubsan1:armhf (10.2.1-6) ... Setting up libxcb-dri2-0:armhf (1.14-3) ... Setting up libx11-6:armhf (2:1.7.0-2) ... Setting up libkrb5-3:armhf (1.18.3-4) ... Setting up libopengl-dev:armhf (1.3.2-1) ... Setting up libelf1:armhf (0.183-3) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libbrotli-dev:armhf (1.0.9-2+b2) ... Setting up libp11-kit-dev:armhf (0.23.22-1) ... Setting up libwayland-client0:armhf (1.19.0-2) ... Setting up libpcrecpp0v5:armhf (2:8.39-13) ... Setting up libxcb-dri3-0:armhf (1.14-3) ... Setting up libwayland-server0:armhf (1.19.0-2) ... Setting up libx11-xcb1:armhf (2:1.7.0-2) ... Setting up libhogweed6:armhf (3.7-2.1) ... Setting up libxdamage1:armhf (1:1.1.5-2) ... Setting up libxcb1-dev:armhf (1.14-3) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libgbm1:armhf (20.3.5-1) ... Setting up libsm-dev:armhf (2:1.2.3-1) ... Setting up libgl1-mesa-dri:armhf (20.3.5-1) ... Setting up libx11-dev:armhf (2:1.7.0-2) ... Setting up libxext6:armhf (2:1.3.3-1.1) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libgcc-9-dev:armhf (9.3.0-22) ... Setting up libegl-mesa0:armhf (20.3.5-1) ... Setting up libunbound8:armhf (1.13.1-1) ... Setting up libgnutls30:armhf (3.7.1-3) ... Setting up libgmpxx4ldbl:armhf (2:6.2.1+dfsg-1) ... Setting up libfreetype6:armhf (2.10.4+dfsg-1) ... Setting up libxfixes3:armhf (1:5.0.3-2) ... Setting up libgssapi-krb5-2:armhf (1.18.3-4) ... Setting up libgnutlsxx28:armhf (3.7.1-3) ... Setting up libxt6:armhf (1:1.2.0-1) ... Setting up libxext-dev:armhf (2:1.3.3-1.1) ... Setting up libegl1:armhf (1.3.2-1) ... Setting up libfontconfig1:armhf (2.13.1-4.2) ... Setting up libxrender-dev:armhf (1:0.9.10-1) ... Setting up libtirpc3:armhf (1.3.1-1) ... Setting up libgnutls-dane0:armhf (3.7.1-3) ... Setting up libxft2:armhf (2.3.2-2) ... Setting up libxmu6:armhf (2:1.1.2-2+b3) ... Setting up libgnutls-openssl27:armhf (3.7.1-3) ... Setting up libglx-mesa0:armhf (20.3.5-1) ... Setting up libgmp-dev:armhf (2:6.2.1+dfsg-1) ... Setting up libglx0:armhf (1.3.2-1) ... Setting up nettle-dev:armhf (3.7-2.1) ... Setting up libtirpc-dev:armhf (1.3.1-1) ... Setting up libgl1:armhf (1.3.2-1) ... Setting up libxt-dev:armhf (1:1.2.0-1) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libglx-dev:armhf (1.3.2-1) ... Setting up libglu1-mesa:armhf (9.0.1-1) ... Setting up libgl-dev:armhf (1.3.2-1) ... Setting up libxm4:armhf (2.3.8-3) ... Setting up libegl-dev:armhf (1.3.2-1) ... Setting up libxmu-dev:armhf (2:1.1.2-2+b3) ... Setting up libmrm4:armhf (2.3.8-3) ... Setting up libglu1-mesa-dev:armhf (9.0.1-1) ... Setting up libuil4:armhf (2.3.8-3) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.31-10) ... Setting up libgles-dev:armhf (1.3.2-1) ... Setting up libgnutls28-dev:armhf (3.7.1-3) ... Setting up libstdc++-9-dev:armhf (9.3.0-22) ... Setting up libpcre3-dev:armhf (2:8.39-13) ... Setting up libglvnd-dev:armhf (1.3.2-1) ... Setting up libexpat1-dev:armhf (2.2.10-2) ... Setting up uuid-dev:armhf (2.36.1-7) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ... Setting up libgl1-mesa-dev:armhf (20.3.5-1) ... Setting up libpng-dev:armhf (1.6.37-3) ... Setting up libfreetype-dev:armhf (2.10.4+dfsg-1) ... Setting up libfreetype6-dev:armhf (2.10.4+dfsg-1) ... Setting up libfontconfig-dev:armhf (2.13.1-4.2) ... Setting up libxft-dev:armhf (2.3.2-2) ... Setting up libfontconfig1-dev:armhf (2.13.1-4.2) ... Setting up libmotif-dev:armhf (2.3.8-3) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.31-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-14-amd64 #1 SMP Debian 4.19.171-2 (2021-01-30) amd64 (x86_64) Toolchain package versions: binutils_2.35.2-2 dpkg-dev_1.20.7.1 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-10 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-armhf-cross_10.2.1-6cross1 libstdc++-9-dev_9.3.0-22 libstdc++6_10.2.1-6 libstdc++6-armhf-cross_10.2.1-6cross1 linux-libc-dev_5.10.26-1 Package versions: adduser_3.118 apt_2.2.2 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11 base-passwd_3.5.49 bash_5.1-2+b1 binutils_2.35.2-2 binutils-arm-linux-gnueabihf_2.35.2-2 binutils-common_2.35.2-2 binutils-x86-64-linux-gnu_2.35.2-2 bsdextrautils_2.36.1-7 bsdutils_1:2.36.1-7 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-arm-linux-gnueabihf_10.2.1-6cross1 cpp-8_8.4.0-7 cpp-arm-linux-gnueabihf_4:10.2.1-1 cross-config_2.6.17 crossbuild-essential-armhf_12.9 csh_20110502-6 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.76 debhelper_13.3.4 debian-archive-keyring_2021.1.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-5 dpkg_1.20.7.1 dpkg-cross_2.6.17 dpkg-dev_1.20.7.1 dwz_0.14-1 e2fsprogs_1.46.2-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-7 file_1:5.39-3 findutils_4.8.0-1 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-arm-linux-gnueabihf_10.2.1-6cross1 g++-arm-linux-gnueabihf_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-arm-linux-gnueabihf_10.2.1-6cross1 gcc-10-arm-linux-gnueabihf-base_10.2.1-6cross1 gcc-10-base_10.2.1-6 gcc-10-cross-base_10.2.1-6cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.3.0-22 gcc-arm-linux-gnueabihf_4:10.2.1-1 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-1 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.2.2 libarchive-zip-perl_1.68-1 libasan5_9.3.0-22 libasan6_10.2.1-6 libasan6-armhf-cross_10.2.1-6cross1 libatomic1_10.2.1-6 libatomic1-armhf-cross_10.2.1-6cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2 libblkid1_2.36.1-7 libbrotli-dev_1.0.9-2+b2 libbrotli1_1.0.9-2+b2 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-10 libc-dev-bin_2.31-10 libc6_2.31-10 libc6-armhf-cross_2.31-9cross4 libc6-dev_2.31-10 libc6-dev-armhf-cross_2.31-9cross4 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6 libcom-err2_1.46.2-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.18-2 libcrypt1_1:4.4.18-2 libctf-nobfd0_2.35.2-2 libctf0_2.35.2-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.257 libdebhelper-perl_13.3.4 libdebian-dpkgcross-perl_2.6.17 libdpkg-perl_1.20.7.1 libdrm-amdgpu1_2.4.104-1 libdrm-common_2.4.104-1 libdrm-nouveau2_2.4.104-1 libdrm-radeon1_2.4.104-1 libdrm2_2.4.104-1 libedit2_3.1-20191231-2+b1 libegl-dev_1.3.2-1 libegl-mesa0_20.3.5-1 libegl1_1.3.2-1 libelf1_0.183-3 libevent-2.1-7_2.1.12-stable-1 libexpat1_2.2.10-2 libexpat1-dev_2.2.10-2 libext2fs2_1.46.2-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-7 libffi6_3.2.1-9 libffi7_3.3-6 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.11.0-1 libfile-which-perl_1.23-1 libfontconfig-dev_2.13.1-4.2 libfontconfig1_2.13.1-4.2 libfontconfig1-dev_2.13.1-4.2 libfreetype-dev_2.10.4+dfsg-1 libfreetype6_2.10.4+dfsg-1 libfreetype6-dev_2.10.4+dfsg-1 libgbm1_20.3.5-1 libgcc-10-dev_10.2.1-6 libgcc-10-dev-armhf-cross_10.2.1-6cross1 libgcc-9-dev_9.3.0-22 libgcc-s1_10.2.1-6 libgcc-s1-armhf-cross_10.2.1-6cross1 libgcrypt20_1.8.7-3 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgl-dev_1.3.2-1 libgl1_1.3.2-1 libgl1-mesa-dev_20.3.5-1 libgl1-mesa-dri_20.3.5-1 libglapi-mesa_20.3.5-1 libgles-dev_1.3.2-1 libgles1_1.3.2-1 libgles2_1.3.2-1 libglib2.0-0_2.66.8-1 libglu1-mesa_9.0.1-1 libglu1-mesa-dev_9.0.1-1 libglvnd-dev_1.3.2-1 libglvnd0_1.3.2-1 libglx-dev_1.3.2-1 libglx-mesa0_20.3.5-1 libglx0_1.3.2-1 libgmp-dev_2:6.2.1+dfsg-1 libgmp10_2:6.2.1+dfsg-1 libgmpxx4ldbl_2:6.2.1+dfsg-1 libgnutls-dane0_3.7.1-3 libgnutls-openssl27_3.7.1-3 libgnutls28-dev_3.7.1-3 libgnutls30_3.7.1-3 libgnutlsxx28_3.7.1-3 libgomp1_10.2.1-6 libgomp1-armhf-cross_10.2.1-6cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7-2.1 libice-dev_2:1.0.10-1 libice6_2:1.0.10-1 libicu67_67.1-6 libidn2-0_2.3.0-5 libidn2-dev_2.3.0-5 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.1-6 libjpeg62-turbo_1:2.0.6-4 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libllvm11_1:11.0.1-2 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-6 liblz4-1_1.9.3-1 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-3 libmotif-common_2.3.8-3 libmotif-dev_2.3.8-3 libmount1_2.36.1-7 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libmrm4_2.3.8-3 libncursesw6_6.2+20201114-2 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7-2.1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopengl-dev_1.3.2-1 libopengl0_1.3.2-1 libp11-kit-dev_0.23.22-1 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-7 libpam-modules-bin_1.4.0-7 libpam-runtime_1.4.0-7 libpam0g_1.4.0-7 libpcre16-3_2:8.39-13 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-3 libpipeline1_1.5.3-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpthread-stubs0-dev_0.4-1 libquadmath0_10.2.1-6 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsensors-config_1:3.6.0-7 libsensors5_1:3.6.0-7 libsepol1_3.1-1 libsigsegv2_2.13-1 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-7 libss2_1.46.2-1 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-armhf-cross_10.2.1-6cross1 libstdc++-9-dev_9.3.0-22 libstdc++6_10.2.1-6 libstdc++6-armhf-cross_10.2.1-6cross1 libsub-override-perl_0.09-2 libsystemd0_247.3-3 libtasn1-6_4.16.0-2 libtasn1-6-dev_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libtsan0_10.2.1-6 libubsan1_10.2.1-6 libubsan1-armhf-cross_10.2.1-6cross1 libuchardet0_0.0.7-1 libudev1_247.3-3 libuil4_2.3.8-3 libunbound8_1.13.1-1 libunistring2_0.9.10-4 libuuid1_2.36.1-7 libvulkan1_1.2.162.0-1 libwayland-client0_1.19.0-2 libwayland-server0_1.19.0-2 libx11-6_2:1.7.0-2 libx11-data_2:1.7.0-2 libx11-dev_2:1.7.0-2 libx11-xcb1_2:1.7.0-2 libxau-dev_1:1.0.9-1 libxau6_1:1.0.9-1 libxcb-dri2-0_1.14-3 libxcb-dri3-0_1.14-3 libxcb-glx0_1.14-3 libxcb-present0_1.14-3 libxcb-shm0_1.14-3 libxcb-sync1_1.14-3 libxcb-xfixes0_1.14-3 libxcb1_1.14-3 libxcb1-dev_1.14-3 libxdamage1_1:1.1.5-2 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1.1 libxext6_2:1.3.3-1.1 libxfixes3_1:5.0.3-2 libxft-dev_2.3.2-2 libxft2_2.3.2-2 libxm4_2.3.8-3 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.3+b1 libxmu-dev_2:1.1.2-2+b3 libxmu-headers_2:1.1.2-2 libxmu6_2:1.1.2-2+b3 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxt-dev_1:1.2.0-1 libxt6_1:1.2.0-1 libxxf86vm1_1:1.1.4-1+b2 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libz3-4_4.8.10-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.26-1 linux-libc-dev-armhf-cross_5.10.13-1cross4 login_1:4.8.1-1 logsave_1.46.2-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 nettle-dev_3.7-2.1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-3 perl-base_5.32.1-3 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-3 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-6 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 uil_2.3.8-3 util-linux_2.36.1-7 uuid-dev_2.36.1-7 x11-common_1:7.7+22 x11proto-dev_2020.1-1 x11proto-xext-dev_2020.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ncbi-tools6 Binary: libncbi6, libncbi6-dev, ncbi-data, ncbi-rrna-data, ncbi-tools-bin, ncbi-tools-x11, ncbi-cn3d, libvibrant6b, libvibrant6-dev Architecture: any all Version: 6.1.20170106+dfsg1-9 Maintainer: Debian Med Packaging Team Uploaders: Aaron M. Ucko Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/ncbi-tools6 Vcs-Git: https://salsa.debian.org/med-team/ncbi-tools6.git Testsuite: autopkgtest Testsuite-Triggers: netcat Build-Depends: debhelper-compat (= 12) Build-Depends-Arch: csh | c-shell, libglu1-mesa-dev | libglu-dev, libgnutls28-dev | gnutls-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev Build-Depends-Indep: icoutils, imagemagick Package-List: libncbi6 deb libs optional arch=any libncbi6-dev deb libdevel optional arch=any libvibrant6-dev deb libdevel optional arch=any libvibrant6b deb libs optional arch=any ncbi-cn3d deb science optional arch=any ncbi-data deb libs optional arch=all ncbi-rrna-data deb science optional arch=all ncbi-tools-bin deb science optional arch=any ncbi-tools-x11 deb science optional arch=any Checksums-Sha1: cb0fbd5bab413805b9661f36b5d275c94e51560e 58331860 ncbi-tools6_6.1.20170106+dfsg1.orig.tar.xz 199af64555b41296c7d09e777a7a401dff04d5e2 1512872 ncbi-tools6_6.1.20170106+dfsg1-9.debian.tar.xz Checksums-Sha256: af7f6f6f75601d1676db015d188309afb2604f427e76ac83990be0c44007ea17 58331860 ncbi-tools6_6.1.20170106+dfsg1.orig.tar.xz 6d9b8ac4f8ab71f7ddf467563c4223ed3168f15a34dfeb53dfffbe822624934f 1512872 ncbi-tools6_6.1.20170106+dfsg1-9.debian.tar.xz Files: 0c2d79e2d06a42882d22265d560a9732 58331860 ncbi-tools6_6.1.20170106+dfsg1.orig.tar.xz ff6fca2b1d964403b49423b8ac27cdbb 1512872 ncbi-tools6_6.1.20170106+dfsg1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAl+FDecACgkQHnCRsfFK ZKKd3w//QupvO8n14Wh7lMH+S+D2o1oRZ0MJwp16pJMHH68l6NX0eM5m/0GBMD1m Blx6g0S7FzvDEtrFFl8eizIN044095OTSzFpuOkRFfkiDGY+oY2y9S5kpoJ6+TEi 9oql6KOtGtZ/2inCo8u4ifMTF/ixRQlwIjcDMluuv69HVB3CRKgh4Tu9w7Z4jE4c x08eQCbOjkHqv6yDENdiuZ87/jEREXTh4P0rQXE/aDtQCTZJV/JhFU4+VgaAx5C3 vnDTKwarFWOwuVNmm/q6uHb/uuvGZ02X4L4SjPK0XNODwOJ6VJIBxqjMf690QhBw TBSt/hHHXbgp09G/f/fNCaP4TZBQAEv7j33stAij1Pv5luKQAI+2+nQ1H4cNxH+a 8MBLUkqiNBXRb0dhg6kMgOVdKPDydWR+Dj5z+5d9vnc70mbQ2Gt6rJAFvPYdslak gZaZGUVJ/1ramYVjDeN5uIL2Sc31mscbzw0Q2k/umm/R2wScQzJlDvLESekW8noV j/VHTH2qyHxLA7Ovy2Kk8Sw3gN56v67aZMCW7CpE3BwtCgMvdakPNqkr0Cn2eNkf ZXdSAITStP9irm27RY9XQxbD8jmR3CDVznazw4hrSJob61RGnfkAy8lvXMctcbyA 0xYfzTrHQdcJQdeiF7G9ndeJ/Z59js0s1EEIaRVv4CX3X0ot9E8= =SBI3 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.u4Rm4Ofu/trustedkeys.kbx': General error gpgv: Signature made Tue Oct 13 02:16:07 2020 UTC gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-tools6_6.1.20170106+dfsg1-9.dsc dpkg-source: info: extracting ncbi-tools6 in /<> dpkg-source: info: unpacking ncbi-tools6_6.1.20170106+dfsg1.orig.tar.xz dpkg-source: info: unpacking ncbi-tools6_6.1.20170106+dfsg1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-changes Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-aa955b67-9047-4697-8893-b00eb4c4503f SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package ncbi-tools6 dpkg-buildpackage: info: source version 6.1.20170106+dfsg1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aaron M. Ucko dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from ncbi-tools6-6.1.20170106+dfsg1/debian/source/options: --single-debian-patch debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf build/* bin/* include/* lib/* shlib mkdir -p build bin include lib rm -f debian/*.menu debian/asntool.xpm debian/ncbilogo.xpm chmod -x debian/makemenu debian/installman make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' cd build && ln -s ../make/*.unx . ln -s ../make/ln-if-absent build mv build/makeall.unx build/makefile /usr/bin/make -C build all LCL=lnx CC="arm-linux-gnueabihf-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG" \ LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \ LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a make[2]: Entering directory '/<>/build' chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . rm -f ../include/asn.h mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_connssl.h . ./ln-if-absent ../connect/ncbi_lbos.h . ./ln-if-absent ../connect/ncbi_lbosp.h . ./ln-if-absent ../connect/parson.h . ./ln-if-absent ../connect/ncbi_lbsm.h . make[2]: [makefile:714: copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . make[2]: [makefile:715: copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_socketp.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/ncbi_version.h . ./ln-if-absent ../connect/ncbi_base64.h . ./ln-if-absent ../connect/urlquery.h ../include mkdir ../include/connect chmod ug+rw,o+r ../include/connect cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . ./ln-if-absent ../ctools/*.h . mkdir ../include/ctools chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../api/*.inc . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. make[2]: [makefile:771: copy] Error 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. make[2]: [makefile:772: copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. make[2]: [makefile:773: copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. make[2]: [makefile:774: copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. make[2]: [makefile:775: copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. make[2]: [makefile:776: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. make[2]: [makefile:777: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. make[2]: [makefile:778: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. make[2]: [makefile:779: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . make[2]: [makefile:780: copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. make[2]: [makefile:781: copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. make[2]: [makefile:782: copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. make[2]: [makefile:783: copy] Error 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . ./ln-if-absent ../algo/blast/core/*.inl . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . cp -fp ../algo/blast/composition_adjustment/*.h \ ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . echo Waiting...go Waiting...go arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ncbithr.c:289: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbithr.c: In function ‘s_TlsDestroyAll’: ncbithr.c:2529:11: warning: variable ‘err_code’ set but not used [-Wunused-but-set-variable] 2529 | int err_code = 0; | ^~~~~~~~ cp -p ncbithr.o ../lib arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimain.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbimain.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbimain.c:82:1: warning: return type defaults to ‘int’ [-Wimplicit-int] 82 | main(int argc, char *argv[]) | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbibs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbibs.c:55: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbibs.c: In function ‘Nlm_BSSeek’: ncbibs.c:448:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 448 | if (sp == bsp->seekptr) /* already in right position */ | ^~ ncbibs.c:451:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 451 | bsp->seekptr = sp; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wwwutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbiwww.h:106, from wwwutils.c:150: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbierr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: In function ‘strncat’, inlined from ‘ErrMsgRoot_fopen’ at ncbierr.c:955:13: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 4096 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbienv.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbienv.c:310: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbienv.c:310: In function ‘strncpy’, inlined from ‘Nlm_WorkGetAppParam.part.0’ at ncbienv.c:466:11: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from corepriv.h:85, from ncbienv.c:310: ncbienv.c: In function ‘Nlm_WorkGetAppParam.part.0’: ../include/ncbistr.h:279:20: note: length computed here 279 | #define Nlm_StrLen strlen ../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’ 305 | #define StrLen Nlm_StrLen | ^~~~~~~~~~ ncbienv.c:464:36: note: in expansion of macro ‘StrLen’ 464 | Nlm_Int2 bytesToAppend = StrLen(eip->name) + 1; | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbienv.c:310: In function ‘strncpy’, inlined from ‘Nlm_TransientLookup.part.0’ at ncbienv.c:1788:15: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from corepriv.h:85, from ncbienv.c:310: ncbienv.c: In function ‘Nlm_TransientLookup.part.0’: ../include/ncbistr.h:279:20: note: length computed here 279 | #define Nlm_StrLen strlen ../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’ 305 | #define StrLen Nlm_StrLen | ^~~~~~~~~~ ncbienv.c:1786:31: note: in expansion of macro ‘StrLen’ 1786 | bytesToAppend = StrLen(eip->name) + 1; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbifile.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbifile.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiprop.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbiprop.c:104: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimath.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbimath.h:69, from ncbimath.c:90: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbimath.c: In function ‘general_lngamma’: ncbimath.c:230:5: warning: ‘y[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 230 | ++y[0]; | ~^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimem.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbimem.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimisc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbimisc.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbimisc.c: In function ‘Nlm_MD5Final’: ncbimisc.c:2250:26: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] 2250 | memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */ | ^ ncbimisc.c: In function ‘XmlPathSuffixIs’: ncbimisc.c:2966:58: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2966 | if (StringHasNoText (parentFilter) || parent != NULL && StringICmp (parent->name, parentFilter) == 0) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimsg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbimsg.c:167: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbistr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbistr.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisgml.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbisgml.c:83: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ncbisgml.c:83: In function ‘strncat’, inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbitime.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbitime.c:77: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbilang.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbilang.c:57: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnbufo.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asnbufo.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asndebin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asndebin.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asndebin.c: In function ‘AsnBinReadVal’: asndebin.c:565:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 565 | else | ^~~~ asndebin.c:568:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 568 | if (atp == NULL) | ^~ asndebin.c:634:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 634 | else /* empty sequence written */ | ^~~~ asndebin.c:636:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 636 | while (atp2 != NULL) | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnenbin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnenbin.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asngen.c:80: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asngen.c: In function ‘AsnFindNthPieceOfObject’: asngen.c:540:16: warning: variable ‘aeop’ set but not used [-Wunused-but-set-variable] 540 | AsnExpOptPtr aeop; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnio.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnio.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asnio.c: In function ‘AsnIoWriteBlock’: asnio.c:698:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 698 | else /* use alternative write function */ | ^~~~ asnio.c:701:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 701 | if (retval != bytes_to_write) | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlex.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnlex.c:52: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asnlex.c: In function ‘AsnTxtReadId’: asnlex.c:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 198 | if ((token == END_STRUCT) && ((isa == SEQ_TYPE) || (isa == SET_TYPE))) | ^~ asnlex.c:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 201 | if (token != IDENT) | ^~ asnlex.c: In function ‘AsnTxtReadVal’: asnlex.c:345:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 345 | else /* empty sequence written */ | ^~~~ asnlex.c:347:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 347 | while (atp2 != NULL) | ^~~~~ At top level: asnlex.c:1290:13: warning: ‘AsnLexWordUTF8’ defined but not used [-Wunused-function] 1290 | static Int2 AsnLexWordUTF8 (AsnIoPtr aip) | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlext.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnlext.c:57: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnout.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnout.c:79: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asnout.c: In function ‘AsnOutput’: asnout.c:159:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 159 | else | ^~~~ asnout.c:162:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 162 | for (i = 0; i < 12; i++) | ^~~ asnout.c:213:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 213 | if (! loader) | ^~ asnout.c:216:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 216 | attvp = p.root_tmpvalue.next; | ^~~~~ asnout.c:270:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 270 | if (! loader) | ^~ asnout.c:273:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 273 | attp = p.root_tmptype.next; | ^~~~ asnout.c:450:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 450 | if (! loader) | ^~ asnout.c:453:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 453 | i = 1; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnprint.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnprint.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asnprint.c: In function ‘GetXMLModuleName’: asnprint.c:102:2: warning: statement with no effect [-Wunused-value] 102 | for (currmod; currmod != NULL; currmod = currmod->next) | ^~~ asnprint.c: In function ‘AsnPrintCloseStruct’: asnprint.c:1774:7: warning: variable ‘isa’ set but not used [-Wunused-but-set-variable] 1774 | Int2 isa; | ^~~ asnprint.c: In function ‘AsnPrintModuleXMLInc’: asnprint.c:2095:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] 2095 | CharPtr ptr; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asntypes.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asntypes.c:111: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asntypes.c: In function ‘AsnEnumTypeStr’: asntypes.c:1383:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1383 | if ((atp->type->isa != ENUM_TYPE) && (atp->type->isa != INTEGER_TYPE)) | ^~ asntypes.c:1386:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1386 | avnp = (AsnValxNodePtr) atp->branch; | ^~~~ asntypes.c: In function ‘AsnTreeLoad’: asntypes.c:1274:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1274 | fscanf(fp, "%d %d %d", &numval, &numtype, &nummod); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asntypes.c:1288:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1288 | fscanf(fp, "%d %s %ld %lf %d", &isa, name, &intvalue, &realvalue, &next); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asntypes.c:1301:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fscanf(fp, "%d %s %d %d %d %d %d %d %d %d %d %d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1302 | &isa, name, &tagclass, &tagnumber, bools, bools+1, bools+2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1303 | bools+3, bools+4, &defaultvalue, &type, &branch, &next); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asntypes.c:1333:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1333 | fscanf(fp, "%s %s %d %d", name, fname, &type, &next); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngenob.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asngenob.c:72: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gifgen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from gifgen.c:137: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/ncbi.h:59, from gifgen.c:137: gifgen.c: In function ‘gdImageSetClip’: ../include/ncbimem.h:194:21: warning: ‘__builtin_memcmp_eq’ reading 16 bytes from a region of size 4 [-Wstringop-overflow=] 194 | #define Nlm_MemCmp memcmp ../include/ncbimem.h:213:17: note: in expansion of macro ‘Nlm_MemCmp’ 213 | #define MemCmp Nlm_MemCmp | ^~~~~~~~~~ gifgen.c:1850:17: note: in expansion of macro ‘MemCmp’ 1850 | if (clip && MemCmp(&clip, &empty_clip, sizeof(gdRect))) { | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF togif.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from togif.c:111: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ togif.c: In function ‘gdImageCreateFromGif’: togif.c:961:12: warning: variable ‘AspectRatio’ set but not used [-Wunused-but-set-variable] 961 | int AspectRatio; | ^~~~~~~~~~~ togif.c:960:12: warning: variable ‘Background’ set but not used [-Wunused-but-set-variable] 960 | int Background; | ^~~~~~~~~~ togif.c:959:12: warning: variable ‘ColorResolution’ set but not used [-Wunused-but-set-variable] 959 | int ColorResolution; | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithrs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ncbithrs.c:289: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbithrs.c: In function ‘s_TlsDestroyAll’: ncbithrs.c:2529:11: warning: unused variable ‘err_code’ [-Wunused-variable] 2529 | int err_code = 0; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c regex.c: In function ‘re_match_2’: regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3768 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3915 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2); | ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3968 | PUSH_FAILURE_POINT (p + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~ regex.c:4071:25: warning: variable ‘sdummy’ set but not used [-Wunused-but-set-variable] 4071 | const char *sdummy; | ^~~~~~ regex.c:4070:28: warning: variable ‘pdummy’ set but not used [-Wunused-but-set-variable] 4070 | unsigned char *pdummy; | ^~~~~~ regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 4107 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 4120 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tsprintf.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiargs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbiargs.c:82: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tree.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/treemgr.h:67, from tree.c:79: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/matrix.h:44, from matrix.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_socket.c:75: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbi_socket.c: In function ‘s_GetLocalPort’: ncbi_socket.c:440:50: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign] 440 | if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0 | ^~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 117 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncbi_socket.c: In function ‘s_IsConnected_’: ncbi_socket.c:2572:73: warning: pointer targets in passing argument 5 of ‘getsockopt’ differ in signedness [-Wpointer-sign] 2572 | if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len) | ^~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:210:32: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 210 | socklen_t *__restrict __optlen) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ncbi_socket.c: In function ‘s_CreateOnTop’: ncbi_socket.c:4435:35: warning: pointer targets in passing argument 3 of ‘getpeername’ differ in signedness [-Wpointer-sign] 4435 | if (getpeername(fd, &peer.sa, &peerlen) != 0) { | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:131:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 131 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncbi_socket.c:4471:43: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign] 4471 | if (getsockname(fd, &peer.sa, &peerlen) != 0) | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 117 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncbi_socket.c: In function ‘s_CreateListening’: ncbi_socket.c:4865:48: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign] 4865 | error = getsockname(x_lsock, &addr.sa, &addrlen) != 0 | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 117 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncbi_socket.c: In function ‘s_Accept’: ncbi_socket.c:5105:49: warning: pointer targets in passing argument 3 of ‘accept’ differ in signedness [-Wpointer-sign] 5105 | if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) { | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:233:28: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 233 | socklen_t *__restrict __addr_len); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ncbi_socket.c: In function ‘s_RecvMsg’: ncbi_socket.c:5409:52: warning: pointer targets in passing argument 6 of ‘recvfrom’ differ in signedness [-Wpointer-sign] 5409 | (struct sockaddr*) &sin, &sinlen); | ^~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from /usr/arm-linux-gnueabihf/include/sys/socket.h:269, from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/bits/socket2.h:65:49: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 65 | __SOCKADDR_ARG __addr, socklen_t *__restrict __addr_len) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ncbi_socket.c: In function ‘TRIGGER_Create’: ncbi_socket.c:5661:18: warning: unused variable ‘x_id’ [-Wunused-variable] 5661 | unsigned int x_id = ++s_ID_Counter; | ^~~~ ncbi_socket.c: In function ‘DSOCK_Bind’: ncbi_socket.c:7390:51: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign] 7390 | error = getsockname(sock->sock, &addr.sa, &addrlen) != 0 | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 117 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_buffer.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_types.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_core.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_core_c.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_util.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_util.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_priv.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_ansi_ext.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_connection.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_connector.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_connutil.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_file_connector.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_heapmgr.c:115: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_http_connector.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbi_http_connector.c: In function ‘x_Authenticate’: ncbi_http_connector.c:220:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 220 | s[userlen++] = ':'; | ~~~~~~~~~~~~~^~~~~ ncbi_http_connector.c:174:10: note: at offset -1 to object ‘buf’ with size 336 declared here 174 | char buf[80+sizeof(uuu->net_info->user)*4], *s; | ^~~ ncbi_http_connector.c:220:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 220 | s[userlen++] = ':'; | ~~~~~~~~~~~~~^~~~~ ncbi_http_connector.c:174:10: note: at offset -1 to object ‘buf’ with size 336 declared here 174 | char buf[80+sizeof(uuu->net_info->user)*4], *s; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_server_info.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_service.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_version.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_version.h:37, from ncbi_version.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_service_connector.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_ftp_connector.c:49: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_dispd.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_local.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_local.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_socket_connector.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urlquery.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from urlquery.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF binary.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/binary.h:60, from binary.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_sendmail.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn_connection.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbos.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_lbos.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’: ncbi_lbos.c:756:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 756 | if (s_LBOS_Lbosresolver == NULL) | ^~ ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 759 | s_LBOS_Lbosresolver = strdup(str + 7); | ^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF parson.c parson.c: In function ‘remove_comments’: parson.c:281:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 281 | for (i = 0; i < (ptr - string) + end_token_len; i++) | ^~~ parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 283 | string = ptr + end_token_len - 1; | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from parson.c:32: In function ‘strncpy’, inlined from ‘parson_strndup’ at parson.c:135:5, inlined from ‘parson_strdup’ at parson.c:140:12, inlined from ‘x_json_object_add’ at parson.c:318:28: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ parson.c: In function ‘x_json_object_add’: parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from parson.c:32: In function ‘strncpy’, inlined from ‘parson_strndup’ at parson.c:135:5, inlined from ‘x_json_value_init_string’ at parson.c:1104:12: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ parson.c: In function ‘x_json_value_init_string’: parson.c:1101:18: note: length computed here 1101 | string_len = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from parson.c:32: In function ‘strncpy’, inlined from ‘parson_strndup’ at parson.c:135:5, inlined from ‘parson_strdup’ at parson.c:140:12, inlined from ‘x_json_parse_string_with_comments’ at parson.c:913:27: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ parson.c: In function ‘x_json_parse_string_with_comments’: parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from parson.c:32: In function ‘strncpy’, inlined from ‘parson_strndup’ at parson.c:135:5, inlined from ‘parson_strdup’ at parson.c:140:12, inlined from ‘x_json_value_deep_copy’ at parson.c:1195:32: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ parson.c: In function ‘x_json_value_deep_copy’: parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ipv6.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_ipv6.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnflpt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from drwnflpt.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnfspc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from drwnfspc.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnmfls.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from drwnmfls.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rm -f libncbi.a ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o ncbi_lbos.o parson.o ncbi_ipv6.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbi.a ../lib ranlib ../lib/libncbi.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_LIBGNUTLS ncbi_gnutls.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_gnutls.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbi_gnutls.c: In function ‘s_GnuTlsCreate’: ncbi_gnutls.c:293:5: warning: ‘gnutls_connection_end_t’ is deprecated [-Wdeprecated-declarations] 293 | gnutls_connection_end_t end = (side == eSOCK_Client | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ncbi_gnutls.c:35: ncbi_gnutls.c: In function ‘s_GnuTlsInit’: ncbi_priv.h:217:33: warning: ‘version’ may be used uninitialized in this function [-Wmaybe-uninitialized] 217 | _mess.message = NcbiMessagePlusError(&_mess.dynamic, \ | ^~~~~~~~~~~~~~~~~~~~ ncbi_gnutls.c:582:17: note: ‘version’ was declared here 582 | const char* version; | ^~~~~~~ rm -f libconnssl.a ar cru libconnssl.a ncbi_gnutls.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libconnssl.a ../lib ranlib ../lib/libconnssl.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objacces.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnacces.h:9, from objacces.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objacces.c: In function ‘LinkSetAsnWrite’: objacces.c:140:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 140 | if (atp == NULL) | ^~ objacces.c:143:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 143 | if (lsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objacces.c: In function ‘LinkSetAsnRead’: objacces.c:216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 216 | if (atp == NULL) | ^~ objacces.c:219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 219 | lsp = LinkSetNew(); | ^~~ objacces.c:220:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 220 | if (lsp == NULL) | ^~ objacces.c:223:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 223 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ | ^~ objacces.c:226:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 226 | if (atp == NULL) | ^~ objacces.c:228:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 228 | if (AsnReadVal(aip, atp, &av) <= 0) /* get the num */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objalign.h:103, from objalign.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objalign.c: In function ‘CommonSeqAlignLabelFunc’: objalign.c:135:27: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 135 | CharPtr curr, typelabel, tmp; | ^~~ objalign.c: In function ‘SeqAlignAsnRead’: objalign.c:597:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 597 | if (atp == NULL) | ^~ objalign.c:600:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 600 | sap = SeqAlignNew(); | ^~~ objalign.c:601:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 601 | if (sap == NULL) | ^~ objalign.c:604:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 604 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘DenseDiagAsnWrite’: objalign.c:1020:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1020 | if (atp == NULL) | ^~ objalign.c:1023:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1023 | if (ddp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objalign.c: In function ‘DenseDiagAsnRead’: objalign.c:1112:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1112 | if (atp == NULL) | ^~ objalign.c:1115:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1115 | ddp = DenseDiagNew(); | ^~~ objalign.c:1116:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1116 | if (ddp == NULL) | ^~ objalign.c:1119:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1119 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘DenseSegAsnWrite’: objalign.c:1268:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1268 | if (atp == NULL) | ^~ objalign.c:1271:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1271 | if (dsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objalign.c: In function ‘DenseSegAsnRead’: objalign.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1374 | if (atp == NULL) | ^~ objalign.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1377 | dsp = DenseSegNew(); | ^~~ objalign.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1378 | if (dsp == NULL) | ^~ objalign.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1381 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘StdSegAsnWrite’: objalign.c:1559:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1559 | if (atp == NULL) | ^~ objalign.c:1562:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1562 | if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objalign.c:1581:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1581 | if (! SeqLocSetAsnWrite(ssp->loc, aip, STD_SEG_loc, STD_SEG_loc_E)) | ^~ objalign.c:1584:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1584 | if (ssp->scores != NULL) | ^~ objalign.c: In function ‘StdSegAsnRead’: objalign.c:1626:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1626 | if (atp == NULL) | ^~ objalign.c:1629:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1629 | ssp = StdSegNew(); | ^~~ objalign.c:1630:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1630 | if (ssp == NULL) | ^~ objalign.c:1633:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1633 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘SeqAlignSetAsnWrite’: objalign.c:1704:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1704 | if (atp == NULL) | ^~ objalign.c:1708:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1708 | oldsap = sap; | ^~~~~~ objalign.c: In function ‘PackSegAsnWrite’: objalign.c:1892:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1892 | if (atp == NULL) | ^~ objalign.c:1895:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1895 | if (psp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objalign.c:1926:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1926 | if (! AsnCloseStruct(aip, PACKED_SEG_starts, (Pointer)psp->starts)) | ^~ objalign.c:1929:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1929 | av.ptrvalue = psp->present; | ^~ objalign.c: In function ‘PackSegAsnRead’: objalign.c:1999:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1999 | if (atp == NULL) | ^~ objalign.c:2002:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2002 | psp = PackSegNew(); | ^~~ objalign.c:2003:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2003 | if (psp == NULL) | ^~ objalign.c:2006:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2006 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘SplicedSegAsnRead’: objalign.c:2179:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2179 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SparseSegAsnRead’: objalign.c:2422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2422 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SplicedExonAsnRead’: objalign.c:2614:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2614 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SplicedSegModifierFree’: objalign.c:2875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2875 | Pointer pnt; | ^~~ objalign.c: In function ‘ProductPosFree’: objalign.c:3050:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3050 | Pointer pnt; | ^~~ objalign.c: In function ‘SplicedExonChunkFree’: objalign.c:3225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3225 | Pointer pnt; | ^~~ objalign.c: In function ‘SpliceSiteAsnRead’: objalign.c:3469:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3469 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘ProtPosAsnRead’: objalign.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3626 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SparseAlignAsnRead’: objalign.c:3798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3798 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SparseSegExtAsnRead’: objalign.c:4020:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4020 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SplicedSegModifierAsnRead’: objalign.c:2955:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2955 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objalign.c: In function ‘SplicedExonChunkAsnRead’: objalign.c:3326:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3326 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objalign.c: In function ‘ProductPosAsnRead’: objalign.c:3130:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3130 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objall.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objall.h:64, from objall.c:63: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objbibli.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnbibli.h:9, from objbibli.c:113: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objbibli.c: In function ‘AffilAsnRead’: objbibli.c:208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 208 | if (atp == NULL) | ^~ objbibli.c:211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 211 | afp = AffilNew(); | ^~~ objbibli.c: In function ‘AffilAsnWrite’: objbibli.c:296:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 296 | if (atp == NULL) | ^~ objbibli.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 299 | if (afp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘AuthListFree’: objbibli.c:458:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 458 | if (alp->affil != NULL) | ^~ objbibli.c:460:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 460 | return (AuthListPtr)MemFree(alp); | ^~~~~~ objbibli.c: In function ‘AuthListAsnRead’: objbibli.c:489:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 489 | if (atp == NULL) | ^~ objbibli.c:492:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 492 | alp = AuthListNew(); | ^~~ objbibli.c: In function ‘AuthListAsnWrite’: objbibli.c:583:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 583 | if (atp == NULL) | ^~ objbibli.c:586:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 586 | if (alp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:590:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 590 | if (! AsnOpenStruct(aip, atp, (Pointer)alp)) /* open AuthList SEQUENCE */ | ^~ objbibli.c:593:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 593 | av.ptrvalue = alp->names; | ^~ objbibli.c: In function ‘AuthorFree’: objbibli.c:677:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 677 | if (ap->affil != NULL) | ^~ objbibli.c:679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 679 | return (AuthorPtr)MemFree(ap); | ^~~~~~ objbibli.c: In function ‘AuthorAsnRead’: objbibli.c:707:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 707 | if (atp == NULL) | ^~ objbibli.c:710:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 710 | ap = AuthorNew(); | ^~ objbibli.c: In function ‘AuthorAsnWrite’: objbibli.c:779:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 779 | if (atp == NULL) | ^~ objbibli.c:782:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 782 | if (ap == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitArtAsnRead’: objbibli.c:925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 925 | if (atp == NULL) | ^~ objbibli.c:928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 928 | cap = CitArtNew(); | ^~~ objbibli.c: In function ‘CitArtAsnWrite’: objbibli.c:1027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1027 | if (atp == NULL) | ^~ objbibli.c:1030:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1030 | if (cap == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:1034:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1034 | if (! AsnOpenStruct(aip, atp, (Pointer)cap)) /* open the SEQUENCE */ | ^~ objbibli.c:1037:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1037 | if (cap->title != NULL) | ^~ objbibli.c: In function ‘ImprintAsnRead’: objbibli.c:1152:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1152 | if (atp == NULL) | ^~ objbibli.c:1155:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1155 | ip = ImprintNew(); | ^~ objbibli.c: In function ‘ImprintAsnWrite’: objbibli.c:1251:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1251 | if (atp == NULL) | ^~ objbibli.c:1254:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1254 | if (ip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitRetractAsnRead’: objbibli.c:1391:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1391 | if (atp == NULL) | ^~ objbibli.c:1394:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1394 | crp = CitRetractNew(); | ^~~ objbibli.c: In function ‘CitRetractAsnWrite’: objbibli.c:1445:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1445 | if (atp == NULL) | ^~ objbibli.c:1448:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1448 | if (crp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitJourAsnRead’: objbibli.c:1524:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1524 | if (atp == NULL) | ^~ objbibli.c:1527:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1527 | cjp = CitJourNew(); | ^~~ objbibli.c: In function ‘CitJourAsnWrite’: objbibli.c:1576:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1576 | if (atp == NULL) | ^~ objbibli.c:1579:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1579 | if (cjp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:1585:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1585 | if (! ImprintAsnWrite(cjp->imp, aip, CIT_JOUR_imp)) | ^~ objbibli.c:1587:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1587 | if (! AsnCloseStruct(aip, atp, (Pointer)cjp)) /* end SEQUENCE */ | ^~ objbibli.c: In function ‘CitBookAsnRead’: objbibli.c:1676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1676 | if (atp == NULL) | ^~ objbibli.c:1679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1679 | cbp = CitBookNew(); | ^~~ objbibli.c: In function ‘CitBookAsnWrite’: objbibli.c:1744:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1744 | if (atp == NULL) | ^~ objbibli.c:1747:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1747 | if (cbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:1760:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1760 | if (! ImprintAsnWrite(cbp->imp, aip, CIT_BOOK_imp)) | ^~ objbibli.c:1762:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1762 | if (! AsnCloseStruct(aip, atp, (Pointer)cbp)) /* end SEQUENCE */ | ^~ objbibli.c: In function ‘CitProcAsnWrite’: objbibli.c:1879:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1879 | if (atp == NULL) | ^~ objbibli.c:1882:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1882 | if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:1901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1901 | if (! AsnCloseStruct(aip, CIT_PROC_meet, (Pointer)cpp->otherdata)) | ^~ objbibli.c:1903:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1903 | if (! AsnCloseStruct(aip, atp, (Pointer)cpp)) /* end SEQUENCE */ | ^~ objbibli.c: In function ‘CitLetAsnWrite’: objbibli.c:1995:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1995 | if (atp == NULL) | ^~ objbibli.c:1998:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1998 | if (clp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitPatAsnRead’: objbibli.c:2091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2091 | if (atp == NULL) | ^~ objbibli.c:2094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2094 | cpp = CitPatNew(); | ^~~ objbibli.c: In function ‘CitPatAsnWrite’: objbibli.c:2213:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2213 | if (atp == NULL) | ^~ objbibli.c:2216:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2216 | if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘IdPatAsnRead’: objbibli.c:2346:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2346 | if (atp == NULL) | ^~ objbibli.c:2349:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2349 | idp = IdPatNew(); | ^~~ objbibli.c: In function ‘IdPatAsnWrite’: objbibli.c:2412:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2412 | if (atp == NULL) | ^~ objbibli.c:2415:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2415 | if (idp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitGenAsnRead’: objbibli.c:2546:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2546 | if (atp == NULL) | ^~ objbibli.c:2549:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2549 | cgp = CitGenNew(); | ^~~ objbibli.c: In function ‘CitGenAsnWrite’: objbibli.c:2627:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2627 | if (atp == NULL) | ^~ objbibli.c:2630:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2630 | if (cgp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘TitleAsnWrite’: objbibli.c:2825:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2825 | if (atp == NULL) | ^~ objbibli.c:2828:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2828 | if (tp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitSubFree’: objbibli.c:2909:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2909 | if (csp == NULL) | ^~ objbibli.c:2912:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2912 | AuthListFree(csp->authors); | ^~~~~~~~~~~~ objbibli.c: In function ‘CitSubAsnRead’: objbibli.c:2943:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2943 | if (atp == NULL) | ^~ objbibli.c:2946:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2946 | csp = CitSubNew(); | ^~~ objbibli.c:2958:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2958 | if (atp == NULL) | ^~ objbibli.c:2961:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2961 | if (atp == CIT_SUB_imp) | ^~ objbibli.c: In function ‘CitSubAsnWrite’: objbibli.c:3029:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3029 | if (atp == NULL) | ^~ objbibli.c:3032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3032 | if (csp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:3038:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3038 | if (! AuthListAsnWrite(csp->authors, aip, CIT_SUB_authors)) | ^~ objbibli.c:3041:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3041 | if (csp->imp != NULL) | ^~ objbibli.c: In function ‘PatPrioritySetAsnRead’: objbibli.c:3694:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3694 | if (ppp == NULL) | ^~ objbibli.c:3697:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3697 | if (head == NULL) | ^~ objbibli.c:3715:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3715 | if (atp == NULL) | ^~ objbibli.c:3717:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3717 | ppp->date = DateAsnRead(aip, atp); | ^~~ objbibli.c: In function ‘PatPrioritySetAsnWrite’: objbibli.c:3755:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3755 | if (! AsnOpenStruct(aip, set, (Pointer)ppp)) /* open the SEQUENCE OF */ | ^~ objbibli.c:3758:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3758 | for (tmp = ppp; tmp != NULL; tmp = tmp->next) | ^~~ objbibli.c: In function ‘ArticleIdAsnRead’: objbibli.c:3849:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3849 | if (atp == NULL) | ^~ objbibli.c:3852:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3852 | aidp = ArticleIdNew(); | ^~~~ objbibli.c: In function ‘ArticleIdAsnWrite’: objbibli.c:3925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3925 | if (atp == NULL) | ^~ objbibli.c:3928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3928 | if (aidp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘PubStatusDateAsnRead’: objbibli.c:4039:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 4039 | if (atp == NULL) | ^~ objbibli.c:4042:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 4042 | psdp = PubStatusDateNew(); | ^~~~ objbibli.c: In function ‘PubStatusDateAsnWrite’: objbibli.c:4091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 4091 | if (atp == NULL) | ^~ objbibli.c:4094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 4094 | if (psdp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfeat.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objfeat.h:48, from objfeat.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objfeat.c: In function ‘ModelEvidenceSupportAsnRead’: objfeat.c:1500:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1500 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘ExperimentSupportAsnRead’: objfeat.c:1748:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1748 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘ProgramIdAsnRead’: objfeat.c:1933:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1933 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘EvidenceBasisAsnRead’: objfeat.c:2103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2103 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘InferenceSupportAsnRead’: objfeat.c:2267:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2267 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘ModelEvidenceItemAsnRead’: objfeat.c:2483:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2483 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘SeqFeatSupportAsnRead’: objfeat.c:2688:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2688 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘RNAQualAsnRead’: objfeat.c:4244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4244 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘RNAQualSetAsnRead’: objfeat.c:4396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4396 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘RNAGenAsnRead’: objfeat.c:4524:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4524 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘GeneNomenclatureAsnRead’: objfeat.c:4707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4707 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘OrgNameMatch’: objfeat.c:5957:28: warning: self-comparison always evaluates to false [-Wtautological-compare] 5957 | || onp2->mgcode != onp2->mgcode | ^~ objfeat.c: In function ‘TaxElementAsnWrite’: objfeat.c:7399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 7399 | if (! AsnOpenStruct(aip, atp, (Pointer)tep)) | ^~ objfeat.c:7402:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 7402 | av.intvalue = (Int4)(tep->fixed_level); | ^~ objfeat.c: In function ‘PCRPrimerAsnRead’: objfeat.c:8276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8276 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PCRPrimerSetAsnRead’: objfeat.c:8421:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8421 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PCRReactionAsnRead’: objfeat.c:8542:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8542 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PCRReactionSetAsnRead’: objfeat.c:8685:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8685 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘CloneRefAsnRead’: objfeat.c:8812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8812 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘CloneSeqSetAsnRead’: objfeat.c:9005:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9005 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘CloneSeqAsnRead’: objfeat.c:9135:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9135 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘SomaticOriginAsnRead’: objfeat.c:9487:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9487 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘SomaticOriginConditionAsnRead’: objfeat.c:9566:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9566 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘VariationRefAsnRead’: objfeat.c:9645:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9645 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘Consequence_loss_of_heterozygosityAsnRead’: objfeat.c:10687:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10687 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘Consequence_frameshiftAsnRead’: objfeat.c:10765:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10765 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘VarRefDataFree’: objfeat.c:10865:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 10865 | Pointer pnt; | ^~~ objfeat.c: In function ‘VarRefDataSetAsnRead’: objfeat.c:10918:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10918 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘Consequence_elementFree’: objfeat.c:11112:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 11112 | Pointer pnt; | ^~~ objfeat.c: In function ‘VariationInstAsnRead’: objfeat.c:11241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11241 | AsnReadFunc func; | ^~~~ objfeat.c: At top level: objfeat.c:11393:1: warning: "/*" within comment [-Wcomment] 11393 | /************************************************** | objfeat.c: In function ‘VariantPropertiesAsnRead’: objfeat.c:11422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11422 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PhenotypeAsnRead’: objfeat.c:11746:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11746 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PopulationDataAsnRead’: objfeat.c:11945:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11945 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘ExtLocAsnRead’: objfeat.c:12161:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12161 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘Seq_seqFree’: objfeat.c:12327:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 12327 | Pointer pnt; | ^~~ objfeat.c: In function ‘DeltaItemAsnRead’: objfeat.c:12360:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12360 | AsnReadFunc func; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asngen.h:9, from objgen.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objgen.c: In function ‘DateClean’: objgen.c:161:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 161 | if (dp == NULL) | ^~ objgen.c:164:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 164 | memset(dp, 0, sizeof(NCBI_Date)); | ^~~~~~ objgen.c: In function ‘DateAsnWrite’: objgen.c:399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 399 | if (atp == NULL) | ^~ objgen.c:402:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 402 | if (dp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘DateAsnRead’: objgen.c:494:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 494 | if (atp == NULL) | ^~ objgen.c:497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 497 | dp = DateNew(); | ^~ objgen.c:498:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 498 | if (dp == NULL) | ^~ objgen.c:501:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 501 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the CHOICE value (nothing) */ | ^~ objgen.c: In function ‘DbtagFree’: objgen.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 752 | if (dbt == NULL) | ^~ objgen.c:755:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 755 | dbt->tag = ObjectIdFree(dbt->tag); | ^~~ objgen.c: In function ‘DbtagAsnRead’: objgen.c:784:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 784 | if (atp == NULL) | ^~ objgen.c:787:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 787 | dbt = DbtagNew(); | ^~~ objgen.c:788:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 788 | if (dbt == NULL) | ^~ objgen.c:791:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 791 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the START_STRUCT */ | ^~ objgen.c:799:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 799 | if (dbt->tag == NULL) | ^~ objgen.c:802:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 802 | atp = AsnReadId(aip, amp, atp); if (atp == NULL) goto erret; /* END_STRUCT */ | ^~~ objgen.c: In function ‘DbtagAsnWrite’: objgen.c:833:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 833 | if (atp == NULL) | ^~ objgen.c:836:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 836 | if (dbt == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘ObjectIdAsnRead’: objgen.c:980:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 980 | if (atp == NULL) | ^~ objgen.c:983:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 983 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the CHOICE value (nothing) */ | ^~ objgen.c:989:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 989 | if (oid == NULL) | ^~ objgen.c:991:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 991 | if (atp == OBJECT_ID_id) | ^~ objgen.c: In function ‘ObjectIdAsnWrite’: objgen.c:1024:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1024 | if (atp == NULL) | ^~ objgen.c:1027:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1027 | if (oid == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘NameStdFree’: objgen.c:1174:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1174 | if (nsp == NULL) | ^~ objgen.c:1177:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1177 | for (i = 0; i < 7; i++) | ^~~ objgen.c: In function ‘NameStdAsnRead’: objgen.c:1208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1208 | if (atp == NULL) | ^~ objgen.c:1211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1211 | nsp = NameStdNew(); | ^~~ objgen.c:1212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1212 | if (nsp == NULL) | ^~ objgen.c:1215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1215 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the START_STRUCT */ | ^~ objgen.c: In function ‘NameStdAsnWrite’: objgen.c:1271:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1271 | if (atp == NULL) | ^~ objgen.c:1274:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1274 | if (nsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘PersonIdFree’: objgen.c:1368:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1368 | if (pid == NULL) | ^~ objgen.c:1371:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1371 | if (pid->choice == 1) /* Dbtag */ | ^~ objgen.c: In function ‘PersonIdAsnWrite’: objgen.c:1464:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1464 | if (atp == NULL) | ^~ objgen.c:1467:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1467 | if (pid == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘IntFuzzAsnRead’: objgen.c:1682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1682 | if (atp == NULL) | ^~ objgen.c:1685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1685 | ifp = IntFuzzNew(); | ^~~ objgen.c:1686:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1686 | if (ifp == NULL) | ^~ objgen.c:1689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1689 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the CHOICE (nothing) */ | ^~ objgen.c: In function ‘UserFieldAsnRead’: objgen.c:1944:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1944 | if (atp == NULL) | ^~ objgen.c:1947:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1947 | ufp = UserFieldNew(); | ^~~ objgen.c: In function ‘UserObjectAsnRead’: objgen.c:2434:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2434 | if (atp == NULL) | ^~ objgen.c:2437:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2437 | uop = UserObjectNew(); | ^~~ objgen.c:2438:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2438 | if (uop == NULL) | ^~ objgen.c:2441:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2441 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objloc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from objloc.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objloc.c: In function ‘SeqIdAsnWrite’: objloc.c:313:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 313 | if (atp == NULL) | ^~ objloc.c:316:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 316 | if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqIdAsnRead’: objloc.c:443:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 443 | if (atp == NULL) | ^~ objloc.c:446:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 446 | anp = ValNodeNew(NULL); | ^~~ objloc.c: In function ‘SeqIdDup’: objloc.c:587:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 587 | if (oldid == NULL) | ^~ objloc.c:590:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 590 | newid = ValNodeNew(NULL); | ^~~~~ objloc.c: In function ‘SeqIdSetAsnRead’: objloc.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 752 | if (AsnReadVal(aip, atp, &av) <= 0) /* end struct */ | ^~ objloc.c:754:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 754 | if (first == NULL) | ^~ objloc.c: In function ‘SeqIdSetAsnWrite’: objloc.c:786:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 786 | if (atp2 == NULL) | ^~ objloc.c:789:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 789 | if (anp == NULL) { AsnNullValueMsg(aip, settype); goto erret; } | ^~ objloc.c: In function ‘TextSeqIdAsnWrite’: objloc.c:864:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 864 | if (atp == NULL) | ^~ objloc.c:867:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 867 | if (tsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘TextSeqIdAsnRead’: objloc.c:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 934 | if (atp == NULL) | ^~ objloc.c:937:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 937 | tsip = TextSeqIdNew(); | ^~~~ objloc.c:938:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 938 | if (tsip == NULL) | ^~ objloc.c:941:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 941 | if ((AsnReadVal(aip, oldtype, &av)) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘PatentSeqIdAsnWrite’: objloc.c:1018:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1018 | if (atp == NULL) | ^~ objloc.c:1021:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1021 | if (psip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘PatentSeqIdAsnRead’: objloc.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1068 | if (atp == NULL) | ^~ objloc.c:1071:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1071 | psip = PatentSeqIdNew(); | ^~~~ objloc.c:1072:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1072 | if (psip == NULL) | ^~ objloc.c:1075:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1075 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘GiimAsnWrite’: objloc.c:1151:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1151 | if (atp == NULL) | ^~ objloc.c:1154:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1154 | if (gip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘GiimAsnRead’: objloc.c:1216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1216 | if (gip == NULL) | ^~ objloc.c:1219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1219 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘PDBSeqIdAsnWrite’: objloc.c:1305:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1305 | if (atp == NULL) | ^~ objloc.c:1308:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1308 | if (pdbsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘PDBSeqIdAsnRead’: objloc.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1374 | if (atp == NULL) | ^~ objloc.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1377 | pdbsip = PDBSeqIdNew(); | ^~~~~~ objloc.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1378 | if (pdbsip == NULL) | ^~ objloc.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1381 | if ((AsnReadVal(aip, oldtype, &av)) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘SeqLocAsnWrite’: objloc.c:1528:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1528 | if (atp == NULL) | ^~ objloc.c:1531:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1531 | if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqLocAsnRead’: objloc.c:1624:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1624 | if (atp == NULL) | ^~ objloc.c:1627:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1627 | anp = ValNodeNew(NULL); | ^~~ objloc.c:1628:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1628 | if (anp == NULL) | ^~ objloc.c:1631:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1631 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the CHOICE value (nothing) */ | ^~ objloc.c: In function ‘SeqLocMixAsnWrite’: objloc.c:1738:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1738 | if (atp == NULL) | ^~ objloc.c:1741:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1741 | if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqLocEquivAsnWrite’: objloc.c:1805:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1805 | if (atp == NULL) | ^~ objloc.c:1808:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1808 | if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqLocSetAsnWrite’: objloc.c:1873:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1873 | if (atp2 == NULL) | ^~ objloc.c:1876:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1876 | if (anp == NULL) { AsnNullValueMsg(aip, set); goto erret; } | ^~ objloc.c: In function ‘SeqLocSetAsnRead’: objloc.c:1940:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1940 | if (AsnReadVal(aip, atp, &av) <= 0) /* read END_STRUCT */ | ^~ objloc.c:1942:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1942 | if (first == NULL) | ^~ objloc.c: In function ‘SeqIntAsnWrite’: objloc.c:2022:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2022 | if (atp == NULL) | ^~ objloc.c:2025:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2025 | if (sip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqIntAsnRead’: objloc.c:2095:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2095 | if (atp == NULL) | ^~ objloc.c:2098:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2098 | sip = SeqIntNew(); | ^~~ objloc.c:2099:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2099 | if (sip == NULL) | ^~ objloc.c:2102:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2102 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘PackSeqIntAsnWrite’: objloc.c:2179:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2179 | if (atp == NULL) | ^~ objloc.c:2181:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2181 | oldsip = sip; | ^~~~~~ objloc.c:2185:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2185 | if (! AsnOpenStruct(aip, atp, (Pointer)oldsip)) | ^~ objloc.c:2187:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2187 | for ( ;sip != NULL; sip = sip->next) | ^~~ objloc.c: In function ‘SeqPntAsnWrite’: objloc.c:2309:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2309 | if (atp == NULL) | ^~ objloc.c:2312:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2312 | if (spp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqPntAsnRead’: objloc.c:2374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2374 | if (atp == NULL) | ^~ objloc.c:2377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2377 | spp = SeqPntNew(); | ^~~ objloc.c:2378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2378 | if (spp == NULL) | ^~ objloc.c:2381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2381 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘PackSeqPntAsnWrite’: objloc.c:2479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2479 | if (atp == NULL) | ^~ objloc.c:2482:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2482 | if (pspp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘PackSeqPntAsnRead’: objloc.c:2553:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2553 | if (atp == NULL) | ^~ objloc.c:2556:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2556 | pspp = PackSeqPntNew(); | ^~~~ objloc.c:2557:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2557 | if (pspp == NULL) | ^~ objloc.c:2560:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2560 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘SeqBondAsnWrite’: objloc.c:2724:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2724 | if (atp == NULL) | ^~ objloc.c:2727:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2727 | if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqBondAsnRead’: objloc.c:2776:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2776 | if (atp == NULL) | ^~ objloc.c:2779:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2779 | sbp = SeqBondNew(); | ^~~ objloc.c:2780:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2780 | if (sbp == NULL) | ^~ objloc.c:2783:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2783 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmedli.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmedli.h:80, from objmedli.c:104: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmedli.c: In function ‘MedlineMeshAsnRead’: objmedli.c:248:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 248 | if (atp == NULL) | ^~ objmedli.c:251:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 251 | mmp = MedlineMeshNew(); | ^~~ objmedli.c: In function ‘DocRefFree’: objmedli.c:1190:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1190 | if (drp == NULL) | ^~ objmedli.c:1193:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1193 | return (DocRefPtr)MemFree(drp); | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpub.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objpub.h:70, from objpub.c:125: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objpub.c: In function ‘PubSetAsnRead’: objpub.c:831:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 831 | if (AsnReadVal(aip, settype, &av) <= 0) /* read START_STRUCT */ | ^~ objpub.c:834:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 834 | if (settype == PUB_SET_pub) | ^~ objpub.c:901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 901 | if (AsnReadVal(aip, settype, &av) <= 0) /* read END_STRUCT for SET OF */ | ^~ objpub.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 903 | if (anp == NULL) | ^~ objpub.c: In function ‘PubLabelUnique’: objpub.c:1360:17: warning: unused variable ‘pmid’ [-Wunused-variable] 1360 | Int4 muid = 0, pmid = 0; | ^~~~ objpub.c:1360:7: warning: unused variable ‘muid’ [-Wunused-variable] 1360 | Int4 muid = 0, pmid = 0; | ^~~~ objpub.c: In function ‘PubSetAsnRead’: objpub.c:876:16: warning: ‘func’ may be used uninitialized in this function [-Wmaybe-uninitialized] 876 | pnt = (* func)(aip, atp); | ~^~~~~~~~~~~~~~~~~ objpub.c:887:25: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 887 | cit->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objres.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from objres.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objscoremat.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objscoremat.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objscoremat.c: In function ‘PssmAsnRead’: objscoremat.c:93:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 93 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘PssmIntermediateDataAsnRead’: objscoremat.c:339:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 339 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘PssmFinalDataAsnRead’: objscoremat.c:548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 548 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘PssmParametersAsnRead’: objscoremat.c:766:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 766 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘PssmWithParametersAsnRead’: objscoremat.c:946:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 946 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘BlockPropertyAsnRead’: objscoremat.c:1113:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1113 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘CoreBlockAsnRead’: objscoremat.c:1289:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1289 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘LoopConstraintAsnRead’: objscoremat.c:1480:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1480 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘CoreDefAsnRead’: objscoremat.c:1646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1646 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘FormatRpsDbParametersAsnRead’: objscoremat.c:1817:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1817 | AsnReadFunc func; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from objseq.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objseq.c: In function ‘LinkageEvidenceAsnRead’: objseq.c:1609:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1609 | AsnReadFunc func; | ^~~~ objseq.c: In function ‘SeqGapAsnRead’: objseq.c:1764:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1764 | AsnReadFunc func; | ^~~~ objseq.c: In function ‘SeqDescrAsnWriteExtra’: objseq.c:2035:48: warning: variable ‘had_anp’ set but not used [-Wunused-but-set-variable] 2035 | Boolean retval = FALSE, had_extra = FALSE, had_anp = FALSE; | ^~~~~~~ objseq.c: In function ‘AnnotIdAsnWrite’: objseq.c:4841:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 4841 | else | ^~~~ objseq.c:4843:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 4843 | break; | ^~~~~ objseq.c:4849:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 4849 | else | ^~~~ objseq.c:4851:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 4851 | break; | ^~~~~ objseq.c: In function ‘AnnotDescAsnWrite’: objseq.c:5226:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 5226 | else | ^~~~ objseq.c:5228:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 5228 | break; | ^~~~~ objseq.c: In function ‘BioseqAsnRead’: objseq.c:977:21: warning: ‘osp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 977 | else if (osp->load_by_id) /* don't load it */ | ~~~^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objblock.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objblock.h:70, from objblock.c:74: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objblock.c: In function ‘EMBLBlockFree’: objblock.c:900:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 900 | if (ebp == NULL) | ^~ objblock.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 903 | DateFree(ebp->creation_date); | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcode.c objcode.c:48:51: warning: "/*" within comment [-Wcomment] 48 | * environment variables to allow reading from data/*.val, replaced tabs in source code with spaces | In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objcode.h:64, from objcode.c:105: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsset.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from objsset.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objsset.c: In function ‘BioseqSetFree’: objsset.c:363:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 363 | if (bsp == NULL) | ^~ objsset.c:366:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 366 | if (bsp->idx.parentptr == NULL || bsp->idx.parenttype == OBJ_SEQSUB) { | ^~ objsset.c: In function ‘SeqEntryFree’: objsset.c:878:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 878 | else if (sep->choice == 2) | ^~ objsset.c:881:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 881 | return (SeqEntryPtr)MemFree(sep); | ^~~~~~ objsset.c: In function ‘SeqEntryFreeComponents’: objsset.c:898:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 898 | else if (sep->choice == 2) | ^~ objsset.c:901:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 901 | return sep; | ^~~~~~ objsset.c: In function ‘SeqEntryAsnGet’: objsset.c:1075:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1075 | if (retcode == 1) /* just after a Bioseq */ | ^~ objsset.c:1077:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1077 | av.ptrvalue = (Pointer) osp; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsub.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnsubmt.h:9, from objsub.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objsub.c: In function ‘SubmitAsnLoad’: objsub.c:341:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 341 | if (loaded) | ^~ objsub.c:344:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 344 | if (! SeqSetAsnLoad ()) | ^~ objsub.c:347:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 347 | if (AsnLoad()) | ^~ objsub.c:350:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 350 | ObjMgrTypeLoad(OBJ_SEQSUB, "Seq-submit", seqsubtypename, "Sequence Data Submission", | ^~~~~~~~~~~~~~ objsub.c: In function ‘SeqSubmitAsnWrite’: objsub.c:455:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 455 | if (atp == NULL) | ^~ objsub.c:458:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 458 | if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objsub.c:462:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 462 | if (! AsnOpenStruct(aip, atp, (Pointer)ssp)) | ^~ objsub.c:465:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 465 | if (! SubmitBlockAsnWrite(ssp->sub, aip, SEQ_SUBMIT_sub)) goto erret; | ^~ objsub.c: In function ‘SeqSubmitAsnRead’: objsub.c:539:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 539 | if (atp == NULL) | ^~ objsub.c:542:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 542 | ssp = SeqSubmitNew(); | ^~~ objsub.c:543:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 543 | if (ssp == NULL) | ^~ objsub.c:546:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 546 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ | ^~ objsub.c: In function ‘SubmitBlockAsnWrite’: objsub.c:682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 682 | if (atp == NULL) | ^~ objsub.c:685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 685 | if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objsub.c:689:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 689 | if (! AsnOpenStruct(aip, atp, (Pointer)sbp)) | ^~ objsub.c:692:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 692 | if (! ContactInfoAsnWrite(sbp->contact, aip, SUBMIT_BLOCK_contact)) | ^~ objsub.c: In function ‘SubmitBlockAsnRead’: objsub.c:770:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 770 | if (atp == NULL) | ^~ objsub.c:773:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 773 | oldatp = atp; | ^~~~~~ objsub.c:775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 775 | if (sbp == NULL) | ^~ objsub.c:778:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 778 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ | ^~ objsub.c: In function ‘ContactInfoAsnWrite’: objsub.c:942:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 942 | if (atp == NULL) | ^~ objsub.c:945:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 945 | if (cip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objsub.c:949:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 949 | if (! AsnOpenStruct(aip, atp, (Pointer)cip)) | ^~ objsub.c:952:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 952 | if (cip->name != NULL) | ^~ objsub.c: In function ‘ContactInfoAsnRead’: objsub.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1068 | if (atp == NULL) | ^~ objsub.c:1070:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1070 | oldatp = atp; | ^~~~~~ objsub.c:1073:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1073 | if (cip == NULL) | ^~ objsub.c:1076:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1076 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objprt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objprt.h:67, from objprt.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objprt.c: In function ‘PrintFormBooleanAsnRead’: objprt.c:892:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 892 | ptr=PrintFormBooleanFree(ptr); | ^~~~~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function ‘PrintFormEnumAsnRead’: objprt.c:1010:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1010 | ptr=PrintFormEnumFree(ptr); | ^~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function ‘PrintFormTextAsnRead’: objprt.c:1119:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1119 | ptr=PrintFormTextFree(ptr); | ^~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function ‘PrintFormAsnRead’: objprt.c:600:8: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 600 | vnp = PrintFormFree(vnp); | ^~~~~~~~~~~~~~~~~~ objprt.c: In function ‘PrintFormatAsnRead’: objprt.c:435:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 435 | ptr=PrintFormatFree(ptr); | ^~~~~~~~~~~~~~~~~~~~ objprt.c: In function ‘PrintTemplateAsnRead’: objprt.c:250:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 250 | ptr=PrintTemplateFree(ptr); | ^~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function ‘PrintFormBlockAsnRead’: objprt.c:767:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 767 | ptr=PrintFormBlockFree(ptr); | ^~~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function ‘UserFormatAsnRead’: objprt.c:1231:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1231 | ptr=UserFormatFree(ptr); | ^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfdef.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objfeat.h:48, from ../include/objfdef.h:48, from objfdef.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalignloc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objalignloc.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objalignloc.c: In function ‘AlignLocSetAsnRead’: objalignloc.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 69 | AsnReadFunc func; | ^~~~ objalignloc.c: In function ‘Loc_locFree’: objalignloc.c:196:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 196 | Pointer pnt; | ^~~ objalignloc.c: In function ‘AlignLocAsnRead’: objalignloc.c:233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 233 | AsnReadFunc func; | ^~~~ objalignloc.c:232:12: warning: unused variable ‘isError’ [-Wunused-variable] 232 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘Loc_locAsnRead’: objalignloc.c:313:12: warning: unused variable ‘isError’ [-Wunused-variable] 313 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignIdFree’: objalignloc.c:527:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 527 | Pointer pnt; | ^~~ objalignloc.c: In function ‘AlignIdAsnRead’: objalignloc.c:559:12: warning: unused variable ‘isError’ [-Wunused-variable] 559 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignBoxAsnRead’: objalignloc.c:750:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 750 | AsnReadFunc func; | ^~~~ objalignloc.c:749:12: warning: unused variable ‘isError’ [-Wunused-variable] 749 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignRowsAsnRead’: objalignloc.c:932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 932 | AsnReadFunc func; | ^~~~ objalignloc.c:931:12: warning: unused variable ‘isError’ [-Wunused-variable] 931 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignColumnsAsnRead’: objalignloc.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1096 | AsnReadFunc func; | ^~~~ objalignloc.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable] 1095 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignIdAsnRead’: objalignloc.c:615:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 615 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objalignloc.c: In function ‘AlignLocAsnRead’: objalignloc.c:370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 370 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objalignloc.c:312:10: note: ‘choice’ was declared here 312 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtable.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtable.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objtable.c: In function ‘SeqTableColumnInfoAsnRead’: objtable.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objtable.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable] 86 | Boolean isError = FALSE; | ^~~~~~~ objtable.c: In function ‘SeqTableColumnAsnRead’: objtable.c:269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 269 | AsnReadFunc func; | ^~~~ objtable.c:268:12: warning: unused variable ‘isError’ [-Wunused-variable] 268 | Boolean isError = FALSE; | ^~~~~~~ objtable.c: In function ‘SeqTableAsnRead’: objtable.c:474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 474 | AsnReadFunc func; | ^~~~ objtable.c: In function ‘CommonStringTableAsnRead’: objtable.c:657:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 657 | AsnReadFunc func; | ^~~~ objtable.c: In function ‘CommonBytesTableAsnRead’: objtable.c:819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 819 | AsnReadFunc func; | ^~~~ objtable.c: In function ‘SeqTableSingleDataFree’: objtable.c:1225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1225 | Pointer pnt; | ^~~ objtable.c: In function ‘SeqTableSingleDataAsnRead’: objtable.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable] 1269 | Boolean isError = FALSE; | ^~~~~~~ objtable.c: In function ‘SeqTableMultiDataAsnRead’: objtable.c:1111:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1111 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtable.c: In function ‘SeqTableSingleDataAsnRead’: objtable.c:1354:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1354 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtable.c: In function ‘SeqTableSparseIndexAsnRead’: objtable.c:1559:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1559 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpubme.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objpubme.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objpubme.c: In function ‘PubmedEntryAsnRead’: objpubme.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 89 | AsnReadFunc func; | ^~~~ objpubme.c: In function ‘PubmedUrlAsnRead’: objpubme.c:288:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 288 | AsnReadFunc func; | ^~~~ objpubme.c:287:12: warning: unused variable ‘isError’ [-Wunused-variable] 287 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmdrs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmdrs.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmdrs.c: In function ‘MedlarsEntryAsnRead’: objmdrs.c:85:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 85 | AsnReadFunc func; | ^~~~ objmdrs.c: In function ‘MedlarsRecordAsnRead’: objmdrs.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 259 | AsnReadFunc func; | ^~~~ objmdrs.c:258:12: warning: unused variable ‘isError’ [-Wunused-variable] 258 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objproj.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objproj.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objproj.c: In function ‘ProjectAsnRead’: objproj.c:116:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 116 | AsnReadFunc func; | ^~~~ objproj.c:115:12: warning: unused variable ‘isError’ [-Wunused-variable] 115 | Boolean isError = FALSE; | ^~~~~~~ objproj.c: In function ‘ProjectDescrAsnRead’: objproj.c:720:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 720 | AsnReadFunc func; | ^~~~ objproj.c: In function ‘ProjdescFree’: objproj.c:857:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 857 | Pointer pnt; | ^~~ objproj.c: In function ‘ProjdescAsnRead’: objproj.c:898:12: warning: unused variable ‘isError’ [-Wunused-variable] 898 | Boolean isError = FALSE; | ^~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: objproj.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objproj.c: In function ‘ProjdescAsnRead’: objproj.c:958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 958 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objproj.c: In function ‘ProjectItemAsnRead’: objproj.c:536:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 536 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgbseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objgbseq.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objgbseq.c: In function ‘GBSetAsnRead’: objgbseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 69 | AsnReadFunc func; | ^~~~ objgbseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable] 66 | DataVal av; | ^~ objgbseq.c: In function ‘GBSeqAsnRead’: objgbseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 235 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBReferenceAsnRead’: objgbseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 742 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBCommentAsnRead’: objgbseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 983 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBStrucCommentAsnRead’: objgbseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1150 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBFeatureAsnRead’: objgbseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1321 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBFeatureSetAsnRead’: objgbseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1548 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBAltSeqDataAsnRead’: objgbseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1715 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBXrefAsnRead’: objgbseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1882 | AsnReadFunc func; | ^~~~ objgbseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable] 1881 | Boolean isError = FALSE; | ^~~~~~~ objgbseq.c: In function ‘GBStrucCommentItemAsnRead’: objgbseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2053 | AsnReadFunc func; | ^~~~ objgbseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable] 2052 | Boolean isError = FALSE; | ^~~~~~~ objgbseq.c: In function ‘GBIntervalAsnRead’: objgbseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2233 | AsnReadFunc func; | ^~~~ objgbseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable] 2232 | Boolean isError = FALSE; | ^~~~~~~ objgbseq.c: In function ‘GBQualifierAsnRead’: objgbseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2447 | AsnReadFunc func; | ^~~~ objgbseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable] 2446 | Boolean isError = FALSE; | ^~~~~~~ objgbseq.c: In function ‘GBAltSeqItemAsnRead’: objgbseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2622 | AsnReadFunc func; | ^~~~ objgbseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable] 2621 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtseq.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objtseq.c: In function ‘TSeqAsnRead’: objtseq.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 89 | AsnReadFunc func; | ^~~~ objtseq.c: In function ‘TSeqSetAsnRead’: objtseq.c:325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 325 | AsnReadFunc func; | ^~~~ objtseq.c: In function ‘BioseqToTSeq’: objtseq.c:452:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable] 452 | Uint1 seqcode; | ^~~~~~~ objtseq.c: In function ‘BioseqToMiniTSeq’: objtseq.c:564:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable] 564 | Uint1 seqcode; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objinsdseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objinsdseq.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objinsdseq.c: In function ‘INSDSetAsnRead’: objinsdseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 69 | AsnReadFunc func; | ^~~~ objinsdseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable] 66 | DataVal av; | ^~ objinsdseq.c: In function ‘INSDSeqAsnRead’: objinsdseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 235 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDReferenceAsnRead’: objinsdseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 742 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDCommentAsnRead’: objinsdseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 983 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDStrucCommentAsnRead’: objinsdseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1150 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDFeatureAsnRead’: objinsdseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1321 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDFeatureSetAsnRead’: objinsdseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1548 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDAltSeqDataAsnRead’: objinsdseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1715 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDXrefAsnRead’: objinsdseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1882 | AsnReadFunc func; | ^~~~ objinsdseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable] 1881 | Boolean isError = FALSE; | ^~~~~~~ objinsdseq.c: In function ‘INSDStrucCommentItemAsnRead’: objinsdseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2053 | AsnReadFunc func; | ^~~~ objinsdseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable] 2052 | Boolean isError = FALSE; | ^~~~~~~ objinsdseq.c: In function ‘INSDIntervalAsnRead’: objinsdseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2233 | AsnReadFunc func; | ^~~~ objinsdseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable] 2232 | Boolean isError = FALSE; | ^~~~~~~ objinsdseq.c: In function ‘INSDQualifierAsnRead’: objinsdseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2447 | AsnReadFunc func; | ^~~~ objinsdseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable] 2446 | Boolean isError = FALSE; | ^~~~~~~ objinsdseq.c: In function ‘INSDAltSeqItemAsnRead’: objinsdseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2622 | AsnReadFunc func; | ^~~~ objinsdseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable] 2621 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmacro.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmacro.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmacro.c: In function ‘AECRActionAsnRead’: objmacro.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objmacro.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable] 86 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseActionAsnRead’: objmacro.c:272:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 272 | AsnReadFunc func; | ^~~~ objmacro.c:271:12: warning: unused variable ‘isError’ [-Wunused-variable] 271 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MacroActionListAsnRead’: objmacro.c:478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 478 | AsnReadFunc func; | ^~~~ objmacro.c:475:12: warning: unused variable ‘av’ [-Wunused-variable] 475 | DataVal av; | ^~ objmacro.c: In function ‘SuspectRuleSetAsnRead’: objmacro.c:595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 595 | AsnReadFunc func; | ^~~~ objmacro.c:592:12: warning: unused variable ‘av’ [-Wunused-variable] 592 | DataVal av; | ^~ objmacro.c: In function ‘WordSubstitutionAsnRead’: objmacro.c:731:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 731 | AsnReadFunc func; | ^~~~ objmacro.c: In function ‘WordSubstitutionSetAsnRead’: objmacro.c:899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 899 | AsnReadFunc func; | ^~~~ objmacro.c:896:12: warning: unused variable ‘av’ [-Wunused-variable] 896 | DataVal av; | ^~ objmacro.c: In function ‘StringConstraintAsnRead’: objmacro.c:1045:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1045 | AsnReadFunc func; | ^~~~ objmacro.c:1044:12: warning: unused variable ‘isError’ [-Wunused-variable] 1044 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘StringConstraintSetAsnRead’: objmacro.c:1307:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1307 | AsnReadFunc func; | ^~~~ objmacro.c:1304:12: warning: unused variable ‘av’ [-Wunused-variable] 1304 | DataVal av; | ^~ objmacro.c: In function ‘LocationPosConstraintFree’: objmacro.c:1403:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1403 | Pointer pnt; | ^~~ objmacro.c: In function ‘LocationPosConstraintAsnRead’: objmacro.c:1432:12: warning: unused variable ‘isError’ [-Wunused-variable] 1432 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘LocationConstraintAsnRead’: objmacro.c:1633:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1633 | AsnReadFunc func; | ^~~~ objmacro.c:1632:12: warning: unused variable ‘isError’ [-Wunused-variable] 1632 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatQualLegalValAsnRead’: objmacro.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1849 | AsnReadFunc func; | ^~~~ objmacro.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable] 1848 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatQualLegalValChoiceFree’: objmacro.c:1979:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1979 | Pointer pnt; | ^~~ objmacro.c: In function ‘FeatQualLegalValChoiceAsnRead’: objmacro.c:2011:12: warning: unused variable ‘isError’ [-Wunused-variable] 2011 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatQualLegalSetAsnRead’: objmacro.c:2165:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2165 | AsnReadFunc func; | ^~~~ objmacro.c:2162:12: warning: unused variable ‘av’ [-Wunused-variable] 2162 | DataVal av; | ^~ objmacro.c: In function ‘FeatQualChoiceFree’: objmacro.c:2261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2261 | Pointer pnt; | ^~~ objmacro.c: In function ‘FeatQualChoiceAsnRead’: objmacro.c:2293:12: warning: unused variable ‘isError’ [-Wunused-variable] 2293 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatureFieldAsnRead’: objmacro.c:2474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2474 | AsnReadFunc func; | ^~~~ objmacro.c:2473:12: warning: unused variable ‘isError’ [-Wunused-variable] 2473 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatureFieldLegalAsnRead’: objmacro.c:2641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2641 | AsnReadFunc func; | ^~~~ objmacro.c:2640:12: warning: unused variable ‘isError’ [-Wunused-variable] 2640 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatureFieldPairAsnRead’: objmacro.c:2807:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2807 | AsnReadFunc func; | ^~~~ objmacro.c:2806:12: warning: unused variable ‘isError’ [-Wunused-variable] 2806 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RnaFeatTypeFree’: objmacro.c:2950:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2950 | Pointer pnt; | ^~~ objmacro.c: In function ‘RnaFeatTypeAsnRead’: objmacro.c:2982:12: warning: unused variable ‘isError’ [-Wunused-variable] 2982 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RnaQualAsnRead’: objmacro.c:3232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3232 | AsnReadFunc func; | ^~~~ objmacro.c:3231:12: warning: unused variable ‘isError’ [-Wunused-variable] 3231 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RnaQualPairAsnRead’: objmacro.c:3400:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3400 | AsnReadFunc func; | ^~~~ objmacro.c:3399:12: warning: unused variable ‘isError’ [-Wunused-variable] 3399 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualPairAsnRead’: objmacro.c:3576:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3576 | AsnReadFunc func; | ^~~~ objmacro.c:3575:12: warning: unused variable ‘isError’ [-Wunused-variable] 3575 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualChoiceFree’: objmacro.c:3704:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3704 | Pointer pnt; | ^~~ objmacro.c: In function ‘SourceQualChoiceAsnRead’: objmacro.c:3733:12: warning: unused variable ‘isError’ [-Wunused-variable] 3733 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualTextValAsnRead’: objmacro.c:3950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3950 | AsnReadFunc func; | ^~~~ objmacro.c:3949:12: warning: unused variable ‘isError’ [-Wunused-variable] 3949 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualValChoiceFree’: objmacro.c:4080:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 4080 | Pointer pnt; | ^~~ objmacro.c: In function ‘SourceQualValChoiceAsnRead’: objmacro.c:4112:12: warning: unused variable ‘isError’ [-Wunused-variable] 4112 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualValSetAsnRead’: objmacro.c:4310:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4310 | AsnReadFunc func; | ^~~~ objmacro.c:4307:12: warning: unused variable ‘av’ [-Wunused-variable] 4307 | DataVal av; | ^~ objmacro.c: In function ‘CDSGeneProtFieldPairAsnRead’: objmacro.c:4442:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4442 | AsnReadFunc func; | ^~~~ objmacro.c:4441:12: warning: unused variable ‘isError’ [-Wunused-variable] 4441 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoFieldFree’: objmacro.c:4570:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 4570 | Pointer pnt; | ^~~ objmacro.c: In function ‘MolinfoFieldAsnRead’: objmacro.c:4599:12: warning: unused variable ‘isError’ [-Wunused-variable] 4599 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoMoleculePairAsnRead’: objmacro.c:4826:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4826 | AsnReadFunc func; | ^~~~ objmacro.c:4825:12: warning: unused variable ‘isError’ [-Wunused-variable] 4825 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoTechniquePairAsnRead’: objmacro.c:4990:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4990 | AsnReadFunc func; | ^~~~ objmacro.c:4989:12: warning: unused variable ‘isError’ [-Wunused-variable] 4989 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoCompletednessPairAsnRead’: objmacro.c:5154:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5154 | AsnReadFunc func; | ^~~~ objmacro.c:5153:12: warning: unused variable ‘isError’ [-Wunused-variable] 5153 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoMolClassPairAsnRead’: objmacro.c:5318:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5318 | AsnReadFunc func; | ^~~~ objmacro.c:5317:12: warning: unused variable ‘isError’ [-Wunused-variable] 5317 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoTopologyPairAsnRead’: objmacro.c:5482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5482 | AsnReadFunc func; | ^~~~ objmacro.c:5481:12: warning: unused variable ‘isError’ [-Wunused-variable] 5481 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoStrandPairAsnRead’: objmacro.c:5646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5646 | AsnReadFunc func; | ^~~~ objmacro.c:5645:12: warning: unused variable ‘isError’ [-Wunused-variable] 5645 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoFieldPairFree’: objmacro.c:5774:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 5774 | Pointer pnt; | ^~~ objmacro.c: In function ‘MolinfoFieldPairAsnRead’: objmacro.c:5821:12: warning: unused variable ‘isError’ [-Wunused-variable] 5821 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoFieldListAsnRead’: objmacro.c:6015:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6015 | AsnReadFunc func; | ^~~~ objmacro.c:6012:12: warning: unused variable ‘av’ [-Wunused-variable] 6012 | DataVal av; | ^~ objmacro.c: In function ‘MolinfoFieldConstraintAsnRead’: objmacro.c:6149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6149 | AsnReadFunc func; | ^~~~ objmacro.c:6148:12: warning: unused variable ‘isError’ [-Wunused-variable] 6148 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘StructuredCommentFieldFree’: objmacro.c:6280:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 6280 | Pointer pnt; | ^~~ objmacro.c: In function ‘StructuredCommentFieldAsnRead’: objmacro.c:6312:12: warning: unused variable ‘isError’ [-Wunused-variable] 6312 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘StructuredCommentFieldPairAsnRead’: objmacro.c:6508:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6508 | AsnReadFunc func; | ^~~~ objmacro.c:6507:12: warning: unused variable ‘isError’ [-Wunused-variable] 6507 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘DBLinkFieldPairAsnRead’: objmacro.c:6678:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6678 | AsnReadFunc func; | ^~~~ objmacro.c:6677:12: warning: unused variable ‘isError’ [-Wunused-variable] 6677 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PubFieldConstraintAsnRead’: objmacro.c:6843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6843 | AsnReadFunc func; | ^~~~ objmacro.c:6842:12: warning: unused variable ‘isError’ [-Wunused-variable] 6842 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PubFieldSpecialConstraintTypeFree’: objmacro.c:6974:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 6974 | Pointer pnt; | ^~~ objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’: objmacro.c:7003:12: warning: unused variable ‘isError’ [-Wunused-variable] 7003 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PubFieldSpecialConstraintAsnRead’: objmacro.c:7220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 7220 | AsnReadFunc func; | ^~~~ objmacro.c:7219:12: warning: unused variable ‘isError’ [-Wunused-variable] 7219 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PublicationConstraintAsnRead’: objmacro.c:7389:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 7389 | AsnReadFunc func; | ^~~~ objmacro.c:7388:12: warning: unused variable ‘isError’ [-Wunused-variable] 7388 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceConstraintAsnRead’: objmacro.c:7571:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 7571 | AsnReadFunc func; | ^~~~ objmacro.c:7570:12: warning: unused variable ‘isError’ [-Wunused-variable] 7570 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CDSGeneProtPseudoConstraintAsnRead’: objmacro.c:7763:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 7763 | AsnReadFunc func; | ^~~~ objmacro.c:7762:12: warning: unused variable ‘isError’ [-Wunused-variable] 7762 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CDSGeneProtConstraintFieldFree’: objmacro.c:7891:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 7891 | Pointer pnt; | ^~~ objmacro.c: In function ‘CDSGeneProtConstraintFieldAsnRead’: objmacro.c:7920:12: warning: unused variable ‘isError’ [-Wunused-variable] 7920 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CDSGeneProtQualConstraintAsnRead’: objmacro.c:8095:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8095 | AsnReadFunc func; | ^~~~ objmacro.c:8094:12: warning: unused variable ‘isError’ [-Wunused-variable] 8094 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FieldConstraintAsnRead’: objmacro.c:8279:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8279 | AsnReadFunc func; | ^~~~ objmacro.c:8278:12: warning: unused variable ‘isError’ [-Wunused-variable] 8278 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FieldTypeFree’: objmacro.c:8413:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 8413 | Pointer pnt; | ^~~ objmacro.c: In function ‘FieldTypeAsnRead’: objmacro.c:8457:12: warning: unused variable ‘isError’ [-Wunused-variable] 8457 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SequenceConstraintMolTypeConstraintFree’: objmacro.c:8666:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 8666 | Pointer pnt; | ^~~ objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’: objmacro.c:8695:12: warning: unused variable ‘isError’ [-Wunused-variable] 8695 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘QuantityConstraintFree’: objmacro.c:8875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 8875 | Pointer pnt; | ^~~ objmacro.c: In function ‘QuantityConstraintAsnRead’: objmacro.c:8904:12: warning: unused variable ‘isError’ [-Wunused-variable] 8904 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SequenceConstraintAsnRead’: objmacro.c:9104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9104 | AsnReadFunc func; | ^~~~ objmacro.c:9103:12: warning: unused variable ‘isError’ [-Wunused-variable] 9103 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TranslationConstraintAsnRead’: objmacro.c:9332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9332 | AsnReadFunc func; | ^~~~ objmacro.c:9331:12: warning: unused variable ‘isError’ [-Wunused-variable] 9331 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConstraintChoiceFree’: objmacro.c:9487:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 9487 | Pointer pnt; | ^~~ objmacro.c: In function ‘ConstraintChoiceAsnRead’: objmacro.c:9549:12: warning: unused variable ‘isError’ [-Wunused-variable] 9549 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConstraintChoiceSetAsnRead’: objmacro.c:9783:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9783 | AsnReadFunc func; | ^~~~ objmacro.c:9780:12: warning: unused variable ‘av’ [-Wunused-variable] 9780 | DataVal av; | ^~ objmacro.c: In function ‘TextMarkerFree’: objmacro.c:9879:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 9879 | Pointer pnt; | ^~~ objmacro.c: In function ‘TextMarkerAsnRead’: objmacro.c:9911:12: warning: unused variable ‘isError’ [-Wunused-variable] 9911 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TextPortionAsnRead’: objmacro.c:10109:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10109 | AsnReadFunc func; | ^~~~ objmacro.c:10108:12: warning: unused variable ‘isError’ [-Wunused-variable] 10108 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FieldEditAsnRead’: objmacro.c:10328:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10328 | AsnReadFunc func; | ^~~~ objmacro.c:10327:12: warning: unused variable ‘isError’ [-Wunused-variable] 10327 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FieldPairTypeFree’: objmacro.c:10478:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 10478 | Pointer pnt; | ^~~ objmacro.c: In function ‘FieldPairTypeAsnRead’: objmacro.c:10528:12: warning: unused variable ‘isError’ [-Wunused-variable] 10528 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ApplyActionAsnRead’: objmacro.c:10747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10747 | AsnReadFunc func; | ^~~~ objmacro.c:10746:12: warning: unused variable ‘isError’ [-Wunused-variable] 10746 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘EditActionAsnRead’: objmacro.c:10927:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10927 | AsnReadFunc func; | ^~~~ objmacro.c:10926:12: warning: unused variable ‘isError’ [-Wunused-variable] 10926 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TextTransformFree’: objmacro.c:11061:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 11061 | Pointer pnt; | ^~~ objmacro.c: In function ‘TextTransformAsnRead’: objmacro.c:11096:12: warning: unused variable ‘isError’ [-Wunused-variable] 11096 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TextTransformSetAsnRead’: objmacro.c:11269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11269 | AsnReadFunc func; | ^~~~ objmacro.c:11266:12: warning: unused variable ‘av’ [-Wunused-variable] 11266 | DataVal av; | ^~ objmacro.c: In function ‘ConvertActionAsnRead’: objmacro.c:11405:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11405 | AsnReadFunc func; | ^~~~ objmacro.c:11404:12: warning: unused variable ‘isError’ [-Wunused-variable] 11404 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CopyActionAsnRead’: objmacro.c:11600:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11600 | AsnReadFunc func; | ^~~~ objmacro.c:11599:12: warning: unused variable ‘isError’ [-Wunused-variable] 11599 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SwapActionAsnRead’: objmacro.c:11768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11768 | AsnReadFunc func; | ^~~~ objmacro.c:11767:12: warning: unused variable ‘isError’ [-Wunused-variable] 11767 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AECRParseActionAsnRead’: objmacro.c:11932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11932 | AsnReadFunc func; | ^~~~ objmacro.c:11931:12: warning: unused variable ‘isError’ [-Wunused-variable] 11931 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveActionAsnRead’: objmacro.c:12151:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12151 | AsnReadFunc func; | ^~~~ objmacro.c:12150:12: warning: unused variable ‘isError’ [-Wunused-variable] 12150 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveOutsideActionAsnRead’: objmacro.c:12312:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12312 | AsnReadFunc func; | ^~~~ objmacro.c:12311:12: warning: unused variable ‘isError’ [-Wunused-variable] 12311 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ActionChoiceFree’: objmacro.c:12455:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 12455 | Pointer pnt; | ^~~ objmacro.c: In function ‘ActionChoiceAsnRead’: objmacro.c:12508:12: warning: unused variable ‘isError’ [-Wunused-variable] 12508 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseSrcOrgChoiceFree’: objmacro.c:12697:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 12697 | Pointer pnt; | ^~~ objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’: objmacro.c:12726:12: warning: unused variable ‘isError’ [-Wunused-variable] 12726 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseSrcOrgAsnRead’: objmacro.c:12911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12911 | AsnReadFunc func; | ^~~~ objmacro.c:12910:12: warning: unused variable ‘isError’ [-Wunused-variable] 12910 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseSrcGeneralIdFree’: objmacro.c:13042:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 13042 | Pointer pnt; | ^~~ objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’: objmacro.c:13074:12: warning: unused variable ‘isError’ [-Wunused-variable] 13074 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseSrcFree’: objmacro.c:13232:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 13232 | Pointer pnt; | ^~~ objmacro.c: In function ‘ParseSrcAsnRead’: objmacro.c:13270:12: warning: unused variable ‘isError’ [-Wunused-variable] 13270 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseDstOrgAsnRead’: objmacro.c:13526:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 13526 | AsnReadFunc func; | ^~~~ objmacro.c:13525:12: warning: unused variable ‘isError’ [-Wunused-variable] 13525 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseDestFree’: objmacro.c:13657:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 13657 | Pointer pnt; | ^~~ objmacro.c: In function ‘ParseDestAsnRead’: objmacro.c:13695:12: warning: unused variable ‘isError’ [-Wunused-variable] 13695 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘LocationIntervalAsnRead’: objmacro.c:13905:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 13905 | AsnReadFunc func; | ^~~~ objmacro.c:13904:12: warning: unused variable ‘isError’ [-Wunused-variable] 13904 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘LocationChoiceFree’: objmacro.c:14033:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 14033 | Pointer pnt; | ^~~ objmacro.c: In function ‘LocationChoiceAsnRead’: objmacro.c:14065:12: warning: unused variable ‘isError’ [-Wunused-variable] 14065 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SequenceListAsnRead’: objmacro.c:14241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 14241 | AsnReadFunc func; | ^~~~ objmacro.c:14238:12: warning: unused variable ‘av’ [-Wunused-variable] 14238 | DataVal av; | ^~ objmacro.c: In function ‘SequenceListChoiceFree’: objmacro.c:14337:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 14337 | Pointer pnt; | ^~~ objmacro.c: In function ‘SequenceListChoiceAsnRead’: objmacro.c:14369:12: warning: unused variable ‘isError’ [-Wunused-variable] 14369 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ApplyFeatureActionAsnRead’: objmacro.c:14560:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 14560 | AsnReadFunc func; | ^~~~ objmacro.c:14559:12: warning: unused variable ‘isError’ [-Wunused-variable] 14559 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveFeatureActionAsnRead’: objmacro.c:14827:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 14827 | AsnReadFunc func; | ^~~~ objmacro.c:14826:12: warning: unused variable ‘isError’ [-Wunused-variable] 14826 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConvertFromCDSOptionsAsnRead’: objmacro.c:14994:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 14994 | AsnReadFunc func; | ^~~~ objmacro.c:14993:12: warning: unused variable ‘isError’ [-Wunused-variable] 14993 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConvertFeatureSrcOptionsFree’: objmacro.c:15131:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 15131 | Pointer pnt; | ^~~ objmacro.c: In function ‘ConvertFeatureSrcOptionsAsnRead’: objmacro.c:15163:12: warning: unused variable ‘isError’ [-Wunused-variable] 15163 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RegionTypeAsnRead’: objmacro.c:15332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 15332 | AsnReadFunc func; | ^~~~ objmacro.c:15331:12: warning: unused variable ‘isError’ [-Wunused-variable] 15331 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConvertFeatureDstOptionsFree’: objmacro.c:15451:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 15451 | Pointer pnt; | ^~~ objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’: objmacro.c:15486:12: warning: unused variable ‘isError’ [-Wunused-variable] 15486 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConvertFeatureActionAsnRead’: objmacro.c:15702:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 15702 | AsnReadFunc func; | ^~~~ objmacro.c:15701:12: warning: unused variable ‘isError’ [-Wunused-variable] 15701 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘EditLocationStrandAsnRead’: objmacro.c:15911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 15911 | AsnReadFunc func; | ^~~~ objmacro.c:15910:12: warning: unused variable ‘isError’ [-Wunused-variable] 15910 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘Partial5SetActionAsnRead’: objmacro.c:16075:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 16075 | AsnReadFunc func; | ^~~~ objmacro.c:16074:12: warning: unused variable ‘isError’ [-Wunused-variable] 16074 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘Partial3SetActionAsnRead’: objmacro.c:16239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 16239 | AsnReadFunc func; | ^~~~ objmacro.c:16238:12: warning: unused variable ‘isError’ [-Wunused-variable] 16238 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PartialBothSetActionAsnRead’: objmacro.c:16403:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 16403 | AsnReadFunc func; | ^~~~ objmacro.c:16402:12: warning: unused variable ‘isError’ [-Wunused-variable] 16402 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ExtendToFeatureAsnRead’: objmacro.c:16568:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 16568 | AsnReadFunc func; | ^~~~ objmacro.c:16567:12: warning: unused variable ‘isError’ [-Wunused-variable] 16567 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘LocationEditTypeFree’: objmacro.c:16708:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 16708 | Pointer pnt; | ^~~ objmacro.c: In function ‘LocationEditTypeAsnRead’: objmacro.c:16755:12: warning: unused variable ‘isError’ [-Wunused-variable] 16755 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘EditFeatureLocationActionAsnRead’: objmacro.c:17032:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17032 | AsnReadFunc func; | ^~~~ objmacro.c:17031:12: warning: unused variable ‘isError’ [-Wunused-variable] 17031 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoBlockAsnRead’: objmacro.c:17232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17232 | AsnReadFunc func; | ^~~~ objmacro.c:17231:12: warning: unused variable ‘isError’ [-Wunused-variable] 17231 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveDescriptorActionAsnRead’: objmacro.c:17415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17415 | AsnReadFunc func; | ^~~~ objmacro.c:17414:12: warning: unused variable ‘isError’ [-Wunused-variable] 17414 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AutodefActionAsnRead’: objmacro.c:17584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17584 | AsnReadFunc func; | ^~~~ objmacro.c: In function ‘FixPubCapsActionAsnRead’: objmacro.c:17758:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17758 | AsnReadFunc func; | ^~~~ objmacro.c:17757:12: warning: unused variable ‘isError’ [-Wunused-variable] 17757 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SortFieldsActionAsnRead’: objmacro.c:17963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17963 | AsnReadFunc func; | ^~~~ objmacro.c:17962:12: warning: unused variable ‘isError’ [-Wunused-variable] 17962 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FixAuthorCapsAsnRead’: objmacro.c:18142:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 18142 | AsnReadFunc func; | ^~~~ objmacro.c:18141:12: warning: unused variable ‘isError’ [-Wunused-variable] 18141 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FixCapsActionFree’: objmacro.c:18261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 18261 | Pointer pnt; | ^~~ objmacro.c: In function ‘FixCapsActionAsnRead’: objmacro.c:18296:12: warning: unused variable ‘isError’ [-Wunused-variable] 18296 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FixFormatActionFree’: objmacro.c:18470:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 18470 | Pointer pnt; | ^~~ objmacro.c: In function ‘FixFormatActionAsnRead’: objmacro.c:18499:12: warning: unused variable ‘isError’ [-Wunused-variable] 18499 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveDuplicateFeatureActionAsnRead’: objmacro.c:18705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 18705 | AsnReadFunc func; | ^~~~ objmacro.c:18704:12: warning: unused variable ‘isError’ [-Wunused-variable] 18704 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘GeneXrefTypeAsnRead’: objmacro.c:18899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 18899 | AsnReadFunc func; | ^~~~ objmacro.c:18898:12: warning: unused variable ‘isError’ [-Wunused-variable] 18898 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘XrefTypeFree’: objmacro.c:19036:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 19036 | Pointer pnt; | ^~~ objmacro.c: In function ‘XrefTypeAsnRead’: objmacro.c:19068:12: warning: unused variable ‘isError’ [-Wunused-variable] 19068 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveXrefsActionAsnRead’: objmacro.c:19239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 19239 | AsnReadFunc func; | ^~~~ objmacro.c:19238:12: warning: unused variable ‘isError’ [-Wunused-variable] 19238 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MakeGeneXrefActionAsnRead’: objmacro.c:19410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 19410 | AsnReadFunc func; | ^~~~ objmacro.c:19409:12: warning: unused variable ‘isError’ [-Wunused-variable] 19409 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AuthorFixActionAsnRead’: objmacro.c:19578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 19578 | AsnReadFunc func; | ^~~~ objmacro.c:19577:12: warning: unused variable ‘isError’ [-Wunused-variable] 19577 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘UpdateSequencesActionAsnRead’: objmacro.c:19747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 19747 | AsnReadFunc func; | ^~~~ objmacro.c:19746:12: warning: unused variable ‘isError’ [-Wunused-variable] 19746 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CreateTSAIdsSrcFree’: objmacro.c:19877:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 19877 | Pointer pnt; | ^~~ objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’: objmacro.c:19909:12: warning: unused variable ‘isError’ [-Wunused-variable] 19909 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CreateTSAIdsActionAsnRead’: objmacro.c:20092:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 20092 | AsnReadFunc func; | ^~~~ objmacro.c:20091:12: warning: unused variable ‘isError’ [-Wunused-variable] 20091 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AutofixActionAsnRead’: objmacro.c:20274:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 20274 | AsnReadFunc func; | ^~~~ objmacro.c:20273:12: warning: unused variable ‘isError’ [-Wunused-variable] 20273 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FixSetsActionFree’: objmacro.c:20395:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 20395 | Pointer pnt; | ^~~ objmacro.c: In function ‘FixSetsActionAsnRead’: objmacro.c:20424:12: warning: unused variable ‘isError’ [-Wunused-variable] 20424 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TableMatchTypeFree’: objmacro.c:20582:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 20582 | Pointer pnt; | ^~~ objmacro.c: In function ‘TableMatchTypeAsnRead’: objmacro.c:20614:12: warning: unused variable ‘isError’ [-Wunused-variable] 20614 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TableMatchAsnRead’: objmacro.c:20873:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 20873 | AsnReadFunc func; | ^~~~ objmacro.c:20872:12: warning: unused variable ‘isError’ [-Wunused-variable] 20872 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ApplyTableExtraDataFree’: objmacro.c:21004:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 21004 | Pointer pnt; | ^~~ objmacro.c: In function ‘ApplyTableExtraDataAsnRead’: objmacro.c:21033:12: warning: unused variable ‘isError’ [-Wunused-variable] 21033 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ApplyTableActionAsnRead’: objmacro.c:21210:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21210 | AsnReadFunc func; | ^~~~ objmacro.c:21209:12: warning: unused variable ‘isError’ [-Wunused-variable] 21209 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AddFileActionAsnRead’: objmacro.c:21411:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21411 | AsnReadFunc func; | ^~~~ objmacro.c:21410:12: warning: unused variable ‘isError’ [-Wunused-variable] 21410 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AddDescriptorListActionAsnRead’: objmacro.c:21582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21582 | AsnReadFunc func; | ^~~~ objmacro.c:21581:12: warning: unused variable ‘isError’ [-Wunused-variable] 21581 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveSequencesActionAsnRead’: objmacro.c:21753:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21753 | AsnReadFunc func; | ^~~~ objmacro.c:21752:12: warning: unused variable ‘isError’ [-Wunused-variable] 21752 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘UpdateReplacedEcNumbersActionAsnRead’: objmacro.c:21911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21911 | AsnReadFunc func; | ^~~~ objmacro.c:21910:12: warning: unused variable ‘isError’ [-Wunused-variable] 21910 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RetranslateCdsActionAsnRead’: objmacro.c:22084:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 22084 | AsnReadFunc func; | ^~~~ objmacro.c:22083:12: warning: unused variable ‘isError’ [-Wunused-variable] 22083 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AdjustFeaturesForGapsActionAsnRead’: objmacro.c:22239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 22239 | AsnReadFunc func; | ^~~~ objmacro.c:22238:12: warning: unused variable ‘isError’ [-Wunused-variable] 22238 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MacroActionChoiceFree’: objmacro.c:22412:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 22412 | Pointer pnt; | ^~~ objmacro.c: In function ‘MacroActionChoiceAsnRead’: objmacro.c:22522:12: warning: unused variable ‘isError’ [-Wunused-variable] 22522 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SearchFuncFree’: objmacro.c:23116:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 23116 | Pointer pnt; | ^~~ objmacro.c: In function ‘SearchFuncAsnRead’: objmacro.c:23154:12: warning: unused variable ‘isError’ [-Wunused-variable] 23154 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SimpleReplaceAsnRead’: objmacro.c:23425:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 23425 | AsnReadFunc func; | ^~~~ objmacro.c:23424:12: warning: unused variable ‘isError’ [-Wunused-variable] 23424 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ReplaceFuncFree’: objmacro.c:23564:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 23564 | Pointer pnt; | ^~~ objmacro.c: In function ‘ReplaceFuncAsnRead’: objmacro.c:23599:12: warning: unused variable ‘isError’ [-Wunused-variable] 23599 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ReplaceRuleAsnRead’: objmacro.c:23781:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 23781 | AsnReadFunc func; | ^~~~ objmacro.c:23780:12: warning: unused variable ‘isError’ [-Wunused-variable] 23780 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SuspectRuleAsnRead’: objmacro.c:23955:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 23955 | AsnReadFunc func; | ^~~~ objmacro.c:23954:12: warning: unused variable ‘isError’ [-Wunused-variable] 23954 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualChoiceAsnRead’: objmacro.c:3806:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3806 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘SourceQualValChoiceAsnRead’: objmacro.c:4182:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4182 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘MolinfoFieldAsnRead’: objmacro.c:4679:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4679 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘MolinfoFieldPairAsnRead’: objmacro.c:5883:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5883 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘StructuredCommentFieldAsnRead’: objmacro.c:6371:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6371 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FieldTypeAsnRead’: objmacro.c:8543:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8543 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ConstraintChoiceAsnRead’: objmacro.c:9631:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9631 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘TextTransformAsnRead’: objmacro.c:11149:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11149 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’: objmacro.c:13133:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13133 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FixCapsActionAsnRead’: objmacro.c:18363:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 18363 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FixFormatActionAsnRead’: objmacro.c:18565:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 18565 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FixSetsActionAsnRead’: objmacro.c:20483:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 20483 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘MacroActionChoiceAsnRead’: objmacro.c:22829:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 22829 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘LocationPosConstraintAsnRead’: objmacro.c:1491:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1491 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FeatQualChoiceAsnRead’: objmacro.c:2342:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2342 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘RnaFeatTypeAsnRead’: objmacro.c:3076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3076 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’: objmacro.c:7076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7076 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’: objmacro.c:8768:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8768 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘QuantityConstraintAsnRead’: objmacro.c:8963:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8963 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘TextMarkerAsnRead’: objmacro.c:9970:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9970 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FieldPairTypeAsnRead’: objmacro.c:10594:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10594 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ActionChoiceAsnRead’: objmacro.c:12578:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12578 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’: objmacro.c:12778:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12778 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ParseSrcAsnRead’: objmacro.c:13365:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13365 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ParseDestAsnRead’: objmacro.c:13762:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13762 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘LocationChoiceAsnRead’: objmacro.c:14121:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 14121 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘SequenceListChoiceAsnRead’: objmacro.c:14418:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 14418 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’: objmacro.c:15556:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 15556 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘LocationEditTypeAsnRead’: objmacro.c:16859:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16859 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’: objmacro.c:19958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 19958 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘TableMatchTypeAsnRead’: objmacro.c:20712:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 20712 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘SearchFuncAsnRead’: objmacro.c:23259:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23259 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ReplaceFuncAsnRead’: objmacro.c:23648:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23648 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objent2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objent2.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objent2.c: In function ‘Entrez2IdListAsnRead’: objent2.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objent2.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable] 86 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2BooleanExpAsnRead’: objent2.c:277:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 277 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2BooleanElementFree’: objent2.c:416:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 416 | Pointer pnt; | ^~~ objent2.c: In function ‘Entrez2BooleanElementAsnRead’: objent2.c:457:12: warning: unused variable ‘isError’ [-Wunused-variable] 457 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2LimitsAsnRead’: objent2.c:666:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 666 | AsnReadFunc func; | ^~~~ objent2.c:665:12: warning: unused variable ‘isError’ [-Wunused-variable] 665 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2BooleanTermAsnRead’: objent2.c:844:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 844 | AsnReadFunc func; | ^~~~ objent2.c:843:12: warning: unused variable ‘isError’ [-Wunused-variable] 843 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2RequestAsnRead’: objent2.c:1041:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1041 | AsnReadFunc func; | ^~~~ objent2.c:1040:12: warning: unused variable ‘isError’ [-Wunused-variable] 1040 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘E2RequestFree’: objent2.c:1203:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1203 | Pointer pnt; | ^~~ objent2.c: In function ‘E2RequestAsnRead’: objent2.c:1256:12: warning: unused variable ‘isError’ [-Wunused-variable] 1256 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2EvalBooleanAsnRead’: objent2.c:1493:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1493 | AsnReadFunc func; | ^~~~ objent2.c:1492:12: warning: unused variable ‘isError’ [-Wunused-variable] 1492 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2TermQueryAsnRead’: objent2.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1670 | AsnReadFunc func; | ^~~~ objent2.c:1669:12: warning: unused variable ‘isError’ [-Wunused-variable] 1669 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2TermPosAsnRead’: objent2.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1849 | AsnReadFunc func; | ^~~~ objent2.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable] 1848 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2HierQueryAsnRead’: objent2.c:2036:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2036 | AsnReadFunc func; | ^~~~ objent2.c:2035:12: warning: unused variable ‘isError’ [-Wunused-variable] 2035 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2GetLinksAsnRead’: objent2.c:2224:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2224 | AsnReadFunc func; | ^~~~ objent2.c:2223:12: warning: unused variable ‘isError’ [-Wunused-variable] 2223 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2IdAsnRead’: objent2.c:2419:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2419 | AsnReadFunc func; | ^~~~ objent2.c:2418:12: warning: unused variable ‘isError’ [-Wunused-variable] 2418 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2DtFilterAsnRead’: objent2.c:2584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2584 | AsnReadFunc func; | ^~~~ objent2.c:2583:12: warning: unused variable ‘isError’ [-Wunused-variable] 2583 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2ReplyAsnRead’: objent2.c:2762:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2762 | AsnReadFunc func; | ^~~~ objent2.c:2761:12: warning: unused variable ‘isError’ [-Wunused-variable] 2761 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘E2ReplyFree’: objent2.c:2935:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2935 | Pointer pnt; | ^~~ objent2.c: In function ‘E2ReplyAsnRead’: objent2.c:2991:12: warning: unused variable ‘isError’ [-Wunused-variable] 2991 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2InfoAsnRead’: objent2.c:3237:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3237 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2BooleanReplyAsnRead’: objent2.c:3409:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3409 | AsnReadFunc func; | ^~~~ objent2.c:3408:12: warning: unused variable ‘isError’ [-Wunused-variable] 3408 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2DocsumListAsnRead’: objent2.c:3587:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3587 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2TermListAsnRead’: objent2.c:3749:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3749 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2HierNodeAsnRead’: objent2.c:3922:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3922 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2LinkSetAsnRead’: objent2.c:4122:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4122 | AsnReadFunc func; | ^~~~ objent2.c:4121:12: warning: unused variable ‘isError’ [-Wunused-variable] 4121 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2LinkCountListAsnRead’: objent2.c:4299:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4299 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2DbInfoAsnRead’: objent2.c:4466:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4466 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2FieldInfoAsnRead’: objent2.c:4706:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4706 | AsnReadFunc func; | ^~~~ objent2.c:4705:12: warning: unused variable ‘isError’ [-Wunused-variable] 4705 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2LinkInfoAsnRead’: objent2.c:4950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4950 | AsnReadFunc func; | ^~~~ objent2.c:4949:12: warning: unused variable ‘isError’ [-Wunused-variable] 4949 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2DocsumFieldInfoAsnRead’: objent2.c:5149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5149 | AsnReadFunc func; | ^~~~ objent2.c:5148:12: warning: unused variable ‘isError’ [-Wunused-variable] 5148 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2DocsumAsnRead’: objent2.c:5325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5325 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2DocsumDataAsnRead’: objent2.c:5488:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5488 | AsnReadFunc func; | ^~~~ objent2.c:5487:12: warning: unused variable ‘isError’ [-Wunused-variable] 5487 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2TermAsnRead’: objent2.c:5655:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5655 | AsnReadFunc func; | ^~~~ objent2.c:5654:12: warning: unused variable ‘isError’ [-Wunused-variable] 5654 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2LinkCountAsnRead’: objent2.c:5838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5838 | AsnReadFunc func; | ^~~~ objent2.c:5837:12: warning: unused variable ‘isError’ [-Wunused-variable] 5837 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2BooleanElementAsnRead’: objent2.c:524:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 524 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objent2.c: In function ‘E2RequestAsnRead’: objent2.c:1333:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1333 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objent2.c: In function ‘E2ReplyAsnRead’: objent2.c:3075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3075 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ent2api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ent2api.h:45, from ent2api.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pmfapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from pmfapi.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pmfapi.c:2813:24: warning: ‘SortByInt4’ defined but not used [-Wunused-function] 2813 | static int LIBCALLBACK SortByInt4 (VoidPtr vp1, VoidPtr vp2) | ^~~~~~~~~~ pmfapi.c: In function ‘ConfirmAccStrInSep’: pmfapi.c:1314:3: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1314 | SeqIdFree (tmp); | ^~~~~~~~~~~~~~~ pmfapi.c: In function ‘PubMedSynchronousQuery’: pmfapi.c:1224:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1224 | printf ("PubMedWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘PubSeqSynchronousQueryEx’: pmfapi.c:1479:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1479 | printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘PubSeqSynchronousQueryTI’: pmfapi.c:1663:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1663 | printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘PubSeqSynchronousQuerySRA’: pmfapi.c:1744:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1744 | printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘GiRevHistSynchronousQuery’: pmfapi.c:1817:61: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1817 | printf ("GiRevHistWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘GiAccVerSynchronousQuery’: pmfapi.c:1869:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1869 | printf ("GiAccVerWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘AccnRevHistSynchronousQuery’: pmfapi.c:1920:63: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1920 | printf ("AccnRevHistWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘GiSeqIdSetSynchronousQuery’: pmfapi.c:1971:62: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1971 | printf ("GiSeqIdSetWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘AccnListSynchronousQuery’: pmfapi.c:2021:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021 | printf ("AccnListWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtax3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtax3.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objtax3.c: In function ‘Taxon3RequestAsnRead’: objtax3.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 86 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘T3RequestFree’: objtax3.c:200:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 200 | Pointer pnt; | ^~~ objtax3.c: In function ‘SequenceOfIntAsnRead’: objtax3.c:418:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 418 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘Taxon3ReplyAsnRead’: objtax3.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 547 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘T3ReplyFree’: objtax3.c:661:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 661 | Pointer pnt; | ^~~ objtax3.c: In function ‘T3ErrorAsnRead’: objtax3.c:872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 872 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘T3DataAsnRead’: objtax3.c:1072:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1072 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘Value_valueFree’: objtax3.c:1253:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1253 | Pointer pnt; | ^~~ objtax3.c: In function ‘T3StatusFlagsAsnRead’: objtax3.c:1283:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1283 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘T3RefreshFlagsAsnRead’: objtax3.c:1608:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1608 | AsnReadFunc func; | ^~~~ In file included from ../include/strimprt.h:72, from objtax3.c:5: objtax3.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from objtax3.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from objtax3.c:5: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from objtax3.c:5: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objtax3.c: In function ‘T3RequestAsnRead’: objtax3.c:297:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 297 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtax3.c: In function ‘T3ReplyAsnRead’: objtax3.c:741:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 741 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtax3.c: In function ‘T3StatusFlagsAsnRead’: objtax3.c:1421:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1421 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtax3.c:1362:10: note: ‘choice’ was declared here 1362 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tax3api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from tax3api.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ tax3api.c: In function ‘Tax3SynchronousQuery’: tax3api.c:189:27: warning: variable ‘t3’ set but not used [-Wunused-but-set-variable] 189 | time_t t1, t2, t3; | ^~ tax3api.c: In function ‘CheckSuggestedFixes’: tax3api.c:1030:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable] 1030 | T3ErrorPtr tep; | ^~~ tax3api.c: In function ‘TryNewSuggestedFixes’: tax3api.c:1142:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable] 1142 | T3ErrorPtr tep; | ^~~ tax3api.c: In function ‘RemoveSpeciesSpecific’: tax3api.c:1398:13: warning: unused variable ‘cp’ [-Wunused-variable] 1398 | CharPtr cp; | ^~ At top level: tax3api.c:3399:13: warning: ‘AddBioSourcesToChecklist’ defined but not used [-Wunused-function] 3399 | static void AddBioSourcesToChecklist (ValNodePtr biop_list, ValNodePtr check_list) | ^~~~~~~~~~~~~~~~~~~~~~~~ tax3api.c:2699:16: warning: ‘MatchesGenBankSynonym’ defined but not used [-Wunused-function] 2699 | static Boolean MatchesGenBankSynonym (CharPtr txt, OrgRefPtr response_org) | ^~~~~~~~~~~~~~~~~~~~~ tax3api.c:2682:16: warning: ‘MatchesSynonym’ defined but not used [-Wunused-function] 2682 | static Boolean MatchesSynonym (CharPtr txt, OrgRefPtr response_org) | ^~~~~~~~~~~~~~ tax3api.c:2273:16: warning: ‘EndsWithSp’ defined but not used [-Wunused-function] 2273 | static Boolean EndsWithSp (CharPtr str) | ^~~~~~~~~~ tax3api.c:990:19: warning: ‘MakeTaxFixRequestList’ defined but not used [-Wunused-function] 990 | static ValNodePtr MakeTaxFixRequestList (ValNodePtr biop_list) | ^~~~~~~~~~~~~~~~~~~~~ tax3api.c:362:16: warning: ‘HasMisspellingFlag’ defined but not used [-Wunused-function] 362 | static Boolean HasMisspellingFlag (T3DataPtr t) | ^~~~~~~~~~~~~~~~~~ tax3api.c:298:13: warning: ‘SaveTaxon3Request’ defined but not used [-Wunused-function] 298 | static void SaveTaxon3Request (Taxon3RequestPtr t3rp, CharPtr path) | ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objegkludge.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objegkludge.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentgene.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objentgene.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objentgene.c: In function ‘EntrezgeneAsnRead’: objentgene.c:103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 103 | AsnReadFunc func; | ^~~~ objentgene.c: In function ‘EntrezgeneSetAsnRead’: objentgene.c:412:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 412 | AsnReadFunc func; | ^~~~ objentgene.c:409:12: warning: unused variable ‘av’ [-Wunused-variable] 409 | DataVal av; | ^~ objentgene.c: In function ‘GeneTrackAsnRead’: objentgene.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 547 | AsnReadFunc func; | ^~~~ objentgene.c: In function ‘GeneCommentaryAsnRead’: objentgene.c:768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 768 | AsnReadFunc func; | ^~~~ objentgene.c: In function ‘Method_methodFree’: objentgene.c:1073:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1073 | Pointer pnt; | ^~~ objentgene.c: In function ‘MapsAsnRead’: objentgene.c:1104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1104 | AsnReadFunc func; | ^~~~ objentgene.c:1103:12: warning: unused variable ‘isError’ [-Wunused-variable] 1103 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘Method_methodAsnRead’: objentgene.c:1184:12: warning: unused variable ‘isError’ [-Wunused-variable] 1184 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘GeneSourceAsnRead’: objentgene.c:1426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1426 | AsnReadFunc func; | ^~~~ objentgene.c:1425:12: warning: unused variable ‘isError’ [-Wunused-variable] 1425 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘XtraTermsAsnRead’: objentgene.c:1641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1641 | AsnReadFunc func; | ^~~~ objentgene.c:1640:12: warning: unused variable ‘isError’ [-Wunused-variable] 1640 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘OtherSourceAsnRead’: objentgene.c:1812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1812 | AsnReadFunc func; | ^~~~ objentgene.c:1811:12: warning: unused variable ‘isError’ [-Wunused-variable] 1811 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘MapsAsnRead’: objentgene.c:1236:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1236 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objentgene.c:1183:10: note: ‘choice’ was declared here 1183 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmla2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmla2.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmla2.c: In function ‘Mla2RequestFree’: objmla2.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 49 | Pointer pnt; | ^~~ objmla2.c: In function ‘Mla22RequestAsnRead’: objmla2.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable] 96 | Boolean isError = FALSE; | ^~~~~~~ objmla2.c: In function ‘TitleMsg2AsnRead’: objmla2.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 447 | AsnReadFunc func; | ^~~~ objmla2.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable] 446 | Boolean isError = FALSE; | ^~~~~~~ objmla2.c: In function ‘TitleMsgList2AsnRead’: objmla2.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 613 | AsnReadFunc func; | ^~~~ objmla2.c: In function ‘Mla22RequestAsnRead’: objmla2.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 249 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmla2.c: In function ‘Mla2BackAsnRead’: objmla2.c:904:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 904 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mla2api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/mla2api.h:45, from mla2api.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF qblastapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from qblastapi.c:123: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ qblastapi.c: In function ‘SecondQBlastCallback’: qblastapi.c:262:15: warning: variable ‘waiting’ set but not used [-Wunused-but-set-variable] 262 | Boolean waiting = FALSE; | ^~~~~~~ qblastapi.c: In function ‘BLASTGetSeqAnnotByRIDEx’: qblastapi.c:826:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 826 | EIO_Status status; | ^~~~~~ qblastapi.c: In function ‘BLASTGetQueryBioseqByRIDEx’: qblastapi.c:871:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 871 | EIO_Status status; | ^~~~~~ qblastapi.c: In function ‘QBlastCheckQueue’: qblastapi.c:688:36: warning: ‘&FORMAT_OBJECT=Alignment&FOR...’ directive writing 43 bytes into a region of size between 5 and 68 [-Wformat-overflow=] 688 | sprintf (str, "CMD=Get&RID=%s&FORMAT_OBJECT=Alignment&FORMAT_TYPE=ASN.1\n", curr->rid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from qblastapi.c:123: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 56 and 119 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vecscnapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from vecscnapi.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmim.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmim.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmim.c: In function ‘MimSetAsnRead’: objmim.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 86 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimDateAsnRead’: objmim.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 248 | AsnReadFunc func; | ^~~~ objmim.c:247:12: warning: unused variable ‘isError’ [-Wunused-variable] 247 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimEntryAsnRead’: objmim.c:448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 448 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimCitAsnRead’: objmim.c:909:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 909 | AsnReadFunc func; | ^~~~ objmim.c:908:12: warning: unused variable ‘isError’ [-Wunused-variable] 908 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimTextAsnRead’: objmim.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1096 | AsnReadFunc func; | ^~~~ objmim.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable] 1095 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimEditItemAsnRead’: objmim.c:1276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1276 | AsnReadFunc func; | ^~~~ objmim.c:1275:12: warning: unused variable ‘isError’ [-Wunused-variable] 1275 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimAllelicVariantAsnRead’: objmim.c:1448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1448 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimIndexTermAsnRead’: objmim.c:1640:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1640 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimReferenceAsnRead’: objmim.c:1819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1819 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimLinkAsnRead’: objmim.c:2195:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2195 | AsnReadFunc func; | ^~~~ objmim.c:2194:12: warning: unused variable ‘isError’ [-Wunused-variable] 2194 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimAuthorAsnRead’: objmim.c:2369:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2369 | AsnReadFunc func; | ^~~~ objmim.c:2368:12: warning: unused variable ‘isError’ [-Wunused-variable] 2368 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimPageAsnRead’: objmim.c:2535:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2535 | AsnReadFunc func; | ^~~~ objmim.c:2534:12: warning: unused variable ‘isError’ [-Wunused-variable] 2534 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objvalid.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objvalid.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objvalid.c: In function ‘FieldRuleAsnRead’: objvalid.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 88 | AsnReadFunc func; | ^~~~ objvalid.c:87:12: warning: unused variable ‘isError’ [-Wunused-variable] 87 | Boolean isError = FALSE; | ^~~~~~~ objvalid.c: In function ‘FieldSetAsnRead’: objvalid.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 259 | AsnReadFunc func; | ^~~~ objvalid.c:256:12: warning: unused variable ‘av’ [-Wunused-variable] 256 | DataVal av; | ^~ objvalid.c: In function ‘DependentFieldRuleAsnRead’: objvalid.c:396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 396 | AsnReadFunc func; | ^~~~ objvalid.c:395:12: warning: unused variable ‘isError’ [-Wunused-variable] 395 | Boolean isError = FALSE; | ^~~~~~~ objvalid.c: In function ‘DependentFieldSetAsnRead’: objvalid.c:582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 582 | AsnReadFunc func; | ^~~~ objvalid.c:579:12: warning: unused variable ‘av’ [-Wunused-variable] 579 | DataVal av; | ^~ objvalid.c: In function ‘CommentRuleAsnRead’: objvalid.c:721:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 721 | AsnReadFunc func; | ^~~~ objvalid.c:720:12: warning: unused variable ‘isError’ [-Wunused-variable] 720 | Boolean isError = FALSE; | ^~~~~~~ objvalid.c: In function ‘CommentSetAsnRead’: objvalid.c:926:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 926 | AsnReadFunc func; | ^~~~ objvalid.c:923:12: warning: unused variable ‘av’ [-Wunused-variable] 923 | DataVal av; | ^~ objvalid.c: In function ‘PhraseListAsnRead’: objvalid.c:1043:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1043 | AsnReadFunc func; | ^~~~ objvalid.c:1040:12: warning: unused variable ‘av’ [-Wunused-variable] 1040 | DataVal av; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mimapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mimapi.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cddapi.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqport.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from seqport.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqport.c: In function ‘productLoc_to_locationLoc’: seqport.c:4260:13: warning: variable ‘is_cdregion’ set but not used [-Wunused-but-set-variable] 4260 | Boolean is_cdregion = FALSE; | ^~~~~~~~~~~ seqport.c: In function ‘NaLocFromNaInterval’: seqport.c:4590:8: warning: variable ‘p_end_pos’ set but not used [-Wunused-but-set-variable] 4590 | Int4 p_end_pos; /*the end of the product sequence in the current loc*/ | ^~~~~~~~~ seqport.c: In function ‘dnaLoc_to_aaLoc’: seqport.c:4706:18: warning: variable ‘cds_right’ set but not used [-Wunused-but-set-variable] 4706 | Int4 cds_left, cds_right; | ^~~~~~~~~ seqport.c:4706:8: warning: variable ‘cds_left’ set but not used [-Wunused-but-set-variable] 4706 | Int4 cds_left, cds_right; | ^~~~~~~~ seqport.c: In function ‘DeltaRevComp’: seqport.c:5388:21: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable] 5388 | DeltaSeqPtr dsp, dspnext; | ^~~~~~~ seqport.c: In function ‘SeqSearchEnterNucWord’: seqport.c:6943:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable] 6943 | Int2 next, patLen, state; | ^~~~~~ seqport.c: In function ‘ProtSearchEnterProtWord’: seqport.c:7817:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable] 7817 | Int2 next, patLen, state; | ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from seqport.c:62: seqport.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sequtil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from sequtil.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequtil.c: In function ‘GetPointsForLeftAndRightOffsets’: sequtil.c:7994:11: warning: variable ‘first_strand’ set but not used [-Wunused-but-set-variable] 7994 | Uint1 first_strand, last_strand; | ^~~~~~~~~~~~ sequtil.c: In function ‘SeqPointWriteEx’: sequtil.c:8532:15: warning: variable ‘fuzzlen’ set but not used [-Wunused-but-set-variable] 8532 | Int4 fuzzlen, id_len; | ^~~~~~~ sequtil.c: In function ‘TaxNameFromCommon’: sequtil.c:8687:42: warning: missing braces around initializer [-Wmissing-braces] 8687 | static Nlm_TaxCommon taxcommon[40] = { | ^ 8688 | "Chinese hamsters", "Cricetulus sp." | { 8689 | ,"Syrian golden hamsters", "Mesocricetus auratus" | }{ 8690 | ,"Syrian hamsters", "Mesocricetus sp." | }{ 8691 | ,"barley", "Hordeum sp." | }{ 8692 | ,"carrots", "Daucus sp." | }{ 8693 | ,"cats", "Felis sp." | }{ 8694 | ,"cattles", "Bos sp." | }{ 8695 | ,"chickens", "Gallus sp." | }{ 8696 | ,"chimpanzees", "Pan sp." | }{ 8697 | ,"chimpanzes", "Pan sp." | }{ 8698 | ,"corn", "Zea sp." | }{ 8699 | ,"cucumber", "Cucumis sativus" | }{ 8700 | ,"dogs", "Canis sp." | }{ 8701 | ,"goats", "Capra sp." | }{ 8702 | ,"gorillas", "Gorilla sp." | }{ 8703 | ,"guinea pigs", "Cavia sp." | }{ 8704 | ,"hamsters", "Cricetidae gen. sp." | }{ 8705 | ,"horses", "Equus sp." | }{ 8706 | ,"humans", "Homo sapiens" | }{ 8707 | ,"maize", "Zea sp." | }{ 8708 | ,"mice", "Mus sp." | }{ 8709 | ,"mouse", "Mus sp." | }{ 8710 | ,"peas", "Pisum sp." | }{ 8711 | ,"potatoes", "Solanum sp." | }{ 8712 | ,"potato", "Solanum sp." | }{ 8713 | ,"quails", "Phasianidae gen. sp." | }{ 8714 | ,"rabbits", "Oryctolagus sp." | }{ 8715 | ,"rats", "Rattus sp." | }{ 8716 | ,"rices", "Oryza sp." | }{ 8717 | ,"sheeps", "Ovis sp." | }{ 8718 | ,"sorghums", "Sorghum sp." | }{ 8719 | ,"soybeans", "Glycine sp." | }{ 8720 | ,"spinach", "Spinacia sp." | }{ 8721 | ,"swine", "Sus sp." | }{ 8722 | ,"tobacco", "Nicotiania sp." | }{ 8723 | ,"tomatoes", "Lycopersicon sp." | }{ 8724 | ,"tomato", "Lycopersicon sp." | }{ 8725 | ,"turkeys", "Meleagris sp." | }{ 8726 | ,"wheat", "Triticum sp." | }{ 8727 | ,"zebrafish", "Brachydanio sp." | }{ 8728 | }; | } sequtil.c: In function ‘GetBestScoreAndEvalueFromScorePtr’: sequtil.c:9510:48: warning: variable ‘sum_set’ set but not used [-Wunused-but-set-variable] 9510 | Boolean score_set=FALSE, evalue_set=FALSE, sum_set=FALSE, bit_set=FALSE; | ^~~~~~~ sequtil.c: In function ‘SeqIdFromAccessionEx’: sequtil.c:10110:38: warning: variable ‘sip2’ set but not used [-Wunused-but-set-variable] 10110 | SeqIdPtr sip2; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prtutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objprt.h:67, from ../include/prtutil.h:69, from prtutil.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ prtutil.c: In function ‘StdFormatPrint’: prtutil.c:1422:10: warning: unused variable ‘ptr’ [-Wunused-variable] 1422 | CharPtr ptr = NULL; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF simple.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/simple.h:63, from simple.c:68: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from simple.c:69: ../include/all.h:7293: warning: "RNA_QUAL" redefined 7293 | #define RNA_QUAL &at[2254] | ../include/all.h:5823: note: this is the location of the previous definition 5823 | #define RNA_QUAL &at[1025] | arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofasta.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/tofasta.h:47, from tofasta.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ tofasta.c: In function ‘DoSpecialDefline’: tofasta.c:1461:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable] 1461 | SeqFeatPtr gene = NULL; | ^~~~ tofasta.c: In function ‘FastaIdEx’: tofasta.c:3100:15: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable] 3100 | SeqIdPtr sip; | ^~~ tofasta.c: In function ‘CreateDefLineExEx’: tofasta.c:4991:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 4991 | if (vnp != NULL) | ^~ tofasta.c:4993:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 4993 | if (title != NULL) { | ^~ tofasta.c: In function ‘x_SetSuffix’: tofasta.c:8313:24: warning: variable ‘buf2’ set but not used [-Wunused-but-set-variable] 8313 | Char buf1 [512], buf2 [256]; | ^~~~ tofasta.c: In function ‘FastaToSeqEntryInternalExEx’: tofasta.c:2838:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2838 | fgets(buffer+1, BuffSize, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tofasta.c:2863:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2863 | fgets(buffer+i+1, FTSE_BUFF_CHUNK, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: tofasta.c:8058:17: warning: ‘x_StringInList’ defined but not used [-Wunused-function] 8058 | static Boolean x_StringInList ( | ^~~~~~~~~~~~~~ tofasta.c:3661:19: warning: ‘GatherGenesForCDS’ defined but not used [-Wunused-function] 3661 | static ValNodePtr GatherGenesForCDS(SeqLocPtr slp) | ^~~~~~~~~~~~~~~~~ tofasta.c:3627:19: warning: ‘GatherSeqFeatProt’ defined but not used [-Wunused-function] 3627 | static SeqFeatPtr GatherSeqFeatProt(BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~ tofasta.c:3541:19: warning: ‘GetCDSProtUnindexed’ defined but not used [-Wunused-function] 3541 | static SeqFeatPtr GetCDSProtUnindexed ( | ^~~~~~~~~~~~~~~~~~~ tofasta.c:3378:19: warning: ‘IndexedGatherDescrOnBioseq’ defined but not used [-Wunused-function] 3378 | static ValNodePtr IndexedGatherDescrOnBioseq (ItemInfoPtr iip, BioseqPtr bsp, Uint1 choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ tofasta.c:3283:16: warning: ‘get_descr’ defined but not used [-Wunused-function] 3283 | static Boolean get_descr (GatherContextPtr gcp) | ^~~~~~~~~ tofasta.c:3254:16: warning: ‘get_descr_on_top’ defined but not used [-Wunused-function] 3254 | static Boolean get_descr_on_top (GatherContextPtr gcp) | ^~~~~~~~~~~~~~~~ tofasta.c: In function ‘FastaReadSequenceInternalEx’: tofasta.c:2713:27: warning: ‘mask_to’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2713 | mask_sint->to = mask_to; | ~~~~~~~~~~~~~~^~~~~~~~~ tofasta.c: In function ‘FastaToSeqEntryInternalExEx’: tofasta.c:2774:25: warning: ‘firstchar’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2774 | const Char PNTR firstchar; | ^~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofile.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from tofile.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tomedlin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmedli.h:80, from tomedlin.c:153: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valid.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from valid.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ valid.c: In function ‘GetUserFieldValueString’: valid.c:2212:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 2212 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld valid.c: In function ‘ValidateSeqIdCase’: valid.c:3574:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable] 3574 | GatherContextPtr gcp; | ^~~ valid.c: In function ‘ValidateGenProdSet’: valid.c:6046:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 6046 | GeneRefPtr grp; | ^~~ valid.c: In function ‘CountAdjacentProc’: valid.c:6730:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable] 6730 | GatherContextPtr gcp; | ^~~ valid.c: In function ‘CheckBioseqEndsForNAndGap’: valid.c:7040:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 7040 | if (str [0] == 'n' || str [0] == 'N' && begin_n != NULL) { | ^ valid.c:7061:56: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 7061 | if (str [len - 1] == 'n' || str [len - 1] == 'N' && end_n != NULL) { | ^ valid.c: In function ‘ValidateBioseqInst’: valid.c:7341:19: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable] 7341 | Uint1 tech; | ^~~~ valid.c:7278:19: warning: variable ‘prot’ set but not used [-Wunused-but-set-variable] 7278 | SeqFeatPtr prot; | ^~~~ valid.c: In function ‘FixOrgModVoucher’: valid.c:13882:22: warning: unused variable ‘allowed_type’ [-Wunused-variable] 13882 | Uint1 type = 0, allowed_type = 0; | ^~~~~~~~~~~~ valid.c: In function ‘ValidateBioSource’: valid.c:15514:19: warning: variable ‘isMicrosporidia’ set but not used [-Wunused-but-set-variable] 15514 | Boolean isMicrosporidia = FALSE; | ^~~~~~~~~~~~~~~ valid.c:15512:19: warning: variable ‘isEukaryote’ set but not used [-Wunused-but-set-variable] 15512 | Boolean isEukaryote = FALSE; | ^~~~~~~~~~~ valid.c:15503:19: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] 15503 | Int4 id; | ^~ valid.c: In function ‘ValidateDblink’: valid.c:16786:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable] 16786 | GatherContextPtr gcp; | ^~~ valid.c: In function ‘ValidateSeqDescrCommon’: valid.c:16883:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable] 16883 | PubdescPtr pdp; | ^~~ valid.c: In function ‘GetFeatsInGaps’: valid.c:18858:21: warning: variable ‘realBases’ set but not used [-Wunused-but-set-variable] 18858 | Int4 realBases; | ^~~~~~~~~ valid.c:18857:21: warning: variable ‘plusses’ set but not used [-Wunused-but-set-variable] 18857 | Int4 plusses; | ^~~~~~~ valid.c:18854:21: warning: variable ‘Ns’ set but not used [-Wunused-but-set-variable] 18854 | Int4 Ns; | ^~ valid.c:18851:21: warning: variable ‘dashes’ set but not used [-Wunused-but-set-variable] 18851 | Int4 dashes; | ^~~~~~ valid.c: In function ‘ValidateBioseqContextIndexed’: valid.c:20267:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 20267 | if (bvsp->is_mrna || cdscount == 1 && genecount < 2) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ valid.c:19476:65: warning: variable ‘cdsmgene’ set but not used [-Wunused-but-set-variable] 19476 | SeqFeatPtr utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene; | ^~~~~~~~ valid.c:19476:33: warning: variable ‘cdspgene’ set but not used [-Wunused-but-set-variable] 19476 | SeqFeatPtr utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene; | ^~~~~~~~ valid.c:19475:51: warning: variable ‘utr5minus’ set but not used [-Wunused-but-set-variable] 19475 | SeqFeatPtr utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus; | ^~~~~~~~~ valid.c:19475:41: warning: variable ‘utr3plus’ set but not used [-Wunused-but-set-variable] 19475 | SeqFeatPtr utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus; | ^~~~~~~~ valid.c:19442:41: warning: variable ‘utr3gene’ set but not used [-Wunused-but-set-variable] 19442 | SeqFeatPtr cdsgene, utr5gene, utr3gene; | ^~~~~~~~ valid.c: In function ‘ReportBadWGSGap’: valid.c:21153:18: warning: unused variable ‘is_wgs’ [-Wunused-variable] 21153 | Boolean is_wgs = FALSE; | ^~~~~~ valid.c: In function ‘ValidateBarcodeIndexNumber’: valid.c:21432:21: warning: variable ‘bin_len’ set but not used [-Wunused-but-set-variable] 21432 | Int4 bin_len; | ^~~~~~~ valid.c: In function ‘ValidateRptUnit’: valid.c:23411:32: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 23411 | Boolean badchars, found, just_nuc_letters, multi_rpt_unit, in_range; | ^~~~~ valid.c: In function ‘CheckForCommonCDSProduct’: valid.c:25628:19: warning: variable ‘is_nw’ set but not used [-Wunused-but-set-variable] 25628 | Boolean is_nw = FALSE; | ^~~~~ valid.c:25625:19: warning: variable ‘is_nc’ set but not used [-Wunused-but-set-variable] 25625 | Boolean is_nc = FALSE; | ^~~~~ valid.c: In function ‘CheckForIllegalDbxref’: valid.c:26017:16: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] 26017 | Int4 id; | ^~ valid.c: In function ‘ValidateAnticodon’: valid.c:26781:53: warning: variable ‘circular’ set but not used [-Wunused-but-set-variable] 26781 | ordered = TRUE, adjacent = FALSE, circular = FALSE, exception = FALSE; | ^~~~~~~~ valid.c:26780:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 26780 | Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE, | ^~~~~~ valid.c: In function ‘IsGeneXrefRedundant’: valid.c:28000:17: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 28000 | Int2 count; | ^~~~~ valid.c: In function ‘ValidateSeqFeat’: valid.c:28328:19: warning: unused variable ‘is_nc’ [-Wunused-variable] 28328 | Boolean is_nc = FALSE; | ^~~~~ valid.c:28308:19: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 28308 | Int2 count; | ^~~~~ valid.c:28286:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable] 28286 | PubdescPtr pdp; | ^~~ valid.c: In function ‘CdTransCheck’: valid.c:30490:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 30490 | GeneRefPtr grp; | ^~~ valid.c: In function ‘SpliceCheckEx’: valid.c:31313:19: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 31313 | SeqEntryPtr sep; | ^~~ valid.c: In function ‘CdsProductIdCheck’: valid.c:31689:15: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 31689 | GeneRefPtr grp; | ^~~ valid.c: In function ‘ValidateSeqLoc’: valid.c:31754:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 31754 | Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE, | ^~~~~~ valid.c:31753:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 31753 | SeqLocPtr tmp, prev; | ^~~~ valid.c: In function ‘SortSeqGraphProc’: valid.c:32156:26: warning: self-comparison always evaluates to false [-Wtautological-compare] 32156 | } else if (gip2->right < gip2->right) { | ^ At top level: valid.c:30138:13: warning: ‘ValidateTranslExcept’ defined but not used [-Wunused-function] 30138 | static void ValidateTranslExcept ( | ^~~~~~~~~~~~~~~~~~~~ valid.c:27650:16: warning: ‘CouldExtendPartial’ defined but not used [-Wunused-function] 27650 | static Boolean CouldExtendPartial (SeqLocPtr slp, Boolean partial5) | ^~~~~~~~~~~~~~~~~~ valid.c:20878:28: warning: ‘MultiGeneOverlapFree’ defined but not used [-Wunused-function] 20878 | static MultiGeneOverlapPtr MultiGeneOverlapFree (MultiGeneOverlapPtr m) | ^~~~~~~~~~~~~~~~~~~~ valid.c:20828:19: warning: ‘ListFeaturesContainedInLocation’ defined but not used [-Wunused-function] 20828 | static ValNodePtr ListFeaturesContainedInLocation (BioseqPtr bsp, SeqLocPtr slp, Uint1 seqfeatChoice, Uint1 featdefChoice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ valid.c:17541:16: warning: ‘IsEMBLAccn’ defined but not used [-Wunused-function] 17541 | static Boolean IsEMBLAccn (SeqEntryPtr sep, SeqLocPtr location) | ^~~~~~~~~~ valid.c:14642:16: warning: ‘CountryIsClosestToLatLon’ defined but not used [-Wunused-function] 14642 | static Boolean CountryIsClosestToLatLon ( | ^~~~~~~~~~~~~~~~~~~~~~~~ valid.c:14545:16: warning: ‘LatLonInRange’ defined but not used [-Wunused-function] 14545 | static Boolean LatLonInRange ( | ^~~~~~~~~~~~~ valid.c:13478:16: warning: ‘LatLonIsValid’ defined but not used [-Wunused-function] 13478 | static Boolean LatLonIsValid (CharPtr name) | ^~~~~~~~~~~~~ valid.c:10462:16: warning: ‘ConsistentWithC’ defined but not used [-Wunused-function] 10462 | static Boolean ConsistentWithC (Char ch) | ^~~~~~~~~~~~~~~ valid.c:6952:13: warning: ‘ReportLongSeqId’ defined but not used [-Wunused-function] 6952 | static void ReportLongSeqId (SeqIdPtr sip, ValidStructPtr vsp, Int4 max_len) | ^~~~~~~~~~~~~~~ valid.c:5932:13: warning: ‘CheckMutSetSources’ defined but not used [-Wunused-function] 5932 | static void CheckMutSetSources (BioSourcePtr biop, Pointer userdata) | ^~~~~~~~~~~~~~~~~~ valid.c:4360:13: warning: ‘FindLongIdsThatCollideWhenTruncated’ defined but not used [-Wunused-function] 4360 | static void FindLongIdsThatCollideWhenTruncated (SeqEntryPtr sep, ValidStructPtr vsp, Int4 trunc_len) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ valid.c:1511:16: warning: ‘IsNotUnclassifiedExcept’ defined but not used [-Wunused-function] 1511 | static Boolean IsNotUnclassifiedExcept (ValidStructPtr vsp) | ^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from valapi.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ valapi.c: In function ‘DoesStringMatchExpression’: valapi.c:263:15: warning: variable ‘errstr’ set but not used [-Wunused-but-set-variable] 263 | const char *errstr; | ^~~~~~ valapi.c: In function ‘DoesFieldValueMatchExpression’: valapi.c:292:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 292 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/alignmgr.h:261, from alignmgr.c:584: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ alignmgr.c: In function ‘AlnMgrIndexParentSA’: alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 1607 | sap->saip = (Pointer)AMAlignIndexFree(amaip); | ^ alignmgr.c: In function ‘AlnMgrGetNthBlockRange’: alignmgr.c:4182:21: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable] 4182 | AMAlignIndexPtr amaip; | ^~~~~ alignmgr.c: In function ‘AlnMgrMakeFakeMultipleEx’: alignmgr.c:5157:21: warning: variable ‘nogap’ set but not used [-Wunused-but-set-variable] 5157 | Boolean nogap; | ^~~~~ alignmgr.c: In function ‘AlnMgrMapBioseqToBioseq’: alignmgr.c:10840:19: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable] 10840 | Uint1 gap; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from alignmgr.c:584: alignmgr.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ alignmgr.c:10572:16: warning: ‘am_merge_after_edit’ defined but not used [-Wunused-function] 10572 | static Boolean am_merge_after_edit (SeqAlignPtr sap) | ^~~~~~~~~~~~~~~~~~~ alignmgr.c:6650:16: warning: ‘AlnMgrJaggedIndex’ defined but not used [-Wunused-function] 6650 | static Boolean AlnMgrJaggedIndex(SeqAlignPtr sap, AMmsmsPtr ams_head, AMmsmsPtr *ams_mhead, Int4 numrows) | ^~~~~~~~~~~~~~~~~ alignmgr.c:6123:18: warning: ‘AlnMgrConstructOverlaps’ defined but not used [-Wunused-function] 6123 | static AMmsmsPtr AlnMgrConstructOverlaps(AMmsmsPtr ams_head) | ^~~~~~~~~~~~~~~~~~~~~~~ alignmgr.c:5405:13: warning: ‘AlnMgrMergeNeighbors’ defined but not used [-Wunused-function] 5405 | static void AlnMgrMergeNeighbors(SeqAlignPtr salp) | ^~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function ‘AlnMgrUnpackSeqAlign’: alignmgr.c:1149:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1149 | sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function ‘am_print_seqalign_indexes’: alignmgr.c:2416:30: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2416 | for (j=0; j<(saip->ssdp[i]->numsect); j++) | ~~~~^~~~~~ alignmgr.c:2481:34: warning: ‘amaip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2481 | for (j=0; j<(amaip->amadp[i]->numseg); j++) | ~~~~~^~~~~~~ alignmgr.c: In function ‘AlnMgrGetNthSeqRangeInSA’: alignmgr.c:4115:19: warning: ‘tmp_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4115 | *stop = tmp_end; | ~~~~~~^~~~~~~~~ alignmgr.c:4113:20: warning: ‘tmp_beg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4113 | *start = tmp_beg; | ~~~~~~~^~~~~~~~~ alignmgr.c: In function ‘AlnMgrDeleteNthRow’: alignmgr.c:9809:31: warning: ‘abp_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9809 | abp_prev->next = abp; | ~~~~~~~~~~~~~~~^~~~~ alignmgr.c: In function ‘AlnMgrGetSubAlign’: alignmgr.c:9097:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9097 | salp = am_cleanupsalp(salp); | ^~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function ‘AlnMgrMakeMultByIntersectOnMaster’: alignmgr.c:5592:4: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5592 | SeqIdFree(sip_tmp); | ^~~~~~~~~~~~~~~~~~ alignmgr.c:5865:10: warning: ‘sip_head’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5865 | while (sip && !done) | ^ alignmgr.c:5845:18: note: ‘sip_head’ was declared here 5845 | SeqIdPtr sip_head; | ^~~~~~~~ alignmgr.c:5881:16: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5881 | while (sip_tmp != NULL && !here) | ^ alignmgr.c:5846:18: note: ‘sip_tmp’ was declared here 5846 | SeqIdPtr sip_tmp; | ^~~~~~~ alignmgr.c: In function ‘am_is_consistent’: alignmgr.c:10114:13: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10114 | AlnMgrGetNthUnalignedForNthRow(sap, n, i, &u_start, &u_stop); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliparse.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/aliparse.h:12, from aliparse.c:9: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ aliparse.c: In function ‘s_IsInterleaved’: aliparse.c:929:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 929 | (s_configInfo.useMaybes == FALSE) && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 930 | (seqLinePtr->maybe == FALSE)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c:823:20: warning: variable ‘isMaybe’ set but not used [-Wunused-but-set-variable] 823 | Boolean isMaybe; | ^~~~~~~ aliparse.c: In function ‘s_ProcessInterId’: aliparse.c:1000:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 1000 | ErrInfoPtr errPtr; | ^~~~~~ aliparse.c: In function ‘s_ProcessInterSeq’: aliparse.c:1090:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 1090 | ErrInfoPtr errPtr = NULL; | ^~~~~~ aliparse.c: In function ‘s_AnalyzeInterleaved’: aliparse.c:1193:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1193 | (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c: In function ‘s_ProcessContigId’: aliparse.c:1385:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 1385 | ErrInfoPtr errPtr; | ^~~~~~ aliparse.c: In function ‘s_ProcessContigSeq’: aliparse.c:1476:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 1476 | ErrInfoPtr errPtr; | ^~~~~~ aliparse.c: In function ‘s_AnalyzeContiguous’: aliparse.c:1603:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1603 | (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c: In function ‘s_CheckContext’: aliparse.c:2150:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2150 | (seqLinePtr->maybe == TRUE) && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 2151 | (s_configInfo.useMaybes == TRUE)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c:2131:20: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 2131 | ErrInfoPtr errPtr; | ^~~~~~ aliparse.c: In function ‘PrintOutMultAlign’: aliparse.c:3161:10: warning: statement with no effect [-Wunused-value] 3161 | for (d; dnext = newSeqPart; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/aliparse.h:12, from aliparse.c:9: ../include/ncbistr.h:337:19: warning: ‘currentIdStr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 337 | #define StringCmp Nlm_StringCmp | ^~~~~~~~~~~~~ aliparse.c:631:18: note: ‘currentIdStr’ was declared here 631 | CharPtr currentIdStr; | ^~~~~~~~~~~~ aliparse.c: In function ‘Ali_Read’: aliparse.c:1355:16: warning: ‘previousLength’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1355 | errPtr = Ali_AddError (&(fileInfoPtr->errors),ERR_SEQ_LENGTH_MISMATCH, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 | previousLength, | ~~~~~~~~~~~~~~~ 1357 | s_configInfo.declaredInfo.seqLength); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c:1154:20: note: ‘previousLength’ was declared here 1154 | Int4 previousLength; | ^~~~~~~~~~~~~~ aliparse.c:927:18: warning: ‘seqLinePtr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 927 | if (seqLinePtr->sequence != NULL) | ~~~~~~~~~~^~~~~~~~~~ aliparse.c:820:20: note: ‘seqLinePtr’ was declared here 820 | SeqLineInfoPtr seqLinePtr; | ^~~~~~~~~~ aliparse.c:748:3: warning: ‘cLineType’ may be used uninitialized in this function [-Wmaybe-uninitialized] 748 | fprintf(stderr,"%04d: SEQUENCE[%c] : %s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 | seqLinePtr->rowNum, | ~~~~~~~~~~~~~~~~~~~ 750 | cLineType, | ~~~~~~~~~~ 751 | seqLinePtr->sequence); | ~~~~~~~~~~~~~~~~~~~~~ aliparse.c:723:20: note: ‘cLineType’ was declared here 723 | Char cLineType; | ^~~~~~~~~ aliparse.c: In function ‘ALI_ConvertToNCBIData’: aliparse.c:3276:4: warning: ‘sep_new’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3276 | SeqAlignAddInSeqEntry (sep_head, sanp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliread.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from aliread.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/aliparse.h:15, from aliread.c:6: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignval.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from alignval.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ alignval.c: In function ‘ValidateSeqlengthInDenseSeg’: alignval.c:1267:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1267 | if(stptrtemp[j+i*aligndim]+lenptrtemp[i]>bslen) | ^ alignval.c: In function ‘PercentStringMatch’: alignval.c:1579:32: warning: variable ‘max_len’ set but not used [-Wunused-but-set-variable] 1579 | Int4 len1, len2, min_len, k, max_len; | ^~~~~~~ alignval.c: In function ‘CheckAlnSeqLens’: alignval.c:2004:12: warning: variable ‘aln_len’ set but not used [-Wunused-but-set-variable] 2004 | Int4 aln_len, start, stop; | ^~~~~~~ alignval.c: In function ‘ValidateSeqAlign’: alignval.c:2125:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable] 2125 | MsgAnswer ans; | ^~~ alignval.c: In function ‘GetAlignmentColumnPercentIdentities’: alignval.c:2511:14: warning: variable ‘num_match’ set but not used [-Wunused-but-set-variable] 2511 | Int4 num_match; | ^~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from alignval.c:57: alignval.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ alignval.c:2002:13: warning: ‘CheckAlnSeqLens’ defined but not used [-Wunused-function] 2002 | static void CheckAlnSeqLens (SeqAlignPtr salp) | ^~~~~~~~~~~~~~~ alignval.c:1560:16: warning: ‘IsSipContainedInStdseg’ defined but not used [-Wunused-function] 1560 | static Boolean IsSipContainedInStdseg(SeqIdPtr sip, StdSegPtr ssp) | ^~~~~~~~~~~~~~~~~~~~~~ alignval.c:602:13: warning: ‘delete_bioseqs’ defined but not used [-Wunused-function] 602 | static void delete_bioseqs (ValNodePtr ids, Uint2 entityID) | ^~~~~~~~~~~~~~ alignval.c: In function ‘ValMessage’: alignval.c:465:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=] 465 | sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence. Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from alignval.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignval.c:448:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=] 448 | sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence. Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from alignval.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sqnutil1.c: In function ‘GeneExtendFunc’: sqnutil1.c:2012:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 2012 | GeneRefPtr grp; | ^~~ sqnutil1.c: In function ‘ParseAnticodon’: sqnutil1.c:3494:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 3494 | Uint1 strand; | ^~~~~~ sqnutil1.c: In function ‘ParseCodeBreak’: sqnutil1.c:3617:17: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 3617 | Uint1 strand; | ^~~~~~ sqnutil1.c: In function ‘CleanUpPubdescAuthors’: sqnutil1.c:9093:20: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 9093 | ValNodePtr PNTR prev; | ^~~~ sqnutil1.c: In function ‘FixWrongFuzzOnPlusStrand’: sqnutil1.c:11948:15: warning: unused variable ‘spp’ [-Wunused-variable] 11948 | SeqPntPtr spp; | ^~~ sqnutil1.c: In function ‘FixWrongFuzzOnMinusStrand’: sqnutil1.c:12007:15: warning: unused variable ‘spp’ [-Wunused-variable] 12007 | SeqPntPtr spp; | ^~~ sqnutil1.c: In function ‘ConsolidateBioSourceNotes’: sqnutil1.c:13250:21: warning: variable ‘note_mod’ set but not used [-Wunused-but-set-variable] 13250 | OrgModPtr mod, note_mod; | ^~~~~~~~ sqnutil1.c:13249:21: warning: variable ‘note_ssp’ set but not used [-Wunused-but-set-variable] 13249 | SubSourcePtr ssp, note_ssp; | ^~~~~~~~ sqnutil1.c: In function ‘RemoveUnnecessaryGeneXrefs’: sqnutil1.c:15059:24: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 15059 | Int2 count; | ^~~~~ sqnutil1.c: In function ‘LinkTwoFeatures’: sqnutil1.c:17930:25: warning: variable ‘prev_xref’ set but not used [-Wunused-but-set-variable] 17930 | SeqFeatXrefPtr xref, prev_xref, next_xref; | ^~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sqnutil1.c:63: sqnutil1.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sqnutil1.c:10386:16: warning: ‘CleanUpSgml’ defined but not used [-Wunused-function] 10386 | static CharPtr CleanUpSgml ( | ^~~~~~~~~~~ sqnutil1.c:10272:13: warning: ‘SortGoTermsSfp’ defined but not used [-Wunused-function] 10272 | static void SortGoTermsSfp ( | ^~~~~~~~~~~~~~ sqnutil1.c:7405:16: warning: ‘IsStringSingleToken’ defined but not used [-Wunused-function] 7405 | static Boolean IsStringSingleToken (CharPtr str) | ^~~~~~~~~~~~~~~~~~~ sqnutil1.c:4942:13: warning: ‘CleanupConsSplice’ defined but not used [-Wunused-function] 4942 | static void CleanupConsSplice (GBQualPtr gbq) | ^~~~~~~~~~~~~~~~~ sqnutil1.c:2007:16: warning: ‘GeneExtendFunc’ defined but not used [-Wunused-function] 2007 | static Boolean GeneExtendFunc (GatherContextPtr gcp) | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sqnutil2.c: In function ‘FindResidueByName’: sqnutil2.c:5223:11: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 5223 | Uint1 last; | ^~~~ sqnutil2.c: In function ‘ReadFeatureTableEx’: sqnutil2.c:7254:18: warning: variable ‘isnote’ set but not used [-Wunused-but-set-variable] 7254 | Boolean isnote; | ^~~~~~ sqnutil2.c:7246:18: warning: variable ‘endsinspace’ set but not used [-Wunused-but-set-variable] 7246 | Boolean endsinspace; | ^~~~~~~~~~~ sqnutil2.c: In function ‘SeqEntryCopyReplace’: sqnutil2.c:9270:8: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 9270 | Uint1 type = 0; | ^~~~ sqnutil2.c: In function ‘StreamingReadBioseq’: sqnutil2.c:10095:10: warning: variable ‘level’ set but not used [-Wunused-but-set-variable] 10095 | Int2 level; | ^~~~~ sqnutil2.c: In function ‘StreamAsnForDescriptors’: sqnutil2.c:10328:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 10328 | while (rval = StreamingReadSeqEntry (aip, sp, &sr)) { | ^~~~ sqnutil2.c: In function ‘WriteAsnWithReplacedDescriptors’: sqnutil2.c:10749:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 10749 | while (rval = StreamingReadWriteSeqEntry(desc_stream_list, aip_in, aip_out, sp)) { | ^~~~ sqnutil2.c: In function ‘ReadFeatureTableFile’: sqnutil2.c:11700:18: warning: variable ‘begin’ set but not used [-Wunused-but-set-variable] 11700 | Int4 begin; | ^~~~~ sqnutil2.c: In function ‘ReadFastaOnly’: sqnutil2.c:11894:18: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable] 11894 | Char seqid [2048]; | ^~~~~ sqnutil2.c: In function ‘ReadDeltaFastaWithEmptyDefline’: sqnutil2.c:12446:29: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable] 12446 | Char line [4096], seqid [2048]; | ^~~~~ sqnutil2.c: In function ‘SortSeqGraphProc’: sqnutil2.c:13002:26: warning: self-comparison always evaluates to false [-Wtautological-compare] 13002 | } else if (gip2->right < gip2->right) { | ^ sqnutil2.c: In function ‘PrintQualityScoresToBuffer’: sqnutil2.c:13052:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 13052 | Uint2 entityID; | ^~~~~~~~ sqnutil2.c: In function ‘GetScoresbySeqId’: sqnutil2.c:13461:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 13461 | Uint2 entityID; | ^~~~~~~~ sqnutil2.c: In function ‘RemoveGapsFromDeltaLocation’: sqnutil2.c:15480:15: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 15480 | Uint1 strand; | ^~~~~~ sqnutil2.c: In function ‘IsStringInSpanInList’: sqnutil2.c:16693:11: warning: variable ‘str_val’ set but not used [-Wunused-but-set-variable] 16693 | Int4 str_val; | ^~~~~~~ sqnutil2.c:16691:27: warning: variable ‘suffix_len’ set but not used [-Wunused-but-set-variable] 16691 | Int4 prefix_len = 0, suffix_len; | ^~~~~~~~~~ sqnutil2.c: In function ‘CreateStructuredCommentsFromFile’: sqnutil2.c:18415:35: warning: variable ‘vnp_h’ set but not used [-Wunused-but-set-variable] 18415 | ValNodePtr table, header, line, vnp_h, vnp_l, tmp; | ^~~~~ sqnutil2.c: In function ‘AlignmentIntervalToString’: sqnutil2.c:18779:14: warning: variable ‘target_strand’ set but not used [-Wunused-but-set-variable] 18779 | Uint1 target_strand; | ^~~~~~~~~~~~~ sqnutil2.c:18778:14: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable] 18778 | Int4 seq_len; | ^~~~~~~ sqnutil2.c: In function ‘AdjustForConsensusSpliceCallback’: sqnutil2.c:20313:33: warning: variable ‘partial5_last’ set but not used [-Wunused-but-set-variable] 20313 | Boolean partial5, partial3, partial5_last, partial3_last, first = TRUE; | ^~~~~~~~~~~~~ sqnutil2.c: In function ‘RemoveGIProc’: sqnutil2.c:20926:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable] 20926 | SeqIdPtr nextid, sip; | ^~~~~~ sqnutil2.c: In function ‘RemoveBadCodonRecognizedCallback’: sqnutil2.c:22812:13: warning: variable ‘rcodon’ set but not used [-Wunused-but-set-variable] 22812 | Uint1 rcodon [4]; | ^~~~~~ sqnutil2.c: In function ‘CompareStructuredComment’: sqnutil2.c:25151:23: warning: variable ‘ovp2’ set but not used [-Wunused-but-set-variable] 25151 | ObjValNodePtr ovp1, ovp2; | ^~~~ sqnutil2.c:25151:17: warning: variable ‘ovp1’ set but not used [-Wunused-but-set-variable] 25151 | ObjValNodePtr ovp1, ovp2; | ^~~~ sqnutil2.c: In function ‘UniqueAndCountValNodeCS’: sqnutil2.c:25546:17: warning: variable ‘curr’ set but not used [-Wunused-but-set-variable] 25546 | ValNodePtr curr; | ^~~~ sqnutil2.c: In function ‘PerformArticleQuery’: sqnutil2.c:25810:20: warning: variable ‘debug_mode’ set but not used [-Wunused-but-set-variable] 25810 | Boolean debug_mode = FALSE; | ^~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sqnutil2.c:58: sqnutil2.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sqnutil2.c:18065:19: warning: ‘AuthAffilListFree’ defined but not used [-Wunused-function] 18065 | static ValNodePtr AuthAffilListFree (ValNodePtr list) | ^~~~~~~~~~~~~~~~~ sqnutil2.c:18044:21: warning: ‘AuthAffilNew’ defined but not used [-Wunused-function] 18044 | static AuthAffilPtr AuthAffilNew (CharPtr affil) | ^~~~~~~~~~~~ sqnutil2.c:16282:19: warning: ‘MakeTranscriptomeIDTokensFromLine’ defined but not used [-Wunused-function] 16282 | static ValNodePtr MakeTranscriptomeIDTokensFromLine (CharPtr line) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c:16188:13: warning: ‘RevCompFeatsOnBioseq’ defined but not used [-Wunused-function] 16188 | static void RevCompFeatsOnBioseq (BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~~~~ sqnutil2.c:8333:16: warning: ‘DoesSeqEntryAccessionMatchList’ defined but not used [-Wunused-function] 8333 | static Boolean DoesSeqEntryAccessionMatchList (SeqEntryPtr sep, ValNodePtr accn_list) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c:4684:16: warning: ‘IsNonSeqChar’ defined but not used [-Wunused-function] 4684 | static Boolean IsNonSeqChar (Char ch, Boolean is_prot) | ^~~~~~~~~~~~ sqnutil2.c: In function ‘ReplaceLocalID’: sqnutil2.c:23605:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 5 and 68 [-Wformat-overflow=] 23605 | sprintf (tmp, "%s__%d", str, (int) count); | ^~ sqnutil2.c:23605:17: note: directive argument in the range [-32768, 32767] 23605 | sprintf (tmp, "%s__%d", str, (int) count); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 72 bytes into a destination of size 70 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c: In function ‘AdjustSeqEntryForConsensusSpliceBioseqCallback’: sqnutil2.c:20313:48: warning: ‘partial3_last’ may be used uninitialized in this function [-Wmaybe-uninitialized] 20313 | Boolean partial5, partial3, partial5_last, partial3_last, first = TRUE; | ^~~~~~~~~~~~~ sqnutil2.c: In function ‘PrintQualityScoresToBuffer’: sqnutil2.c:13110:54: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 5 and 56 [-Wformat-overflow=] 13110 | sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title, | ^~~ sqnutil2.c:13110:17: note: directive argument in the range [-2147483647, 2147483647] 13110 | sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 32 or more bytes (assuming 93) into a destination of size 84 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil3.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sqnutil3.c: In function ‘BspLinkCDSmRNAbyOverlap’: sqnutil3.c:528:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 528 | Int2 count; | ^~~~~ sqnutil3.c: In function ‘CautiousSeqEntryCleanup’: sqnutil3.c:2178:16: warning: variable ‘taxserver’ set but not used [-Wunused-but-set-variable] 2178 | Boolean taxserver; | ^~~~~~~~~ sqnutil3.c: In function ‘AddGapSeqLit’: sqnutil3.c:3127:19: warning: unused variable ‘gap_chars’ [-Wunused-variable] 3127 | CharPtr gap_chars = "NNNNNNNNNN" | ^~~~~~~~~ sqnutil3.c: In function ‘ConvertSegSetsToDeltaSequencesInt’: sqnutil3.c:3382:26: warning: variable ‘prev_sep’ set but not used [-Wunused-but-set-variable] 3382 | SeqEntryPtr sub_sep, prev_sep, next_sep; | ^~~~~~~~ sqnutil3.c: In function ‘MakeSequinDataFromAlignmentEx’: sqnutil3.c:4797:32: warning: variable ‘num_sets’ set but not used [-Wunused-but-set-variable] 4797 | Int4 index, curr_seg, num_sets; | ^~~~~~~~ sqnutil3.c:4791:26: warning: variable ‘salp_last’ set but not used [-Wunused-but-set-variable] 4791 | SeqAlignPtr salp_list, salp_last; | ^~~~~~~~~ sqnutil3.c:4791:15: warning: variable ‘salp_list’ set but not used [-Wunused-but-set-variable] 4791 | SeqAlignPtr salp_list, salp_last; | ^~~~~~~~~ sqnutil3.c: In function ‘ConvertContainedCDSToMiscFeat’: sqnutil3.c:12824:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 12824 | Uint1 strand; | ^~~~~~ sqnutil3.c: In function ‘OrgNameMatchExceptOldName’: sqnutil3.c:13713:28: warning: self-comparison always evaluates to false [-Wtautological-compare] 13713 | || onp2->mgcode != onp2->mgcode | ^~ sqnutil3.c: In function ‘FindMismatchedCitSubAffiliations’: sqnutil3.c:19281:14: warning: variable ‘has_seq_submit’ set but not used [-Wunused-but-set-variable] 19281 | Boolean has_seq_submit = TRUE; | ^~~~~~~~~~~~~~ sqnutil3.c: In function ‘GetCDSformRNA’: sqnutil3.c:20267:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 20267 | Int2 count; | ^~~~~ sqnutil3.c: In function ‘FindTextInFlatfileOncaller’: sqnutil3.c:22140:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable] 22140 | Boolean okay; | ^~~~ sqnutil3.c: In function ‘CheckForTitleAuthorConflicts’: sqnutil3.c:23168:14: warning: variable ‘author_conflict’ set but not used [-Wunused-but-set-variable] 23168 | Boolean author_conflict = FALSE; | ^~~~~~~~~~~~~~~ sqnutil3.c: In function ‘SortVnpByBspProjectId’: sqnutil3.c:26956:31: warning: the comparison will always evaluate as ‘true’ for the address of ‘vnp2’ will never be NULL [-Waddress] 26956 | if (vnp1 != NULL &&& vnp2 != NULL) { | ^~ sqnutil3.c: In function ‘GetDiscrepancyItemTextEx’: sqnutil3.c:31033:21: warning: variable ‘special_flag’ set but not used [-Wunused-but-set-variable] 31033 | Boolean special_flag = FALSE; | ^~~~~~~~~~~~ sqnutil3.c: In function ‘CollectionDateIsInTheFuture’: sqnutil3.c:34586:20: warning: variable ‘time’ set but not used [-Wunused-but-set-variable] 34586 | CharPtr str, time; | ^~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sqnutil3.c:62: sqnutil3.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sqnutil3.c: In function ‘FillInMissingTraces’: sqnutil3.c:35189:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 35189 | system (cmmd); | ^~~~~~~~~~~~~ At top level: sqnutil3.c:36777:13: warning: ‘TestLatLonFormatting’ defined but not used [-Wunused-function] 36777 | static void TestLatLonFormatting (FILE *fp) | ^~~~~~~~~~~~~~~~~~~~ sqnutil3.c:34406:22: warning: ‘BetterDateFree’ defined but not used [-Wunused-function] 34406 | static BetterDatePtr BetterDateFree (BetterDatePtr dp) | ^~~~~~~~~~~~~~ sqnutil3.c:33998:16: warning: ‘GetColon’ defined but not used [-Wunused-function] 33998 | static CharPtr GetColon (CharPtr str) | ^~~~~~~~ sqnutil3.c:17224:24: warning: ‘IntervalPairFree’ defined but not used [-Wunused-function] 17224 | static IntervalPairPtr IntervalPairFree (IntervalPairPtr i) | ^~~~~~~~~~~~~~~~ sqnutil3.c:10883:16: warning: ‘IsMitochondrionBioseq’ defined but not used [-Wunused-function] 10883 | static Boolean IsMitochondrionBioseq(BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~~~~~ sqnutil3.c: In function ‘LinkCDSmRNAbyLabelAndLocationCallback’: sqnutil3.c:876:23: warning: ‘best_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 876 | } else if (diff < best_diff) { | ^ sqnutil3.c: In function ‘tRNASameStrandBioseqCallback’: sqnutil3.c:16769:8: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16769 | if (strand == Seq_strand_minus) { | ^ sqnutil3.c: In function ‘CheckForDivConflicts’: sqnutil3.c:8132:15: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8132 | else ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQFEAT, sfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c:8131:13: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8131 | ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQDESC, sdp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c: In function ‘FindMismatchedComments’: sqnutil3.c:26612:47: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 26612 | sprintf (fmt, sub_fmt, (CharPtr) sdp->data.ptrvalue); | ~~~~~~~~~^~~~~~~~~ sqnutil3.c: In function ‘FillInMissingTraces’: sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=] 35188 | sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out); | ^~ ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil3.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=] 35188 | sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out); | ^~ ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil3.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil4.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sqnutil4.c: In function ‘ListClauses’: sqnutil4.c:8566:43: warning: variable ‘twobefore’ set but not used [-Wunused-but-set-variable] 8566 | FeatureClausePtr thisclause, onebefore, twobefore, oneafter, twoafter; | ^~~~~~~~~ sqnutil4.c: In function ‘SmashOneTallClause’: sqnutil4.c:9900:20: warning: variable ‘subclause_featlist’ set but not used [-Wunused-but-set-variable] 9900 | ValNodePtr subclause_featlist; | ^~~~~~~~~~~~~~~~~~ sqnutil4.c: In function ‘GetFeatureClauseForSeg’: sqnutil4.c:10787:21: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 10787 | Int4 start, stop; | ^~~~~ sqnutil4.c: In function ‘RemoveAutodefObjectsForDesc’: sqnutil4.c:13618:18: warning: unused variable ‘bssp’ [-Wunused-variable] 13618 | BioseqSetPtr bssp; | ^~~~ sqnutil4.c:13617:15: warning: unused variable ‘bsp’ [-Wunused-variable] 13617 | BioseqPtr bsp; | ^~~ sqnutil4.c: In function ‘ConvertProtToImpFunc’: sqnutil4.c:15072:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 15072 | Uint2 entityID; | ^~~~~~~~ sqnutil4.c: In function ‘ExtraCDSCreationActions’: sqnutil4.c:15989:28: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable] 15989 | SeqEntryPtr psep, nsep; | ^~~~ sqnutil4.c: In function ‘TESTDisplayQualCombo’: sqnutil4.c:17099:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 17099 | Int4 val; | ^~~ sqnutil4.c: In function ‘ConvertCDSToMatPeptideForOverlappingCDS’: sqnutil4.c:18589:15: warning: variable ‘crp’ set but not used [-Wunused-but-set-variable] 18589 | CdRegionPtr crp; | ^~~ sqnutil4.c: In function ‘AddNewUniqueAnnotations’: sqnutil4.c:18780:39: warning: variable ‘sap_tmp_next’ set but not used [-Wunused-but-set-variable] 18780 | SeqAnnotPtr sap, sap_next, sap_tmp, sap_tmp_next, sap_copy, last_sap; | ^~~~~~~~~~~~ sqnutil4.c: In function ‘AssignBioseqToLineageGroup’: sqnutil4.c:19443:27: warning: variable ‘vnp_last’ set but not used [-Wunused-but-set-variable] 19443 | ValNodePtr list, vnp, vnp_last = NULL; | ^~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from sqnutil4.c:58: sqnutil4.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/tax3api.h:51, from sqnutil4.c:64: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ sqnutil4.c:17248:13: warning: ‘TESTDisplayList’ defined but not used [-Wunused-function] 17248 | static void TESTDisplayList (ValNodePtr new_list) | ^~~~~~~~~~~~~~~ sqnutil4.c:17219:19: warning: ‘ExpandOneComboListUsingAllPresentQuals’ defined but not used [-Wunused-function] 17219 | static ValNodePtr ExpandOneComboListUsingAllPresentQuals (QualComboPtr q) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil4.c:16930:16: warning: ‘RemoveFieldFromUniqBioSrcGrpList’ defined but not used [-Wunused-function] 16930 | static Boolean RemoveFieldFromUniqBioSrcGrpList (ValNodePtr list, FieldTypePtr field) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil4.c:10029:19: warning: ‘RemoveAllButLastCDS’ defined but not used [-Wunused-function] 10029 | static ValNodePtr RemoveAllButLastCDS ( | ^~~~~~~~~~~~~~~~~~~ sqnutil4.c:9998:13: warning: ‘SmashTallClauses’ defined but not used [-Wunused-function] 9998 | static void SmashTallClauses ( | ^~~~~~~~~~~~~~~~ sqnutil4.c:9834:13: warning: ‘RemoveFeats’ defined but not used [-Wunused-function] 9834 | static void RemoveFeats ( | ^~~~~~~~~~~ sqnutil4.c:5211:13: warning: ‘CountFeatures’ defined but not used [-Wunused-function] 5211 | static Int4 CountFeatures ( | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF subutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from subutil.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ subutil.c: In function ‘AddSeqLitToBioseq’: subutil.c:769:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 769 | ValNodePtr vnp; | ^~~ subutil.c: In function ‘AddReferenceToSegmentedEntry’: subutil.c:1163:22: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 1163 | SeqEntryPtr tmp, prev; | ^~~~ subutil.c: In function ‘GetDNAConv’: subutil.c:1624:16: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1624 | dnaconv[*ptr] = *ptr; | ^~~~ subutil.c: In function ‘GetProteinConv’: subutil.c:1646:17: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1646 | protconv[*ptr] = *ptr; | ^~~~ subutil.c: In function ‘AddBasesToByteStore’: subutil.c:1669:26: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1669 | residue = dnaconv[ch]; | ^ subutil.c: In function ‘AddAAsToByteStore’: subutil.c:1700:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1700 | residue = aaconv[ch]; | ^ subutil.c: In function ‘CitArtBuild’: subutil.c:2683:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 2683 | ValNodePtr vnp, tmp; | ^~~ subutil.c: In function ‘MakeRNAFeature’: subutil.c:3639:29: warning: comparison between pointer and zero character constant [-Wpointer-compare] 3639 | if (AA_for_tRNA != '\0') | ^~ subutil.c:3639:17: note: did you mean to dereference the pointer? 3639 | if (AA_for_tRNA != '\0') | ^ At top level: subutil.c:3546:20: warning: ‘TranslateCdRegionNew’ defined but not used [-Wunused-function] 3546 | static SeqEntryPtr TranslateCdRegionNew ( | ^~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF edutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/edutil.h:188, from edutil.c:365: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ edutil.c: In function ‘SeqLocsToDeltaSeqs’: edutil.c:795:14: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable] 795 | SeqIdPtr sip; | ^~~ edutil.c: In function ‘SeqLocCopyPart’: edutil.c:2243:13: warning: variable ‘done’ set but not used [-Wunused-but-set-variable] 2243 | Boolean done, started, wasa_null, hada_null; | ^~~~ edutil.c: In function ‘IndexedSeqFeatsCopy’: edutil.c:2400:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable] 2400 | ValNodePtr region; | ^~~~~~ edutil.c: In function ‘SeqFeatsCopy’: edutil.c:2504:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable] 2504 | ValNodePtr region; | ^~~~~~ edutil.c: In function ‘SeqLocInsert’: edutil.c:3686:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable] 3686 | Int4 diff, numpnt, i, tpos; | ^~~~ edutil.c: In function ‘SeqEdRecreateDeletedFeats’: edutil.c:4212:19: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable] 4212 | SeqFeatPtr sfp; | ^~~ edutil.c: In function ‘SeqEdSeqLocInsert’: edutil.c:4512:8: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable] 4512 | Int4 diff, numpnt, i, tpos; | ^~~~ edutil.c: In function ‘SeqEdSeqLocDelete’: edutil.c:5069:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable] 5069 | Int4 diff; | ^~~~ edutil.c: In function ‘SeqEdInsertAdjustFeat’: edutil.c:5300:7: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 5300 | && sfp->data.choice == SEQFEAT_CDREGION) edutil.c: In function ‘SeqEdDeleteFromBsp’: edutil.c:6485:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 6485 | && sfp->data.choice == SEQFEAT_CDREGION) edutil.c:6548:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 6548 | && sfp->data.choice == SEQFEAT_CDREGION) edutil.c:6437:21: warning: variable ‘merge_mode’ set but not used [-Wunused-but-set-variable] 6437 | Boolean merge_mode; | ^~~~~~~~~~ edutil.c:6428:21: warning: variable ‘feats_altered’ set but not used [-Wunused-but-set-variable] 6428 | Boolean feats_altered = FALSE; | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from asn2ff1.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff1.c: In function ‘asn2ff_print’: asn2ff1.c:289:17: warning: unused variable ‘dsp’ [-Wunused-variable] 289 | DescrStructPtr dsp = NULL; | ^~~ asn2ff1.c: In function ‘Asn2ffJobCreate’: asn2ff1.c:351:18: warning: unused variable ‘itemID’ [-Wunused-variable] 351 | Uint4 itemID = 0; | ^~~~~~ asn2ff1.c: In function ‘SeqEntryToEntrez’: asn2ff1.c:498:15: warning: unused variable ‘slp’ [-Wunused-variable] 498 | SeqLocPtr slp = NULL; | ^~~ asn2ff1.c: In function ‘SeqLocToFlat’: asn2ff1.c:1518:19: warning: unused variable ‘itemID’ [-Wunused-variable] 1518 | Uint4 itemID=0; | ^~~~~~ asn2ff1.c: In function ‘asn2ff_setup’: asn2ff1.c:1579:12: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable] 1579 | BioseqPtr bsp; | ^~~ asn2ff1.c: In function ‘PrintStatusLine’: asn2ff1.c:2197:15: warning: unused variable ‘ptr’ [-Wunused-variable] 2197 | CharPtr u, ptr=NULL; | ^~~ asn2ff1.c: In function ‘asn2gb_setup’: asn2ff1.c:2403:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2403 | if (ajp->genome_view && gbp->map == FALSE || ajp->contig_view) { At top level: asn2ff1.c:2189:13: warning: ‘PrintStatusLine’ defined but not used [-Wunused-function] 2189 | static void PrintStatusLine(Asn2ffJobPtr ajp, GBEntryPtr gbp) | ^~~~~~~~~~~~~~~ asn2ff1.c:2171:16: warning: ‘find_user_object’ defined but not used [-Wunused-function] 2171 | static Boolean find_user_object(BioseqPtr bsp) | ^~~~~~~~~~~~~~~~ asn2ff1.c:816:19: warning: ‘SeqEntryToLinkStrEx’ defined but not used [-Wunused-function] 816 | static LinkStrPtr SeqEntryToLinkStrEx(Asn2ffJobPtr ajp, SeqEntryPtr sep, LinkStrPtr lsp, Uint1 format) | ^~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff1.c:45: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff1.c: In function ‘print_taxinfo’: asn2ff1.c:4356:19: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 4356 | sprintf(tmp, "%d", gcode); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from asn2ff1.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff1.c: In function ‘asn2embl_setup’: asn2ff1.c:2754:7: warning: ‘max’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2754 | if (max == index+1) { | ^ asn2ff1.c: In function ‘asn2gp_setup’: asn2ff1.c:2942:4: warning: ‘feat_num’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2942 | for (index=0; index < feat_num; index++) { | ^~~ asn2ff1.c: In function ‘SeqEntryToGBFlatNoSeq’: asn2ff1.c:1292:15: warning: ‘rsult’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1292 | Boolean rsult; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from asn2ff2.c:216: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff2.c: In function ‘GetStrForBankit’: asn2ff2.c:518:9: warning: unused variable ‘i’ [-Wunused-variable] 518 | Int2 i=0, ptrlen = 0; | ^ asn2ff2.c: In function ‘GetCommentByChoice’: asn2ff2.c:769:34: warning: unused variable ‘string’ [-Wunused-variable] 769 | CharPtr buf = NULL, ptr = NULL, string=NULL, new_string=NULL, str=NULL; | ^~~~~~ asn2ff2.c: In function ‘GP_GetSeqDescrComms’: asn2ff2.c:1163:10: warning: unused variable ‘got_comment’ [-Wunused-variable] 1163 | Boolean got_comment=FALSE; | ^~~~~~~~~~~ asn2ff2.c: At top level: asn2ff2.c:1358:8: warning: return type defaults to ‘int’ [-Wimplicit-int] 1358 | static ChoicePID(SeqIdPtr sid) | ^~~~~~~~~ asn2ff2.c: In function ‘GetGibbsqCommentLength’: asn2ff2.c:1600:7: warning: unused variable ‘gibbsq’ [-Wunused-variable] 1600 | Int4 gibbsq=0, total; | ^~~~~~ asn2ff2.c: In function ‘GatherDescrByChoice’: asn2ff2.c:1864:8: warning: variable ‘bspID’ set but not used [-Wunused-but-set-variable] 1864 | Uint2 bspID; | ^~~~~ At top level: asn2ff2.c:1190:16: warning: ‘GetSPBlock’ defined but not used [-Wunused-function] 1190 | static CharPtr GetSPBlock (Asn2ffJobPtr ajp, GBEntryPtr gbp) | ^~~~~~~~~~ asn2ff2.c:680:16: warning: ‘GetEvidence’ defined but not used [-Wunused-function] 680 | static CharPtr GetEvidence(Asn2ffJobPtr ajp, GBEntryPtr gbp) | ^~~~~~~~~~~ asn2ff2.c:232:16: warning: ‘has_comment’ defined but not used [-Wunused-variable] 232 | static Boolean has_comment; | ^~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff2.c:218: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff2.c: In function ‘GetCommentByChoice’: asn2ff2.c:829:8: warning: ‘is_other’ may be used uninitialized in this function [-Wmaybe-uninitialized] 829 | if (is_other == TRUE && mfp->completeness) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff3.c: In function ‘PutGeneFirst’: asn2ff3.c:1073:26: warning: unused variable ‘qual_temp’ [-Wunused-variable] 1073 | GBQualPtr gbqual, qual, qual_temp=NULL, qual_gene=NULL; | ^~~~~~~~~ asn2ff3.c:1072:10: warning: unused variable ‘still_looking’ [-Wunused-variable] 1072 | Boolean still_looking=TRUE; | ^~~~~~~~~~~~~ asn2ff3.c: In function ‘mRNAEvidenceComment’: asn2ff3.c:1157:9: warning: unused variable ‘Locus_id’ [-Wunused-variable] 1157 | Int4 Locus_id = 0; | ^~~~~~~~ asn2ff3.c: In function ‘Add_gene_id’: asn2ff3.c:2717:24: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘Nlm_VoidPtr’ {aka ‘void *’} [-Wformat=] 2717 | sprintf(val, "GeneID:%s", vnp->data.ptrvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | char * Nlm_VoidPtr {aka void *} | %p asn2ff3.c: In function ‘Add_trid’: asn2ff3.c:3142:20: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3142 | sprintf(buf, "%ld", sip->data.intvalue); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long int Nlm_Int8 {aka long long int} | %lld asn2ff3.c:3123:9: warning: unused variable ‘gi’ [-Wunused-variable] 3123 | BIG_ID gi = -1; | ^~ asn2ff3.c: In function ‘AddPID’: asn2ff3.c:3185:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3185 | sprintf(buf, "%ld", sip->data.intvalue); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long int Nlm_Int8 {aka long long int} | %lld At top level: asn2ff3.c:2702:13: warning: ‘Add_gene_id’ defined but not used [-Wunused-function] 2702 | static void Add_gene_id (GeneStructPtr gsp, SeqFeatPtr sfp_out) | ^~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff3.c:39: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: asn2ff3.c: In function ‘Add_dbxref’: ../include/ncbimem.h:232:23: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ asn2ff3.c:216:10: note: ‘val’ was declared here 216 | CharPtr val; | ^~~ asn2ff3.c: In function ‘GettRNAaa’: asn2ff3.c:1619:11: warning: ‘seq_code’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1619 | ptr = Get3LetterSymbol(seq_code, table, trna->aa, error_msgs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: asn2ff3.c: In function ‘mRNAEvidenceComment’: ../include/ncbistr.h:331:19: warning: ‘ne_name’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ asn2ff3.c:1153:32: note: ‘ne_name’ was declared here 1153 | CharPtr method = NULL, ptr, ne_name; | ^~~~~~~ asn2ff3.c: In function ‘ConvertToNAImpFeat’: asn2ff3.c:2254:23: warning: ‘%ld’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=] 2254 | sprintf(buf_ptr, "%ld", (long) (cdr->frame)); | ^~~ asn2ff3.c:2254:22: note: directive argument in the range [1, 255] 2254 | sprintf(buf_ptr, "%ld", (long) (cdr->frame)); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff4.c:273: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff4.c: In function ‘FlatLocPoint’: asn2ff4.c:437:15: warning: variable ‘order’ set but not used [-Wunused-but-set-variable] 437 | static Uint1 order[NUM_SEQID]; | ^~~~~ asn2ff4.c: In function ‘do_FlatLoc’: asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1122 | if ( ! FlatVirtLoc( bsp, slp)) | ^ asn2ff4.c: At top level: asn2ff4.c:1347:8: warning: return type defaults to ‘int’ [-Wimplicit-int] 1347 | static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2) | ^~~~~~~~~~ asn2ff4.c: In function ‘CreateImpFeatFromProt’: asn2ff4.c:1659:14: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 1659 | GeneRefPtr grp; | ^~~ asn2ff4.c: In function ‘MatchNAGeneToFeat’: asn2ff4.c:2196:17: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable] 2196 | NoteStructPtr nsp; /* UNUSED */ | ^~~ asn2ff4.c: In function ‘MatchAAGeneToFeat’: asn2ff4.c:2367:18: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable] 2367 | NoteStructPtr nsp; /* UNUSED */ | ^~~ asn2ff4.c: In function ‘SortOrganizeFeat’: asn2ff4.c:2457:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2457 | if (ofp == NULL) | ^~ asn2ff4.c:2459:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2459 | if (ofp->sfpListsize > 0 && ofp->sortListsize < ofp->sfpListsize) { | ^~ asn2ff4.c: In function ‘OrganizeSeqFeat’: asn2ff4.c:2578:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2578 | if (ajp->ignore_top) | ^~ asn2ff4.c:2580:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2580 | gsc.seglevels = 1; | ^~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff4.c:273: At top level: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff4.c: In function ‘CheckNewSfpLoc’: asn2ff4.c:1767:7: warning: ‘slp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1767 | if (SeqLocLen(slp) <= BioseqGetLen(bsp)) { | ^~~~~~~~~~~~~~ asn2ff4.c: In function ‘CreateImpFeatFromProt’: asn2ff4.c:1723:18: warning: ‘%d’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=] 1723 | sprintf(buf, "%d", cdr->frame); | ^~ asn2ff4.c:1723:17: note: directive argument in the range [1, 255] 1723 | sprintf(buf, "%d", cdr->frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff4.c:273: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff5.c: In function ‘format_cit_sub’: asn2ff5.c:1023:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1023 | format == EMBLPEPT_FMT && afp->choice == 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ asn2ff5.c:926:41: warning: variable ‘need_space’ set but not used [-Wunused-but-set-variable] 926 | Boolean need_comma = FALSE, /*UNUSED*/need_space = TRUE; | ^~~~~~~~~~ asn2ff5.c: In function ‘format_thesis’: asn2ff5.c:1213:20: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable] 1213 | Boolean /*UNUSED*/embl_format = FALSE; | ^~~~~~~~~~~ asn2ff5.c: In function ‘format_book’: asn2ff5.c:1296:10: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable] 1296 | Boolean embl_format = FALSE; | ^~~~~~~~~~~ asn2ff5.c: In function ‘format_jourarticle’: asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1680 | if (ip->pages != NULL) | ^ asn2ff5.c: In function ‘StripParanthesis’: asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value] 2124 | temp++; *ptr_in++; | ^~~~~~~~~ asn2ff5.c: In function ‘PostARefErrMessage’: asn2ff5.c:3005:20: warning: variable ‘ignore_this’ set but not used [-Wunused-but-set-variable] 3005 | Boolean /*UNUSED*/ignore_this, submit=FALSE, error; | ^~~~~~~~~~~ asn2ff5.c: At top level: asn2ff5.c:188:26: warning: ‘GetSubmitterName’ declared ‘static’ but never defined [-Wunused-function] 188 | static CharPtr /*UNUSED*/GetSubmitterName PROTO ((Uint1 format, ValNodePtr pub)); | ^~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff5.c:177: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff5.c: In function ‘CheckPubs’: asn2ff5.c:2772:5: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2772 | PostARefErrMessage (ajp, bsp, psp, NULL, status, NULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff5.c: In function ‘FlatJournal’: asn2ff5.c:1121:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 1121 | sprintf(buf,"%s%ld ", " ", (long) pat_seqid); | ^~~ asn2ff5.c:1121:16: note: directive argument in the range [1, 2147483647] 1121 | sprintf(buf,"%s%ld ", " ", (long) pat_seqid); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff5.c:1115:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 1115 | sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); | ^~~ asn2ff5.c:1115:16: note: directive argument in the range [1, 2147483647] 1115 | sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); | ^~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff5.c:1140:24: warning: ‘afp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1140 | if (ap == NULL || afp == NULL) { | ^ asn2ff5.c:1051:11: note: ‘afp’ was declared here 1051 | AffilPtr afp; | ^~~ In file included from ../include/ncbi.h:62, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: ../include/ncbistr.h:349:20: warning: ‘temp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 349 | #define StringMove Nlm_StringMove | ^~~~~~~~~~~~~~ asn2ff5.c:1946:23: note: ‘temp’ was declared here 1946 | CharPtr affil=NULL, temp, dup_pages=NULL, retval=NULL; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff6.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff6.c: In function ‘AddGBQual’: asn2ff6.c:1327:18: warning: variable ‘note’ set but not used [-Wunused-but-set-variable] 1327 | GBQualPtr curq, note = NULL; | ^~~~ asn2ff6.c: In function ‘FlatOrganelle’: asn2ff6.c:1483:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1483 | if (! retval ) | ^~ asn2ff6.c:1486:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1486 | break; | ^~~~~ asn2ff6.c: In function ‘BioseqGetGBDivCodeEx’: asn2ff6.c:1700:23: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable] 1700 | Int2 tech, /*UNUSED*/diff, retval = 0; | ^~~~ asn2ff6.c: In function ‘GR_PrintPubs’: asn2ff6.c:2297:41: warning: unused variable ‘stop’ [-Wunused-variable] 2297 | Int4 muid, pmid, pat_seqid=0, start=0, stop=0; | ^~~~ asn2ff6.c:2297:32: warning: unused variable ‘start’ [-Wunused-variable] 2297 | Int4 muid, pmid, pat_seqid=0, start=0, stop=0; | ^~~~~ asn2ff6.c:2297:13: warning: variable ‘pmid’ set but not used [-Wunused-but-set-variable] 2297 | Int4 muid, pmid, pat_seqid=0, start=0, stop=0; | ^~~~ asn2ff6.c:2296:10: warning: unused variable ‘descr’ [-Wunused-variable] 2296 | CharPtr descr = NULL; | ^~~~~ asn2ff6.c: In function ‘ValidateLocus’: asn2ff6.c:2786:17: warning: variable ‘base_locus_max’ set but not used [-Wunused-but-set-variable] 2786 | Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits; | ^~~~~~~~~~~~~~ asn2ff6.c: In function ‘ValidateOtherAccession’: asn2ff6.c:2886:29: warning: unused variable ‘FiveNum’ [-Wunused-variable] 2886 | Boolean FirstLetter=FALSE, FiveNum = FALSE; | ^~~~~~~ asn2ff6.c:2886:10: warning: unused variable ‘FirstLetter’ [-Wunused-variable] 2886 | Boolean FirstLetter=FALSE, FiveNum = FALSE; | ^~~~~~~~~~~ asn2ff6.c: In function ‘AddExtraAccessions’: asn2ff6.c:3498:20: warning: variable ‘ncbi’ set but not used [-Wunused-but-set-variable] 3498 | Boolean /*UNUSED*/ncbi = FALSE; | ^~~~ At top level: asn2ff6.c:2883:13: warning: ‘ValidateOtherAccession’ defined but not used [-Wunused-function] 2883 | static Int2 ValidateOtherAccession(CharPtr new_buf, CharPtr orig_buf) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from asn2ff6.c:347: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff6.c: In function ‘ValidateLocus’: asn2ff6.c:2866:33: warning: ‘exp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2866 | sprintf(buf_ext+num_of_digits-exp, "%ld", (long) num_seg); | ^ asn2ff6.c: In function ‘MakeBaseLocusAwp’: asn2ff6.c:3093:38: warning: ‘num_of_digits’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3093 | base_locus_max = MAX_LOCUS_NAME_LEN - num_of_digits; asn2ff6.c: In function ‘GetLocusPartsAwp’: asn2ff6.c:3449:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3449 | sprintf(gbp->locus, "%-16s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3447:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3447 | sprintf(gbp->locus, "%-10s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3372:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3372 | sprintf(gbp->locus, "%-16s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3370:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3370 | sprintf(gbp->locus, "%-10s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3313:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3313 | sprintf(gbp->locus, "%-16s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3311:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3311 | sprintf(gbp->locus, "%-10s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3270:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3270 | sprintf(gbp->locus, "%-16s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3268:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3268 | sprintf(gbp->locus, "%-10s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb1.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb1.c: In function ‘IsWholeWordSubstr’: asn2gnb1.c:2202:19: warning: variable ‘right’ set but not used [-Wunused-but-set-variable] 2202 | Boolean left, right; | ^~~~~ asn2gnb1.c: In function ‘s_LocusGetBaseName’: asn2gnb1.c:2350:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 2350 | else | ^~~~ asn2gnb1.c:2352:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 2352 | newLength = segNameLen - deleteChars; | ^~~~~~~~~ asn2gnb1.c: In function ‘DoOneSection’: asn2gnb1.c:2522:24: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable] 2522 | IntAsn2gbSectPtr iasp; | ^~~~ asn2gnb1.c:2514:24: warning: variable ‘bkmask’ set but not used [-Wunused-but-set-variable] 2514 | BlockMask bkmask; | ^~~~~~ asn2gnb1.c: In function ‘Count2Seg’: asn2gnb1.c:3438:18: warning: variable ‘to’ set but not used [-Wunused-but-set-variable] 3438 | Int4 to; | ^~ asn2gnb1.c:3436:18: warning: variable ‘parent’ set but not used [-Wunused-but-set-variable] 3436 | BioseqPtr parent; | ^~~~~~ asn2gnb1.c: At top level: asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] 3714 | static ModeFlags flagTable [] = { | ^ asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c: In function ‘SeqIdWriteForTable’: asn2gnb1.c:5808:13: warning: variable ‘pdb’ set but not used [-Wunused-but-set-variable] 5808 | pdb = NULL, general = NULL, gi = NULL; | ^~~ asn2gnb1.c:5807:40: warning: variable ‘patent’ set but not used [-Wunused-but-set-variable] 5807 | SeqIdPtr accn = NULL, local = NULL, patent = NULL, | ^~~~~~ In file included from ../include/ncbi.h:58, from asn2gnb1.c:43: asn2gnb1.c: In function ‘DoImmediateFormat’: ../include/ncbistd.h:255:22: warning: comparison between ‘enum ’ and ‘enum ’ [-Wenum-compare] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^~ asn2gnb1.c:6951:19: note: in expansion of macro ‘MAX’ 6951 | max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); | ^~~ asn2gnb1.c:6930:20: warning: variable ‘is_www’ set but not used [-Wunused-but-set-variable] 6930 | Boolean is_www; | ^~~~~~ In file included from ../include/ncbi.h:58, from asn2gnb1.c:43: asn2gnb1.c: In function ‘asn2gnbk_format’: ../include/ncbistd.h:255:22: warning: comparison between ‘enum ’ and ‘enum ’ [-Wenum-compare] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^~ asn2gnb1.c:7072:19: note: in expansion of macro ‘MAX’ 7072 | max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); | ^~~ asn2gnb1.c: In function ‘asn2gnbk_cleanup’: asn2gnb1.c:7118:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable] 7118 | IntAsn2gbSectPtr iasp; | ^~~~ asn2gnb1.c: In function ‘SeqEntryToGnbk’: asn2gnb1.c:7304:22: warning: variable ‘userdata’ set but not used [-Wunused-but-set-variable] 7304 | Pointer userdata = NULL; | ^~~~~~~~ asn2gnb1.c:7299:22: warning: variable ‘gbseq’ set but not used [-Wunused-but-set-variable] 7299 | GBSeqPtr gbseq = NULL; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb1.c:58: asn2gnb1.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb1.c: In function ‘PrintFtableIntervals’: asn2gnb1.c:5463:28: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 62 [-Wformat-overflow=] 5463 | sprintf (str, "%s\t%s\t%s\n", str1, str2, label); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb1.c:43: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 66) into a destination of size 64 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb1.c:5487:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 5487 | sprintf (str, "%s\t%s\n", str1, str2); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb1.c:43: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 65 bytes into a destination of size 64 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb2.c: In function ‘s_LocusAddSuffix’: asn2gnb2.c:217:11: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable] 217 | Char ch; | ^~ asn2gnb2.c: In function ‘AddLocusBlock’: asn2gnb2.c:1361:66: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1361 | } else if ((moltype >= 2 && moltype <= 8) || moltype >= 10 && moltype <= 11) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ asn2gnb2.c: In function ‘IsSuccessor’: asn2gnb2.c:1742:15: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1742 | while (accp != '\0' && prevp != '\0') { | ^~ asn2gnb2.c:1742:10: note: did you mean to dereference the pointer? 1742 | while (accp != '\0' && prevp != '\0') { | ^ asn2gnb2.c:1742:34: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1742 | while (accp != '\0' && prevp != '\0') { | ^~ asn2gnb2.c:1742:28: note: did you mean to dereference the pointer? 1742 | while (accp != '\0' && prevp != '\0') { | ^ asn2gnb2.c: In function ‘IsProjectAccn’: asn2gnb2.c:1767:38: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1767 | for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue; | ^~ asn2gnb2.c:1767:34: note: did you mean to dereference the pointer? 1767 | for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue; | ^ asn2gnb2.c: In function ‘AddDblinkBlock’: asn2gnb2.c:2892:22: warning: variable ‘parentID’ set but not used [-Wunused-but-set-variable] 2892 | Int4 parentID; | ^~~~~~~~ asn2gnb2.c: In function ‘AddSPBlock’: asn2gnb2.c:3409:14: warning: implicit declaration of function ‘PrintDate’ [-Wimplicit-function-declaration] 3409 | string = PrintDate (spb->created); | ^~~~~~~~~ asn2gnb2.c:3409:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 3409 | string = PrintDate (spb->created); | ^ asn2gnb2.c:3417:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 3417 | string = PrintDate (spb->sequpd); | ^ asn2gnb2.c:3424:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 3424 | string = PrintDate (spb->annotupd); | ^ asn2gnb2.c: In function ‘AddSourceOrganismBlock’: asn2gnb2.c:5056:22: warning: variable ‘common’ set but not used [-Wunused-but-set-variable] 5056 | CharPtr common; | ^~~~~~ asn2gnb2.c: In function ‘GetRefsOnBioseq’: asn2gnb2.c:5893:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 5893 | Uint1 strand; | ^~~~~~ asn2gnb2.c:5890:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable] 5890 | Boolean split; | ^~~~~ asn2gnb2.c:5884:22: warning: variable ‘right’ set but not used [-Wunused-but-set-variable] 5884 | Int4 right; | ^~~~~ asn2gnb2.c:5878:22: warning: variable ‘left’ set but not used [-Wunused-but-set-variable] 5878 | Int4 left; | ^~~~ asn2gnb2.c: In function ‘AddLocusBlock’: asn2gnb2.c:239:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 239 | sprintf(segCountStr,"%d",awp->numsegs); | ^~ asn2gnb2.c:239:23: note: directive argument in the range [2, 2147483647] 239 | sprintf(segCountStr,"%d",awp->numsegs); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:244:25: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 4 [-Wformat-overflow=] 244 | sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg); | ^~~~ asn2gnb2.c:244:23: note: directive argument in the range [0, 65535] 244 | sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 32770 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:246:24: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 5 [-Wformat-overflow=] 246 | sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg); | ^~~~ asn2gnb2.c:246:23: note: directive argument in the range [0, 65535] 246 | sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg); | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1514:48: warning: ‘" title="Jump to the comment...’ directive writing 69 bytes into a region of size between 66 and 106 [-Wformat-overflow=] 1514 | sprintf (sect, "
  • Comment
  • ", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 92 and 132 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1518:46: warning: ‘" title="Jump to the feature...’ directive writing 68 bytes into a region of size between 66 and 106 [-Wformat-overflow=] 1518 | sprintf (sect, "
  • Features
  • ", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 91 and 131 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1527:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1527 | sprintf (sect, "
  • Genome
  • ", | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1532:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1532 | sprintf (sect, "
  • Contig
  • ", | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1579:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=] 1579 | sprintf (sect, "
  • Next
  • ", (long) nextGi, seqid); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 67 and 203 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1587:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=] 1587 | sprintf (sect, "
  • Next
  • ", (long) awp->nextGi, seqid); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 67 and 204 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1600:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=] 1600 | sprintf (sect, "
  • Previous
  • ", (long) prevGi, seqid); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 71 and 207 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1608:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=] 1608 | sprintf (sect, "
  • Previous
  • ", (long) awp->prevGi, seqid); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 71 and 208 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb3.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb3.c: In function ‘GetStatusForRefTrack’: asn2gnb3.c:796:22: warning: variable ‘urf’ set but not used [-Wunused-but-set-variable] 796 | UserFieldPtr ufp, urf = NULL; | ^~~ asn2gnb3.c: In function ‘AddCommentBlock’: asn2gnb3.c:2656:22: warning: variable ‘is_wgs’ set but not used [-Wunused-but-set-variable] 2656 | Boolean is_wgs = FALSE; | ^~~~~~ asn2gnb3.c: In function ‘GetSourcesOnBioseq’: asn2gnb3.c:5472:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 5472 | Uint1 strand; | ^~~~~~ asn2gnb3.c:5470:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 5470 | Int4 start; | ^~~~~ asn2gnb3.c:5468:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable] 5468 | Boolean split; | ^~~~~ asn2gnb3.c: In function ‘AddSourceFeatBlock’: asn2gnb3.c:5989:22: warning: unused variable ‘sip’ [-Wunused-variable] 5989 | SeqIdPtr sip; | ^~~ asn2gnb3.c: In function ‘GetFeatsOnCdsProduct’: asn2gnb3.c:6446:22: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable] 6446 | Boolean isRefSeq; | ^~~~~~~~ asn2gnb3.c: In function ‘GetRemoteFeatsOnCdsProduct’: asn2gnb3.c:6595:20: warning: variable ‘lastsfp’ set but not used [-Wunused-but-set-variable] 6595 | SeqFeatPtr lastsfp; | ^~~~~~~ asn2gnb3.c:6594:20: warning: variable ‘lastsap’ set but not used [-Wunused-but-set-variable] 6594 | SeqAnnotPtr lastsap; | ^~~~~~~ asn2gnb3.c:6593:20: warning: variable ‘lastright’ set but not used [-Wunused-but-set-variable] 6593 | Int4 lastright; | ^~~~~~~~~ asn2gnb3.c:6592:20: warning: variable ‘lastleft’ set but not used [-Wunused-but-set-variable] 6592 | Int4 lastleft; | ^~~~~~~~ asn2gnb3.c:6591:20: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable] 6591 | Boolean isRefSeq; | ^~~~~~~~ asn2gnb3.c: In function ‘GetFeatsOnBioseq’: asn2gnb3.c:6895:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 6895 | Int4 start; | ^~~~~ asn2gnb3.c:6866:22: warning: variable ‘icp’ set but not used [-Wunused-but-set-variable] 6866 | IntCdsBlockPtr icp; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb3.c:57: asn2gnb3.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb3.c:1582:16: warning: ‘nsWGSGapsString’ defined but not used [-Wunused-variable] 1582 | static CharPtr nsWGSGapsString = "The strings of n's in this record represent gaps between contigs or uncallable bases."; | ^~~~~~~~~~~~~~~ asn2gnb3.c:1581:16: warning: ‘nsAreGapsString’ defined but not used [-Wunused-variable] 1581 | static CharPtr nsAreGapsString = "The strings of n's in this record represent gaps between contigs, and the length of each string corresponds to the length of the gap."; | ^~~~~~~~~~~~~~~ asn2gnb3.c: In function ‘AddCommentBlock’: asn2gnb3.c:3429:29: warning: ‘nm’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3429 | if (IS_protdb_accession (nm)) { | ^~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb4.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb4.c: In function ‘FormatFeatureBlockQuals’: asn2gnb4.c:3723:50: warning: "/*" within comment [-Wcomment] 3723 | StringChr (str + 1, '(') == NULL /* && StringChr (str, ',') != NULL */) { | asn2gnb4.c:3101:24: warning: variable ‘split’ set but not used [-Wunused-but-set-variable] 3101 | Boolean split; | ^~~~~ asn2gnb4.c:3042:24: warning: variable ‘at_end’ set but not used [-Wunused-but-set-variable] 3042 | Boolean at_end = FALSE; | ^~~~~~ asn2gnb4.c: In function ‘FF_asn2gb_www_featkey_Ex’: asn2gnb4.c:5325:16: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable] 5325 | CharPtr prefix = "?"; | ^~~~~~ asn2gnb4.c: In function ‘FormatFeatureBlockEx’: asn2gnb4.c:6572:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable] 6572 | Boolean split; | ^~~~~ In file included from ../include/ncbi.h:58, from asn2gnb4.c:42: asn2gnb4.c: In function ‘DoImmediateRemoteFeatureFormat’: ../include/ncbistd.h:255:22: warning: comparison between ‘enum ’ and ‘enum ’ [-Wenum-compare] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^~ asn2gnb4.c:8796:19: note: in expansion of macro ‘MAX’ 8796 | max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); | ^~~ asn2gnb4.c: In function ‘FormatFeatureQuals’: ../include/ncbistd.h:255:22: warning: comparison between ‘enum ’ and ‘enum ’ [-Wenum-compare] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^~ asn2gnb4.c:8869:19: note: in expansion of macro ‘MAX’ 8869 | max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb4.c:57: asn2gnb4.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb4.c: In function ‘FormatFeatureBlockEx’: asn2gnb4.c:7695:26: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7695 | oldscope = SeqEntrySetScope (sep); | ^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb5.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb5.c: In function ‘FormatCitBookArt’: asn2gnb5.c:2108:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 2108 | ValNodePtr vnp; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb5.c:57: asn2gnb5.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb5.c: In function ‘FormatReferenceBlock’: asn2gnb5.c:2553:22: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 2553 | sprintf(buf,"%s%ld ", " ", (long) pat_seqid); | ^~~ asn2gnb5.c:2553:19: note: directive argument in the range [1, 2147483647] 2553 | sprintf(buf,"%s%ld ", " ", (long) pat_seqid); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb5.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb5.c:2550:22: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 2550 | sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); | ^~~ asn2gnb5.c:2550:19: note: directive argument in the range [1, 2147483647] 2550 | sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); | ^~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb5.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb6.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb6.c: In function ‘FlatLocElement’: asn2gnb6.c:2546:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2546 | if (sintp->to > 0 && | ~~~~~~~~~~~~~~^~ 2547 | (sintp->to != sintp->from || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2548 | sintp->if_from != NULL || | ~~~~~~~~~~~~~~~~~~~~~~~~~ 2549 | sintp->if_to != NULL) || | ~~~~~~~~~~~~~~~~~~~~~ asn2gnb6.c: In function ‘FormatContigBlock’: asn2gnb6.c:5701:20: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable] 5701 | DeltaSeqPtr dspnext; | ^~~~~~~ asn2gnb6.c: In function ‘ProcessGapSpecialFormat’: asn2gnb6.c:6041:13: warning: unused variable ‘sip’ [-Wunused-variable] 6041 | SeqIdPtr sip; | ^~~ asn2gnb6.c: In function ‘FormatSequenceBlock’: asn2gnb6.c:6168:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable] 6168 | IntAsn2gbSectPtr iasp; | ^~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb6.c:57: asn2gnb6.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb6.c:76:16: warning: ‘link_lat_lon’ defined but not used [-Wunused-variable] 76 | static CharPtr link_lat_lon = "https://www.ncbi.nlm.nih.gov/projects/Sequin/latlonview.html?"; | ^~~~~~~~~~~~ asn2gnb6.c: In function ‘FormatSourceFeatBlock’: asn2gnb6.c:4322:22: warning: ‘+’ directive writing 1 byte into a region of size between 0 and 128 [-Wformat-overflow=] 4322 | sprintf (tmp, "%s%s+%s%s", ns, tokens [0], ew, tokens [2]); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb6.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 131) into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ftusrstr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ftusrstr.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfeat.c gbfeat.c: In function ‘CkLabelType’: gbfeat.c:1465:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1465 | for (str = bptr; *str != '\0' && IS_ALPHA(*str) || IS_DIGIT(*str) arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbftglob.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbparint.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/parsegb.h:57, from gbparint.c:102: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gbparint.c: In function ‘Nlm_gbparselex’: gbparint.c:2134:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2134 | if (*current_col != '\0') | ^ gbparint.c: In function ‘Nlm_gbparselex_ver’: gbparint.c:2520:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2520 | if (*current_col != '\0') | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpars.c utilpars.c:112:39: warning: missing braces around initializer [-Wmissing-braces] 112 | ParFlat_AA_array[ParFlat_TOTAL_AA] = { | ^ 113 | "Ala", 'A', | { } 114 | "Asx", 'B', | { } 115 | "Cys", 'C', | { } 116 | "Asp", 'D', | { } 117 | "Glu", 'E', | { } 118 | "Phe", 'F', | { } 119 | "Gly", 'G', | { } 120 | "His", 'H', | { } 121 | "Ile", 'I', | { } 122 | "Xle", 'J', /* was - notice no 'J', breaks naive meaning of index -Karl */ | { } 123 | "Lys", 'K', | { } 124 | "Leu", 'L', | { } 125 | "Met", 'M', | { } 126 | "Asn", 'N', | { } 127 | "Pyl", 'O', /* was - no 'O' */ | { } 128 | "Pro", 'P', | { } 129 | "Gln", 'Q', | { } 130 | "Arg", 'R', | { } 131 | "Ser", 'S', | { } 132 | "Thr", 'T', | { } 133 | "Val", 'V', | { } 134 | "Trp", 'W', | { } 135 | "Sec", 'U', /* was - not in iupacaa */ | { } 136 | "Xxx", 'X', | { } 137 | "Tyr", 'Y', | { } 138 | "Glx", 'Z', | { } 139 | "TERM", '*', /* not in iupacaa */ /*changed by Tatiana 06.07.95?`*/ | { } 140 | "OTHER", 'X'}; | { } arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpub.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from utilpub.c:13: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ utilpub.c: In function ‘FindCit’: utilpub.c:998:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable] 998 | ImpFeatPtr /*UNUSED*/ifp; | ^~~ utilpub.c: In function ‘ChangeCitQual’: utilpub.c:1053:53: warning: variable ‘pub’ set but not used [-Wunused-but-set-variable] 1053 | ValNodePtr vnp, pubset = NULL, pub_min, /*UNUSED*/pub; | ^~~ utilpub.c:1052:34: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable] 1052 | ValNodePtr PNTR vnpp, /*UNUSED*/descr; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ffprint.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from ffprint.c:127: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ffprint.c: In function ‘FFBSPrint’: ffprint.c:347:19: warning: unused variable ‘byte_sp’ [-Wunused-variable] 347 | ByteStorePtr byte_sp = NULL; | ^~~~~~~ At top level: ffprint.c:420:16: warning: ‘ff_print_insert’ defined but not used [-Wunused-function] 420 | static CharPtr ff_print_insert(CharPtr str, CharPtr ins) | ^~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from ffprint.c:127: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wprint.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from wprint.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ wprint.c: In function ‘LocPrintGenome’: wprint.c:1696:14: warning: unused variable ‘sep’ [-Wunused-variable] 1696 | SeqEntryPtr sep = NULL; | ^~~ wprint.c:1695:25: warning: unused variable ‘b’ [-Wunused-variable] 1695 | BioseqPtr bsp = NULL, b = NULL; | ^ wprint.c:1695:13: warning: unused variable ‘bsp’ [-Wunused-variable] 1695 | BioseqPtr bsp = NULL, b = NULL; | ^~~ wprint.c:1692:34: warning: unused variable ‘temp’ [-Wunused-variable] 1692 | static Char buf[14], val[166], temp[166]; | ^~~~ At top level: wprint.c:1692:34: warning: ‘temp’ defined but not used [-Wunused-variable] wprint.c:79:13: warning: ‘link_gdb_map’ defined but not used [-Wunused-variable] 79 | static Char link_gdb_map[MAX_WWWBUF]; | ^~~~~~~~~~~~ wprint.c:77:13: warning: ‘link_pir’ defined but not used [-Wunused-variable] 77 | static Char link_pir[MAX_WWWBUF]; | ^~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from wprint.c:51: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ wprint.c: In function ‘PrintDate’: wprint.c:188:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 188 | sprintf(day, "%d", (int) (date -> data[3] )); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from wprint.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wprint.c: In function ‘www_db_xref’: wprint.c:969:20: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 4 and 9 [-Wformat-overflow=] 969 | sprintf(id, "%d%d", id1, id2); | ^~ wprint.c:969:17: note: directive argument in the range [-32768, 32767] 969 | sprintf(id, "%d%d", id1, id2); | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from wprint.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 13 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from wprint.c:46: wprint.c: In function ‘www_xref’: ../include/ncbistr.h:331:19: warning: ‘prefix’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ wprint.c:1358:19: note: ‘prefix’ was declared here 1358 | CharPtr s, link, prefix, ss; | ^~~~~~ In file included from ../include/ncbi.h:62, from wprint.c:46: ../include/ncbistr.h:331:19: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ wprint.c:1358:13: note: ‘link’ was declared here 1358 | CharPtr s, link, prefix, ss; | ^~~~ wprint.c: In function ‘PrintSPBlock’: wprint.c:1570:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1570 | AddLink(s); | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF satutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/satutil.h:12, from satutil.c:87: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ satutil.c: In function ‘CopyFeatureFromAlign’: satutil.c:1011:10: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable] 1011 | Boolean check_gap; | ^~~~~~~~~ At top level: satutil.c:168:16: warning: ‘bk_map_one_location’ defined but not used [-Wunused-function] 168 | static Boolean bk_map_one_location(SeqLocPtr source_loc, SeqAlignPtr align, SeqIdPtr target_sip, Boolean check_gap, Int4Ptr r_start, Int4Ptr r_stop, SeqLocPtr PNTR head_slp) | ^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from seqmgr.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqmgr.c: In function ‘SeqEntrySetScope’: seqmgr.c:311:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 311 | Boolean found; | ^~~~~ seqmgr.c: In function ‘ClearBioseqFindCache’: seqmgr.c:897:14: warning: variable ‘smp’ set but not used [-Wunused-but-set-variable] 897 | SeqMgrPtr smp; | ^~~ seqmgr.c: In function ‘GetUniGeneIDForSeqId’: seqmgr.c:3676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3676 | if(StringCmp(db_tag->db, "BSNR") == 0) | ^~ seqmgr.c:3678:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3678 | if(StringCmp(db_tag->db, "HUMGEN") == 0) | ^~ seqmgr.c: In function ‘SeqMgrGetExtraDataForOmdp’: seqmgr.c:3736:14: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable] 3736 | ObjMgrPtr omp; | ^~~ seqmgr.c: In function ‘CheckForTransSplice’: seqmgr.c:5657:14: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 5657 | SeqLocPtr prev, tmp; | ^~~~ seqmgr.c: In function ‘SeqEntryAsnOut’: seqmgr.c:11799:41: warning: variable ‘aopp_desc’ set but not used [-Wunused-but-set-variable] 11799 | AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL; | ^~~~~~~~~ seqmgr.c:11799:23: warning: variable ‘aopp_feat’ set but not used [-Wunused-but-set-variable] 11799 | AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL; | ^~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from seqmgr.c:63: seqmgr.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from objmgr.c:51: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmgr.c: In function ‘ObjMgrReapOne’: objmgr.c:2727:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2727 | if (omp->reaping) /* protect against recursion caused by ObjMgrSendMsg */ | ^~ objmgr.c:2730:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2730 | lowest = UINT4_MAX; | ^~~~~~ objmgr.c: In function ‘ObjMgrDeSelectStructFunc’: objmgr.c:3767:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3767 | if (next != NULL) | ^~ objmgr.c:3770:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3770 | ObjMgrSendDeSelMsg (omp, ssp->entityID, ssp->itemID, ssp->itemtype, ssp->regiontype, ssp->region); | ^~~~~~~~~~~~~~~~~~ objmgr.c: In function ‘ObjMgrSelectFunc2’: objmgr.c:4031:22: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 4031 | Boolean retval = FALSE; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gather.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from gather.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gather.c: In function ‘AttachDataProc’: gather.c:4827:30: warning: variable ‘into_seqentry’ set but not used [-Wunused-but-set-variable] 4827 | Boolean no_good = FALSE, into_seqentry = FALSE; | ^~~~~~~~~~~~~ gather.c: In function ‘GatherSeqFeat’: gather.c:1570:44: warning: ‘newid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1570 | tslp = SeqLocReMap(newid, slp, cbp->loc, offset, rev); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gather.c:1530:86: warning: ‘max_interval’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1530 | lrdp = (GatherRangePtr)MemNew((size_t)((max_interval + 20) * sizeof(GatherRange))); | ^ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from gather.c:44: ../include/ncbimem.h:232:23: warning: ‘lrdp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ gather.c:1404:38: note: ‘lrdp’ was declared here 1404 | GatherRangePtr rdp = NULL, trdp, lrdp; | ^~~~ gather.c: In function ‘gather_align_data’: gather.c:2280:12: warning: ‘h_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2280 | if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gather.c:2280:11: warning: ‘h_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2280 | if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/ | ^ gather.c:2219:15: warning: ‘master_loc’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2219 | SeqLocPtr master_loc, m_loc; | ^~~~~~~~~~ gather.c:2218:10: warning: ‘mag_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2218 | Int4 mag_val; /*the magnification value */ | ^~~~~~~ gather.c: In function ‘GatherBioseqFunc’: gather.c:3307:53: warning: ‘tlen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3307 | rdp->right = offset + tlen - 1; | ~~~~~~~^~~~~~ gather.c:3280:39: warning: ‘trunc_r’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3280 | if (trunc_r) | ^ gather.c:3285:40: warning: ‘trunc_l’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3285 | if (trunc_l) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accmmdbs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from accmmdbs.c:120: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acccn3ds.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from acccn3ds.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lsqfetch.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/lsqfetch.h:110, from lsqfetch.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ lsqfetch.c: In function ‘ChangeLocalToGenbank’: lsqfetch.c:1403:21: warning: ‘%s’ directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=] 1403 | sprintf (tmp, "gb|%s", id); | ^~ ~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/lsqfetch.h:110, from lsqfetch.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 44 bytes into a destination of size 41 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF findrepl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from findrepl.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF codon.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/codon.h:61, from codon.c:2: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ codon.c: In function ‘make_cds_paragraph’: codon.c:262:7: warning: variable ‘space_len’ set but not used [-Wunused-but-set-variable] 262 | Int4 space_len, i; | ^~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzcoll.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from jzcoll.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ jzcoll.c: In function ‘load_default_matrix’: jzcoll.c:99:13: warning: array subscript has type ‘char’ [-Wchar-subscripts] 99 | ss[pchars[i]][pchars[j]] = webb_blosum62[i][j]; | ~~~~~~^~~ jzcoll.c:99:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 99 | ss[pchars[i]][pchars[j]] = webb_blosum62[i][j]; | ~~~~~~^~~ jzcoll.c:101:12: warning: array subscript has type ‘char’ [-Wchar-subscripts] 101 | ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4; | ~~~~~~^~~ jzcoll.c:101:38: warning: array subscript has type ‘char’ [-Wchar-subscripts] 101 | ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4; | ~~~~~~^~~ jzcoll.c: In function ‘GetUseThisGi’: jzcoll.c:143:10: warning: unused variable ‘retval’ [-Wunused-variable] 143 | Boolean retval=FALSE; | ^~~~~~ jzcoll.c: In function ‘buffer_for_feature’: jzcoll.c:514:7: warning: unused variable ‘i’ [-Wunused-variable] 514 | Int2 i=0; | ^ jzcoll.c: In function ‘ProcessTextInsertion’: jzcoll.c:878:7: warning: variable ‘last_ins’ set but not used [-Wunused-but-set-variable] 878 | Int4 last_ins; | ^~~~~~~~ jzcoll.c: In function ‘satcollfunc’: jzcoll.c:1723:12: warning: variable ‘head’ set but not used [-Wunused-but-set-variable] 1723 | SeqLocPtr head; | ^~~~ jzcoll.c:1721:8: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 1721 | Uint1 strand; | ^~~~~~ jzcoll.c:1720:7: warning: variable ‘current_pos’ set but not used [-Wunused-but-set-variable] 1720 | Int4 current_pos; | ^~~~~~~~~~~ jzcoll.c:1714:12: warning: unused variable ‘slp’ [-Wunused-variable] 1714 | SeqLocPtr slp = NULL; | ^~~ jzcoll.c: In function ‘coll_align_data’: jzcoll.c:2631:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 2631 | sprintf(buf, "%d", gilist->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld jzcoll.c: In function ‘collect_anpnode_with_option’: jzcoll.c:3053:13: warning: unused variable ‘prev’ [-Wunused-variable] 3053 | ValNodePtr prev = NULL; | ^~~~ jzcoll.c: In function ‘ck_seqfeat_extra’: jzcoll.c:3414:10: warning: unused variable ‘has_gb’ [-Wunused-variable] 3414 | Boolean has_gb = FALSE, has_med = FALSE; | ^~~~~~ jzcoll.c: In function ‘collseqfunc’: jzcoll.c:3768:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3768 | if(omtp->labelfunc !=NULL) | ^~ jzcoll.c:3770:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3770 | fnp->landmark = check_feature_for_landmark(chp->thislabel, chp->gdata, sfp, gcp, chp->priority); | ^~~ jzcoll.c: In function ‘load_open_close_sts_mark’: jzcoll.c:4010:10: warning: variable ‘collected’ set but not used [-Wunused-but-set-variable] 4010 | Boolean collected = FALSE; | ^~~~~~~~~ jzcoll.c: In function ‘FeatNodeCompProc’: jzcoll.c:4225:20: warning: variable ‘gr2’ set but not used [-Wunused-but-set-variable] 4225 | GatherRange gr1, gr2; | ^~~ jzcoll.c:4225:15: warning: variable ‘gr1’ set but not used [-Wunused-but-set-variable] 4225 | GatherRange gr1, gr2; | ^~~ At top level: jzcoll.c:2316:16: warning: ‘stop_collecting_alignment’ defined but not used [-Wunused-function] 2316 | static Boolean stop_collecting_alignment(ValNodePtr anp_list, Int4 max_num) | ^~~~~~~~~~~~~~~~~~~~~~~~~ jzcoll.c:1654:16: warning: ‘collect_sequence_label’ defined but not used [-Wunused-function] 1654 | static Boolean collect_sequence_label(Uint1 format) | ^~~~~~~~~~~~~~~~~~~~~~ jzcoll.c: In function ‘load_text.isra’: jzcoll.c:421:41: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 421 | stdaa_res = SeqMapTableConvert(smtp, m_res); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzmisc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/jzmisc.h:86, from jzmisc.c:23: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF maputil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from maputil.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ maputil.c: In function ‘load_gene_list’: maputil.c:690:8: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 690 | Uint1 val; | ^~~ maputil.c: In function ‘gmarkfunc’: maputil.c:985:13: warning: variable ‘syn’ set but not used [-Wunused-but-set-variable] 985 | ValNodePtr syn = NULL; | ^~~ maputil.c: In function ‘get_location_for_query’: cc1: warning: function may return address of local variable [-Wreturn-local-addr] maputil.c:1190:9: note: declared here 1190 | SeqLoc sl; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mconsist.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/mconsist.h:4, from mconsist.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macroapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from macroapi.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ macroapi.c: In function ‘AdvancedStringCompare’: macroapi.c:4463:23: warning: variable ‘init_target_match_len’ set but not used [-Wunused-but-set-variable] 4463 | Int4 len1, len2, init_target_match_len = 0, target_match_len = 0; | ^~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function ‘RemoveGBQualMatch’: macroapi.c:6981:27: warning: variable ‘does_match’ set but not used [-Wunused-but-set-variable] 6981 | Boolean rval = FALSE, does_match, do_remove; | ^~~~~~~~~~ macroapi.c: In function ‘ParseCodonsRecognizedFromCommaDelimitedList’: macroapi.c:7726:41: warning: pointer targets in passing argument 1 of ‘ExpandWobbleCodon’ differ in signedness [-Wpointer-sign] 7726 | wobble_list = ExpandWobbleCodon(codon); | ^~~~~ | | | Nlm_Uint1 * {aka unsigned char *} macroapi.c:7636:46: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} 7636 | static ValNodePtr ExpandWobbleCodon (CharPtr codon) macroapi.c: In function ‘GetQualFromFeatureAnyType’: macroapi.c:8537:8: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 8536 | if (str == NULL | ~~~~~~~~~~~ 8537 | && (field->choice == FeatQualChoice_legal_qual && field->data.intvalue == Feat_qual_legal_pseudo) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:8681:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 8681 | sprintf (buf, "%d", vnp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘SetNameInPrimerList’: macroapi.c:10682:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable] 10682 | PCRPrimerPtr pp, prev_pp = NULL; | ^~~~~~~ macroapi.c: In function ‘SetSeqInPrimerList’: macroapi.c:10703:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable] 10703 | PCRPrimerPtr pp, prev_pp = NULL; | ^~~~~~~ macroapi.c: In function ‘GetGenomeProjectIdFromBioseq’: macroapi.c:12881:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 12881 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘RemoveGenomeProjectIdFromBioseq’: macroapi.c:12916:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 12916 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘SetGenomeProjectIdOnBioseq’: macroapi.c:12957:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 12957 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘GetPubFieldFromPub’: macroapi.c:15043:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 15043 | sprintf (str, "%d", the_pub->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘GetCitListsForSeqEntry’: macroapi.c:15825:19: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 15825 | Uint2 entityID; | ^~~~~~~~ macroapi.c:15823:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable] 15823 | Boolean okay; | ^~~~ macroapi.c: In function ‘GetPubclassQualFromPub’: macroapi.c:18324:11: warning: unused variable ‘str’ [-Wunused-variable] 18324 | CharPtr str = NULL; | ^~~ macroapi.c: In function ‘GetPubMLStatus’: macroapi.c:18681:14: warning: variable ‘csp’ set but not used [-Wunused-but-set-variable] 18681 | CitSubPtr csp; | ^~~ macroapi.c: In function ‘CollectDBLinkObjectsForApply’: macroapi.c:20029:72: warning: unused variable ‘tmp_tail’ [-Wunused-variable] 20029 | ValNodePtr target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp; | ^~~~~~~~ macroapi.c:20029:55: warning: unused variable ‘tmp_list’ [-Wunused-variable] 20029 | ValNodePtr target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp; | ^~~~~~~~ macroapi.c: In function ‘DoConvertActionToObjectListEx’: macroapi.c:20844:20: warning: unused variable ‘already_added’ [-Wunused-variable] 20844 | Boolean already_added, field_change; | ^~~~~~~~~~~~~ macroapi.c: In function ‘ApplyPartial5SetActionToSeqFeat’: macroapi.c:25749:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 25749 | Uint1 strand; | ^~~~~~ macroapi.c: In function ‘ApplyPartial3SetActionToSeqFeat’: macroapi.c:25872:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 25872 | Uint1 strand; | ^~~~~~ macroapi.c: In function ‘ApplyPartialBothSetActionToSeqFeat’: macroapi.c:25939:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 25939 | Uint1 strand; | ^~~~~~ macroapi.c: In function ‘FindPosBeforeFeat’: macroapi.c:26236:15: warning: variable ‘regulator’ set but not used [-Wunused-but-set-variable] 26236 | SeqFeatPtr regulator = NULL, candidate; | ^~~~~~~~~ macroapi.c: In function ‘PerformAutofixInSeqEntry’: macroapi.c:29471:8: warning: unused variable ‘num_created’ [-Wunused-variable] 29471 | Int4 num_created = 0; | ^~~~~~~~~~~ macroapi.c: In function ‘AddFileDescriptors’: macroapi.c:29871:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 29871 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ^~~ macroapi.c: In function ‘ApplyMacroToSeqEntryExEx’: macroapi.c:31907:28: warning: too many arguments for format [-Wformat-extra-args] 31907 | fprintf (log_fp, "Instantiated protein titles\n", num); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function ‘PreprocessAddDescriptorListMacro’: macroapi.c:32020:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 32020 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ^~~ macroapi.c: In function ‘FieldTypeFromString’: macroapi.c:32370:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 32370 | if (ft == NULL && StringsAreEquivalent(str, "location") || StringsAreEquivalent(str, "genome")) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function ‘SummarizeRemoveOutsideAction’: macroapi.c:32939:11: warning: unused variable ‘case_insensitive’ [-Wunused-variable] 32939 | CharPtr case_insensitive = " (case insensitive)"; | ^~~~~~~~~~~~~~~~ macroapi.c: In function ‘GetObjectTableForTabTable’: macroapi.c:37508:63: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 37508 | ValNodePtr obj_table = NULL, obj_row, last_obj = NULL, tmp, last = NULL; | ^~~~ macroapi.c: In function ‘FormatMultipleDestinationErrorMessage’: macroapi.c:37987:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 37987 | sprintf (buf, "%d", vnp->data.intvalue + 1); | ~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘CheckObjTableForExistingText’: macroapi.c:38084:14: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 38084 | Uint2 entityID; | ^~~~~~~~ macroapi.c: In function ‘FixSuspectProductNamesInEntrezGene’: macroapi.c:40352:18: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable] 40352 | CharPtr prefix = NULL; | ^~~~~~ In file included from ../include/tax3api.h:51, from macroapi.c:67: macroapi.c: At top level: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ macroapi.c:37233:16: warning: ‘IsFieldTypeProteinDesc’ defined but not used [-Wunused-function] 37233 | static Boolean IsFieldTypeProteinDesc (FieldTypePtr ft) | ^~~~~~~~~~~~~~~~~~~~~~ macroapi.c:27097:13: warning: ‘GetDescriptorTypeFromDescriptorChoice’ defined but not used [-Wunused-function] 27097 | static Int4 GetDescriptorTypeFromDescriptorChoice (Uint1 descriptor_choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:21298:13: warning: ‘GetFieldsFromAECR’ defined but not used [-Wunused-function] 21298 | static void GetFieldsFromAECR (AECRActionPtr act, FieldTypePtr PNTR pField, ValNodePtr PNTR pFieldPair) | ^~~~~~~~~~~~~~~~~ macroapi.c:20787:16: warning: ‘NoFieldChange’ defined but not used [-Wunused-function] 20787 | static Boolean NoFieldChange (CharPtr new_val, ValNodePtr vnp, FieldTypePtr field_from, StringConstraintPtr scp, BatchExtraPtr batch_extra) | ^~~~~~~~~~~~~ macroapi.c:16014:13: warning: ‘InitBatchExtraForAECRActionAndObjectList’ defined but not used [-Wunused-function] 16014 | static void InitBatchExtraForAECRActionAndObjectList (BatchExtraPtr batch_extra, AECRActionPtr action, ValNodePtr object_list) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:10389:16: warning: ‘HasMultiplePrimerSets’ defined but not used [-Wunused-function] 10389 | static Boolean HasMultiplePrimerSets (CharPtr value) | ^~~~~~~~~~~~~~~~~~~~~ macroapi.c:5482:16: warning: ‘DoesLocationMatchConstraint’ defined but not used [-Wunused-function] 5482 | static Boolean DoesLocationMatchConstraint (SeqLocPtr slp, LocationConstraintPtr lcp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:4590:13: warning: ‘TestAdvancedStringMatch’ defined but not used [-Wunused-function] 4590 | static void TestAdvancedStringMatch (void) | ^~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:2806:13: warning: ‘OriginFromOriginName’ defined but not used [-Wunused-function] 2806 | static Int4 OriginFromOriginName (CharPtr origin_name) | ^~~~~~~~~~~~~~~~~~~~ macroapi.c:1200:16: warning: ‘IsObjectAppropriateForFieldPair’ defined but not used [-Wunused-function] 1200 | static Boolean IsObjectAppropriateForFieldPair (Uint1 choice, Pointer data, FieldPairTypePtr fieldpair) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function ‘AlsoChangeMrnaForObject’: macroapi.c:20637:10: warning: ‘mrna’ may be used uninitialized in this function [-Wmaybe-uninitialized] 20637 | if (mrna != NULL) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpedit.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from salpedit.c:2: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salpedit.c: In function ‘SeqAlignInsert’: salpedit.c:162:12: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable] 162 | StdSegPtr ssp; | ^~~ salpedit.c:161:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable] 161 | DenseDiagPtr ddp; | ^~~ At top level: salpedit.c:4120:18: warning: ‘build_slp_for_gcontig’ defined but not used [-Wunused-function] 4120 | static SeqLocPtr build_slp_for_gcontig (BioseqPtr gcontig_bsp, SeqIdPtr gcontig_sip) | ^~~~~~~~~~~~~~~~~~~~~ salpedit.c:4073:17: warning: ‘get_best_id’ defined but not used [-Wunused-function] 4073 | static SeqIdPtr get_best_id(BioseqPtr bsp) | ^~~~~~~~~~~ salpedit.c:4046:16: warning: ‘second_seq_has_gap’ defined but not used [-Wunused-function] 4046 | static Boolean second_seq_has_gap(BioseqPtr s_bsp) | ^~~~~~~~~~~~~~~~~~ salpedit.c:4016:18: warning: ‘dup_mul_locs’ defined but not used [-Wunused-function] 4016 | static SeqLocPtr dup_mul_locs(SeqLocPtr slp) | ^~~~~~~~~~~~ salpedit.c:3968:18: warning: ‘create_fake_bioseq’ defined but not used [-Wunused-function] 3968 | static BioseqPtr create_fake_bioseq(SeqLocPtr seq_loc, CharPtr fake_name) | ^~~~~~~~~~~~~~~~~~ salpedit.c:3937:13: warning: ‘reverse_seqloc’ defined but not used [-Wunused-function] 3937 | static void reverse_seqloc (SeqLocPtr s_loc) | ^~~~~~~~~~~~~~ salpedit.c:3850:13: warning: ‘save_output’ defined but not used [-Wunused-function] 3850 | static void save_output (SeqIdPtr sip, CharPtr f_name, SeqAlignPtr align) | ^~~~~~~~~~~ salpedit.c:3836:13: warning: ‘get_align_list_len’ defined but not used [-Wunused-function] 3836 | static Int4 get_align_list_len(SeqAlignPtr align) | ^~~~~~~~~~~~~~~~~~ salpedit.c:2939:20: warning: ‘open_annot’ defined but not used [-Wunused-function] 2939 | static SeqAnnotPtr open_annot(CharPtr f_name) | ^~~~~~~~~~ salpedit.c:2835:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function] 2835 | static void SeqAnnotWrite(SeqAlignPtr align) | ^~~~~~~~~~~~~ salpedit.c:2653:16: warning: ‘FigureAlignRange’ defined but not used [-Wunused-function] 2653 | static Boolean FigureAlignRange(SeqAlignPtr align, SeqLocPtr m_loc, SeqLocPtr s_loc) | ^~~~~~~~~~~~~~~~ salpedit.c:1665:16: warning: ‘free_diag_in_list’ defined but not used [-Wunused-function] 1665 | static Boolean free_diag_in_list(ValNodePtr ddp_list, DenseDiagPtr ddp) | ^~~~~~~~~~~~~~~~~ salpedit.c:1605:16: warning: ‘is_overlap’ defined but not used [-Wunused-function] 1605 | static Boolean is_overlap(BoolPtr status, Int4 from, Int4 len) | ^~~~~~~~~~ salpedit.c:1560:13: warning: ‘filter_wrong_orientation’ defined but not used [-Wunused-function] 1560 | static void filter_wrong_orientation (SeqAlignPtr align, Boolean same_orient) | ^~~~~~~~~~~~~~~~~~~~~~~~ salpedit.c:1479:16: warning: ‘filter_this_seg’ defined but not used [-Wunused-function] 1479 | static Boolean filter_this_seg (DenseDiagPtr curr, DenseDiagPtr PNTR h_list, Int2 order) | ^~~~~~~~~~~~~~~ salpedit.c:1422:16: warning: ‘convert_ddp_to_array’ defined but not used [-Wunused-function] 1422 | static Int4Ptr convert_ddp_to_array (ValNodePtr ddp_list, Uint1 strand, Int2 s_order, Int4Ptr p_num) | ^~~~~~~~~~~~~~~~~~~~ salpedit.c:1387:14: warning: ‘has_too_much_overlap’ defined but not used [-Wunused-function] 1387 | static Uint1 has_too_much_overlap (Int4 start_1, Int4 stop_1, Int4 start_2, Int4 stop_2) | ^~~~~~~~~~~~~~~~~~~~ salpedit.c:1281:13: warning: ‘attach_new_align’ defined but not used [-Wunused-function] 1281 | static void attach_new_align(SeqAlignPtr new_salp, SeqAlignPtr PNTR old) { | ^~~~~~~~~~~~~~~~ salpedit.c:1169:20: warning: ‘JZSeqAlignMerge’ defined but not used [-Wunused-function] 1169 | static SeqAlignPtr JZSeqAlignMerge(SeqAlignPtr f_align, SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr t_align) | ^~~~~~~~~~~~~~~ salpedit.c:254:16: warning: ‘is_gap_segment’ defined but not used [-Wunused-function] 254 | static Boolean is_gap_segment(Int4Ptr c_starts, Int2 dim) | ^~~~~~~~~~~~~~ salpedit.c:158:20: warning: ‘SeqAlignInsert’ defined but not used [-Wunused-function] 158 | static SeqAlignPtr SeqAlignInsert(SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr head, Boolean merge, Boolean add_insertion) | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpstat.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from salpstat.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salpstat.c: In function ‘DenseSegStats’: salpstat.c:310:10: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 310 | if(dsp && (((mmatches || mmismatches) && bsp_1 && bsp_2)) || !(mmatches || mmismatches)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salpstat.c: In function ‘SeqAlignScoreFix’: salpstat.c:162:20: warning: ‘sp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized] 162 | sp_last->next = (ScorePtr) MemNew(sizeof(Score)); salpstat.c: In function ‘DenseSegStats’: salpstat.c:369:31: warning: ‘spp_2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 369 | res_2 = SeqPortGetResidue(spp_2); | ^~~~~~~~~~~~~~~~~~~~~~~~ salpstat.c:368:31: warning: ‘spp_1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 368 | res_1 = SeqPortGetResidue(spp_1); | ^~~~~~~~~~~~~~~~~~~~~~~~ salpstat.c: In function ‘SeqAlignWindowScoreFN’: salpstat.c:2038:45: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2038 | residue_score[pos]=score; | ~~~~~~~~~~~~~~~~~~^~~~~~ salpstat.c:2020:34: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2020 | qgaps_score[last_pos]=-(g_open+len*g_ext); | ^ salpstat.c: In function ‘SeqAlignWindowScore’: salpstat.c:2214:12: warning: ‘scoreptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2214 | return scoreptr; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpacc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salpacc.h:33, from salpacc.c:40: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salpacc.c: In function ‘SeqAlignStrand’: salpacc.c:334:20: warning: unused variable ‘this_strand’ [-Wunused-variable] 334 | Uint1Ptr this_strand=Seq_strand_unknown; | ^~~~~~~~~~~ salpacc.c: In function ‘SeqAlignStop’: salpacc.c:561:13: warning: ‘this_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 561 | if(this_stop!=-1) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salprop.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salprop.h:46, from salprop.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salprop.c: In function ‘CopySeqLocFromSeqAlign’: salprop.c:398:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 398 | else | ^~~~ salprop.c:401:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 401 | if(crp != NULL) /*for coding region features*/ | ^~ salprop.c:291:12: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable] 291 | Boolean check_gap; | ^~~~~~~~~ salprop.c: In function ‘FeatListToProp’: salprop.c:1336:20: warning: variable ‘feat_itemID’ set but not used [-Wunused-but-set-variable] 1336 | Uint4 feat_itemID; | ^~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from salprop.c:46: salprop.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from salprop.c:42: ../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable] 50 | static CharPtr GBFeat[number_GBFeat] = { | ^~~~~~ salprop.c: In function ‘ApplyNewSeqFeat’: salprop.c:620:11: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 620 | j = stop - SeqLocStop(sfp_location); | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salprop.c:514:17: note: ‘stop’ was declared here 514 | stop, | ^~~~ salprop.c:718:27: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 718 | SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight); | ~~~^~~~~~~~~~ salprop.c:674:17: note: ‘sfp’ was declared here 674 | SeqFeatPtr sfp; | ^~~ salprop.c:733:24: warning: ‘ppp.p5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 733 | if (!sfp_p5 && ppp.p5) | ~~~~~~~~^~~~~~~~~ salprop.c:679:17: note: ‘ppp.p5’ was declared here 679 | ParTials ppp; | ^~~ salprop.c:737:12: warning: ‘ppp.p3’ may be used uninitialized in this function [-Wmaybe-uninitialized] 737 | SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salprop.c:679:17: note: ‘ppp.p3’ was declared here 679 | ParTials ppp; | ^~~ salprop.c:861:40: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 861 | if ((val2=is_id_unique (entityID, SeqLocId(sfp->product)))) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsap.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salsap.h:57, from salsap.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salsap.c: In function ‘DenseDiagToDenseSegFunc’: salsap.c:2912:30: warning: variable ‘slpstop2’ set but not used [-Wunused-but-set-variable] 2912 | slpstop1 = 0, slpstop2 = 0; | ^~~~~~~~ salsap.c:2912:16: warning: variable ‘slpstop1’ set but not used [-Wunused-but-set-variable] 2912 | slpstop1 = 0, slpstop2 = 0; | ^~~~~~~~ salsap.c:2911:31: warning: variable ‘slpstart2’ set but not used [-Wunused-but-set-variable] 2911 | Int4 slpstart1 = 0, slpstart2 = 0, | ^~~~~~~~~ salsap.c:2911:16: warning: variable ‘slpstart1’ set but not used [-Wunused-but-set-variable] 2911 | Int4 slpstart1 = 0, slpstart2 = 0, | ^~~~~~~~~ salsap.c:2909:28: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable] 2909 | Int4 start1 = 0, start2 = 0, | ^~~~~~ salsap.c:2909:16: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable] 2909 | Int4 start1 = 0, start2 = 0, | ^~~~~~ In file included from ../include/sqnutils.h:51, from salsap.c:47: salsap.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ salsap.c:3631:13: warning: ‘FindSeqAlignCallback’ defined but not used [-Wunused-function] 3631 | static void FindSeqAlignCallback (SeqEntryPtr sep, Pointer mydata, | ^~~~~~~~~~~~~~~~~~~~ salsap.c:2157:16: warning: ‘AreDenseSegSegmentsValid’ defined but not used [-Wunused-function] 2157 | static Boolean AreDenseSegSegmentsValid (DenseSegPtr dsp, Int4 start, Int4 num) | ^~~~~~~~~~~~~~~~~~~~~~~~ salsap.c: In function ‘SeqAlignEndExtend’: salsap.c:986:18: warning: ‘n_strands’ may be used uninitialized in this function [-Wmaybe-uninitialized] 986 | Uint1Ptr n_strands; | ^~~~~~~~~ salsap.c: In function ‘CleanStrandsSeqAlign’: salsap.c:1662:29: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1662 | for (j=0; j < numseg*dim && strandp!=NULL; j++, strandp++) | ~~~~~~^~~~ salsap.c:1613:15: warning: ‘numseg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1613 | Int4 numseg; | ^~~~~~ salsap.c:1611:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1611 | Int4Ptr startp; | ^~~~~~ salsap.c:1610:15: warning: ‘lenp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1610 | Int4Ptr lenp; | ^~~~ salsap.c: In function ‘LocalAlignToSeqAnnotDimn’: salsap.c:1851:9: warning: ‘the_lens’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1851 | while ( j < lens ) | ^ salsap.c: In function ‘multseqalign_from_pairseqalign’: salsap.c:4394:19: warning: ‘strandp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4394 | strandp++; | ~~~~~~~^~ salsap.c:4245:6: warning: ‘ok’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4245 | if (!ok) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salstruc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salstruc.h:56, from salstruc.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salstruc.c: In function ‘prot_to_rputprot’: salstruc.c:734:18: warning: comparison between pointer and zero character constant [-Wpointer-compare] 734 | if (strptmp == '\0') break; | ^~ salstruc.c:734:10: note: did you mean to dereference the pointer? 734 | if (strptmp == '\0') break; | ^ salstruc.c: In function ‘data_collect_arrange’: salstruc.c:1338:22: warning: variable ‘maxscroll’ set but not used [-Wunused-but-set-variable] 1338 | Int4 maxscroll; | ^~~~~~~~~ salstruc.c: In function ‘ShowAlignmentText’: salstruc.c:2203:29: warning: variable ‘itemtype’ set but not used [-Wunused-but-set-variable] 2203 | Uint2 entityID, itemtype; | ^~~~~~~~ In file included from ../include/sqnutils.h:51, from salstruc.c:40: salstruc.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from salstruc.c:41: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salstruc.c: In function ‘data_collect_arrange’: salstruc.c:920:22: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 920 | bspssp = new_seledstruct (entityID, itemID, OBJ_(tdp->feattype), 0,itemID, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 | from + adp->bufferstart, to + adp->bufferstart, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 | bspsip, Seq_strand_plus, TRUE, NULL, (Pointer) tdp, 0, 1); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salstruc.c:872:19: note: ‘entityID’ was declared here 872 | Uint2 entityID; | ^~~~~~~~ salstruc.c:1093:44: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1093 | seq_info->entityID=entityID; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ salstruc.c:1005:17: note: ‘entityID’ was declared here 1005 | Uint2 entityID; | ^~~~~~~~ salstruc.c: In function ‘ShowAlignmentText’: salstruc.c:2194:19: warning: ‘bspsip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2194 | SeqIdPtr bspsip; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from salutil.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salutil.c: In function ‘ReadBufferFromSap’: salutil.c:128:24: warning: variable ‘buffstart’ set but not used [-Wunused-but-set-variable] 128 | Int4 bufflen, buffstart; | ^~~~~~~~~ salutil.c:127:15: warning: variable ‘sumstart’ set but not used [-Wunused-but-set-variable] 127 | Int4 sumstart; | ^~~~~~~~ salutil.c: In function ‘IS_protSeqLoc’: salutil.c:594:11: warning: variable ‘seq’ set but not used [-Wunused-but-set-variable] 594 | CharPtr seq; | ^~~ salutil.c: In function ‘ReplaceSeqIdWithSeqId’: salutil.c:1236:20: warning: variable ‘oldscope’ set but not used [-Wunused-but-set-variable] 1236 | SeqEntryPtr oldscope; | ^~~~~~~~ salutil.c: In function ‘del_ssp_fromid’: salutil.c:1722:24: warning: variable ‘pressp’ set but not used [-Wunused-but-set-variable] 1722 | SelEdStructPtr ssp, pressp = NULL; | ^~~~~~ salutil.c: In function ‘checkCDSselect_forprotein’: salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2510 | if (feat != NULL) | ^ salutil.c: In function ‘NoMoreSegGapForOneAlignment’: salutil.c:3647:8: warning: implicit declaration of function ‘AlnMgr2IndexSingleChildSeqAlign’ [-Wimplicit-function-declaration] 3647 | AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from salutil.c:53: salutil.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ salutil.c: In function ‘sesp_to_slp’: salutil.c:1927:18: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1927 | Int2 j,k; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udvseq.h:100, from udvseq.c:112: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ udvseq.c: In function ‘UDV_EncodeIdxFeat’: udvseq.c:448:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 448 | return *((Int4Ptr) index_g); | ~^~~~~~~~~~~~~~~~~~ udvseq.c: In function ‘UDV_BigEncodeIdxFeat’: udvseq.c:473:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 473 | return *((Uint8Ptr) index_g); | ~^~~~~~~~~~~~~~~~~~~ udvseq.c: In function ‘UDV_ParaGFTableFeatures’: udvseq.c:947:22: warning: ‘nFeatLines’ may be used uninitialized in this function [-Wmaybe-uninitialized] 947 | pgp->nFeatLines=nFeatLines/*-decal*/; | ~~~~~~~~~~~~~~~^~~~~~~~~~~ udvseq.c:966:32: warning: ‘PosFeat’ may be used uninitialized in this function [-Wmaybe-uninitialized] 966 | (Uint2) context->index,(Uint2)PosFeat-decal,(Uint2)0)); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blocks.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/blocks.h:88, from blocks.c:93: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blocks.c: In function ‘IndexBlocks’: blocks.c:928:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point] 928 | segp_align->to = segp_align->to = -1; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ blocks.c: In function ‘IndexNewBlocks’: blocks.c:1084:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point] 1084 | segp_align->to = segp_align->to = -1; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ blocks.c: In function ‘GetBlockOrientation’: blocks.c:2383:11: warning: ‘orient’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2383 | return orient; | ^~~~~~ blocks.c: In function ‘SAMergeBlocks’: blocks.c:2165:21: warning: ‘tmp2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2165 | tmp2 = tmp2->next; | ~~~~~^~~~~~~~~~~~ blocks.c:1572:28: warning: ‘tmp_head’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1572 | merged->segp_head = tmp_head; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ blocks.c:1470:27: warning: ‘tmp_curr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1470 | tmp1->prev = tmp_curr; | ~~~~~~~~~~~^~~~~~~~~~ blocks.c:1709:27: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1709 | tmp1->prev = prev; | ~~~~~~~~~~~^~~~~~ blocks.c:1670:34: warning: ‘new_sabp1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1670 | new_sabp1->segp_head = tmp_head; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ blocks.c: In function ‘SASplitBlock’: blocks.c:2796:25: warning: ‘segp2_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2796 | segp2->prev = segp2_prev; | ~~~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pgppop.c pgppop.c:58:2: warning: missing braces around initializer [-Wmissing-braces] 58 | { | ^ 59 | /* Red Grn Blue Color ColorID Old Hex New Hex */ 60 | 255, 255, 255, /* default 0 0xffffff - */ | { } 61 | 255, 00, 153, /* hotpink 1 0xff1493 0xff0099 */ | { } 62 | 255, 0, 255, /* magenta 2 0xff00ff - */ | { } 63 | 153, 51, 255, /* purple 3 0x9b30ff 0x9933ff */ | { } 64 | 0, 0, 255, /* blue 4 0x0000ff - */ | { } 65 | 00, 153, 255, /* sky 5 0x1e90ff 0x0099ff */ | { } 66 | 0, 255, 255, /* cyan 6 0x00ffff - */ | { } 67 | 0, 255, 153, /* sea 7 0x00ff8f 0x00ff99 */ | { } 68 | 0, 255, 0, /* green 8 0x00ff00 - */ | { } 69 | 255, 255, 0, /* yellow 9 0xffff00 - */ | { } 70 | 255, 204, 0, /* gold 10 0xffa500 0xffcc00 */ | { } 71 | 255, 102, 0, /* orange 11 0xff4500 0xff6600 */ | { } 72 | 255, 0, 0, /* red 12 0xff0000 - */ | { } 73 | 255, 153, 153, /* pink 13 0xff7256 0xff9999 */ | { } 74 | 255, 204, 204, /* pinktint 14 0xffaeb9 0xffcccc */ | { } 75 | 255, 255, 255, /* white 15 0xffffff -*/ | { } 76 | 0, 0, 0, /* black 16 0x000000 - */ | { } 77 | 204, 204, 255, /* bluetint 17 0xb0e2ff - 0xccccff*/ | { } 78 | 153, 255, 153, /* greentint 18 0x9aff9a - 0x99ff99 */ | { } 79 | 255, 255, 153, /* yellowtint 19 0xffec8b - 0xffff99 */ | { } 80 | 102, 102, 102, /* gray 20 0x7d7d7d 0x666666 */ | { } 81 | 153, 102, 51, /* brown 21 0x8b5742 01x996633 */ | { } 82 | 255, 0, 0, /* perm colors 22: red 0xff0000 - */ | { } 83 | 0, 255, 0, /* perm colors 23: green 0x00ff00 - */ | { } 84 | 255, 0, 255, /* perm colors 24: magenta 0xff00ff - */ | { } 85 | 00, 153, 255, /* perm colors 25: sky 0x1e90ff 0x0099ff */ | { } 86 | 153, 51, 255, /* perm colors 26: purple 0x9b30ff 0x9933ff */ | { } 87 | 0, 255, 0, /* SS colors 27: helix, green 0x00ff00 - */ | { } 88 | 255, 204, 0, /* SS colors 28: strand, gold 0xffa500 0xffcc00 */ | { } 89 | 255, 102, 0, /* SS colors 29: turn, orange 0xff4500 0xff6600 */ | { } 90 | 0, 255, 255, /* SS colors 30: coil, cyan ox00ffff - */ | { } 91 | 255, 255, 0, /* highlight colors 31: yellow 0xffff00 - */ | { } 92 | 0, 0, 0 /* background colors 32: black 0x000000 - */ | { 93 | }; | } pgppop.c: In function ‘DDV_WWW_get_CDS_minus’: pgppop.c:329:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable] 329 | Boolean bGiForProductOk=FALSE; | ^~~~~~~~~~~~~~~ pgppop.c:327:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable] 327 | numivals2=0; | ^~~~~~~~~ pgppop.c: In function ‘DDV_WWW_get_CDS_plus’: pgppop.c:451:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable] 451 | Boolean bGiForProductOk=FALSE; | ^~~~~~~~~~~~~~~ pgppop.c: In function ‘DDV_DisplayTopScale’: pgppop.c:1300:7: warning: unused variable ‘szBlank’ [-Wunused-variable] 1300 | Char szBlank[TABLE_LEFT_MARGIN+5]={""}; | ^~~~~~~ pgppop.c: In function ‘DDV_GetBLASTCompLine_1’: pgppop.c:1736:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1736 | if (matrix[s][q]>0){ | ^ pgppop.c:1736:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1736 | if (matrix[s][q]>0){ | ^ pgppop.c: In function ‘DDV_DisplayDefaultAlign’: pgppop.c:3169:13: warning: unused variable ‘sabp’ [-Wunused-variable] 3169 | SABlockPtr sabp=NULL;/*indexed SeqAlign*/ | ^~~~ pgppop.c: In function ‘DDV_ShowSeqAlign’: pgppop.c:3512:10: warning: unused variable ‘szPopSetAuth’ [-Wunused-variable] 3512 | Char szPopSetAuth[INFO_SIZE+1]={""}; | ^~~~~~~~~~~~ pgppop.c:3510:10: warning: unused variable ‘szPopSetName’ [-Wunused-variable] 3510 | Char szPopSetName[INFO_SIZE+1]={""};/*article title of the Pop-Set*/ | ^~~~~~~~~~~~ pgppop.c: In function ‘DDV_PrintPopSetSummary’: pgppop.c:3683:9: warning: variable ‘bPairwise’ set but not used [-Wunused-but-set-variable] 3683 | Boolean bPairwise=TRUE,bPrintTax,bPrintCom; | ^~~~~~~~~ In file included from ../include/sqnutils.h:51, from pgppop.c:49: pgppop.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/ddvcreate.h:143, from pgppop.c:54: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ pgppop.c:2664:13: warning: ‘DDV_PrintFastaGappedSequence’ defined but not used [-Wunused-function] 2664 | static void DDV_PrintFastaGappedSequence(CharPtr szSequence,FILE *fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pgppop.c:2617:13: warning: ‘DDV_GetGappedSequence’ defined but not used [-Wunused-function] 2617 | static void DDV_GetGappedSequence(SegmentPtr segp,CharPtr szSequence, | ^~~~~~~~~~~~~~~~~~~~~ pgppop.c:1841:13: warning: ‘DDV_HideMaskedLetters’ defined but not used [-Wunused-function] 1841 | static void DDV_HideMaskedLetters(CharPtr szSeqMaster,ParaGPtr pgp,ValNodePtr mask) | ^~~~~~~~~~~~~~~~~~~~~ pgppop.c:314:13: warning: ‘DDV_WWW_get_CDS_minus’ defined but not used [-Wunused-function] 314 | static void DDV_WWW_get_CDS_minus(SeqMgrFeatContextPtr context,Int4 start, | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from pgppop.c:51: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ pgppop.c: In function ‘DDV_GetPubValues’: pgppop.c:2873:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2873 | sprintf(szBuf,"%d",year); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from pgppop.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pgppop.c: In function ‘DDV_PopDisplay2’: pgppop.c:998:22: warning: ‘pgp2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 998 | pgp2->StopLetter=pgp2->StartLetter+AbsLengthAli-1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pgppop.c:1004:14: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1004 | vnp->next=NULL; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF samutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/samutil.h:230, from samutil.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ samutil.c: In function ‘SAM_AlignIdComp’: samutil.c:796:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 796 | if ((a == NULL) || (b == NULL)) | ^~ samutil.c:799:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 799 | choice = a->choice; | ^~~~~~ samutil.c: In function ‘SAM_AlignIdDup’: samutil.c:852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 852 | if (oldid == NULL) | ^~ samutil.c:855:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 855 | newid = ValNodeNew(NULL); | ^~~~~ samutil.c: In function ‘DDE_FreeStack’: samutil.c:1556:11: warning: operation on ‘Index’ may be undefined [-Wsequence-point] 1556 | Index = ++Index % DDE_STACK_SIZE; samutil.c: In function ‘DDE_Add’: samutil.c:1611:22: warning: operation on ‘pStack->StackMin’ may be undefined [-Wsequence-point] 1611 | pStack->StackMin = ++pStack->StackMin % DDE_STACK_SIZE; samutil.c:1622:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point] 1622 | pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE; samutil.c: In function ‘DDE_Prev’: samutil.c:1686:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point] 1686 | pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE; samutil.c: In function ‘DDE_Next’: samutil.c:1717:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point] 1717 | pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE; samutil.c: In function ‘DDE_ShowRow’: samutil.c:1984:26: warning: variable ‘NumRows’ set but not used [-Wunused-but-set-variable] 1984 | Int4 i, NumRows, HiRow, LowRow, tmp1, tmp2; | ^~~~~~~ samutil.c: In function ‘DDE_AddGapToEndOfAllRows’: samutil.c:3106:41: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 3106 | ValNodePtr ptxtList, last_vnp, vnp; | ^~~ samutil.c: In function ‘DDE_RightAddNode’: samutil.c:3707:33: warning: variable ‘new_vnp’ set but not used [-Wunused-but-set-variable] 3707 | ValNodePtr vnp, next_vnp, new_vnp; | ^~~~~~~ samutil.c: In function ‘DDE_LeftMergeAndAddNodeList’: samutil.c:3757:24: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable] 3757 | Boolean RetVal1, RetVal2, IsLeftAlignedGap, NodeDeleted; | ^~~~~~~ samutil.c: In function ‘DDE_RightMergeAndAddNodeList’: samutil.c:3813:38: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable] 3813 | Boolean RetVal=FALSE, RetVal1, RetVal2, HeadChanged; | ^~~~~~~ samutil.c: In function ‘DDE_ShiftRightBoundaryLeft1’: samutil.c:4592:41: warning: variable ‘Index’ set but not used [-Wunused-but-set-variable] 4592 | Int4 NumBlocks, i, NumRows, Index, BlockCount=0; | ^~~~~ samutil.c: In function ‘DDE_CreateArraysForDenseSeg’: samutil.c:5028:22: warning: variable ‘NumSegs’ set but not used [-Wunused-but-set-variable] 5028 | Int4 NumRows, NumSegs, i, StartIndex, StopIndex, ArrayIndex=0; | ^~~~~~~ samutil.c: In function ‘DDE_GetLastVNP’: samutil.c:3143:9: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3143 | return(last_vnp); | ^ samutil.c: In function ‘DDE_GetNumResidues’: samutil.c:3166:13: warning: ‘to’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3166 | return((to-from) + 1); | ~~~^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcolor.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvcolor.c:160: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvcolor.c: In function ‘DDV_GetColor’: ddvcolor.c:1422:10: warning: unused variable ‘retval’ [-Wunused-variable] 1422 | Int4 retval = 0; | ^~~~~~ In file included from ../include/samutil.h:234, from ddvcolor.c:165: ddvcolor.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/viewmgr.h:111, from viewmgr.c:165: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from viewmgr.c:167: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from viewmgr.c:168: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ viewmgr.c:683:13: warning: ‘ViewMgr_Swap’ defined but not used [-Wunused-function] 683 | static void ViewMgr_Swap(SeqAlign *salp1, SeqAlign *salp2) | ^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcreate.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ddvcreate.h:142, from ddvcreate.c:245: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvcreate.c:290:2: warning: missing braces around initializer [-Wmissing-braces] 290 | { | ^ 291 | /* Red Grn Blue Color ColorID Old Hex New Hex */ 292 | 255, 255, 255, /* default 0 0xffffff - */ | { } 293 | 255, 0, 153, /* hotpink 1 0xff1493 0xff0099 */ | { } 294 | 255, 0, 255, /* magenta 2 0xff00ff - */ | { } 295 | 153, 51, 255, /* purple 3 0x9b30ff 0x9933ff */ | { } 296 | 0, 0, 255, /* blue 4 0x0000ff - */ | { } 297 | 00, 153, 255, /* sky 5 0x1e90ff 0x0099ff */ | { } 298 | 0, 255, 255, /* cyan 6 0x00ffff - */ | { } 299 | 0, 255, 153, /* sea 7 0x00ff8f 0x00ff99 */ | { } 300 | 0, 192, 0, /* green 8 0x00ff00 - */ | { } 301 | 255, 255, 0, /* yellow 9 0xffff00 - */ | { } 302 | 255, 204, 0, /* gold 10 0xffa500 0xffcc00 */ | { } 303 | 255, 102, 0, /* orange 11 0xff4500 0xff6600 */ | { } 304 | 255, 0, 0, /* red 12 0xff0000 - */ | { } 305 | 255, 153, 153, /* pink 13 0xff7256 0xff9999 */ | { } 306 | 255, 204, 204, /* pinktint 14 0xffaeb9 0xffcccc */ | { } 307 | 255, 255, 255, /* white 15 0xffffff -*/ | { } 308 | 0, 0, 0, /* black 16 0x000000 - */ | { } 309 | 204, 204, 255, /* bluetint 17 0xb0e2ff - 0xccccff*/ | { } 310 | 153, 255, 153, /* greentint 18 0x9aff9a - 0x99ff99 */ | { } 311 | 255, 255, 153, /* yellowtint 19 0xffec8b - 0xffff99 */ | { } 312 | 102, 102, 102, /* gray 20 0x7d7d7d 0x666666 */ | { } 313 | 153, 102, 51, /* brown 21 0x8b5742 01x996633 */ | { } 314 | 255, 0, 0, /* perm colors 22: red 0xff0000 - */ | { } 315 | 0, 255, 0, /* perm colors 23: green 0x00ff00 - */ | { } 316 | 255, 0, 255, /* perm colors 24: magenta 0xff00ff - */ | { } 317 | 00, 153, 255, /* perm colors 25: sky 0x1e90ff 0x0099ff */ | { } 318 | 153, 51, 255, /* perm colors 26: purple 0x9b30ff 0x9933ff */ | { } 319 | 0, 255, 0, /* SS colors 27: helix, green 0x00ff00 - */ | { } 320 | 255, 204, 0, /* SS colors 28: strand, gold 0xffa500 0xffcc00 */ | { } 321 | 255, 102, 0, /* SS colors 29: turn, orange 0xff4500 0xff6600 */ | { } 322 | 0, 255, 255, /* SS colors 30: coil, cyan ox00ffff - */ | { } 323 | 255, 255, 0, /* highlight colors 31: yellow 0xffff00 - */ | { } 324 | 0, 0, 0 /* background colors 32: black 0x000000 - */ | { 325 | }; | } ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_1’: ddvcreate.c:493:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 493 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ^~~~ ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_2’: ddvcreate.c:529:21: warning: variable ‘more’ set but not used [-Wunused-but-set-variable] 529 | Boolean more; | ^~~~ ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_EX2’: ddvcreate.c:779:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 779 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ^~~~ ddvcreate.c:690:21: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 690 | Boolean last; | ^~~~ ddvcreate.c:686:21: warning: variable ‘PopulateTo’ set but not used [-Wunused-but-set-variable] 686 | Int4 PopulateTo; | ^~~~~~~~~~ ddvcreate.c: In function ‘DDV_DisplayNewBLAST’: ddvcreate.c:1942:16: warning: variable ‘what’ set but not used [-Wunused-but-set-variable] 1942 | Uint1 what; | ^~~~ ddvcreate.c: In function ‘UDV_BigEncodeIdxFeat4’: ddvcreate.c:2878:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2878 | return *((Uint8Ptr) index_g); | ~^~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/ddvcreate.h:143, from ddvcreate.c:245: ddvcreate.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ddvcreate.c:249: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ddvcreate.c:2362:16: warning: ‘DDV_DisplayBlastSAP’ defined but not used [-Wunused-function] 2362 | static Boolean DDV_DisplayBlastSAP(SeqAlignPtr sap, ValNodePtr mask, | ^~~~~~~~~~~~~~~~~~~ ddvcreate.c:525:16: warning: ‘DDV_CreateDisplayFromIndex_2’ defined but not used [-Wunused-function] 525 | static Boolean DDV_CreateDisplayFromIndex_2(SeqAlignPtr sap, MsaParaGPopListPtr mpplp, Int2 LineSize) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c: In function ‘UAMgrIntUAMsg’: ddvcreate.c:1201:60: warning: ‘halfBspLengthSeqR’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1201 | UABitDescrInit(&uamp->ubd[1],halfBspLengthSeqL,MaxLength-halfBspLengthSeqR-1,TRUE); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ ddvcreate.c:1158:24: note: ‘halfBspLengthSeqR’ was declared here 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle; | ^~~~~~~~~~~~~~~~~ ddvcreate.c:1141:11: warning: ‘halfBspLengthSeqL’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1141 | ubd->from=Start; | ~~~~~~~~~^~~~~~ ddvcreate.c:1158:6: note: ‘halfBspLengthSeqL’ was declared here 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle; | ^~~~~~~~~~~~~~~~~ ddvcreate.c:1141:11: warning: ‘stop_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1141 | ubd->from=Start; | ~~~~~~~~~^~~~~~ ddvcreate.c:1158:73: note: ‘stop_middle’ was declared here 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle; | ^~~~~~~~~~~ ddvcreate.c:1195:4: warning: ‘start_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1195 | UABitDescrInit(&uamp->ubd[0],0,start_middle-1,TRUE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c:1158:60: note: ‘start_middle’ was declared here 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle; | ^~~~~~~~~~~~ ddvcreate.c: In function ‘DDV_PopulateDisplayForDisc’: ddvcreate.c:1048:16: warning: ‘vnp_para’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1048 | vnp_list[n-1]=vnp_para; | ~~~~~~~~~~~~~^~~~~~~~~ ddvcreate.c: In function ‘UABuildDescriptor2’: ddvcreate.c:1541:13: warning: ‘stopcopy’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1541 | *TotLength+=(stopcopy-startcopy);/*to be used for the display coord. system*/ | ^~ ddvcreate.c: In function ‘DDV_DumpSAPInAFile’: ddvcreate.c:1798:2: warning: ‘matrix’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1798 | DDV_AffichageParaG(mpplp,0,0,mpplp->LengthAli-1,mpplp->LengthAli,0,option, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1799 | LineSize,hFile,byteSpp,matrix,gclr,NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c: In function ‘DDV_ReadSeqBin’: ddvcreate.c:2593:9: warning: ‘btr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2593 | return btr; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jsavlt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/jsavlt.h:4, from jsavlt.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF needleman.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/needleman.h:40, from needleman.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ needleman.c: In function ‘NeedlemanWunschQuadraticByLoc’: needleman.c:281:24: warning: variable ‘bestDbPos’ set but not used [-Wunused-but-set-variable] 281 | Int4 bestQueryPos, bestDbPos; /*position ending best score in | ^~~~~~~~~ needleman.c:281:10: warning: variable ‘bestQueryPos’ set but not used [-Wunused-but-set-variable] 281 | Int4 bestQueryPos, bestDbPos; /*position ending best score in | ^~~~~~~~~~~~ needleman.c: In function ‘FetchSequenceByLoc’: needleman.c:243:12: warning: ‘query’ may be used uninitialized in this function [-Wmaybe-uninitialized] 243 | return query; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF txalign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ txalign.c: In function ‘addLinkoutForDefline’: txalign.c:188:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable] 188 | Boolean hasLinkout=FALSE; | ^~~~~~~~~~ txalign.c: In function ‘addLinkoutForBioseq’: txalign.c:256:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable] 256 | Boolean hasLinkout=FALSE; | ^~~~~~~~~~ txalign.c: In function ‘DrawTextToBuffer’: txalign.c:1254:88: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 1254 | snprintf(checkboxBuf, 200, "", sip->data.intvalue, query_number_glb); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld txalign.c: In function ‘load_align_sum_for_StdSeg’: txalign.c:2230:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2230 | if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) { | ^~~ txalign.c: In function ‘ShowAlignNodeText2Ex’: txalign.c:3030:13: warning: variable ‘is_end’ set but not used [-Wunused-but-set-variable] 3030 | Boolean is_end, strip_semicolon=TRUE; | ^~~~~~ txalign.c: In function ‘Tx_PrintDefLine’: txalign.c:4079:7: warning: unused variable ‘seqid_length’ [-Wunused-variable] 4079 | Int4 seqid_length = 0, total_length = 0; | ^~~~~~~~~~~~ txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath’: txalign.c:4494:39: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 4494 | } else if (bestid != NULL && !(options & TXALIGN_NO_DUMPGNL) || (options & TXALIGN_NO_ENTREZ)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4498:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 4498 | if (bsp = BioseqLockById(bestid)) { | ^~~ txalign.c:4200:10: warning: unused variable ‘ColumnDistance’ [-Wunused-variable] 4200 | Int2 ColumnDistance=2, extraSpace=0, extraSpace2=0, strLen=0, maxEvalWidth=5, maxNWidth=2; | ^~~~~~~~~~~~~~ txalign.c:4192:43: warning: unused variable ‘sip_list’ [-Wunused-variable] 4192 | SeqIdPtr bestid, gi_list, subject_id, sip_list=NULL, last_id; | ^~~~~~~~ txalign.c:4188:17: warning: variable ‘ptr_start’ set but not used [-Wunused-but-set-variable] 4188 | Char *ptr, *ptr_start, *eval_buff_ptr, *bit_score_buff_ptr; | ^~~~~~~~~ txalign.c: In function ‘FormatScoreFromSeqAlignEx’: txalign.c:4817:25: warning: unused variable ‘t_adj’ [-Wunused-variable] 4817 | Int4 m_adj = 0, t_adj = 0; | ^~~~~ txalign.c:4816:29: warning: unused variable ‘last_t_to’ [-Wunused-variable] 4816 | Int4 last_m_to = 0, last_t_to = 0; | ^~~~~~~~~ txalign.c: In function ‘FSFPrintOneDefline’: txalign.c:4925:14: warning: variable ‘seqid_len’ set but not used [-Wunused-but-set-variable] 4925 | Int4 gi, seqid_len = 0; | ^~~~~~~~~ txalign.c: In function ‘FormatScoreFunc’: txalign.c:5142:13: warning: variable ‘allocated’ set but not used [-Wunused-but-set-variable] 5142 | Boolean allocated, first; | ^~~~~~~~~ txalign.c: In function ‘OOFShowSingleAlignment’: txalign.c:5808:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 5808 | else if(matrix[line1[line_index]][line2[line_index]] > 0) | ~~~~~^~~~~~~~~~~~ txalign.c:5808:52: warning: array subscript has type ‘char’ [-Wchar-subscripts] 5808 | else if(matrix[line1[line_index]][line2[line_index]] > 0) | ~~~~~^~~~~~~~~~~~ txalign.c:5575:13: warning: variable ‘lines’ set but not used [-Wunused-but-set-variable] 5575 | Int4 i, lines, k, shift_info = 0; | ^~~~~ txalign.c: In function ‘OOFDisplayTraceBack1’: txalign.c:6063:33: warning: unused variable ‘st’ [-Wunused-variable] 6063 | tmp[10] = " ", *st; | ^~ txalign.c:6063:9: warning: unused variable ‘tmp’ [-Wunused-variable] 6063 | tmp[10] = " ", *st; | ^~~ txalign.c: In function ‘OOFDisplayTraceBack2’: txalign.c:6137:33: warning: unused variable ‘st’ [-Wunused-variable] 6137 | tmp[10] = " ", *st; | ^~ txalign.c: In function ‘FDGetTaxNamesFromBioseq’: txalign.c:6239:21: warning: variable ‘bdsp’ set but not used [-Wunused-but-set-variable] 6239 | BlastDefLinePtr bdsp; | ^~~~ txalign.c: At top level: txalign.c:310:19: warning: ‘ProcessTextInsertion’ declared ‘static’ but never defined [-Wunused-function] 310 | static ValNodePtr ProcessTextInsertion PROTO((AlignNodePtr anp, Int4 m_left, Int4 m_right, BioseqPtr bsp, Int4 line_len, Int1 frame)); | ^~~~~~~~~~~~~~~~~~~~ txalign.c:6137:33: warning: ‘st’ defined but not used [-Wunused-variable] 6137 | tmp[10] = " ", *st; | ^~ txalign.c:6063:9: warning: ‘tmp’ defined but not used [-Wunused-variable] 6063 | tmp[10] = " ", *st; | ^~~ txalign.c:6063:33: warning: ‘st’ defined but not used [-Wunused-variable] 6063 | tmp[10] = " ", *st; | ^~ txalign.c:2915:1: warning: ‘get_seq_id’ defined but not used [-Wunused-function] 2915 | get_seq_id(SeqAlignPtr sap, Int2 index) | ^~~~~~~~~~ txalign.c:1820:16: warning: ‘has_hit_in_region’ defined but not used [-Wunused-function] 1820 | static Boolean has_hit_in_region(Uint1Ptr all_frame) | ^~~~~~~~~~~~~~~~~ txalign.c:112:16: warning: ‘getNameInitials’ defined but not used [-Wunused-function] 112 | static CharPtr getNameInitials(CharPtr name){ | ^~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: txalign.c: In function ‘DrawTextToBuffer’: ../include/ncbistr.h:331:19: warning: ‘HTML_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ txalign.c:1094:10: note: ‘HTML_buffer’ was declared here 1094 | CharPtr HTML_buffer; | ^~~~~~~~~~~ txalign.c: In function ‘OOFShowSingleAlignment.constprop’: txalign.c:73:17: warning: ‘pro_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 73 | #define fprintf tx_fprintf | ^~~~~~~~~~ txalign.c:5571:48: note: ‘pro_line_start’ was declared here 5571 | Int4 dna_index, pro_index, dna_line_start, pro_line_start; | ^~~~~~~~~~~~~~ txalign.c:73:17: warning: ‘dna_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 73 | #define fprintf tx_fprintf | ^~~~~~~~~~ txalign.c:5571:32: note: ‘dna_line_start’ was declared here 5571 | Int4 dna_index, pro_index, dna_line_start, pro_line_start; | ^~~~~~~~~~~~~~ txalign.c: In function ‘find_score_in_align’: txalign.c:2080:35: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2080 | stdaa_res = SeqMapTableConvert(smtp, t_res); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:1980:20: note: ‘smtp’ was declared here 1980 | SeqMapTablePtr smtp; | ^~~~ txalign.c:1945:13: warning: ‘t_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1945 | SeqPortFree(t_spp); | ^~~~~~~~~~~~~~~~~~ txalign.c:1876:23: note: ‘t_spp’ was declared here 1876 | SeqPortPtr m_spp, t_spp; | ^~~~~ txalign.c:1942:11: warning: ‘m_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1942 | if(m_spp == NULL) | ^ txalign.c:1876:16: note: ‘m_spp’ was declared here 1876 | SeqPortPtr m_spp, t_spp; | ^~~~~ txalign.c: In function ‘ShowAlignNodeText2Ex.constprop’: txalign.c:1753:28: warning: ‘m_len’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1753 | n = MAX(0, (master_len-1 - m_stop)/3 -1); | ^ txalign.c:3025:10: note: ‘m_len’ was declared here 3025 | Int4 m_len; /*length of the master sequence*/ | ^~~~~ txalign.c: In function ‘ShowTextAlignFromAnnot3’: txalign.c:949:12: warning: ‘retval’ may be used uninitialized in this function [-Wmaybe-uninitialized] 949 | return retval; | ^~~~~~ txalign.c: In function ‘FormatScoreFunc’: txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=] 4747 | sprintf(buffer, "%d", frame); | ^~ txalign.c:4747:20: note: directive argument in the range [-32768, 32767] 4747 | sprintf(buffer, "%d", frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=] 4743 | sprintf(buffer, "+%d", frame); | ^~ txalign.c:4743:20: note: directive argument in the range [-32768, 32767] 4743 | sprintf(buffer, "+%d", frame); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=] 4747 | sprintf(buffer, "%d", frame); | ^~ txalign.c:4747:20: note: directive argument in the range [-32768, 32767] 4747 | sprintf(buffer, "%d", frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=] 4743 | sprintf(buffer, "+%d", frame); | ^~ txalign.c:4743:20: note: directive argument in the range [-32768, 32767] 4743 | sprintf(buffer, "+%d", frame); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=] 4747 | sprintf(buffer, "%d", frame); | ^~ txalign.c:4747:20: note: directive argument in the range [-32768, 32767] 4747 | sprintf(buffer, "%d", frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=] 4743 | sprintf(buffer, "+%d", frame); | ^~ txalign.c:4743:20: note: directive argument in the range [-32768, 32767] 4743 | sprintf(buffer, "+%d", frame); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=] 4747 | sprintf(buffer, "%d", frame); | ^~ txalign.c:4747:20: note: directive argument in the range [-32768, 32767] 4747 | sprintf(buffer, "%d", frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=] 4743 | sprintf(buffer, "+%d", frame); | ^~ txalign.c:4743:20: note: directive argument in the range [-32768, 32767] 4743 | sprintf(buffer, "+%d", frame); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath.part.0’: txalign.c:4647:50: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=] 4647 | sprintf(buffer1, "%s", id_buffer, bit_score_buff_ptr); | ^~ ~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 2074 bytes into a destination of size 2049 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4645:51: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2037 [-Wformat-overflow=] 4645 | sprintf(buffer1, " %s", id_buffer, bit_score_buff_ptr); | ^~ ~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 18 and 2074 bytes into a destination of size 2049 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fdlobj.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from fdlobj.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ fdlobj.c: In function ‘BlastDefLineSetAsnRead’: fdlobj.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 69 | AsnReadFunc func; | ^~~~ fdlobj.c: In function ‘BlastDefLineAsnRead’: fdlobj.c:202:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 202 | AsnReadFunc func; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/alignmgr2.h:110, from alignmgr2.c:242: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ alignmgr2.c: In function ‘AlnMgr2IndexSingleDenseSegSA’: alignmgr2.c:885:13: warning: statement with no effect [-Wunused-value] 885 | for (j; jnumseg && next == -1; j++) | ^~~ alignmgr2.c: In function ‘AlnMgr2CopySeg’: alignmgr2.c:2984:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2984 | if (ldelta = ABS(s->beg - beg)) { | ^~~~~~ alignmgr2.c: In function ‘AlnMgr2AddInNewPairwiseSA’: alignmgr2.c:3221:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3221 | while (a = AlnMgr2GetNextSeqPiece(a)) { | ^ alignmgr2.c:3223:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3223 | while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) { | ^ alignmgr2.c:3233:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3233 | while (A = AlnMgr2GetNextSeqPiece(A)) { | ^ alignmgr2.c:3237:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3237 | while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {}; | ^ alignmgr2.c: In function ‘AlnMgr2SetUnaln’: alignmgr2.c:5410:22: warning: variable ‘dsp’ set but not used [-Wunused-but-set-variable] 5410 | DenseSegPtr dsp; | ^~~ alignmgr2.c: In function ‘AlnMgr2PrintSeqAlign’: alignmgr2.c:5623:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 5623 | while (more = AlnMgr2GetNextAlnBit(sap, amp)) | ^~~~ alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’: alignmgr2.c:5719:21: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 5719 | Boolean found; | ^~~~~ alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’: alignmgr2.c:6085:22: warning: variable ‘saip’ set but not used [-Wunused-but-set-variable] 6085 | SAIndex2Ptr saip; | ^~~~ alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’: alignmgr2.c:6331:7: warning: statement with no effect [-Wunused-value] 6331 | for (i; isegnum; i++) | ^~~ alignmgr2.c: In function ‘AlnMgr2GetAlnLength’: alignmgr2.c:6774:20: warning: comparison between pointer and zero character constant [-Wpointer-compare] 6774 | if (saip->unaln == FALSE || fill_in == FALSE) | ^~ alignmgr2.c:6774:8: note: did you mean to dereference the pointer? 6774 | if (saip->unaln == FALSE || fill_in == FALSE) | ^ alignmgr2.c: In function ‘AlnMgr2ComputeScoreForSeqAlign’: alignmgr2.c:8341:17: warning: variable ‘numseqs’ set but not used [-Wunused-but-set-variable] 8341 | Int4 numseqs; | ^~~~~~~ alignmgr2.c:8339:17: warning: variable ‘mismatch’ set but not used [-Wunused-but-set-variable] 8339 | Int4 mismatch; | ^~~~~~~~ alignmgr2.c:8338:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 8338 | Int4 len; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from alignmgr2.c:242: alignmgr2.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ alignmgr2.c:3557:13: warning: ‘AlnMgr2AddInNewSA’ defined but not used [-Wunused-function] 3557 | static void AlnMgr2AddInNewSA(SeqAlignPtr parent, SeqAlignPtr sap) | ^~~~~~~~~~~~~~~~~ alignmgr2.c:2368:18: warning: ‘AlnMgr2GetEdgeList’ defined but not used [-Wunused-function] 2368 | static AMEdgePtr AlnMgr2GetEdgeList(Int4 vertexnum, AMEdgePtr edge_head, AMEdgePtr already_used) | ^~~~~~~~~~~~~~~~~~ alignmgr2.c:2140:13: warning: ‘AlnMgr2SortVerticesByNumEdges’ defined but not used [-Wunused-function] 2140 | static void AlnMgr2SortVerticesByNumEdges(AMVertexPtr PNTR vertexarray, Int4 numvertices) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:1061:13: warning: ‘AlnMgr2UnpackSeqAlignChain’ defined but not used [-Wunused-function] 1061 | static void AlnMgr2UnpackSeqAlignChain(SeqAlignPtr sap) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2IndexLite’: alignmgr2.c:1001:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1001 | sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:968:17: note: ‘sap_segs_prev’ was declared here 968 | SeqAlignPtr sap_segs_prev; | ^~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’: alignmgr2.c:6122:54: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6122 | *from = dsp->starts[dsp->dim*i+row-1]+dsp->lens[i]; | ~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetMaxUnalignedLength’: alignmgr2.c:7068:23: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7068 | for (i=0; isrdp[row]->numunaln && !found; i++) | ~~~~^~~~~~ alignmgr2.c:7077:19: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7077 | for (i=0; idim; i++) | ~~~^~~~~ alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’: alignmgr2.c:6353:16: warning: ‘iip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6353 | iip->strand = strand; | ~~~~~~~~~~~~^~~~~~~~ alignmgr2.c:6182:19: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6182 | trans = saip->srdp[saip->anchor-1]->sect; | ~~~~^~~~~~ alignmgr2.c:6337:48: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6337 | iip->starts[k] = dsp->starts[dsp->dim*i + interrupt->row-1]; | ~~~^~~~~ alignmgr2.c: In function ‘AlnMgr2GetNthSeqRangeInSA’: alignmgr2.c:6478:15: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6478 | srdp = saip->srdp[n-1]; | ~~~~^~~~~~ alignmgr2.c:6489:57: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6489 | beg = dsp->starts[srdp->sect[srdp->numsect-1]*(dsp->dim) + n-1]; | ~~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNthRowSpanInSA’: alignmgr2.c:6550:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6550 | *start = saip->aligncoords[i]; | ~~~~^~~~~~~~~~~~~ alignmgr2.c:6558:41: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6558 | *stop = saip->aligncoords[i] + dsp->lens[srdp->sect[srdp->numsect-1]] - 1; | ~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetAlnLength’: alignmgr2.c:6789:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6789 | len += AlnMgr2GetMaxUnalignedLength(salp, i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:6780:24: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6780 | lastseg = saip->srdp[saip->anchor-1]->sect[saip->srdp[saip->anchor-1]->numsect-1]; | ~~~~^~~~~~ alignmgr2.c:6788:20: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6788 | len += dsp->lens[i]; | ~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’: alignmgr2.c:6025:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6025 | if (saip->anchor <= 0) | ~~~~^~~~~~~~ alignmgr2.c:6017:29: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6017 | amp->from_row = dsp->starts[trans[stop_sect]*dsp->dim+amp->row_num-1] + endoffset; | ~~~^~~~~~~~ alignmgr2.c: In function ‘AlnMgr2IsSAPDiscAli’: alignmgr2.c:6813:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6813 | if (saip->numunaln > 0) | ~~~~^~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNumAlnBlocks’: alignmgr2.c:6836:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6836 | if (saip->numunaln >= 0) | ~~~~^~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNthBlockRange’: alignmgr2.c:6870:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6870 | *start = saip->aligncoords[saip->unaln[n-1]+1]; | ~~~~^~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNthUnalignedForNthRow’: alignmgr2.c:6911:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6911 | if (saip->numunaln == -1 || unaligned > saip->numunaln) | ~~~~^~~~~~~~~~ alignmgr2.c:6936:65: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6936 | *start = dsp->starts[(saip->srdp[row-1]->unaligned[i])*dsp->dim+row-1] + dsp->lens[(saip->srdp[row-1]->unaligned[i])]; | ~~~^~~~~ alignmgr2.c: In function ‘AlnMgr2GetNextLengthBit’: alignmgr2.c:7019:26: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7019 | maxseg = saip->unaln[*seg]; | ~~~~^~~~~~~ alignmgr2.c:7024:26: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7024 | (*len) += dsp->lens[i]; | ~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNumSegsInRange’: alignmgr2.c:7185:62: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7185 | start = binary_search_on_uint4_list(aligncoords, from, dsp->numseg); | ~~~^~~~~~~~ alignmgr2.c:6045:15: warning: ‘aligncoords’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6045 | if (list[mid + 1] <= pos) | ^ alignmgr2.c:7150:21: note: ‘aligncoords’ was declared here 7150 | Uint4Ptr aligncoords; | ^~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlign’: alignmgr2.c:7652:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7652 | if (saip->anchor > 0) | ~~~~^~~~~~~~ alignmgr2.c:7649:51: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7649 | offset = pos - dsp->starts[(srdp->sect[L])*(dsp->dim)+row-1]; | ~~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseq’: alignmgr2.c:7715:11: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7715 | sect = binary_search_on_uint4_list(saip->aligncoords, pos, saip->numseg); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:7730:36: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7730 | return (dsp->starts[sect*(dsp->dim)+row-1] + dsp->lens[sect] - 1 - offset); | ~~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetSubAlign’: alignmgr2.c:8036:13: warning: ‘sap_real’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8036 | if ((a = AlnMgr2FindAnchor(sap_real)) > 0) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2FillInUnaligned’: alignmgr2.c:9869:12: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9869 | curr = curr + 1 + offset; | ~~~~~^~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlignStdSeg’: alignmgr2.c:10175:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10175 | stop1 = SeqLocStop(slp_longest); | ^~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseqStdSeg’: alignmgr2.c:10209:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10209 | stop1 = SeqLocStop(slp_longest); | ^~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetAlnLengthStdSeg’: alignmgr2.c:10236:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10236 | return (SeqLocLen(slp_longest)); | ~^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alnread.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acerdapi.c acerdapi.c: In function ‘DoesSeqStringMatchBsp’: acerdapi.c:201:30: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable] 201 | Int4 ctr, pos = 0, i, len, seq_len; | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from acerdapi.c:40: acerdapi.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aceread.c aceread.c:3308:12: warning: ‘s_GetUngappedPosition’ defined but not used [-Wunused-function] 3308 | static int s_GetUngappedPosition (int gapped_pos, char *seq) | ^~~~~~~~~~~~~~~~~~~~~ aceread.c:276:13: warning: ‘AdjustGapInfoFor3Trim’ defined but not used [-Wunused-function] 276 | static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len) | ^~~~~~~~~~~~~~~~~~~~~ aceread.c:247:13: warning: ‘AdjustGapInfoFor5Trim’ defined but not used [-Wunused-function] 247 | static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim) | ^~~~~~~~~~~~~~~~~~~~~ aceread.c:134:12: warning: ‘s_IsGapChar’ defined but not used [-Wunused-function] 134 | static int s_IsGapChar (char ch, char *gap_chars) | ^~~~~~~~~~~ aceread.c: In function ‘s_ReadContig’: aceread.c:1477:12: warning: ‘linestring’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1477 | if (linestring != NULL) free (linestring); | ^ rm -f libncbiobj.a ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiobj.a ../lib ranlib ../lib/libncbiobj.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdentrez.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cdentrez.c:283:23: warning: ‘CdEntMlSumGet’ declared ‘static’ but never defined [-Wunused-function] 283 | static DocSumPtr NEAR CdEntMlSumGet PROTO((Int4 uid)); | ^~~~~~~~~~~~~ cdentrez.c:310:23: warning: ‘CdEntSeqSumGet’ declared ‘static’ but never defined [-Wunused-function] 310 | static DocSumPtr NEAR CdEntSeqSumGet PROTO((Int4 uid, DocType type)); | ^~~~~~~~~~~~~~ cdentrez.c:2935:23: warning: ‘MedSumAsnRead’ defined but not used [-Wunused-function] 2935 | static DocSumPtr NEAR MedSumAsnRead (AsnIoPtr aip, DocUid uid) | ^~~~~~~~~~~~~ cdentrez.c:1616:26: warning: ‘FreePostingList’ defined but not used [-Wunused-function] 1616 | static ByteStorePtr NEAR FreePostingList (ByteStorePtr lst) | ^~~~~~~~~~~~~~~ cdentrez.c:307:20: warning: ‘BIOSEQ_id_E’ defined but not used [-Wunused-variable] 307 | static AsnTypePtr BIOSEQ_id_E = NULL; | ^~~~~~~~~~~ cdentrez.c: In function ‘CdEntrezMergeTerm’: cdentrez.c:2675:17: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2675 | *totl = total; | ~~~~~~^~~~~~~ cdentrez.c:2672:17: warning: ‘special’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2672 | *spcl = special; | ~~~~~~^~~~~~~~~ cdentrez.c:2640:5: warning: ‘termpage’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2640 | cd3_CdTermScan (db, fld, termpage, (Int4)0, ScanAndFreeProc); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdentrez.c: In function ‘CdLinkUidList’: cdentrez.c:938:9: warning: ‘count’ may be used uninitialized in this function [-Wmaybe-uninitialized] 938 | return count; | ^~~~~ cdentrez.c: In function ‘CdTermListByTerm’: cdentrez.c:1036:12: warning: ‘first’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1036 | rsult = cd3_CdTermScan(type,field,first,0,TermListTermScanProc); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: In function ‘strncpy’, inlined from ‘FindTermNode’ at cdentrez.c:1813:11, inlined from ‘CdEntTLAddTerm’ at cdentrez.c:617:14, inlined from ‘CdEntTLAddTerm’ at cdentrez.c:600:24: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdentrez.c: In function ‘CdEntTLAddTerm’: cdentrez.c:1895:24: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1895 | if (scanOk && total > 0) { | ~~~~~~~^~~~~~~~~~~~ cdentrez.c:1787:13: note: ‘total’ was declared here 1787 | Int4 total; | ^~~~~ cdentrez.c: In function ‘CdEntrezFindTerm’: cdentrez.c:1123:3: warning: ‘ctp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1123 | CdTermFree(ctp); | ^~~~~~~~~~~~~~~ cdentrez.c: In function ‘CdEntMedlineEntryListGet’: cdentrez.c:2720:6: warning: ‘aip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2720 | cd3_CdDocAsnClose(aip); | ^~~~~~~~~~~~~~~~~~~~~~ cdentrez.c: In function ‘CdSeqSumAsnRead’: cdentrez.c:3424:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3424 | sprintf (cds, " cds%d", (int) proteins); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdromlib.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdromlib.c:73: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdnewlib.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cdnewlib.c:600:27: warning: missing braces around initializer [-Wmissing-braces] 600 | struct CdFInfo _finfo[] = { | ^ 601 | "", 0, 0, | { } 602 | "hca", MAGIC_hca, FORMAT_hca, | { } 603 | "sum", MAGIC_sum, FORMAT_sum, | { } 604 | "lnk", MAGIC_lnk, FORMAT_lnk, | { } 605 | "ofs", MAGIC_ofs, FORMAT_ofs, | { } 606 | "oix", MAGIC_oix, FORMAT_oix, | { } 607 | "trm", MAGIC_trm, FORMAT_trm, | { } 608 | "tix", MAGIC_tix, FORMAT_tix, | { } 609 | "pst", MAGIC_pst, FORMAT_pst, | { } 610 | "inf", MAGIC_inf, FORMAT_inf | { 611 | }; | } cdnewlib.c:614:27: warning: missing braces around initializer [-Wmissing-braces] 614 | struct CdDirInfo _dir[] = { | ^ cdnewlib.c: In function ‘cd3_CdDocAsnOpen’: cdnewlib.c:1327:9: warning: unused variable ‘fdir’ [-Wunused-variable] 1327 | char *fdir = NULL; | ^~~~ cdnewlib.c: In function ‘CdDevice_Init’: cdnewlib.c:2739:6: warning: variable ‘cd_num’ set but not used [-Wunused-but-set-variable] 2739 | int cd_num; | ^~~~~~ At top level: cdnewlib.c:3605:13: warning: ‘Cache_Purge’ defined but not used [-Wunused-function] 3605 | static void Cache_Purge (Cache *cache) | ^~~~~~~~~~~ cdnewlib.c:3592:14: warning: ‘Cache_Peek’ defined but not used [-Wunused-function] 3592 | static void* Cache_Peek (Cache *cache, long id) | ^~~~~~~~~~ cdnewlib.c:3569:12: warning: ‘Cache_Touch’ defined but not used [-Wunused-function] 3569 | static int Cache_Touch (Cache *cache, long id) | ^~~~~~~~~~~ cdnewlib.c:3506:12: warning: ‘Cache_Delete’ defined but not used [-Wunused-function] 3506 | static int Cache_Delete (Cache *cache, long id) | ^~~~~~~~~~~~ cdnewlib.c:638:18: warning: ‘_div’ defined but not used [-Wunused-variable] 638 | static DivInfo * _div; | ^~~~ cdnewlib.c:582:15: warning: ‘_empty_string’ defined but not used [-Wunused-variable] 582 | static char * _empty_string = ""; | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: In function ‘strncat’, inlined from ‘CdDevice_FileBuildPath.part.0.isra’ at cdnewlib.c:2679:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-overflow=] In function ‘strncat’, inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdnewlib.c: In function ‘TrmIndex_Lookup’: cdnewlib.c:2166:12: warning: ‘d’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2166 | for ( ; d <= 0 && mid >0; --mid) | ~~^~~~ cdnewlib.c:2168:27: warning: ‘term’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2168 | if (d==0 && len == (int)strlen(term)) | ^~~~~~~~~~~~ cdnewlib.c:2166:28: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2166 | for ( ; d <= 0 && mid >0; --mid) | ^~~~~ cdnewlib.c: In function ‘UidIndex_Lookup’: cdnewlib.c:1986:20: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1986 | page_num = (uid < *p && mid >0) ? mid-1 : mid; | ^~ cdnewlib.c:1986:42: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1986 | page_num = (uid < *p && mid >0) ? mid-1 : mid; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF casn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from casn.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdconfig.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cdconfig.c:75: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/ncbi.h:58, from cdconfig.c:75: cdconfig.c: In function ‘ChangeMedia’: ../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value] 247 | #define FALSE ((Nlm_Boolean)0) | ^ ../include/ncbifile.h:144:76: note: in expansion of macro ‘FALSE’ 144 | #define EjectCd(sVolume, deviceName, rawDeviceName, mountPoint, mountCmd) FALSE | ^~~~~ cdconfig.c:941:29: note: in expansion of macro ‘EjectCd’ 941 | EjectCd(toBeEjected->entrez_info->volume_label, | ^~~~~~~ ../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value] 247 | #define FALSE ((Nlm_Boolean)0) | ^ ../include/ncbifile.h:145:76: note: in expansion of macro ‘FALSE’ 145 | #define MountCd(sVolume, deviceName, mountPoint, mountCmd) FALSE | ^~~~~ cdconfig.c:960:17: note: in expansion of macro ‘MountCd’ 960 | MountCd(newMedia->entrez_info->volume_label, cdm->device_name, | ^~~~~~~ cdconfig.c: At top level: cdconfig.c:191:17: warning: ‘UnMarkLRUineligible’ declared ‘static’ but never defined [-Wunused-function] 191 | static void UnMarkLRUineligible PROTO((void)); | ^~~~~~~~~~~~~~~~~~~ cdconfig.c: In function ‘EntrezInfoMerge’: cdconfig.c:1257:45: warning: ‘besttype’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1257 | besttype->fields[f].num_terms; | ~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/cdrom.h:9, from objentr.c:102: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objentr.c: In function ‘CdRomAsnLoad’: objentr.c:170:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 170 | if (loaded) | ^~ objentr.c:172:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 172 | loaded = TRUE; | ^~~~~~ objentr.c: In function ‘DocSumAsnRead’: objentr.c:970:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 970 | AsnReadFunc func; | ^~~~ objentr.c:969:12: warning: unused variable ‘isError’ [-Wunused-variable] 969 | Boolean isError = FALSE; | ^~~~~~~ At top level: objentr.c:806:23: warning: ‘EntrezDivInfo_Destruct’ defined but not used [-Wunused-function] 806 | static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div) | ^~~~~~~~~~~~~~~~~~~~~~ objentr.c:771:16: warning: ‘EntrezLinkInfo_AsnWrite’ defined but not used [-Wunused-function] 771 | static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type) | ^~~~~~~~~~~~~~~~~~~~~~~ objentr.c: In function ‘EntrezInfoAsnRead’: objentr.c:392:4: warning: ‘div’ may be used uninitialized in this function [-Wmaybe-uninitialized] 392 | EntrezDivInfo_AsnRead(div++,stream,atp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ objentr.c:763:17: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized] 763 | link->datasize = (int) val.intvalue; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ objentr.c:240:18: note: ‘link’ was declared here 240 | EntrezLinkInfo *link; | ^~~~ objentr.c:704:19: warning: ‘fld’ may be used uninitialized in this function [-Wmaybe-uninitialized] 704 | fld->post_type = (PostType) val.intvalue; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ objentr.c:239:19: note: ‘fld’ was declared here 239 | EntrezFieldInfo *fld; | ^~~ objentr.c:649:18: warning: ‘tinf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 649 | tinf->asntype = (char*) val.ptrvalue; | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ objentr.c:238:18: note: ‘tinf’ was declared here 238 | EntrezTypeInfo *tinf; | ^~~~ objentr.c:856:16: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 856 | div->docs[i++] = val.intvalue; | ~^~ objentr.c:824:7: note: ‘i’ was declared here 824 | int i; | ^ rm -f libncbicdr.a ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbicdr.a ../lib ranlib ../lib/libncbicdr.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibbutns.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibbutns.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibbutns.c: In function ‘Nlm_CheckCallback’: vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 354 | Nlm_ControlTool c; | ^ vibbutns.c: In function ‘Nlm_RadioCallback’: vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 373 | Nlm_ControlTool c; | ^ vibbutns.c: In function ‘Nlm_SetButtonStatus’: vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 694 | Nlm_Int2 val; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibextra.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibextra.c:87: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibextra.c: In function ‘Nlm_RGB2HSL.constprop’: vibextra.c:1219:13: warning: ‘min’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1219 | i++; if ( i > 2 ) i=0; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibfiles.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibfiles.c: In function ‘Nlm_CardToStr’: vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~ vibfiles.c:715:18: note: directive argument in the range [0, 65535] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function ‘Nlm_IntToStr’: vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 725 | sprintf (temp, "%*d", length, intval); | ^~~ vibfiles.c:725:18: note: directive argument in the range [-32768, 32767] 725 | sprintf (temp, "%*d", length, intval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibforms.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibforms.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibgroup.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibgroup.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viblists.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from viblists.c:164: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ viblists.c: In function ‘Nlm_SetListPosition’: viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable] 1121 | Nlm_Boolean is_realized; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmenus.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmenus.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibmenus.c: In function ‘Nlm_IsMenuItemChecked’: vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 563 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_CheckMenuItem’: vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 591 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableMenuItem’: vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2006 | Nlm_Int2 itm; | ^~~ vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2005 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoice’: vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2072 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoiceGroup’: vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2122 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoiceItem’: vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2166 | Nlm_Int2 itm; | ^~~ vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2164 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableMenuItem’: vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2329 | Nlm_Int2 itm; | ^~~ vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2328 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableChoice’: vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2395 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableChoiceItem’: vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2489 | Nlm_Int2 itm; | ^~~ vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2487 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_RemoveSubMenu’: vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2627 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_CountMenuItems’: vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 3056 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_GetMenuItem’: vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 3239 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_GetPopListTitle’: vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 3349 | Nlm_MenU m; | ^ vibmenus.c: In function ‘Nlm_AppendItems’: vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable] 3978 | Nlm_Char accel; | ^~~~~ vibmenus.c: In function ‘Nlm_NewPopupList’: vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable] 4969 | Widget lbl; | ^~~ vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable] 4967 | Pixel color; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibprmpt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibprmpt.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibsbars.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibsbars.c:135: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibslate.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibslate.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibslate.c: In function ‘Nlm_EnableSlate’: vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 1199 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_DisableSlate’: vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 1254 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_SelectSlate’: vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=] 1515 | XtVaGetValues (h, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=] 1517 | XtVaGetValues (h, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SelectPanel’: vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=] 1544 | XtVaGetValues (h, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=] 1546 | XtVaGetValues (h, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateClick’: vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2026 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_SlateClickCallback’: vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=] 2157 | XtVaGetValues (w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=] 2159 | XtVaGetValues (w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateInputCallback’: vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=] 2313 | XtVaGetValues(w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=] 2315 | XtVaGetValues(w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateDrawCallback’: vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=] 2359 | XtVaGetValues (w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=] 2361 | XtVaGetValues (w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_ResetPanel’: vibslate.c:1390:5: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1390 | rst ((Nlm_PaneL) p); | ^~~~~~~~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_RemoveSlate’: vibslate.c:1454:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1454 | rst (p); | ^~~~~~~ vibslate.c:1450:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1450 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:1449:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c: In function ‘Nlm_ResetSlate’: vibslate.c:1354:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1354 | rst (p); | ^~~~~~~ vibslate.c:1347:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1347 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:1346:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c: In function ‘Nlm_SlateDrawCallback’: vibslate.c:2215:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.click’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.drag’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.hold’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.release’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2223:11: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2223 | drw (p); | ^~~~~~~ vibslate.c:560:18: note: ‘pdata.draw’ was declared here 560 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2216:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2216 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2202:20: note: ‘pdata.reset’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2216:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2216 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2202:20: note: ‘pdata.draw’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c: In function ‘Nlm_SlateClick’: vibslate.c:2048:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2053:12: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2053 | if (clk != NULL && Nlm_GetEnabled ((Nlm_GraphiC) p) | ^ vibslate.c:2049:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2049 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2049:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2049 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibtexts.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibtexts.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibtexts.c: In function ‘Nlm_TextCallback’: vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable] 2982 | XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data; | ^~~ vibtexts.c: In function ‘Nlm_LoseFocusCallback’: vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable] 2999 | XmAnyCallbackStruct *cbs; | ^~~ vibtexts.c: In function ‘Nlm_TabCallback’: vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable] 3109 | XKeyEvent *event; | ^~~~~ vibtexts.c: In function ‘Nlm_HiddenReturnCallback’: vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable] 3122 | XKeyEvent *event; | ^~~~~ vibtexts.c: In function ‘Nlm_HiddenActivateCallback’: vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable] 3135 | XmAnyCallbackStruct *cbs; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from vibutils.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibwndws.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibwndws.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibwndws.c: In function ‘Nlm_SetColorMap’: vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable] 1060 | int defaultdepth; | ^~~~~~~~~~~~ vibwndws.c: In function ‘Nlm_SetWindowTitle’: vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 1567 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_GetWindowTitle’: vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 1610 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_NewWindow’: vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable] 2155 | int screen_num; | ^~~~~~~~~~ vibwndws.c: In function ‘Nlm_HideWindow’: vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 2526 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowNormal’: vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 2969 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowModal’: vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 3014 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowDocument’: vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 3060 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_VibMainPrelude’: vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable] 6800 | Nlm_Int2 retval; | ^~~~~~ vibwndws.c: In function ‘Nlm_RemoveDyingWindows’: vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 6922 | Nlm_WindowTool wptr; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmain.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmain.c:40: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int] 121 | main (int argc, char *argv[]) | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ncbidraw.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbidraw.c: In function ‘Nlm_CleanUpDrawingTools’: ncbidraw.c:7541:5: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7541 | XFreeFont (Nlm_currentXDisplay, fdata.handle); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawing.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from drawing.c:128: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mapping.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from mapping.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mapping.c: In function ‘Nlm_MapRectToWorldBox’: mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable] 139 | Int4 curScale; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF picture.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from picture.c:100: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from viewer.c:120: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF document.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from document.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ document.c: In function ‘Nlm_PrintDocument’: document.c:4419:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4419 | system (cmmd); | ^~~~~~~~~~~~~ document.c:4423:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4423 | system (cmmd); | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF table.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from table.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF palette.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from palette.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF diagnost.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from diagnost.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF image.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from image.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ image.c: In function ‘ShiftXMask’: image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses] 840 | if(!((mask >> hi + low) & (unsigned long)1)) break; | ~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pictur3d.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/pictur3d.h:49, from ../include/ppict3d.h:49, from pictur3d.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pictur3d.c: In function ‘Nlm_DeleteFromSeg’: pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 114 | else seg->first = b->next; | ^~~~ pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 115 | if ( seg->last == b ) seg->last = bprev; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d1.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d2.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d3.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d4.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d5.c:66: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer3d.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmouse.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibmouse.c:67: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF netscape.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from netscape.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netscape.c: In function ‘NS_Obtain_lock’: netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable] 236 | Bool waited = False; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF imagelst.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/imagelst.h:52, from imagelst.c:61: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF treeview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/treemgr.h:67, from treeview.c:91: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF shim3d.c shim3d.c: In function ‘Nlm_AddHalfWorm3D’: shim3d.c:3470:46: warning: unused variable ‘tmp’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:40: warning: unused variable ‘pCz’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:34: warning: unused variable ‘pCy’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:28: warning: unused variable ‘pCx’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:22: warning: unused variable ‘pNz’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:16: warning: unused variable ‘pNy’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:10: warning: unused variable ‘pNx’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3469:47: warning: unused variable ‘Cz’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:42: warning: unused variable ‘Cy’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:37: warning: unused variable ‘Cx’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:32: warning: unused variable ‘Nz’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:27: warning: unused variable ‘Ny’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:15: warning: unused variable ‘Nx’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3468:21: warning: unused variable ‘pi’ [-Wunused-variable] 3468 | cosj, sinj, pi = 3.14159265358979323846; | ^~ shim3d.c:3468:15: warning: unused variable ‘sinj’ [-Wunused-variable] 3468 | cosj, sinj, pi = 3.14159265358979323846; | ^~~~ shim3d.c:3468:9: warning: unused variable ‘cosj’ [-Wunused-variable] 3468 | cosj, sinj, pi = 3.14159265358979323846; | ^~~~ shim3d.c:3467:33: warning: unused variable ‘prevlen’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~~~~~~ shim3d.c:3467:29: warning: unused variable ‘Vz’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:25: warning: unused variable ‘Vy’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:21: warning: unused variable ‘Vx’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:17: warning: unused variable ‘Hz’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:13: warning: unused variable ‘Hy’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:9: warning: unused variable ‘Hx’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3466:21: warning: unused variable ‘dQtz’ [-Wunused-variable] 3466 | dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/ | ^~~~ shim3d.c:3466:15: warning: unused variable ‘dQty’ [-Wunused-variable] 3466 | dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/ | ^~~~ shim3d.c:3466:9: warning: unused variable ‘dQtx’ [-Wunused-variable] 3466 | dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/ | ^~~~ shim3d.c:3464:14: warning: unused variable ‘len’ [-Wunused-variable] 3464 | GLdouble len, R1x, R1y, R1z, R2x, R2y, R2z, MG[4][3], | ^~~ shim3d.c:3463:26: warning: unused variable ‘offset’ [-Wunused-variable] 3463 | Nlm_Int4 i, j, k, m, offset; | ^~~~~~ shim3d.c:3463:23: warning: unused variable ‘m’ [-Wunused-variable] 3463 | Nlm_Int4 i, j, k, m, offset; | ^ shim3d.c:3463:20: warning: unused variable ‘k’ [-Wunused-variable] 3463 | Nlm_Int4 i, j, k, m, offset; | ^ shim3d.c:3463:17: warning: unused variable ‘j’ [-Wunused-variable] 3463 | Nlm_Int4 i, j, k, m, offset; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF odlbox.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from odlbox.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ odlbox.c: In function ‘LB_onVScroll’: odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable] 424 | Boolean IsGoUp=FALSE; | ^~~~~~ rm -f libvibrant.a ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibrant.a ../lib ranlib ../lib/libvibrant.a mv vibbutns.o vibbutns.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibbutns.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibbutns.c: In function ‘Nlm_CheckCallback’: vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 354 | Nlm_ControlTool c; | ^ vibbutns.c: In function ‘Nlm_RadioCallback’: vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 373 | Nlm_ControlTool c; | ^ vibbutns.c: In function ‘Nlm_SetButtonStatus’: vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 694 | Nlm_Int2 val; | ^~~ mv vibbutns.o vibbutns.glo mv vibbutns.tmp vibbutns.o mv vibextra.o vibextra.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibextra.c:87: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibextra.c: In function ‘Nlm_RGB2HSL.constprop’: vibextra.c:1219:13: warning: ‘min’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1219 | i++; if ( i > 2 ) i=0; | ^ mv vibextra.o vibextra.glo mv vibextra.tmp vibextra.o mv vibfiles.o vibfiles.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibfiles.c: In function ‘Nlm_CardToStr’: vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~ vibfiles.c:715:18: note: directive argument in the range [0, 65535] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function ‘Nlm_IntToStr’: vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 725 | sprintf (temp, "%*d", length, intval); | ^~~ vibfiles.c:725:18: note: directive argument in the range [-32768, 32767] 725 | sprintf (temp, "%*d", length, intval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv vibfiles.o vibfiles.glo mv vibfiles.tmp vibfiles.o mv vibforms.o vibforms.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibforms.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibforms.o vibforms.glo mv vibforms.tmp vibforms.o mv vibgroup.o vibgroup.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibgroup.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibgroup.o vibgroup.glo mv vibgroup.tmp vibgroup.o mv viblists.o viblists.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from viblists.c:164: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ viblists.c: In function ‘Nlm_SetListPosition’: viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable] 1121 | Nlm_Boolean is_realized; | ^~~~~~~~~~~ mv viblists.o viblists.glo mv viblists.tmp viblists.o mv vibmenus.o vibmenus.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmenus.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibmenus.c: In function ‘Nlm_IsMenuItemChecked’: vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 563 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_CheckMenuItem’: vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 591 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableMenuItem’: vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2006 | Nlm_Int2 itm; | ^~~ vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2005 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoice’: vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2072 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoiceGroup’: vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2122 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoiceItem’: vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2166 | Nlm_Int2 itm; | ^~~ vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2164 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableMenuItem’: vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2329 | Nlm_Int2 itm; | ^~~ vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2328 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableChoice’: vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2395 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableChoiceItem’: vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2489 | Nlm_Int2 itm; | ^~~ vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2487 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_RemoveSubMenu’: vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2627 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_CountMenuItems’: vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 3056 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_GetMenuItem’: vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 3239 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_GetPopListTitle’: vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 3349 | Nlm_MenU m; | ^ vibmenus.c: In function ‘Nlm_AppendItems’: vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable] 3978 | Nlm_Char accel; | ^~~~~ vibmenus.c: In function ‘Nlm_NewPopupList’: vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable] 4969 | Widget lbl; | ^~~ vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable] 4967 | Pixel color; | ^~~~~ mv vibmenus.o vibmenus.glo mv vibmenus.tmp vibmenus.o mv vibprmpt.o vibprmpt.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibprmpt.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibprmpt.o vibprmpt.glo mv vibprmpt.tmp vibprmpt.o mv vibsbars.o vibsbars.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibsbars.c:135: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibsbars.o vibsbars.glo mv vibsbars.tmp vibsbars.o mv vibslate.o vibslate.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibslate.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibslate.c: In function ‘Nlm_EnableSlate’: vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 1199 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_DisableSlate’: vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 1254 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_SelectSlate’: vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=] 1515 | XtVaGetValues (h, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=] 1517 | XtVaGetValues (h, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SelectPanel’: vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=] 1544 | XtVaGetValues (h, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=] 1546 | XtVaGetValues (h, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateClick’: vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2026 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_SlateClickCallback’: vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=] 2157 | XtVaGetValues (w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=] 2159 | XtVaGetValues (w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateInputCallback’: vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=] 2313 | XtVaGetValues(w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=] 2315 | XtVaGetValues(w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateDrawCallback’: vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=] 2359 | XtVaGetValues (w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=] 2361 | XtVaGetValues (w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_Set3DColorMap’: vibslate.c:2686:17: warning: unused variable ‘testvisual’ [-Wunused-variable] 2686 | Boolean testvisual; | ^~~~~~~~~~ vibslate.c:2685:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable] 2685 | int defaultdepth; | ^~~~~~~~~~~~ vibslate.c: In function ‘Nlm_ResetPanel’: vibslate.c:1390:5: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1390 | rst ((Nlm_PaneL) p); | ^~~~~~~~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_RemoveSlate’: vibslate.c:1454:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1454 | rst (p); | ^~~~~~~ vibslate.c:1450:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1450 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:1449:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c: In function ‘Nlm_ResetSlate’: vibslate.c:1354:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1354 | rst (p); | ^~~~~~~ vibslate.c:1347:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1347 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:1346:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c: In function ‘Nlm_SlateDrawCallback’: vibslate.c:2215:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.click’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.drag’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.hold’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.release’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2223:11: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2223 | drw (p); | ^~~~~~~ vibslate.c:560:18: note: ‘pdata.draw’ was declared here 560 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2216:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2216 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2202:20: note: ‘pdata.reset’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2216:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2216 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2202:20: note: ‘pdata.draw’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c: In function ‘Nlm_SlateClick’: vibslate.c:2048:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2053:12: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2053 | if (clk != NULL && Nlm_GetEnabled ((Nlm_GraphiC) p) | ^ vibslate.c:2049:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2049 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2049:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2049 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ mv vibslate.o vibslate.glo mv vibslate.tmp vibslate.o mv vibtexts.o vibtexts.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibtexts.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibtexts.c: In function ‘Nlm_TextCallback’: vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable] 2982 | XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data; | ^~~ vibtexts.c: In function ‘Nlm_LoseFocusCallback’: vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable] 2999 | XmAnyCallbackStruct *cbs; | ^~~ vibtexts.c: In function ‘Nlm_TabCallback’: vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable] 3109 | XKeyEvent *event; | ^~~~~ vibtexts.c: In function ‘Nlm_HiddenReturnCallback’: vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable] 3122 | XKeyEvent *event; | ^~~~~ vibtexts.c: In function ‘Nlm_HiddenActivateCallback’: vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable] 3135 | XmAnyCallbackStruct *cbs; | ^~~ mv vibtexts.o vibtexts.glo mv vibtexts.tmp vibtexts.o mv vibutils.o vibutils.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from vibutils.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibutils.o vibutils.glo mv vibutils.tmp vibutils.o mv vibwndws.o vibwndws.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibwndws.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibwndws.c: In function ‘Nlm_SetColorMap’: vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable] 1060 | int defaultdepth; | ^~~~~~~~~~~~ vibwndws.c: In function ‘Nlm_SetWindowTitle’: vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 1567 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_GetWindowTitle’: vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 1610 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_NewWindow’: vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable] 2155 | int screen_num; | ^~~~~~~~~~ vibwndws.c: In function ‘Nlm_HideWindow’: vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 2526 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowNormal’: vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 2969 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowModal’: vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 3014 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowDocument’: vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 3060 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_VibMainPrelude’: vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable] 6800 | Nlm_Int2 retval; | ^~~~~~ vibwndws.c: In function ‘Nlm_RemoveDyingWindows’: vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 6922 | Nlm_WindowTool wptr; | ^~~~ At top level: vibwndws.c:1318:16: warning: ‘Nlm_StandardColormap’ defined but not used [-Wunused-function] 1318 | static Boolean Nlm_StandardColormap(Colormap *cMap, | ^~~~~~~~~~~~~~~~~~~~ mv vibwndws.o vibwndws.glo mv vibwndws.tmp vibwndws.o mv vibmain.o vibmain.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmain.c:40: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int] 121 | main (int argc, char *argv[]) | ^~~~ mv vibmain.o vibmain.glo mv vibmain.tmp vibmain.o mv ncbidraw.o ncbidraw.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ncbidraw.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbidraw.c: In function ‘Nlm_CleanUpDrawingTools’: ncbidraw.c:7541:5: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7541 | XFreeFont (Nlm_currentXDisplay, fdata.handle); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv ncbidraw.o ncbidraw.glo mv ncbidraw.tmp ncbidraw.o mv drawing.o drawing.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from drawing.c:128: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv drawing.o drawing.glo mv drawing.tmp drawing.o mv mapping.o mapping.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from mapping.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mapping.c: In function ‘Nlm_MapRectToWorldBox’: mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable] 139 | Int4 curScale; | ^~~~~~~~ mv mapping.o mapping.glo mv mapping.tmp mapping.o mv picture.o picture.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from picture.c:100: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv picture.o picture.glo mv picture.tmp picture.o mv viewer.o viewer.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from viewer.c:120: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv viewer.o viewer.glo mv viewer.tmp viewer.o mv document.o document.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from document.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ document.c: In function ‘Nlm_PrintDocument’: document.c:4419:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4419 | system (cmmd); | ^~~~~~~~~~~~~ document.c:4423:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4423 | system (cmmd); | ^~~~~~~~~~~~~ mv document.o document.glo mv document.tmp document.o mv table.o table.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from table.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv table.o table.glo mv table.tmp table.o mv palette.o palette.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from palette.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv palette.o palette.glo mv palette.tmp palette.o mv diagnost.o diagnost.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from diagnost.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv diagnost.o diagnost.glo mv diagnost.tmp diagnost.o mv image.o image.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from image.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ image.c: In function ‘ShiftXMask’: image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses] 840 | if(!((mask >> hi + low) & (unsigned long)1)) break; | ~~~^~~~~ mv image.o image.glo mv image.tmp image.o mv pictur3d.o pictur3d.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/pictur3d.h:49, from ../include/ppict3d.h:49, from pictur3d.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pictur3d.c: In function ‘Nlm_DeleteFromSeg’: pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 114 | else seg->first = b->next; | ^~~~ pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 115 | if ( seg->last == b ) seg->last = bprev; | ^~ mv pictur3d.o pictur3d.glo mv pictur3d.tmp pictur3d.o mv prim3d1.o prim3d1.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d1.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d1.o prim3d1.glo mv prim3d1.tmp prim3d1.o mv prim3d2.o prim3d2.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d2.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d2.o prim3d2.glo mv prim3d2.tmp prim3d2.o mv prim3d3.o prim3d3.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d3.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d3.o prim3d3.glo mv prim3d3.tmp prim3d3.o mv prim3d4.o prim3d4.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d4.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d4.o prim3d4.glo mv prim3d4.tmp prim3d4.o mv prim3d5.o prim3d5.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d5.c:66: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d5.o prim3d5.glo mv prim3d5.tmp prim3d5.o mv viewer3d.o viewer3d.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c mv viewer3d.o viewer3d.glo mv viewer3d.tmp viewer3d.o mv vibmouse.o vibmouse.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibmouse.c:67: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibmouse.o vibmouse.glo mv vibmouse.tmp vibmouse.o mv netscape.o netscape.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from netscape.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netscape.c: In function ‘NS_Obtain_lock’: netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable] 236 | Bool waited = False; | ^~~~~~ mv netscape.o netscape.glo mv netscape.tmp netscape.o mv imagelst.o imagelst.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/imagelst.h:52, from imagelst.c:61: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv imagelst.o imagelst.glo mv imagelst.tmp imagelst.o mv treeview.o treeview.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/treemgr.h:67, from treeview.c:91: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv treeview.o treeview.glo mv treeview.tmp treeview.o mv shim3d.o shim3d.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c shim3d.c: In function ‘OGL_AddCylinder3D’: shim3d.c:918:14: warning: unused variable ‘iCount’ [-Wunused-variable] 918 | Nlm_Int4 iCount; | ^~~~~~ shim3d.c: In function ‘OGL_AddText3D’: shim3d.c:1210:22: warning: unused variable ‘i’ [-Wunused-variable] 1210 | Nlm_Int4 Length, i; | ^ shim3d.c: In function ‘OGL_Zoom_DragMA’: shim3d.c:1770:16: warning: unused variable ‘OGL_Data’ [-Wunused-variable] 1770 | TOGL_Data *OGL_Data = MAToOGL(ma); | ^~~~~~~~ shim3d.c: In function ‘OGL_Hit’: shim3d.c:2065:37: warning: left shift count >= width of type [-Wshift-count-overflow] 2065 | ZMinName = ZMinName << (sizeof(GLuint) * 8); | ^~ shim3d.c: In function ‘write_row_callback’: shim3d.c:2923:48: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2923 | (((float) row) / (-nRows)) * ((end - start) / 15) | ~~~~~^~~~~~~~ shim3d.c:2923:48: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from shim3d.c:331: In function ‘strncpy’, inlined from ‘Nlm_FindAvailableFonts’ at shim3d.c:2234:9: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shim3d.c: In function ‘SetOGLFont’: shim3d.c:2381:64: warning: ‘closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2381 | fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]); | ^ shim3d.c:2376:37: warning: ‘mindiff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2376 | if (ii == 0 || diff < mindiff) { | ~~~~~^~~~~~~~~ shim3d.c:2381:64: warning: ‘list’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2381 | fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]); | ^ shim3d.c: In function ‘Nlm_AddHalfWorm3D’: shim3d.c:3463:26: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3463 | Nlm_Int4 i, j, k, m, offset; | ^~~~~~ mv shim3d.o shim3d.glo mv shim3d.tmp shim3d.o mv odlbox.o odlbox.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from odlbox.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ odlbox.c: In function ‘LB_onVScroll’: odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable] 424 | Boolean IsGoUp=FALSE; | ^~~~~~ mv odlbox.o odlbox.glo mv odlbox.tmp odlbox.o rm -f libvibrantOGL.a ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibrantOGL.a ../lib ranlib ../lib/libvibrantOGL.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from accentr.c:297: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ accentr.c: In function ‘EntrezBiostrucGet’: accentr.c:2113:17: warning: unused variable ‘retval’ [-Wunused-variable] 2113 | BiostrucPtr retval = NULL; | ^~~~~~ accentr.c: In function ‘EntrezGIForSeqIdFunc’: accentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3283 | if (! gi) return OM_MSG_RET_OK; | ^~ accentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3285 | sip2 = ValNodeNew(NULL); | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from ../include/accutils.h:119, from accutils.c:149: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from ../include/accutils.h:119, from accutils.c:149: In function ‘strncpy’, inlined from ‘EntrezFieldToString’ at accutils.c:691:13: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libncbiacc.a ar cru libncbiacc.a accentr.o accutils.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiacc.a ../lib ranlib ../lib/libncbiacc.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from drawseq.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ drawseq.c: In function ‘AddFlatNodeSymbol’: drawseq.c:811:7: warning: unused variable ‘symbol_height’ [-Wunused-variable] 811 | Int4 symbol_height = 8; | ^~~~~~~~~~~~~ drawseq.c: In function ‘AddAlignBlocks’: drawseq.c:970:7: warning: variable ‘c_num’ set but not used [-Wunused-but-set-variable] 970 | Int2 c_num; | ^~~~~ drawseq.c: In function ‘AddAlignFeature’: drawseq.c:1369:8: warning: unused variable ‘ptype’ [-Wunused-variable] 1369 | Uint1 ptype = 0; | ^~~~~ drawseq.c: In function ‘AddAlignmentMismatch’: drawseq.c:1523:7: warning: variable ‘i_right’ set but not used [-Wunused-but-set-variable] 1523 | Int4 i_right; | ^~~~~~~ drawseq.c: In function ‘DrawRestrictionMap’: drawseq.c:1811:10: warning: unused variable ‘retval’ [-Wunused-variable] 1811 | Boolean retval = FALSE; | ^~~~~~ drawseq.c:1802:15: warning: variable ‘center’ set but not used [-Wunused-but-set-variable] 1802 | Int4 x1, x2, center; | ^~~~~~ drawseq.c: In function ‘DrawFeatures’: drawseq.c:2563:7: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 2563 | Int2 entityID; | ^~~~~~~~ drawseq.c: In function ‘DrawOneSeqLoc’: drawseq.c:3020:10: warning: variable ‘show_seq_label’ set but not used [-Wunused-but-set-variable] 3020 | Boolean show_seq_label = TRUE; /*show the label of a sequence*/ | ^~~~~~~~~~~~~~ drawseq.c:3009:10: warning: variable ‘ends’ set but not used [-Wunused-but-set-variable] 3009 | Boolean ends; | ^~~~ drawseq.c: In function ‘Label_GData’: drawseq.c:3439:10: warning: variable ‘success’ set but not used [-Wunused-but-set-variable] 3439 | Boolean success = FALSE; | ^~~~~~~ drawseq.c: In function ‘DrawEquivAlign’: drawseq.c:3594:8: warning: unused variable ‘my_gray_color’ [-Wunused-variable] 3594 | Uint1 my_gray_color[]={63, 63, 63}; | ^~~~~~~~~~~~~ drawseq.c: In function ‘load_align_label_rectangle’: drawseq.c:4352:10: warning: variable ‘found_it’ set but not used [-Wunused-but-set-variable] 4352 | Boolean found_it; | ^~~~~~~~ drawseq.c: In function ‘PicForAlignNode’: drawseq.c:4558:18: warning: variable ‘min_scale’ set but not used [-Wunused-but-set-variable] 4558 | Int4 max_width, min_scale; | ^~~~~~~~~ At top level: drawseq.c:3525:22: warning: ‘get_ith_arp’ defined but not used [-Wunused-function] 3525 | static AlignRangePtr get_ith_arp(AlignRangePtr arp, Int2 i) | ^~~~~~~~~~~ drawseq.c:3511:18: warning: ‘get_map_pos’ defined but not used [-Wunused-function] 3511 | static MapPosPtr get_map_pos(MapLayoutPtr mlp, SeqIdPtr sip) | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotmatrx.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dotmatrx.h:47, from dotmatrx.c:32: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fea2seg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from fea2seg.c:74: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fstyle.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from fstyle.c:55: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smdlg1.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smdlg2.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ smdlg2.c: In function ‘Nlm_CreateDlgGroup’: smdlg2.c:631:12: warning: variable ‘toAlign’ set but not used [-Wunused-but-set-variable] 631 | Handle toAlign[3]; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smdlg3.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ smdlg3.c: In function ‘FeatureExtraDraw’: smdlg3.c:508:17: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 508 | p1.y = (y0+y1)/2; p2.y = y0; | ~~~^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smtools.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smtools.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ smtools.c: In function ‘Nlm_CtreateToolsSM’: smtools.c:534:30: warning: ‘%s’ directive writing up to 227 bytes into a region of size 32 [-Wformat-overflow=] 534 | sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size ); | ^~ smtools.c:534:29: note: directive argument in the range [-32768, 32767] 534 | sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size ); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smtools.c:48: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 235 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF styleman.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from styleman.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF stylemui.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from stylemui.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF glbpic.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from glbpic.c:22: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ glbpic.c: In function ‘label_linear_mark’: glbpic.c:1295:7: warning: unused variable ‘tick_len’ [-Wunused-variable] 1295 | Int4 tick_len = TICK_LEN; | ^~~~~~~~ glbpic.c: In function ‘add_alignment_to_global’: glbpic.c:1552:8: warning: variable ‘p_val’ set but not used [-Wunused-but-set-variable] 1552 | Uint1 p_val; | ^~~~~ At top level: glbpic.c:1748:16: warning: ‘get_print_score’ defined but not used [-Wunused-function] 1748 | static Boolean get_print_score(FloatHi min_score, FloatHi max_score, CharPtr label, Uint1 status) | ^~~~~~~~~~~~~~~ glbpic.c:584:19: warning: ‘extract_align_range’ defined but not used [-Wunused-function] 584 | static ValNodePtr extract_align_range(ValNodePtr PNTR arp_list, Uint1 displayOrder) | ^~~~~~~~~~~~~~~~~~~ glbpic.c: In function ‘get_circle_label_align’: glbpic.c:2349:9: warning: ‘align’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2349 | return align; | ^~~~~ glbpic.c: In function ‘label_circle_mark.isra’: glbpic.c:2474:26: warning: ‘first_left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2474 | if(ABS(first_left - left) < (t_width +3)) | ^ glbpic.c:2473:24: warning: ‘first_top’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2473 | if(ABS(first_top - top )< (font_height+3)) | ^ glbpic.c:2417:30: warning: ‘first_align’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2417 | Uint1 label_align, p_align, first_align; | ^~~~~~~~~~~ glbpic.c:2469:28: warning: ‘first_width’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2469 | t_width = (first_width + width)/2; | ~~~~~~~~~~~~~^~~~~~~~ glbpic.c:2417:21: warning: ‘p_align’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2417 | Uint1 label_align, p_align, first_align; | ^~~~~~~ In file included from ../include/glbpic.h:7, from glbpic.c:23: glbpic.c: In function ‘add_alignment_to_global’: ../include/picture.h:520:22: warning: ‘g_top’ may be used uninitialized in this function [-Wmaybe-uninitialized] 520 | #define AddTextLabel Nlm_AddTextLabel | ^~~~~~~~~~~~~~~~ glbpic.c:1560:7: note: ‘g_top’ was declared here 1560 | Int4 g_top, g_bottom; | ^~~~~ glbpic.c: In function ‘Draw_Global’: glbpic.c:2177:12: warning: ‘seglen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2177 | m_stop += seglen; | ~~~~~~~^~~~~~~~~ glbpic.c:1943:8: note: ‘seglen’ was declared here 1943 | Int4 seglen; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF layout.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/layout.h:3, from layout.c:2: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ layout.c: In function ‘LayoutNodeFlat’: layout.c:326:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 326 | ValNodePtr vnp, next, prev; | ^~~~ layout.c: In function ‘layout_uncompressed_group’: layout.c:1244:20: warning: variable ‘group_stop’ set but not used [-Wunused-but-set-variable] 1244 | Int2 group_start, group_stop; | ^~~~~~~~~~ layout.c: In function ‘LayoutFeatNode’: layout.c:1365:17: warning: variable ‘y_next’ set but not used [-Wunused-but-set-variable] 1365 | Int4 cur_line, y_next; | ^~~~~~ layout.c:1364:17: warning: variable ‘labelstyle’ set but not used [-Wunused-but-set-variable] 1364 | Int4 segstyle, labelstyle; | ^~~~~~~~~~ layout.c:1363:10: warning: variable ‘show_trunc’ set but not used [-Wunused-but-set-variable] 1363 | Boolean show_trunc = FALSE; | ^~~~~~~~~~ layout.c:1350:10: warning: variable ‘k’ set but not used [-Wunused-but-set-variable] 1350 | Int2 i, k; | ^ layout.c: In function ‘LayoutAlignNode’: layout.c:2208:7: warning: unused variable ‘num’ [-Wunused-variable] 2208 | Int4 num = 0; | ^~~ At top level: layout.c:1779:16: warning: ‘modify_master_line’ defined but not used [-Wunused-function] 1779 | static Boolean modify_master_line(ValNodePtr vnp, Int4Ptr m_left, Int4Ptr m_right, Int4 maxScale, Uint1 label_align) | ^~~~~~~~~~~~~~~~~~ layout.c: In function ‘GroupFeatNode’: layout.c:636:14: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 636 | prev->next = new; | ~~~~~~~~~~~^~~~~ layout.c:594:35: note: ‘prev’ was declared here 594 | ValNodePtr my_node = NULL, curr, prev, next; | ^~~~ layout.c: In function ‘OrderCdsmRNA’: layout.c:969:14: warning: ‘m_missed’ may be used uninitialized in this function [-Wmaybe-uninitialized] 969 | else if(missed == m_missed && m_offset > offset) | ^ layout.c:940:15: note: ‘m_missed’ was declared here 940 | Int2 missed, m_missed; /*number of exons missed at both end*/ | ^~~~~~~~ layout.c: In function ‘LayoutFeatNode’: layout.c:1503:12: warning: ‘p_right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1503 | p_right = MAX(right, p_right); layout.c:1502:11: warning: ‘p_left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1502 | p_left = MIN(left, p_left); layout.c:1504:14: warning: ‘height’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1504 | maxHeight = MAX(height, maxHeight); layout.c: In function ‘LayoutAlignNode’: layout.c:2215:17: warning: ‘next_line’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | Int4 cur_line, next_line; | ^~~~~~~~~ layout.c:2251:7: warning: ‘next’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2251 | i = find_align_line_number(anp, vnp->next, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2252 | label_align, &next, &line_status_list, m_right, maxScale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saldist.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/saldist.h:48, from saldist.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ saldist.c: In function ‘AAcode’: saldist.c:1003:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1003 | if (car=='A') return(1); if (car=='B') return(2); | ^~ saldist.c:1003:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1003 | if (car=='A') return(1); if (car=='B') return(2); | ^~ saldist.c:1004:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1004 | if (car=='C') return(3); if (car=='D') return(4); | ^~ saldist.c:1004:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1004 | if (car=='C') return(3); if (car=='D') return(4); | ^~ saldist.c:1005:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1005 | if (car=='E') return(5); if (car=='F') return(6); | ^~ saldist.c:1005:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1005 | if (car=='E') return(5); if (car=='F') return(6); | ^~ saldist.c:1006:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1006 | if (car=='G') return(7); if (car=='H') return(8); | ^~ saldist.c:1006:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1006 | if (car=='G') return(7); if (car=='H') return(8); | ^~ saldist.c:1007:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1007 | if (car=='I') return(9); if (car=='K') return(10); | ^~ saldist.c:1007:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1007 | if (car=='I') return(9); if (car=='K') return(10); | ^~ saldist.c:1008:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1008 | if (car=='L') return(11); if (car=='M') return(12); | ^~ saldist.c:1008:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1008 | if (car=='L') return(11); if (car=='M') return(12); | ^~ saldist.c:1009:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1009 | if (car=='N') return(13); if (car=='P') return(14); | ^~ saldist.c:1009:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1009 | if (car=='N') return(13); if (car=='P') return(14); | ^~ saldist.c:1010:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1010 | if (car=='Q') return(15); if (car=='R') return(16); | ^~ saldist.c:1010:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1010 | if (car=='Q') return(15); if (car=='R') return(16); | ^~ saldist.c:1011:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1011 | if (car=='S') return(17); if (car=='T') return(18); | ^~ saldist.c:1011:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1011 | if (car=='S') return(17); if (car=='T') return(18); | ^~ saldist.c:1012:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1012 | if (car=='V') return(19); if (car=='W') return(20); | ^~ saldist.c:1012:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1012 | if (car=='V') return(19); if (car=='W') return(20); | ^~ saldist.c:1013:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1013 | if (car=='X') return(21); if (car=='Y') return(22); | ^~ saldist.c:1013:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1013 | if (car=='X') return(21); if (car=='Y') return(22); | ^~ saldist.c:1014:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1014 | if (car=='Z') return(23); if (car=='U') return(24); | ^~ saldist.c:1014:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1014 | if (car=='Z') return(23); if (car=='U') return(24); | ^~ saldist.c: In function ‘copy_string’: saldist.c:1289:12: warning: value computed is not used [-Wunused-value] 1289 | *from++; | ^~~~~~~ saldist.c:1302:11: warning: value computed is not used [-Wunused-value] 1302 | *from++; | ^~~~~~~ saldist.c: In function ‘nss_ref_complength’: saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1479 | if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-') | ^ saldist.c:1455:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable] 1455 | c1, c2; | ^~ saldist.c:1455:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable] 1455 | c1, c2; | ^~ saldist.c: In function ‘nss_pw_complength’: saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1572 | if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-') | ^ saldist.c:1547:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable] 1547 | c1, c2; | ^~ saldist.c:1547:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable] 1547 | c1, c2; | ^~ saldist.c: In function ‘nss_gp_complength’: saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1675 | if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-') | ^ saldist.c:1640:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable] 1640 | c1, c2; | ^~ saldist.c:1640:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable] 1640 | c1, c2; | ^~ saldist.c: In function ‘SortbySimProc’: saldist.c:2139:31: warning: variable ‘newsalpd’ set but not used [-Wunused-but-set-variable] 2139 | SeqAlignPtr newsalp, newsalpd; | ^~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from saldist.c:49: saldist.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ saldist.c:1853:22: warning: ‘scangp_calcul’ defined but not used [-Wunused-function] 1853 | static Int4Ptr PNTR scangp_calcul (EditAlignDataPtr adp, Int2 seq1, Int2 seq2, Int4 from, Int4 to, Int2 group, Int2 choice, Int2 win_width) | ^~~~~~~~~~~~~ saldist.c:1080:24: warning: ‘FloatLomatrix’ defined but not used [-Wunused-function] 1080 | static FloatLoPtr PNTR FloatLomatrix (Int2 nrows, Int2 ncol) | ^~~~~~~~~~~~~ saldist.c:999:13: warning: ‘AAcode’ defined but not used [-Wunused-function] 999 | static Int2 AAcode(Char car) | ^~~~~~ saldist.c:928:16: warning: ‘new_matrice’ defined but not used [-Wunused-function] 928 | static Boolean new_matrice (Int2 simmatrix, CharPtr path) | ^~~~~~~~~~~ saldist.c:910:14: warning: ‘matrixlst’ defined but not used [-Wunused-variable] 910 | static Char *matrixlst [] = {"", "idmat", | ^~~~~~~~~ saldist.c: In function ‘writematrixhalf.constprop’: saldist.c:1225:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1225 | vnp=vnp->next; | ~~~^~~~~~~~~~ saldist.c: In function ‘PwDistProc’: saldist.c:1151:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1151 | vnp=vnp->next; | ~~~^~~~~~~~~~ saldist.c:1104:19: note: ‘vnp’ was declared here 1104 | ValNodePtr vnp, | ^~~ saldist.c: In function ‘SortbyLenItem’: saldist.c:2192:11: warning: ‘mink’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2192 | lens [mink] = maxlens + 10; | ^ saldist.c:2172:28: note: ‘mink’ was declared here 2172 | Int2 j, k, mink; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saled.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/saledit.h:48, from saled.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ saled.c: In function ‘ReadAlignmentForSeqEntry’: saled.c:3310:21: warning: unused variable ‘dirty’ [-Wunused-variable] 3310 | dirty = FALSE; | ^~~~~ saled.c:3306:21: warning: unused variable ‘salp’ [-Wunused-variable] 3306 | SeqAlignPtr salp=NULL, | ^~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from saled.c:49: saled.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from saled.c:55: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salfiles.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/saledit.h:48, from ../include/salfiles.h:48, from salfiles.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salfiles.c: In function ‘NewFastaRead’: salfiles.c:315:30: warning: variable ‘lastsegsip’ set but not used [-Wunused-but-set-variable] 315 | SeqIdPtr segsip=NULL, lastsegsip=NULL; | ^~~~~~~~~~ salfiles.c: In function ‘ReadAlignmentToStrings’: salfiles.c:664:16: warning: unused variable ‘nseq’ [-Wunused-variable] 664 | Int2 nseq = 0; | ^~~~ salfiles.c: In function ‘MacawRead’: salfiles.c:1257:15: warning: unused variable ‘vnp’ [-Wunused-variable] 1257 | vnp = NULL; | ^~~ salfiles.c: In function ‘ReadLocalAlign’: salfiles.c:1444:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1444 | while (tmp!='\0' && !isdigit (*tmp)) | ^~ salfiles.c:1444:22: note: did you mean to dereference the pointer? 1444 | while (tmp!='\0' && !isdigit (*tmp)) | ^ salfiles.c:1446:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1446 | if (tmp!='\0') | ^~ salfiles.c:1446:19: note: did you mean to dereference the pointer? 1446 | if (tmp!='\0') | ^ salfiles.c:1455:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1455 | while (tmp!='\0' && !isdigit (*tmp)) | ^~ salfiles.c:1455:22: note: did you mean to dereference the pointer? 1455 | while (tmp!='\0' && !isdigit (*tmp)) | ^ salfiles.c:1457:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1457 | if (tmp!='\0') | ^~ salfiles.c:1457:19: note: did you mean to dereference the pointer? 1457 | if (tmp!='\0') | ^ salfiles.c:1536:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1536 | while (tmp!='\0' && !isdigit (*tmp)) | ^~ salfiles.c:1536:22: note: did you mean to dereference the pointer? 1536 | while (tmp!='\0' && !isdigit (*tmp)) | ^ salfiles.c:1538:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1538 | if (tmp!='\0') | ^~ salfiles.c:1538:19: note: did you mean to dereference the pointer? 1538 | if (tmp!='\0') | ^ salfiles.c:1547:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1547 | while (tmp!='\0' && !isdigit (*tmp)) | ^~ salfiles.c:1547:22: note: did you mean to dereference the pointer? 1547 | while (tmp!='\0' && !isdigit (*tmp)) | ^ salfiles.c:1549:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1549 | if (tmp!='\0') | ^~ salfiles.c:1549:19: note: did you mean to dereference the pointer? 1549 | if (tmp!='\0') | ^ salfiles.c:1370:14: warning: variable ‘tmp1’ set but not used [-Wunused-but-set-variable] 1370 | tmp1; | ^~~~ salfiles.c: In function ‘ImportFromFile’: salfiles.c:2072:20: warning: unused variable ‘sep’ [-Wunused-variable] 2072 | SeqEntryPtr sep = NULL; | ^~~ salfiles.c:2071:20: warning: unused variable ‘sap’ [-Wunused-variable] 2071 | SeqAnnotPtr sap = NULL; | ^~~ salfiles.c: In function ‘FindSeqEntryForSeqIdCallback’: salfiles.c:2672:12: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2672 | if (SeqIdForSameBioseq(cip->sip, sip)) | ^~ salfiles.c:2674:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2674 | cip->bsp = bsp; | ^~~ salfiles.c: In function ‘sesp_to_pept’: salfiles.c:2713:18: warning: unused variable ‘bufferPtr’ [-Wunused-variable] 2713 | bufferPtr = NULL; | ^~~~~~~~~ salfiles.c: In function ‘SaveFeatProc’: salfiles.c:3387:22: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable] 3387 | Int2 handled; | ^~~~~~~ salfiles.c: In function ‘CCReadAnythingLoop’: salfiles.c:3685:16: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 3685 | Uint2 entityID; | ^~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salfiles.c:48: salfiles.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ salfiles.c:501:19: warning: ‘get_lens_fromseqalign’ defined but not used [-Wunused-function] 501 | static ValNodePtr get_lens_fromseqalign (SeqAlignPtr salp) | ^~~~~~~~~~~~~~~~~~~~~ salfiles.c: In function ‘NewFastaRead.constprop’: salfiles.c:460:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 460 | if (sip!=NULL) | ^ salfiles.c: In function ‘GapFastaRead’: salfiles.c:751:19: warning: ‘seqstr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 751 | seqstr [lgseq] = '\0'; | ^ salfiles.c:654:16: note: ‘seqstr’ was declared here 654 | seqstr; | ^~~~~~ salfiles.c:724:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 724 | if (!startp) { | ^ salfiles.c:660:16: note: ‘startp’ was declared here 660 | Boolean startp; | ^~~~~~ salfiles.c: In function ‘CCDownloadProc’: salfiles.c:2218:9: warning: ‘new_sep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2218 | vnp = SeqEntryToSeqLoc (sep, &n, adp->mol_type); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salfiles.c:2286:15: note: ‘new_sep’ was declared here 2286 | SeqEntryPtr new_sep; | ^~~~~~~ salfiles.c: In function ‘ReadLocalAlignment’: salfiles.c:1287:3: warning: ‘seqvnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1287 | ValNodeFree (seqvnp); | ^~~~~~~~~~~~~~~~~~~~ salfiles.c:1113:19: note: ‘seqvnp’ was declared here 1113 | ValNodePtr vnp, seqvnp; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpanel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/saledit.h:48, from salpanel.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salpanel.c: In function ‘go_to_next_to_draw’: salpanel.c:331:17: warning: statement with no effect [-Wunused-value] 331 | offsettmp; | ^~~~~~~~~ salpanel.c: In function ‘next_to_draw’: salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 471 | if ( curstr != NULL ) | ^ salpanel.c: In function ‘AssociatePropagatedSubloc’: salpanel.c:3131:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 3131 | ValNodePtr vnp; | ^~~ salpanel.c: In function ‘FeaturePropagateForm’: salpanel.c:4674:15: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable] 4674 | PrompT ppt; | ^~~ salpanel.c:4669:15: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 4669 | ButtoN b; | ^ salpanel.c: In function ‘OkToContinueWithFeatureApply’: salpanel.c:6103:14: warning: unused variable ‘num_missing’ [-Wunused-variable] 6103 | Int4 num_missing = 0, seq_num, start_num; | ^~~~~~~~~~~ salpanel.c: In function ‘DoApplyFeatureToAlignment’: salpanel.c:6219:31: warning: unused variable ‘found_null’ [-Wunused-variable] 6219 | Boolean found_null = FALSE; | ^~~~~~~~~~ salpanel.c: In function ‘ApplyFeatureToAlignment’: salpanel.c:6421:31: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 6421 | ButtoN b; | ^ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salpanel.c:45: salpanel.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from salpanel.c:52: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salpanel.c:5059:13: warning: ‘BatchApplyFeatureDetailsMessage’ defined but not used [-Wunused-function] 5059 | static void BatchApplyFeatureDetailsMessage (DialoG d, Int2 mssg) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salpanel.c:224:13: warning: ‘get_client_rectxy’ defined but not used [-Wunused-function] 224 | static void get_client_rectxy (PaneL p, RectPtr prc, Int2 x, Int2 y) | ^~~~~~~~~~~~~~~~~ salpanel.c:113:14: warning: ‘leftOvalFillSym’ defined but not used [-Wunused-variable] 113 | static Uint1 leftOvalFillSym [] = { | ^~~~~~~~~~~~~~~ salpanel.c:110:14: warning: ‘rightOvalFillSym’ defined but not used [-Wunused-variable] 110 | static Uint1 rightOvalFillSym [] = { | ^~~~~~~~~~~~~~~~ salpanel.c:107:14: warning: ‘leftOvalSym’ defined but not used [-Wunused-variable] 107 | static Uint1 leftOvalSym [] = { | ^~~~~~~~~~~ salpanel.c:104:14: warning: ‘rightOvalSym’ defined but not used [-Wunused-variable] 104 | static Uint1 rightOvalSym [] = { | ^~~~~~~~~~~~ salpanel.c:101:14: warning: ‘downTriFillSym’ defined but not used [-Wunused-variable] 101 | static Uint1 downTriFillSym [] = { | ^~~~~~~~~~~~~~ salpanel.c:98:14: warning: ‘upTriFillSym’ defined but not used [-Wunused-variable] 98 | static Uint1 upTriFillSym [] = { | ^~~~~~~~~~~~ salpanel.c:89:14: warning: ‘ovalFillSym’ defined but not used [-Wunused-variable] 89 | static Uint1 ovalFillSym [] = { | ^~~~~~~~~~~ salpanel.c:86:14: warning: ‘diamondFillSym’ defined but not used [-Wunused-variable] 86 | static Uint1 diamondFillSym [] = { | ^~~~~~~~~~~~~~ salpanel.c:80:14: warning: ‘downTriSym’ defined but not used [-Wunused-variable] 80 | static Uint1 downTriSym [] = { | ^~~~~~~~~~ salpanel.c:77:14: warning: ‘upTriSym’ defined but not used [-Wunused-variable] 77 | static Uint1 upTriSym [] = { | ^~~~~~~~ salpanel.c:68:14: warning: ‘ovalSym’ defined but not used [-Wunused-variable] 68 | static Uint1 ovalSym [] = { | ^~~~~~~ salpanel.c:65:14: warning: ‘diamondSym’ defined but not used [-Wunused-variable] 65 | static Uint1 diamondSym [] = { | ^~~~~~~~~~ salpanel.c: In function ‘draw_feat.isra’: salpanel.c:1939:17: warning: ‘col1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1939 | Int4 col1; | ^~~~ salpanel.c: In function ‘on_draw’: salpanel.c:2527:23: warning: ‘draw_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2527 | draw_seq (adp, curssp, from_inseq, drw_width, ptlh, curstr, draw_diff, masterstr, TRUE, itemsubtype, FALSE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salparam.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salparam.c: In function ‘mergelst’: salparam.c:1325:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 1325 | Boolean val; | ^~~ salparam.c: In function ‘unmergelst’: salparam.c:1340:20: warning: variable ‘dbdp’ set but not used [-Wunused-but-set-variable] 1340 | DialogBoxDataPtr dbdp; | ^~~~ salparam.c: In function ‘FormulaDialog’: salparam.c:1398:36: warning: variable ‘b5’ set but not used [-Wunused-but-set-variable] 1398 | ButtoN b1, b2, b3, b4, b5; | ^~ salparam.c: In function ‘JK_NTPattern2Ex’: salparam.c:1596:19: warning: variable ‘debug_str’ set but not used [-Wunused-but-set-variable] 1596 | CharPtr debug_str; | ^~~~~~~~~ salparam.c: In function ‘DotPlotBtn’: salparam.c:1936:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 1936 | Int2 status; | ^~~~~~ salparam.c: In function ‘DotPlotDialog’: salparam.c:1973:20: warning: variable ‘bt1’ set but not used [-Wunused-but-set-variable] 1973 | ButtoN bt1, bt2; | ^~~ salparam.c: In function ‘DotPlotItem’: salparam.c:2004:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 2004 | Int2 status; | ^~~~~~ salparam.c: In function ‘SelectSeqFunc’: salparam.c:2308:20: warning: variable ‘str’ set but not used [-Wunused-but-set-variable] 2308 | CharPtr str; | ^~~ salparam.c: In function ‘HighlightSelectionFunc’: salparam.c:2344:22: warning: variable ‘wdp’ set but not used [-Wunused-but-set-variable] 2344 | SeqEditViewFormPtr wdp; | ^~~ salparam.c: In function ‘PropagateFeatureProc’: salparam.c:2623:25: warning: variable ‘iID’ set but not used [-Wunused-but-set-variable] 2623 | Uint2 eID, iID, | ^~~ salparam.c:2614:20: warning: variable ‘salp’ set but not used [-Wunused-but-set-variable] 2614 | SeqAlignPtr salp; | ^~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salparam.c:49: salparam.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from salparam.c:58: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salparam.c: In function ‘FileInProc’: salparam.c:782:10: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 782 | fscanf(fp, "%d %ld", &n, &lens); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c: In function ‘DotPlotBtn’: salparam.c:1951:13: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1951 | bsp = (BioseqPtr) sep->data.ptrvalue; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c: In function ‘PropagateFeatDialog’: salparam.c:2964:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=] 2964 | sprintf (str2, " (%ld..%ld)", (long)start, (long)stop); | ^~~ salparam.c:2964:24: note: directive argument in the range [-2147483647, 2147483647] 2964 | sprintf (str2, " (%ld..%ld)", (long)start, (long)stop); | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 28 bytes into a destination of size 24 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c:2962:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=] 2962 | sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop); | ^~~ salparam.c:2962:24: note: directive argument in the range [-2147483647, 2147483647] 2962 | sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 21 and 41 bytes into a destination of size 24 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsa.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from salsa.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salsa.c: In function ‘SelectSubsProc’: salsa.c:2140:23: warning: variable ‘svpp’ set but not used [-Wunused-but-set-variable] 2140 | SeqEditViewProcsPtr svpp=NULL; | ^~~~ salsa.c: In function ‘SetSeqInfo’: salsa.c:3195:17: warning: unused variable ‘vnp’ [-Wunused-variable] 3195 | ValNodePtr vnp = NULL; | ^~~ salsa.c: In function ‘SetupAlignDataSap’: salsa.c:3410:16: warning: variable ‘entityID_sap’ set but not used [-Wunused-but-set-variable] 3410 | Uint2 entityID_sap; | ^~~~~~~~~~~~ salsa.c: In function ‘get_bestpos_formerge’: salsa.c:4304:17: warning: variable ‘insert_after’ set but not used [-Wunused-but-set-variable] 4304 | insert_after=FALSE; | ^~~~~~~~~~~~ salsa.c:4303:17: warning: variable ‘insert_before’ set but not used [-Wunused-but-set-variable] 4303 | Boolean insert_before=FALSE, | ^~~~~~~~~~~~~ salsa.c: In function ‘CreateSeqAlignViewForm’: salsa.c:4689:22: warning: variable ‘mergebtn’ set but not used [-Wunused-but-set-variable] 4689 | ButtoN mergebtn; | ^~~~~~~~ salsa.c: In function ‘AlgEditFunc’: salsa.c:4976:23: warning: unused variable ‘wdp’ [-Wunused-variable] 4976 | SeqEditViewFormPtr wdp = NULL; | ^~~ salsa.c:4974:23: warning: unused variable ‘w’ [-Wunused-variable] 4974 | WindoW w = NULL; | ^ salsa.c: In function ‘OldAlignmentEditor’: salsa.c:5106:16: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable] 5106 | Int2 rval; | ^~~~ salsa.c: In function ‘LaunchAnnotAlignEditor’: salsa.c:5293:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable] 5293 | Int2 handled; | ^~~~~~~ salsa.c: In function ‘LaunchAlignEditor’: salsa.c:5310:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable] 5310 | Int2 handled; | ^~~~~~~ salsa.c: In function ‘LaunchAlignViewer’: salsa.c:5327:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable] 5327 | Int2 handled; | ^~~~~~~ salsa.c: In function ‘LaunchAlignEditorFromDesktop’: salsa.c:5342:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable] 5342 | OMProcControlPtr ompcp; | ^~~~~ salsa.c: In function ‘LaunchAlignEditorFromDesktop2’: salsa.c:5359:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable] 5359 | OMProcControlPtr ompcp; | ^~~~~ salsa.c: In function ‘InsertSeqProc’: salsa.c:5538:17: warning: variable ‘cnclbt’ set but not used [-Wunused-but-set-variable] 5538 | ButtoN insbt, cnclbt; | ^~~~~~ salsa.c:5536:10: warning: variable ‘insprt’ set but not used [-Wunused-but-set-variable] 5536 | PrompT insprt; | ^~~~~~ salsa.c: In function ‘SeqAlignBestHit’: salsa.c:5605:22: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 5605 | Int4 last; | ^~~~ salsa.c: In function ‘SeqAlignStartUpdate’: salsa.c:5791:22: warning: variable ‘k’ set but not used [-Wunused-but-set-variable] 5791 | Int2 index, k, j; | ^ salsa.c:5790:15: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 5790 | start; | ^~~~~ salsa.c:5789:15: warning: variable ‘len_sum’ set but not used [-Wunused-but-set-variable] 5789 | Int4 len_sum, | ^~~~~~~ salsa.c:5786:15: warning: variable ‘lenp’ set but not used [-Wunused-but-set-variable] 5786 | Int4Ptr lenp, | ^~~~ salsa.c:5785:15: warning: variable ‘pre’ set but not used [-Wunused-but-set-variable] 5785 | SeqIdPtr pre, sip, next; | ^~~ salsa.c: In function ‘CCNormalizeSeqAlignId’: salsa.c:6746:23: warning: unused variable ‘gi’ [-Wunused-variable] 6746 | Int4 gi = 0; | ^~ salsa.c:6745:17: warning: unused variable ‘missing_fmt’ [-Wunused-variable] 6745 | CharPtr missing_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\n"; | ^~~~~~~~~~~ salsa.c:6744:17: warning: unused variable ‘missing_cont_fmt’ [-Wunused-variable] 6744 | CharPtr missing_cont_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\nContinue anyway?\n"; | ^~~~~~~~~~~~~~~~ salsa.c: In function ‘ValidateSeqAlignandACCEx’: salsa.c:7106:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable] 7106 | MsgAnswer ans; | ^~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salsa.c:48: salsa.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from salsa.c:68: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salsa.c:87:13: warning: ‘InsertSequenceDlg’ declared ‘static’ but never defined [-Wunused-function] 87 | static void InsertSequenceDlg (ButtoN b); | ^~~~~~~~~~~~~~~~~ salsa.c:5973:13: warning: ‘SWPrintFarpointerAln’ defined but not used [-Wunused-function] 5973 | static void SWPrintFarpointerAln(SeqAlignPtr sap, FILE *fp) | ^~~~~~~~~~~~~~~~~~~~ salsa.c:2360:13: warning: ‘MakeCdRgnrProc’ defined but not used [-Wunused-function] 2360 | static void MakeCdRgnrProc (IteM i) { | ^~~~~~~~~~~~~~ salsa.c:2356:13: warning: ‘MakeCdRgnProc’ defined but not used [-Wunused-function] 2356 | static void MakeCdRgnProc (IteM i) { | ^~~~~~~~~~~~~ salsa.c:1760:13: warning: ‘AcceptCloseWindowButton’ defined but not used [-Wunused-function] 1760 | static void AcceptCloseWindowButton (ButtoN b) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from salsa.c:52: ../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable] 50 | static CharPtr GBFeat[number_GBFeat] = { | ^~~~~~ In file included from ../include/ncbi.h:65, from ../include/salsa.h:48, from salsa.c:43: salsa.c: In function ‘ExportFASTAForUnselectedUpdates’: ../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 113 | #define FileClose Nlm_FileClose | ^~~~~~~~~~~~~ salsa.c:6350:23: note: ‘fp’ was declared here 6350 | FILE *fp; | ^~ In file included from ../include/ncbi.h:65, from ../include/salsa.h:48, from salsa.c:43: salsa.c: In function ‘ExportBadAlignments’: ../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 113 | #define FileClose Nlm_FileClose | ^~~~~~~~~~~~~ salsa.c:6318:23: note: ‘fp’ was declared here 6318 | FILE *fp; | ^~ salsa.c: In function ‘SeqAlignBestHit.constprop’: salsa.c:5746:23: warning: ‘nctr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5746 | *nonly = nctr+beg+end; | ~~~~^~~~ salsa.c:5748:24: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5748 | *nonly = -(beg+end); | ~~~~^~~~~ salsa.c:5746:23: warning: ‘beg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5746 | *nonly = nctr+beg+end; | ~~~~^~~~ salsa.c: In function ‘BioseqEditMsgFunc’: salsa.c:912:51: warning: ‘anp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 912 | ssp = SelStructNew (anp->seq_entityID, anp->bsp_itemID, OBJ_BIOSEQ, from, to, anp->sip, Seq_strand_plus, FALSE); | ~~~^~~~~~~~~~~~ salsa.c:890:20: note: ‘anp’ was declared here 890 | AlignNodePtr anp; | ^~~ salsa.c: In function ‘DeleteProc’: salsa.c:1955:165: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1955 | if ((adp->sap1_original && (FindSeqIdinSeqAlign ((SeqAlignPtr)adp->sap1_original->data, SeqLocId(slp))) > 0) || (FindSeqIdinSeqAlign ((SeqAlignPtr)sap->data, SeqLocId(slp))) > 0) | ~~~^~~~~~ salsa.c: In function ‘SkipThisWindowProc’: salsa.c:4591:6: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4591 | LaunchAlignViewer(salp); | ^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqfltr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from seqfltr.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqfltr.c: In function ‘FilterSeq’: seqfltr.c:259:21: warning: ‘fptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 259 | sgp->values = (Pointer) fptr; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgraph.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from seqgraph.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqgraph.c: In function ‘EndPointDialogToEndPointValNode’: seqgraph.c:140:10: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 140 | return (Pointer) eplist; | ^~~~~~~~~~~~~~~~ seqgraph.c: In function ‘SeqLocGraphViewProc’: seqgraph.c:1136:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1136 | while (eplist != NULL) | ^ seqgraph.c: In function ‘CutOffProc’: seqgraph.c:911:11: warning: ‘fval’ may be used uninitialized in this function [-Wmaybe-uninitialized] 911 | val = fval/2; | ~~~~^~~~~~~~ seqgraph.c:841:14: note: ‘fval’ was declared here 841 | FloatHi fval; | ^~~~ seqgraph.c:1018:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1018 | while (eplist != NULL) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgrphx.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from seqgrphx.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqgrphx.c:301:13: warning: ‘CleanupGCFilterForm’ defined but not used [-Wunused-function] 301 | static void CleanupGCFilterForm (GraphiC g, VoidPtr data) | ^~~~~~~~~~~~~~~~~~~ seqgrphx.c:152:25: warning: ‘FilterMsgFunc’ defined but not used [-Wunused-function] 152 | static Int2 LIBCALLBACK FilterMsgFunc (OMMsgStructPtr ommsp) | ^~~~~~~~~~~~~ seqgrphx.c:28:25: warning: ‘MatrixMsgFunc’ defined but not used [-Wunused-function] 28 | static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp) | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmtrx.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from seqmtrx.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqmtrx.c:387:20: warning: ‘MatrixSearch’ defined but not used [-Wunused-function] 387 | static SeqGraphPtr MatrixSearch (BioseqPtr bsp, Int2 matrixtype) | ^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpcc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from seqpcc.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqpcc.c: In function ‘PCCProc’: seqpcc.c:229:14: warning: ‘pbsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 229 | if ((spp = SeqPortNew (pbsp, start, end, 0, Seq_code_iupacaa)) != NULL) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqanal.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from seqanal.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aacomp.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from aacomp.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ aacomp.c:86:20: warning: ‘AACGraph’ defined but not used [-Wunused-function] 86 | static SeqGraphPtr AACGraph (SeqPortPtr spp, Int4 start, Int4 end, Int4 window, | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqscrl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from ../include/seqscrl.h:4, from seqscrl.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valdlg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/vibforms.h:46, from valdlg.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ valdlg.c: In function ‘ClickRulesDoc’: valdlg.c:373:22: warning: unused variable ‘scroll_pos’ [-Wunused-variable] 373 | Int2 scroll_pos = 0; | ^~~~~~~~~~ valdlg.c:372:22: warning: unused variable ‘sb_vert’ [-Wunused-variable] 372 | BaR sb_vert = NULL; | ^~~~~~~ valdlg.c: In function ‘UpdateRuleList’: valdlg.c:479:26: warning: unused variable ‘last_cr’ [-Wunused-variable] 479 | CommentRulePtr new_cr, last_cr = NULL; | ^~~~~~~ valdlg.c: In function ‘SaveRuleChanges’: valdlg.c:540:23: warning: variable ‘dlg’ set but not used [-Wunused-but-set-variable] 540 | CommentSetDlgPtr dlg; | ^~~ valdlg.c: In function ‘LaunchCommentRulesEditor’: valdlg.c:553:23: warning: unused variable ‘m’ [-Wunused-variable] 553 | MenU m; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsm.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/vsmpriv.h:48, from vsm.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vsm.c: In function ‘VSMDrawAbout’: vsm.c:1436:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1436 | if (vsmp->title != NULL) | ^~ vsm.c:1438:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1438 | if (vsmp->aboutinfo != NULL) | ^~ vsm.c: In function ‘VSMAboutProc’: vsm.c:1466:8: warning: variable ‘p’ set but not used [-Wunused-but-set-variable] 1466 | PaneL p; | ^ vsm.c: In function ‘VSeqMgrCreateMainWindow’: vsm.c:1569:12: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable] 1569 | ObjMgrPtr omp; | ^~~ vsm.c: In function ‘VSeqMgrPopulateMain’: vsm.c:1710:13: warning: variable ‘atp’ set but not used [-Wunused-but-set-variable] 1710 | AsnTypePtr atp; | ^~~ vsm.c: In function ‘VSMGatherPictProc’: vsm.c:2193:15: warning: variable ‘bssp’ set but not used [-Wunused-but-set-variable] 2193 | BioseqSetPtr bssp; | ^~~~ vsm.c:2188:30: warning: variable ‘bottom’ set but not used [-Wunused-but-set-variable] 2188 | Int4 top, lineheight, left, bottom, width, maxwidth; | ^~~~~~ vsm.c: In function ‘VSMAddPictureToEntity’: vsm.c:2821:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] 2821 | Pointer ptr; | ^~~ vsm.c:2820:13: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 2820 | ValNodePtr vnp; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmfile.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/vsmpriv.h:48, from vsmfile.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vsmfile.c: In function ‘VSMGenericBinAsnOpen’: vsmfile.c:259:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 259 | ButtoN b; | ^ vsmfile.c: In function ‘VSMGenericFastaSave’: vsmfile.c:395:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable] 395 | Uint1 code; | ^~~~ vsmfile.c: In function ‘VSMFastaProtSaveWithProduct’: vsmfile.c:527:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable] 527 | Uint1 code; | ^~~~ vsmfile.c: In function ‘VSMSaveSetsAsFiles’: vsmfile.c:1368:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable] 1368 | OMProcControlPtr ompcp; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vsmutil.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vsmutil.c: In function ‘GetDocPosForError’: vsmutil.c:1743:18: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 1743 | Int2 val; | ^~~ At top level: vsmutil.c:1628:16: warning: ‘MakeFieldReports’ defined but not used [-Wunused-function] 1628 | static Boolean MakeFieldReports (ValNodePtr report_list, ValNodePtr field_list, FILE *fp) | ^~~~~~~~~~~~~~~~ vsmutil.c:387:20: warning: ‘GetSeqDescGivenIDs’ defined but not used [-Wunused-function] 387 | static SeqDescrPtr GetSeqDescGivenIDs (Uint2 entityID, Uint4 itemID, Uint2 itemtype) | ^~~~~~~~~~~~~~~~~~ vsmutil.c: In function ‘ContinueProc’: vsmutil.c:2256:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 2256 | vep->counts [i] = 0; | ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2255:5: note: within this loop 2255 | for (i = SEV_NONE; i <= SEV_MAX; i++) { | ^~~ vsmutil.c: In function ‘RevalidateProc’: vsmutil.c:2223:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 2223 | vep->counts [i] = 0; | ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2222:5: note: within this loop 2222 | for (i = SEV_NONE; i <= SEV_MAX; i++) { | ^~~ vsmutil.c: In function ‘SetVerbosityAndRepopulate’: vsmutil.c:2297:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 2297 | vep->counts [i] = 0; | ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2296:5: note: within this loop 2296 | for (i = SEV_NONE; i <= SEV_MAX; i++) { | ^~~ vsmutil.c: In function ‘ClearValidateWindow’: vsmutil.c:613:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 613 | vep->counts [sev] = 0; | ~~~~~~~~~~~~~~~~~~^~~ vsmutil.c:612:7: note: within this loop 612 | for (sev = SEV_NONE; sev <= SEV_MAX; sev++) { | ^~~ vsmutil.c: In function ‘CreateValidateWindowExExEx’: vsmutil.c:2620:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 2620 | vep->counts [i] = 0; | ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2619:9: note: within this loop 2619 | for (i = SEV_NONE; i <= SEV_MAX; i++) { | ^~~ vsmutil.c: In function ‘ContinueProc’: vsmutil.c:2256:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 2256 | vep->counts [i] = 0; | ~~~~~~~~~~~~^~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ vsmutil.c: In function ‘RevalidateProc’: vsmutil.c:2223:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 2223 | vep->counts [i] = 0; | ~~~~~~~~~~~~^~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ vsmutil.c: In function ‘SetVerbosityAndRepopulate’: vsmutil.c:2297:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 2297 | vep->counts [i] = 0; | ~~~~~~~~~~~~^~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ vsmutil.c: In function ‘ClearValidateWindow’: vsmutil.c:613:21: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 613 | vep->counts [sev] = 0; | ~~~~~~~~~~~~^~~~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ vsmutil.c: In function ‘CreateValidateWindowExExEx’: vsmutil.c:2620:23: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 2620 | vep->counts [i] = 0; | ~~~~~~~~~~~~^~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvgraph.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvgraph.c:177: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ udvgraph.c: In function ‘UDV_click_item’: udvgraph.c:877:9: warning: unused variable ‘IsTransNeeded’ [-Wunused-variable] 877 | Boolean IsTransNeeded=FALSE; | ^~~~~~~~~~~~~ udvgraph.c: In function ‘UDV_SendBSPSelectMsg’: udvgraph.c:1230:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable] 1230 | Boolean bDeselectAll=TRUE; | ^~~~~~~~~~~~ udvgraph.c:1226:30: warning: variable ‘bsp_coord_old’ set but not used [-Wunused-but-set-variable] 1226 | Int4 first_bsp_coord, bsp_coord_old,old_pos; | ^~~~~~~~~~~~~ udvgraph.c: In function ‘UDV_draw_helixDNA’: udvgraph.c:1827:15: warning: variable ‘cyChar_2’ set but not used [-Wunused-but-set-variable] 1827 | Int2 cxChar_2,cyChar_2; | ^~~~~~~~ udvgraph.c: In function ‘draw_logo’: udvgraph.c:1940:38: warning: variable ‘cyGlobal’ set but not used [-Wunused-but-set-variable] 1940 | Int2 pos,cxChar=7,cyChar=13,cxGlobal,cyGlobal; | ^~~~~~~~ udvgraph.c: In function ‘UDV_draw_CDS_minus’: udvgraph.c:2337:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable] 2337 | Boolean bGiForProductOk=FALSE; | ^~~~~~~~~~~~~~~ udvgraph.c:2332:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable] 2332 | numivals2=0, | ^~~~~~~~~ udvgraph.c: In function ‘UDV_draw_CDS_plus’: udvgraph.c:2461:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable] 2461 | Boolean bGiForProductOk=FALSE; | ^~~~~~~~~~~~~~~ udvgraph.c: In function ‘UDV_draw_panel’: udvgraph.c:4111:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 4111 | if(vdp->vgp->MasterViewer == SAMVIEWDDV) | ^~ udvgraph.c:4113:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 4113 | Row = ViewMgr_GetRow(svpp, vdp->userkey); | ^~~ udvgraph.c:4041:21: warning: unused variable ‘vnp_seqinfo’ [-Wunused-variable] 4041 | ValNodePtr vnp_seqinfo=NULL; | ^~~~~~~~~~~ udvgraph.c:4035:45: warning: variable ‘nLinesDraw’ set but not used [-Wunused-but-set-variable] 4035 | Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw; | ^~~~~~~~~~ udvgraph.c:4035:37: warning: variable ‘nTotRow’ set but not used [-Wunused-but-set-variable] 4035 | Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw; | ^~~~~~~ At top level: udvgraph.c:3921:14: warning: ‘UDV_calc_decalRC’ defined but not used [-Wunused-function] 3921 | static Int4 UDV_calc_decalRC(ValNodePtr ParaG,Int4 ScrollPos, | ^~~~~~~~~~~~~~~~ udvgraph.c:3433:14: warning: ‘UDV_Draw_features_label’ defined but not used [-Wunused-function] 3433 | static void UDV_Draw_features_label(UnDViewerGraphDataPtr GrData, | ^~~~~~~~~~~~~~~~~~~~~~~ udvgraph.c:1298:13: warning: ‘UDV_AutoSelectAllSeq’ defined but not used [-Wunused-function] 1298 | static void UDV_AutoSelectAllSeq(ViewerDialogDataPtr vdp,Boolean bSelect) | ^~~~~~~~~~~~~~~~~~~~ udvgraph.c:971:14: warning: ‘UDV_draw_horz_cursor’ defined but not used [-Wunused-function] 971 | static void UDV_draw_horz_cursor(UnDViewerGraphDataPtr GrData, | ^~~~~~~~~~~~~~~~~~~~ udvgraph.c:948:13: warning: ‘UDV_draw_vert_cursor’ defined but not used [-Wunused-function] 948 | static void UDV_draw_vert_cursor(RecT rcClip,PoinT pos) | ^~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from udvgraph.c:180: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ udvgraph.c: In function ‘UDV_GetCurrentDispRange’: udvgraph.c:638:15: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 638 | *from_bsp=pgp->StartLetter; | ~~~^~~~~~~~~~~~~ udvgraph.c: In function ‘UDV_Draw_features’: udvgraph.c:3203:58: warning: ‘idx6’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3203 | UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y, | ~~~~~~~^~~~~~ udvgraph.c:3203:38: warning: ‘idx5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3203 | UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y, | ~~~~~~~~^~~~~~ udvgraph.c:3196:47: warning: ‘idx4’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3196 | stop2=_min_(pgp->StopLetter,context->ivals[idx4]); | ^ udvgraph.c:3189:58: warning: ‘idx3’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3189 | UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y, | ~~~~~~~^~~~~~ udvgraph.c:3189:38: warning: ‘idx2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3189 | UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y, | ~~~~~~~~^~~~~~ udvgraph.c:3182:49: warning: ‘idx1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3182 | start2=_max_(pgp->StartLetter,context->ivals[idx1]); | ^ In file included from ../include/udviewer.h:225, from udvgraph.c:177: ../include/udvdef.h:187:40: warning: ‘stop_x2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 187 | #define _max_(a,b) ((a)>=(b)?(a):(b)) | ^ udvgraph.c:2803:21: note: ‘stop_x2’ was declared here 2803 | Int2 start_x,stop_x,stop_x2, /*id. but in pixels*/ | ^~~~~~~ udvgraph.c: In function ‘UDV_ClickProc’: udvgraph.c:1461:8: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1461 | UDV_SelectFeatInFeatDlg(vmp,entityID,itemID); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvopen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvopen.c:101: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ udvopen.c: In function ‘UDV_FileOpen’: udvopen.c:875:16: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 875 | ButtoN b,b1,b2; | ^~ udvopen.c:875:11: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 875 | ButtoN b,b1,b2; | ^ udvopen.c: In function ‘UDV_CreateListBioseqDlg’: udvopen.c:1180:9: warning: the address of ‘szName’ will always evaluate as ‘true’ [-Waddress] 1180 | if (szName){ | ^~~~~~ udvopen.c: In function ‘UDV_FOpenCancelProc’: udvopen.c:792:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 792 | UDV_set_PullMenus(&vmp->MainMenu,TRUE); | ^~~~~~~~~~~~~~ udvopen.c: In function ‘UDV_analyze_SEP_for_open’: udvopen.c:325:15: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 325 | vmp->entityID=entityID; | ~~~~~~~~~~~~~^~~~~~~~~ udvopen.c:327:14: warning: ‘dataptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 327 | vmp->dataptr=dataptr; | ~~~~~~~~~~~~^~~~~~~~ udvopen.c: In function ‘UDV_FOpenAcceptProc’: udvopen.c:855:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 855 | UDV_set_PullMenus(&vmp->MainMenu,TRUE); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvpanel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvpanel.c:197: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ udvpanel.c: In function ‘UDV_GotoBtnProc’: udvpanel.c:2080:22: warning: variable ‘old_ivalue’ set but not used [-Wunused-but-set-variable] 2080 | Int4 iValue,old_ivalue,line_num,from_bsp,to_bsp, | ^~~~~~~~~~ udvpanel.c:2079:15: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 2079 | ValNodePtr vnp; | ^~~ udvpanel.c: In function ‘CreateMainControls’: udvpanel.c:2165:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable] 2165 | Int2 cxChar,cyChar,Margins; | ^~~~~~ udvpanel.c: In function ‘UDV_SearchFeatForKey’: udvpanel.c:3478:14: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 3478 | ButtoN b1,b2; | ^~ At top level: udvpanel.c:2773:28: warning: ‘FeaturesListBoxScan’ defined but not used [-Wunused-function] 2773 | static Boolean LIBCALLBACK FeaturesListBoxScan (SeqFeatPtr sfp, | ^~~~~~~~~~~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/udviewer.h:220, from udvpanel.c:197: udvpanel.c: In function ‘InitFeaturesListDlg’: ../include/vibdefns.h:342:19: warning: ‘pop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 342 | #define PopupItem Nlm_PopupItem | ^~~~~~~~~~~~~ udvpanel.c:3194:7: note: ‘pop’ was declared here 3194 | PopuP pop; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotvibrant.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/dotviewer.h:15, from dotvibrant.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dotvibrant.c: In function ‘DOT_DisplayHits’: dotvibrant.c:564:18: warning: variable ‘ycomp’ set but not used [-Wunused-but-set-variable] 564 | Int4 ycomp, xcomp; | ^~~~~ dotvibrant.c: In function ‘DOT_VscrlProc’: dotvibrant.c:918:16: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable] 918 | Int2 visLines, vmargin, hmargin; | ^~~~~~~~ dotvibrant.c: In function ‘DOT_HscrlProc’: dotvibrant.c:972:20: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable] 972 | Int2 dx, visLines, offset, hmargin, vmargin; | ^~~~~~~~ dotvibrant.c: In function ‘DOT_VCrossHairs’: dotvibrant.c:1402:10: warning: unused variable ‘cursor_size’ [-Wunused-variable] 1402 | Int4 cursor_size =15; | ^~~~~~~~~~~ dotvibrant.c: In function ‘DOT_HCrossHairs’: dotvibrant.c:1427:9: warning: unused variable ‘cursor_size’ [-Wunused-variable] 1427 | Int4 cursor_size = 15; | ^~~~~~~~~~~ dotvibrant.c: In function ‘DOT_MoveCrossHairs’: dotvibrant.c:1453:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable] 1453 | DOTSelDataPtr data; | ^~~~ dotvibrant.c:1452:10: warning: unused variable ‘cursor_size’ [-Wunused-variable] 1452 | Int4 cursor_size = 15; | ^~~~~~~~~~~ dotvibrant.c: In function ‘DOT_DrawXAxis’: dotvibrant.c:1532:38: warning: unused variable ‘title’ [-Wunused-variable] 1532 | Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/ | ^~~~~ dotvibrant.c: In function ‘DOT_DrawYAxis’: dotvibrant.c:1642:38: warning: unused variable ‘title’ [-Wunused-variable] 1642 | Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/ | ^~~~~ dotvibrant.c:1641:55: warning: variable ‘Fh_4’ set but not used [-Wunused-but-set-variable] 1641 | Int4 pos, ylen, x, y, scale_pos, i, j, Fh_2,Fh_4; | ^~~~ dotvibrant.c: In function ‘DOT_SVDisplayDiags’: dotvibrant.c:1770:28: warning: variable ‘aln_diag’ set but not used [-Wunused-but-set-variable] 1770 | Int4 diag, aln_diag; | ^~~~~~~~ dotvibrant.c:1770:22: warning: variable ‘diag’ set but not used [-Wunused-but-set-variable] 1770 | Int4 diag, aln_diag; | ^~~~ dotvibrant.c:1766:22: warning: variable ‘width’ set but not used [-Wunused-but-set-variable] 1766 | Int4 width, height; | ^~~~~ dotvibrant.c:1765:31: warning: variable ‘p_HFrom’ set but not used [-Wunused-but-set-variable] 1765 | Int4 p_VFrom, p_HFrom; | ^~~~~~~ dotvibrant.c:1765:22: warning: variable ‘p_VFrom’ set but not used [-Wunused-but-set-variable] 1765 | Int4 p_VFrom, p_HFrom; | ^~~~~~~ dotvibrant.c:1762:28: warning: unused variable ‘cutoff’ [-Wunused-variable] 1762 | Int4 stop, cutoff=0, q_start, s_start, length; | ^~~~~~ dotvibrant.c:1760:34: warning: variable ‘seg3’ set but not used [-Wunused-but-set-variable] 1760 | SegmenT seg1, seg2, seg3, seg4; | ^~~~ dotvibrant.c: In function ‘DOT_FillNewSeqBufs’: dotvibrant.c:2197:19: warning: unused variable ‘alp’ [-Wunused-variable] 2197 | DOTAlignInfoPtr alp=NULL; | ^~~ dotvibrant.c: In function ‘DOT_InitCInfo’: dotvibrant.c:2258:14: warning: unused variable ‘colBuf’ [-Wunused-variable] 2258 | Char colBuf[12]={""}; | ^~~~~~ dotvibrant.c: In function ‘DOT_SVDisplaySequence’: dotvibrant.c:2379:16: warning: variable ‘matrix’ set but not used [-Wunused-but-set-variable] 2379 | Int4Ptr PNTR matrix; | ^~~~~~ dotvibrant.c:2367:14: warning: variable ‘vis_2’ set but not used [-Wunused-but-set-variable] 2367 | Int4 vis_2, buf_len; | ^~~~~ dotvibrant.c:2364:14: warning: unused variable ‘prot_threshold’ [-Wunused-variable] 2364 | Int4 prot_threshold=0, bloc_cntr; | ^~~~~~~~~~~~~~ dotvibrant.c:2350:24: warning: variable ‘mip2’ set but not used [-Wunused-but-set-variable] 2350 | DOTMainDataPtr mip1, mip2; | ^~~~ dotvibrant.c: In function ‘DOT_SVClickProc’: dotvibrant.c:2807:17: warning: unused variable ‘handled’ [-Wunused-variable] 2807 | Int2 handled=0; | ^~~~~~~ dotvibrant.c: In function ‘DOT_ResizeFeatWindow’: dotvibrant.c:3016:63: warning: variable ‘SubjectHeight’ set but not used [-Wunused-but-set-variable] 3016 | Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw; | ^~~~~~~~~~~~~ dotvibrant.c:3016:51: warning: variable ‘QueryHeight’ set but not used [-Wunused-but-set-variable] 3016 | Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw; | ^~~~~~~~~~~ dotvibrant.c:3016:37: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable] 3016 | Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw; | ^~~ dotvibrant.c: In function ‘DOT_ResizeSequenceWindow’: dotvibrant.c:3098:25: warning: variable ‘is_visible2’ set but not used [-Wunused-but-set-variable] 3098 | Boolean is_visible1, is_visible2; | ^~~~~~~~~~~ dotvibrant.c:3098:12: warning: variable ‘is_visible1’ set but not used [-Wunused-but-set-variable] 3098 | Boolean is_visible1, is_visible2; | ^~~~~~~~~~~ dotvibrant.c:3095:51: warning: variable ‘V1Height’ set but not used [-Wunused-but-set-variable] 3095 | Int2 height,width,gap,vsbWidth,in,hsbHeight,V1Height,V2Height, goHeight; | ^~~~~~~~ dotvibrant.c: In function ‘DOT_HideFeatDlg’: dotvibrant.c:3745:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 3745 | ButtoN b; | ^ dotvibrant.c: In function ‘DOT_SVBuildDiagViewer’: dotvibrant.c:4031:18: warning: variable ‘mip’ set but not used [-Wunused-but-set-variable] 4031 | DOTMainDataPtr mip; | ^~~ dotvibrant.c:4029:28: warning: unused variable ‘str2’ [-Wunused-variable] 4029 | Char str1[41]={""}, str2[41]={""}; | ^~~~ dotvibrant.c:4029:13: warning: unused variable ‘str1’ [-Wunused-variable] 4029 | Char str1[41]={""}, str2[41]={""}; | ^~~~ dotvibrant.c:4022:18: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable] 4022 | PrompT pr1, pr2; | ^~~ dotvibrant.c:4022:13: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable] 4022 | PrompT pr1, pr2; | ^~~ dotvibrant.c: In function ‘DOT_UpdateDataRects’: dotvibrant.c:4166:19: warning: variable ‘dy’ set but not used [-Wunused-but-set-variable] 4166 | Int4 comp, dx, dy, xstart, ystart; | ^~ dotvibrant.c:4166:15: warning: variable ‘dx’ set but not used [-Wunused-but-set-variable] 4166 | Int4 comp, dx, dy, xstart, ystart; | ^~ dotvibrant.c: In function ‘DOT_MsgFunc’: dotvibrant.c:4215:17: warning: variable ‘vdp2’ set but not used [-Wunused-but-set-variable] 4215 | DOTVibDataPtr vdp2 = NULL; | ^~~~ dotvibrant.c: In function ‘DOT_ReleaseProc’: dotvibrant.c:4373:32: warning: unused variable ‘yaxis_incr’ [-Wunused-variable] 4373 | Boolean xaxis_incr=TRUE, yaxis_incr=TRUE; | ^~~~~~~~~~ dotvibrant.c:4373:15: warning: unused variable ‘xaxis_incr’ [-Wunused-variable] 4373 | Boolean xaxis_incr=TRUE, yaxis_incr=TRUE; | ^~~~~~~~~~ dotvibrant.c:4371:19: warning: variable ‘alp’ set but not used [-Wunused-but-set-variable] 4371 | DOTAlignInfoPtr alp=NULL; | ^~~ dotvibrant.c:4370:18: warning: variable ‘mip1’ set but not used [-Wunused-but-set-variable] 4370 | DOTMainDataPtr mip1=NULL; | ^~~~ dotvibrant.c: In function ‘DOT_StartDOTPLOT’: dotvibrant.c:4891:23: warning: variable ‘vdp’ set but not used [-Wunused-but-set-variable] 4891 | DOTVibDataPtr vdp; | ^~~ dotvibrant.c: In function ‘DOT_DoZoom’: dotvibrant.c:5106:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable] 5106 | DOTSelDataPtr data; | ^~~~ dotvibrant.c: In function ‘DOT_ZoomProc’: dotvibrant.c:5204:23: warning: variable ‘temport’ set but not used [-Wunused-but-set-variable] 5204 | WindoW temport, w; | ^~~~~~~ dotvibrant.c: In function ‘AlnMgr2GetNextLine’: dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value] 5315 | *n++; | ^~~~ dotvibrant.c: In function ‘DOT_GetAlign’: dotvibrant.c:5332:44: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 5332 | Int4 x1, y1, x2, y2, numlines=0, n=0, i=0; | ^ dotvibrant.c: In function ‘DOT_FillAlignInfoPointer’: dotvibrant.c:5565:16: warning: unused variable ‘i’ [-Wunused-variable] 5565 | Int4 i=0, n=0; | ^ dotvibrant.c: In function ‘DOT_Prob_FillAlignInfoPointer’: dotvibrant.c:5681:16: warning: unused variable ‘i’ [-Wunused-variable] 5681 | Int4 i=0, n=0; | ^ dotvibrant.c:5680:16: warning: unused variable ‘numsaps’ [-Wunused-variable] 5680 | Int4 numsaps = 0, numlines = 0; | ^~~~~~~ dotvibrant.c:5678:37: warning: unused variable ‘sap_tmp’ [-Wunused-variable] 5678 | SeqAlignPtr sap=NULL, salp=NULL, sap_tmp=NULL; | ^~~~~~~ dotvibrant.c: In function ‘DOT_DoBlast’: dotvibrant.c:5918:23: warning: unused variable ‘eval’ [-Wunused-variable] 5918 | Char eval[11]={""}; | ^~~~ dotvibrant.c:5917:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable] 5917 | Boolean is_local; | ^~~~~~~~ dotvibrant.c:5915:23: warning: unused variable ‘entityID’ [-Wunused-variable] 5915 | Uint2 entityID=0; | ^~~~~~~~ dotvibrant.c: In function ‘DOT_CreateWindowDetails’: dotvibrant.c:6214:27: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable] 6214 | PrompT pr1, pr2; | ^~~ dotvibrant.c:6214:22: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable] 6214 | PrompT pr1, pr2; | ^~~ dotvibrant.c:6207:21: warning: variable ‘g1’ set but not used [-Wunused-but-set-variable] 6207 | GrouP g, g1, g2; | ^~ dotvibrant.c: In function ‘DOT_ResizeMainWindow’: dotvibrant.c:6273:35: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable] 6273 | Int2 height, width, in , gap; | ^~~ dotvibrant.c: In function ‘DOT_FindAlignment’: dotvibrant.c:6662:29: warning: unused variable ‘rb_fixed’ [-Wunused-variable] 6662 | Boolean lt_fixed=FALSE, rb_fixed=FALSE; | ^~~~~~~~ dotvibrant.c:6662:13: warning: unused variable ‘lt_fixed’ [-Wunused-variable] 6662 | Boolean lt_fixed=FALSE, rb_fixed=FALSE; | ^~~~~~~~ dotvibrant.c:6661:17: warning: variable ‘data’ set but not used [-Wunused-but-set-variable] 6661 | DOTSelDataPtr data; | ^~~~ dotvibrant.c: In function ‘SCP_CompareOrderOrganizeBioseqs’: dotvibrant.c:6792:25: warning: variable ‘itemID’ set but not used [-Wunused-but-set-variable] 6792 | Uint4 itemID=0; | ^~~~~~ dotvibrant.c: In function ‘SCP_OrganizeAlnsInSet’: dotvibrant.c:6873:21: warning: variable ‘indextype’ set but not used [-Wunused-but-set-variable] 6873 | Int4 indextype; | ^~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/alignmgr2.h:111, from ../include/actutils.h:105, from ../include/dotviewer.h:32, from dotvibrant.c:84: dotvibrant.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/dotviewer.h:32, from dotvibrant.c:84: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ dotvibrant.c:6642:16: warning: ‘DOT_DeselectPrim’ defined but not used [-Wunused-function] 6642 | static Boolean DOT_DeselectPrim (SegmenT seg, PrimitivE prim, Uint2 segID,Uint2 primID, Uint2 primCt, VoidPtr userdata) | ^~~~~~~~~~~~~~~~ dotvibrant.c:6346:13: warning: ‘DOT_NewAnalysis’ defined but not used [-Wunused-function] 6346 | static void DOT_NewAnalysis (ButtoN b) | ^~~~~~~~~~~~~~~ dotvibrant.c:5894:16: warning: ‘DOT_get_eval’ defined but not used [-Wunused-function] 5894 | static FloatHi DOT_get_eval(Int4 exp) | ^~~~~~~~~~~~ dotvibrant.c:5325:16: warning: ‘DOT_GetAlign’ defined but not used [-Wunused-function] 5325 | static Boolean DOT_GetAlign (DOTAlignInfoPtr alp) | ^~~~~~~~~~~~ dotvibrant.c:5281:16: warning: ‘AlnMgr2GetNextLine’ defined but not used [-Wunused-function] 5281 | static Boolean AlnMgr2GetNextLine(SeqAlignPtr sap, AlnMsg2Ptr amp1, AlnMsg2Ptr amp2, Int4Ptr x1, Int4Ptr y1, Int4Ptr x2, Int4Ptr y2, Int4Ptr n) | ^~~~~~~~~~~~~~~~~~ dotvibrant.c:4767:13: warning: ‘DOT_FeatAnalysisProc’ defined but not used [-Wunused-function] 4767 | static void DOT_FeatAnalysisProc(ButtoN b) | ^~~~~~~~~~~~~~~~~~~~ dotvibrant.c:4749:13: warning: ‘DOT_GetInfoProc’ defined but not used [-Wunused-function] 4749 | static void DOT_GetInfoProc (IteM i) | ^~~~~~~~~~~~~~~ dotvibrant.c:4213:25: warning: ‘DOT_MsgFunc’ defined but not used [-Wunused-function] 4213 | static Int2 LIBCALLBACK DOT_MsgFunc (OMMsgStructPtr ommsp) | ^~~~~~~~~~~ dotvibrant.c:3688:13: warning: ‘DOT_HideAcceptProc’ defined but not used [-Wunused-function] 3688 | static void DOT_HideAcceptProc(ButtoN b) | ^~~~~~~~~~~~~~~~~~ dotvibrant.c:3318:13: warning: ‘DOT_AddFeatureToSegment’ defined but not used [-Wunused-function] 3318 | static void DOT_AddFeatureToSegment(SeqMgrFeatContextPtr context, | ^~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2954:13: warning: ‘DOT_SVChangeLabels’ defined but not used [-Wunused-function] 2954 | static void DOT_SVChangeLabels (GrouP g) | ^~~~~~~~~~~~~~~~~~ dotvibrant.c:2760:16: warning: ‘DOT_SVGetDiag’ defined but not used [-Wunused-function] 2760 | static Boolean DOT_SVGetDiag (Uint2 segID, Uint2 primID, VoidPtr userdata) | ^~~~~~~~~~~~~ dotvibrant.c: In function ‘DOT_GetNthSeqFromAlign’: dotvibrant.c:5087:3: warning: ‘spp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5087 | SeqPortFree(spp); | ^~~~~~~~~~~~~~~~ dotvibrant.c: In function ‘DOT_SVPopulateSequenceViewer.part.0’: dotvibrant.c:2611:19: warning: ‘strand2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2611 | DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2380:23: note: ‘strand2’ was declared here 2380 | Uint1 strand1, strand2; | ^~~~~~~ dotvibrant.c:2611:19: warning: ‘strand1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2611 | DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2380:14: note: ‘strand1’ was declared here 2380 | Uint1 strand1, strand2; | ^~~~~~~ dotvibrant.c:2561:45: warning: ‘residue_names’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2561 | sBuf[c]=*residue_names[(int)*s]; | ^ dotvibrant.c:2378:16: note: ‘residue_names’ was declared here 2378 | CharPtr PNTR residue_names; | ^~~~~~~~~~~~~ dotvibrant.c:2611:19: warning: ‘s_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2611 | DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2370:42: note: ‘s_pos’ was declared here 2370 | Int4 hit_start, hit_stop, q_pos, s_pos; | ^~~~~ dotvibrant.c:2611:19: warning: ‘q_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2611 | DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2370:35: note: ‘q_pos’ was declared here 2370 | Int4 hit_start, hit_stop, q_pos, s_pos; | ^~~~~ dotvibrant.c:2504:21: warning: ‘hit_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2504 | hit_stop+=hit_stop/10; | ~~~~~~~~^~~ dotvibrant.c:2370:25: note: ‘hit_stop’ was declared here 2370 | Int4 hit_start, hit_stop, q_pos, s_pos; | ^~~~~~~~ dotvibrant.c:2572:27: warning: ‘hit_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2572 | DOT_HlSeq(sbSeg, rc, margin, i+1, bloc_size, hit_start, hit_stop, Fh,chw_2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2370:14: note: ‘hit_start’ was declared here 2370 | Int4 hit_start, hit_stop, q_pos, s_pos; | ^~~~~~~~~ dotvibrant.c:2503:16: warning: ‘buf_len’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2503 | end=s+buf_len-1; | ^ dotvibrant.c:2367:21: note: ‘buf_len’ was declared here 2367 | Int4 vis_2, buf_len; | ^~~~~~~ dotvibrant.c:2545:18: warning: ‘is_na’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2545 | if (is_na) | ^ dotvibrant.c:2361:27: note: ‘is_na’ was declared here 2361 | Boolean ambig=FALSE, is_na; | ^~~~~ dotvibrant.c:2503:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2503 | end=s+buf_len-1; | ~~~^~~~~~~~~~~~ dotvibrant.c:2357:14: note: ‘s’ was declared here 2357 | Uint1Ptr s; | ^ dotvibrant.c:2356:14: warning: ‘q’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2356 | Uint1Ptr q; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from dlgutil1.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dlgutil1.c: In function ‘IsAuthList’: dlgutil1.c:2962:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 2962 | Int4 len; | ^~~ dlgutil1.c: In function ‘TestIntervalEditor’: dlgutil1.c:5324:20: warning: variable ‘fuzz_to’ set but not used [-Wunused-but-set-variable] 5324 | Int2 fuzz_to; | ^~~~~~~ dlgutil1.c:5323:20: warning: variable ‘fuzz_from’ set but not used [-Wunused-but-set-variable] 5323 | Int2 fuzz_from; | ^~~~~~~~~ dlgutil1.c:5322:41: warning: variable ‘fuzz_before’ set but not used [-Wunused-but-set-variable] 5322 | Boolean isInterval, isPoint, fuzz_before, fuzz_after; | ^~~~~~~~~~~ dlgutil1.c: In function ‘DbtagDialogToDbtagPtr’: dlgutil1.c:7254:16: warning: unused variable ‘val’ [-Wunused-variable] 7254 | long int val; | ^~~ dlgutil1.c:7250:16: warning: unused variable ‘ptr’ [-Wunused-variable] 7250 | CharPtr ptr; | ^~~ dlgutil1.c:7247:16: warning: unused variable ‘num_digits’ [-Wunused-variable] 7247 | Int2 num_digits; | ^~~~~~~~~~ dlgutil1.c:7246:16: warning: unused variable ‘notallzero’ [-Wunused-variable] 7246 | Boolean notallzero; | ^~~~~~~~~~ dlgutil1.c:7243:16: warning: unused variable ‘leadingzero’ [-Wunused-variable] 7243 | Boolean leadingzero; | ^~~~~~~~~~~ dlgutil1.c:7238:16: warning: unused variable ‘alldigits’ [-Wunused-variable] 7238 | Boolean alldigits; | ^~~~~~~~~ dlgutil1.c: In function ‘CreateStandardEditMenu’: dlgutil1.c:9427:8: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 9427 | IteM i; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from dlgutil1.c:55: dlgutil1.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ dlgutil1.c:8603:25: warning: ‘GetNthNameValuePair’ defined but not used [-Wunused-function] 8603 | static NameValuePairPtr GetNthNameValuePair (Int4 n, ValNodePtr list) | ^~~~~~~~~~~~~~~~~~~ dlgutil1.c:8051:16: warning: ‘ParseSpecimenVoucherOk’ defined but not used [-Wunused-function] 8051 | static Boolean ParseSpecimenVoucherOk (CharPtr str) | ^~~~~~~~~~~~~~~~~~~~~~ dlgutil1.c:1293:13: warning: ‘GbqualsToVisStringDialog’ defined but not used [-Wunused-function] 1293 | static void GbqualsToVisStringDialog (SeqFeatPtr sfp, DialoG d, CharPtr qual) | ^~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from dlgutil2.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dlgutil2.c: In function ‘CreateImportFields’: dlgutil2.c:1401:19: warning: variable ‘is_gap’ set but not used [-Wunused-but-set-variable] 1401 | Boolean is_gap = FALSE; | ^~~~~~ dlgutil2.c: In function ‘UpdateTableDisplayDialogScrollBars’: dlgutil2.c:3552:11: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] 3552 | Int4 x, y; | ^ dlgutil2.c:3552:8: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] 3552 | Int4 x, y; | ^ dlgutil2.c: In function ‘GetTableDisplayCell’: dlgutil2.c:3951:8: warning: variable ‘start_row’ set but not used [-Wunused-but-set-variable] 3951 | Int4 start_row, start_col; | ^~~~~~~~~ dlgutil2.c: In function ‘NewCreateInferenceDialog’: dlgutil2.c:7633:19: warning: variable ‘fnt’ set but not used [-Wunused-but-set-variable] 7633 | FonT fnt; | ^~~ dlgutil2.c: In function ‘ClickableListOnKey’: dlgutil2.c:10479:20: warning: variable ‘clp’ set but not used [-Wunused-but-set-variable] 10479 | ClickableListPtr clp; | ^~~ dlgutil2.c: In function ‘GetSelectedClickableListText’: dlgutil2.c:11151:36: warning: variable ‘char_offset’ set but not used [-Wunused-but-set-variable] 11151 | Int2 item, row, col, char_offset; | ^~~~~~~~~~~ dlgutil2.c: In function ‘AutomatchFeatures’: dlgutil2.c:14210:36: warning: variable ‘s3’ set but not used [-Wunused-but-set-variable] 14210 | SeqIntPtr s1, s2, s3; | ^~ At top level: dlgutil2.c:12342:16: warning: ‘ParseMultiListQualOk’ defined but not used [-Wunused-function] 12342 | static Boolean ParseMultiListQualOk (CharPtr val) | ^~~~~~~~~~~~~~~~~~~~ dlgutil2.c:10336:13: warning: ‘ClickClickableListItem’ defined but not used [-Wunused-function] 10336 | static void ClickClickableListItem (DoC d, PoinT pt) | ^~~~~~~~~~~~~~~~~~~~~~ dlgutil2.c:10316:13: warning: ‘DrawClickableListItem’ defined but not used [-Wunused-function] 10316 | static void DrawClickableListItem (DoC d, RectPtr r, Int2 item, Int2 firstLine) | ^~~~~~~~~~~~~~~~~~~~~ dlgutil2.c:8854:13: warning: ‘GetCategoryNumFromName’ defined but not used [-Wunused-function] 8854 | static Int4 GetCategoryNumFromName (CharPtr category) | ^~~~~~~~~~~~~~~~~~~~~~ dlgutil2.c:1676:16: warning: ‘GetNameForFeature’ defined but not used [-Wunused-function] 1676 | static CharPtr GetNameForFeature (SeqFeatPtr sfp) | ^~~~~~~~~~~~~~~~~ dlgutil2.c: In function ‘PopulateDayPopup’: dlgutil2.c:11438:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 11438 | sprintf (day, "%d", i); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from dlgutil2.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2trmlst.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from e2trmlst.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ e2trmlst.c: In function ‘ReadAFew’: e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value] 2230 | for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2docsum.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from e2docsum.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ e2docsum.c: In function ‘FormatCdsSeq’: e2docsum.c:1523:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable] 1523 | SeqFeatPtr gene = NULL; | ^~~~ e2docsum.c: In function ‘FetchSequence’: e2docsum.c:1591:16: warning: variable ‘currDbName’ set but not used [-Wunused-but-set-variable] 1591 | CharPtr currDbName; | ^~~~~~~~~~ e2docsum.c:1580:16: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable] 1580 | Uint1 group_segs = 0; | ^~~~~~~~~~ e2docsum.c: In function ‘SaveDocsumProject’: e2docsum.c:3606:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable] 3606 | SummFormPtr sfp; | ^~~ e2docsum.c: In function ‘RetrieveGeneration’: e2docsum.c:4135:19: warning: variable ‘e2ip’ set but not used [-Wunused-but-set-variable] 4135 | Entrez2InfoPtr e2ip; | ^~~~ e2docsum.c: In function ‘SetupMenus’: e2docsum.c:4849:16: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 4849 | ChoicE c; | ^ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/bspview.h:48, from e2docsum.c:53: e2docsum.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strucapi.h:52, from e2docsum.c:62: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ e2docsum.c: In function ‘LaunchStructureViewer’: e2docsum.c:2981:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2981 | system (cmmd); | ^~~~~~~~~~~~~ e2docsum.c: In function ‘LaunchSequin’: e2docsum.c:2838:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2838 | system (cmmd); | ^~~~~~~~~~~~~ At top level: e2docsum.c:2883:13: warning: ‘GetBiostrucMaxModels’ defined but not used [-Wunused-function] 2883 | static Int4 GetBiostrucMaxModels (void) | ^~~~~~~~~~~~~~~~~~~~ e2docsum.c:2850:13: warning: ‘GetBiostrucComplexity’ defined but not used [-Wunused-function] 2850 | static Int4 GetBiostrucComplexity (void) | ^~~~~~~~~~~~~~~~~~~~~ e2docsum.c:2154:20: warning: ‘cddDocProcs’ defined but not used [-Wunused-variable] 2154 | static DocPrntProc cddDocProcs [] = { Query_FetchDocSum, Query_FetchFields, FetchUid, NULL }; | ^~~~~~~~~~~ e2docsum.c: In function ‘LaunchStructureViewer’: e2docsum.c:2980:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=] 2980 | sprintf (cmmd, "Cn3D %s &", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from e2docsum.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ e2docsum.c: In function ‘LaunchSequin.constprop’: e2docsum.c:2837:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4084 [-Wformat-overflow=] 2837 | sprintf (cmmd, "sequin -x < %s &", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from e2docsum.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2graphic.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2graphic.c: In function ‘ParseFilterItem’: asn2graphic.c:1191:21: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 1191 | Int2 i, j; | ^ asn2graphic.c: In function ‘GeneProductsLayoutInternal’: asn2graphic.c:3730:36: warning: variable ‘featureStart’ set but not used [-Wunused-but-set-variable] 3730 | Int4 newLeft, featureStart, rowMaxRight; | ^~~~~~~~~~~~ asn2graphic.c: In function ‘ScaleSntDrawProc’: asn2graphic.c:4402:28: warning: variable ‘r’ set but not used [-Wunused-but-set-variable] 4402 | RecT r; | ^ asn2graphic.c: In function ‘GphSentProc’: asn2graphic.c:4997:16: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable] 4997 | Int4 scaleY; | ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2graphic.c:46: asn2graphic.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2graphic.c: In function ‘ProcessRows’: asn2graphic.c:4362:13: warning: ‘SegmentTreeBot’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4362 | if (! EnsureFeatureHasSegment (FPSP, featdeftype, SegmentTreeBot)) return 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2graphic.h:46, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: ../include/picture.h:499:23: warning: ‘SegmentTreeMid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 499 | #define CreateSegment Nlm_CreateSegment | ^~~~~~~~~~~~~~~~~ asn2graphic.c:4278:27: note: ‘SegmentTreeMid’ was declared here 4278 | SegmenT SegmentTreeMid; | ^~~~~~~~~~~~~~ In file included from ../include/asn2graphic.h:46, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: ../include/picture.h:499:23: warning: ‘SegmentTreeTop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 499 | #define CreateSegment Nlm_CreateSegment | ^~~~~~~~~~~~~~~~~ asn2graphic.c:4277:27: note: ‘SegmentTreeTop’ was declared here 4277 | SegmenT SegmentTreeTop; | ^~~~~~~~~~~~~~ asn2graphic.c: In function ‘ParseConfigFile’: asn2graphic.c:1198:27: warning: ‘%s’ directive writing up to 127 bytes into a region of size 120 [-Wformat-overflow=] 1198 | sprintf (sect, "filters.%s", filterItemName); | ^~ ...... 1500 | FIP = ParseFilterItem (buf, defaultRowPadding, defaultGroupPadding, defaultLayout, VCP); | ~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 136 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:946:21: warning: ‘.master’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 946 | sprintf (sect, "%s.master", appearanceNameInFile); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1006:29: warning: ‘.bioseq’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 1006 | sprintf (outputBuffer, "%s.bioseq", appearanceNameInFile); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1008:29: warning: ‘.imp’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 1008 | sprintf (outputBuffer, "%s.imp", appearanceNameInFile); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1011:31: warning: ‘.import’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 1011 | sprintf (outputBuffer, "%s.import", appearanceNameInFile); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1021:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1021 | sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i)); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 129) into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1021:32: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 127 [-Wformat-overflow=] 707 | featName = "graph"; | ~~~~~~~ ...... 1021 | sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i)); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 134 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1021:32: warning: ‘%s’ directive writing between 5 and 7 bytes into a region of size between 0 and 127 [-Wformat-overflow=] 1021 | sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i)); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 136 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF medview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/medview.h:48, from medview.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ medview.c: In function ‘PrintMedlineViewForm’: medview.c:588:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 588 | system (cmmd); | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bspview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from bspview.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from gbfview.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gbfview.c: In function ‘RelModeFailText’: gbfview.c:1004:22: warning: variable ‘hasPubs’ set but not used [-Wunused-but-set-variable] 1004 | Boolean hasPubs; | ^~~~~~~ gbfview.c: In function ‘PopulateFlatFile’: gbfview.c:1292:22: warning: variable ‘doColors’ set but not used [-Wunused-but-set-variable] 1292 | Boolean doColors; | ^~~~~~~~ gbfview.c: In function ‘PopulateFasta’: gbfview.c:1717:33: warning: left-hand operand of comma expression has no effect [-Wunused-value] 1717 | if (ISA_na (bsp->mol)) {TRUE, | ^ gbfview.c:1649:20: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable] 1649 | Uint1 group_segs; | ^~~~~~~~~~ gbfview.c: In function ‘PopulateAsnOrXML’: gbfview.c:1972:16: warning: variable ‘lookupFar’ set but not used [-Wunused-but-set-variable] 1972 | Boolean lookupFar = FALSE; | ^~~~~~~~~ gbfview.c:1971:16: warning: variable ‘lockFar’ set but not used [-Wunused-but-set-variable] 1971 | Boolean lockFar = FALSE; | ^~~~~~~ gbfview.c: In function ‘PrintFlatFileFastaOrAsn’: gbfview.c:2494:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2494 | system (cmmd); | ^~~~~~~~~~~~~ gbfview.c: In function ‘ReleaseIcon’: gbfview.c:667:21: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 667 | system (cmmd); | ^~~~~~~~~~~~~ At top level: gbfview.c:1234:13: warning: ‘LookForFarProds’ defined but not used [-Wunused-function] 1234 | static void LookForFarProds ( | ^~~~~~~~~~~~~~~ gbfview.c:1215:13: warning: ‘LookForFarBsp’ defined but not used [-Wunused-function] 1215 | static void LookForFarBsp ( | ^~~~~~~~~~~~~ gbfview.c:944:13: warning: ‘LookForPubs’ defined but not used [-Wunused-function] 944 | static void LookForPubs (BioseqPtr bsp, Pointer userdata) | ^~~~~~~~~~~ gbfview.c:289:16: warning: ‘ColorIcon’ defined but not used [-Wunused-function] 289 | static Boolean ColorIcon ( | ^~~~~~~~~ gbfview.c: In function ‘ReleaseIcon’: gbfview.c:666:42: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=] 666 | sprintf (cmmd, "open %s", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from gbfview.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from gphview.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gphview.c: In function ‘ReleaseAlignment’: gphview.c:1306:18: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable] 1306 | SeqLocPtr slp; | ^~~ gphview.c: In function ‘DrawAlignOnAllSequences’: gphview.c:1391:10: warning: variable ‘vn’ set but not used [-Wunused-but-set-variable] 1391 | ValNode vn; | ^~ gphview.c: In function ‘ReleaseDesktop’: gphview.c:1836:18: warning: variable ‘seg’ set but not used [-Wunused-but-set-variable] 1836 | SegmenT seg; | ^~~ gphview.c: In function ‘AutoScrollGeneName’: gphview.c:2100:21: warning: variable ‘num’ set but not used [-Wunused-but-set-variable] 2100 | Int2 num; | ^~~ gphview.c: In function ‘DisplayGeneChoiceWindow’: gphview.c:2426:22: warning: variable ‘p’ set but not used [-Wunused-but-set-variable] 2426 | PrompT p; | ^ gphview.c: In function ‘PrintGraphical’: gphview.c:3268:14: warning: unused variable ‘ans’ [-Wunused-variable] 3268 | MsgAnswer ans; | ^~~ gphview.c: In function ‘PopulateAsn2GphGraphic’: gphview.c:3868:16: warning: variable ‘min’ set but not used [-Wunused-but-set-variable] 3868 | Int4 min; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphdraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from gphdraw.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gphdraw.c: In function ‘GraphSentProc’: gphdraw.c:195:18: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable] 195 | Int4 scaleY; | ^~~~~~ gphdraw.c: In function ‘DrawGraphToPanel’: gphdraw.c:453:27: warning: variable ‘xp’ set but not used [-Wunused-but-set-variable] 453 | Int4Ptr xpoints, xp; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gxydraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from gxydraw.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gxydraw.c: In function ‘DotXYPlot’: gxydraw.c:259:19: warning: ‘xaxiscount’ may be used uninitialized in this function [-Wmaybe-uninitialized] 259 | gsp->xaxiscount = xaxiscount; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ gxydraw.c:182:19: note: ‘xaxiscount’ was declared here 182 | Int4 xaxiscount, yaxiscount; | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gtrdraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from gtrdraw.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpanel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqpanel.c: In function ‘FillFeatureInfo’: seqpanel.c:427:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable] 427 | Int4 j, start, stop; | ^~~~ seqpanel.c:427:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 427 | Int4 j, start, stop; | ^~~~~ seqpanel.c: In function ‘DrawFeatureCodonLines’: seqpanel.c:1897:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 1897 | Char tmp[2]; | ^~~ seqpanel.c: In function ‘DrawFeature’: seqpanel.c:2127:21: warning: variable ‘prot_len’ set but not used [-Wunused-but-set-variable] 2127 | Int4 prot_len; | ^~~~~~~~ seqpanel.c: In function ‘GetSeqChapterFeatureInfo’: seqpanel.c:3136:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable] 3136 | Int4 j, start, stop; | ^~~~ seqpanel.c:3136:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 3136 | Int4 j, start, stop; | ^~~~~ seqpanel.c: In function ‘onSeqEdVScrollBarSeqPanel’: seqpanel.c:3406:17: warning: variable ‘totallines’ set but not used [-Wunused-but-set-variable] 3406 | Int4 totallines; | ^~~~~~~~~~ seqpanel.c: In function ‘PrintFeature’: seqpanel.c:3812:28: warning: variable ‘fRight’ set but not used [-Wunused-but-set-variable] 3812 | Int4 fLeft, fRight, swap; | ^~~~~~ seqpanel.c:3812:21: warning: variable ‘fLeft’ set but not used [-Wunused-but-set-variable] 3812 | Int4 fLeft, fRight, swap; | ^~~~~ seqpanel.c: In function ‘PrintTranslatedFrame’: seqpanel.c:3966:17: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 3966 | Char tmp[2]; | ^~~ seqpanel.c: In function ‘ExportSequenceText’: seqpanel.c:4372:44: warning: pointer targets in passing argument 1 of ‘complement_string’ differ in signedness [-Wpointer-sign] 4372 | complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET); | ^ | | | Nlm_Uint1Ptr {aka unsigned char *} In file included from ../include/alignmgr2.h:112, from seqpanel.c:39: ../include/salutil.h:78:47: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1Ptr’ {aka ‘unsigned char *’} 78 | NLM_EXTERN CharPtr complement_string (CharPtr str); seqpanel.c:4236:17: warning: variable ‘curr_para_strings’ set but not used [-Wunused-but-set-variable] 4236 | ValNodePtr curr_para_strings = NULL; | ^~~~~~~~~~~~~~~~~ seqpanel.c:4229:17: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable] 4229 | Uint1Ptr buf; | ^~~ seqpanel.c: In function ‘SeqEdOnClick’: seqpanel.c:4946:21: warning: variable ‘direction’ set but not used [-Wunused-but-set-variable] 4946 | Int4 direction; | ^~~~~~~~~ seqpanel.c: In function ‘SeqAlnOnDrag’: seqpanel.c:5685:34: warning: variable ‘is_ctrl’ set but not used [-Wunused-but-set-variable] 5685 | Boolean is_double_click, is_ctrl; | ^~~~~~~ seqpanel.c:5685:17: warning: variable ‘is_double_click’ set but not used [-Wunused-but-set-variable] 5685 | Boolean is_double_click, is_ctrl; | ^~~~~~~~~~~~~~~ seqpanel.c: In function ‘ResizeSeqEdView’: seqpanel.c:5760:8: warning: variable ‘sequence_pos’ set but not used [-Wunused-but-set-variable] 5760 | Int4 sequence_pos = 0; | ^~~~~~~~~~~~ seqpanel.c:5755:8: warning: variable ‘height’ set but not used [-Wunused-but-set-variable] 5755 | Int4 height, width; | ^~~~~~ seqpanel.c: In function ‘WriteAlignmentInterleaveToFileEx’: seqpanel.c:8665:22: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types] 8665 | fputs (fp, printed_line); | ^~ | | | FILE * In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/stdio.h:626:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’ 626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream); | ~~~~~~~~~~~~~~~~~~~~~~~^~~ seqpanel.c:8665:26: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types] 8665 | fputs (fp, printed_line); | ^~~~~~~~~~~~ | | | Nlm_CharPtr {aka char *} In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/stdio.h:626:64: note: expected ‘FILE * restrict’ but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’} 626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream); | ~~~~~~~~~~~~~~~~~^~~~~~~~ seqpanel.c: In function ‘WriteAlignmentContiguousToFile’: seqpanel.c:8761:20: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types] 8761 | fputs (fp, printed_line); | ^~ | | | FILE * In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/stdio.h:626:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’ 626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream); | ~~~~~~~~~~~~~~~~~~~~~~~^~~ seqpanel.c:8761:24: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types] 8761 | fputs (fp, printed_line); | ^~~~~~~~~~~~ | | | Nlm_CharPtr {aka char *} In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/stdio.h:626:64: note: expected ‘FILE * restrict’ but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’} 626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream); | ~~~~~~~~~~~~~~~~~^~~~~~~~ seqpanel.c: In function ‘ReverseSequenceStrandsInAlignment’: seqpanel.c:9008:17: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 9008 | SeqEntryPtr sep; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from seqpanel.c:39: seqpanel.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ seqpanel.c:1171:16: warning: ‘GetAlignmentColumnPercentIDsForAlignmentSection’ defined but not used [-Wunused-function] 1171 | static double *GetAlignmentColumnPercentIDsForAlignmentSection (BioseqViewPtr bvp, Int4 line, Int4 aln_idx) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: seqpanel.c: In function ‘SeqEdFindPatternDialog’: ../include/vibdefns.h:535:22: warning: ‘g1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 535 | #define AlignObjects Nlm_AlignObjects | ^~~~~~~~~~~~~~~~ seqpanel.c:7632:25: note: ‘g1’ was declared here 7632 | GrouP h, g1, g2; | ^~ In file included from ../include/ncbi.h:62, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: seqpanel.c: In function ‘PrintFeature’: ../include/ncbistr.h:331:19: warning: ‘str_prot’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ seqpanel.c:3810:21: note: ‘str_prot’ was declared here 3810 | CharPtr str_prot; | ^~~~~~~~ seqpanel.c: In function ‘SeqEdExportProc’: seqpanel.c:4329:13: warning: ‘seq_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4329 | SeqEdPrintTextLineToFile ((CharPtr)file_line, from, to, seq_pos, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqpanel.c:4233:17: note: ‘seq_pos’ was declared here 4233 | Int4 seq_pos; | ^~~~~~~ seqpanel.c: In function ‘onDrawSeqPanel’: seqpanel.c:1301:24: warning: ‘alnbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1301 | MemCpy(buf, alnbuf + from, len); | ~~~~~~~^~~~~~ seqpanel.c:2466:33: note: ‘alnbuf’ was declared here 2466 | Uint1Ptr buf, seqbuf, alnbuf; | ^~~~~~ seqpanel.c:1252:3: warning: ‘seqbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1252 | AlignmentIntervalToString (tmp_salp, row, start, stop, bvp->TargetRow, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | bvp->viewWholeEntity, seqbuf, alnbuf, &alnbuf_len, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | bvp->showAlnSubstitutions); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ seqpanel.c:2466:25: note: ‘seqbuf’ was declared here 2466 | Uint1Ptr buf, seqbuf, alnbuf; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingengraph.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/ingengraph.h:52, from ingengraph.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ingengraph.c: In function ‘Ing_BigEncodeIdxFeat’: ingengraph.c:262:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 262 | return *((Uint8Ptr) index_g); | ~^~~~~~~~~~~~~~~~~~~ ingengraph.c: In function ‘Ing_AddOneAlignToOverviewPage’: ingengraph.c:355:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 355 | else | ^~~~ ingengraph.c:357:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 357 | prim = AddRectangle(seg, start, (row)*(-20), stop, (row)*(-20)+j, NO_ARROW, FALSE,0); | ^~~~ ingengraph.c:347:13: warning: unused variable ‘bsp’ [-Wunused-variable] 347 | BioseqPtr bsp=NULL; | ^~~ ingengraph.c: In function ‘Ing_AddAlignsToOverviewPage’: ingengraph.c:372:18: warning: unused variable ‘buf’ [-Wunused-variable] 372 | Char buf[41]={""}; | ^~~ ingengraph.c:367:18: warning: variable ‘NewLine’ set but not used [-Wunused-but-set-variable] 367 | Boolean NewLine=FALSE; | ^~~~~~~ ingengraph.c: In function ‘Ing_DrawOverviewPage’: ingengraph.c:492:14: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 492 | Int4 offset; | ^~~~~~ In file included from ../include/vibrant.h:130, from ../include/ingengraph.h:54, from ingengraph.c:45: ../include/vibdefns.h:468:17: warning: unused variable ‘Nlm_Visible’ [-Wunused-variable] 468 | #define Visible Nlm_Visible | ^~~~~~~~~~~ ingengraph.c:488:14: note: in expansion of macro ‘Visible’ 488 | Boolean Visible=FALSE; | ^~~~~~~ ingengraph.c: In function ‘Ing_PopOverviewPage’: ingengraph.c:715:16: warning: variable ‘margin’ set but not used [-Wunused-but-set-variable] 715 | Int4 margin, len; | ^~~~~~ ingengraph.c:714:16: warning: unused variable ‘buf’ [-Wunused-variable] 714 | Char buf[50]={""}; | ^~~ ingengraph.c:708:16: warning: unused variable ‘sanp’ [-Wunused-variable] 708 | SeqAnnotPtr sanp=NULL; | ^~~~ ingengraph.c: In function ‘Ing_AddAlignsToDetailedPage’: ingengraph.c:1097:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1097 | if ((start - offset - (label_len - feat_len)/2)<0) | ^~ ingengraph.c:1099:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1099 | if (bOver_the_edge) | ^~ ingengraph.c: In function ‘Ing_PopDetailedPage’: ingengraph.c:1437:16: warning: variable ‘CurrentSeg’ set but not used [-Wunused-but-set-variable] 1437 | SegmenT CurrentSeg=NULL; | ^~~~~~~~~~ ingengraph.c: In function ‘Ing_ExploreSegments’: ingengraph.c:1829:22: warning: unused variable ‘isDraft’ [-Wunused-variable] 1829 | Boolean isDraft = FALSE; | ^~~~~~~ ingengraph.c:1827:22: warning: unused variable ‘vnp’ [-Wunused-variable] 1827 | ValNodePtr vnp = NULL; | ^~~ ingengraph.c:1826:22: warning: unused variable ‘gbp’ [-Wunused-variable] 1826 | GBBlockPtr gbp = NULL; | ^~~ ingengraph.c:1824:33: warning: variable ‘black’ set but not used [-Wunused-but-set-variable] 1824 | Uint1 orange[3], black[3]; | ^~~~~ ingengraph.c:1823:33: warning: variable ‘lime’ set but not used [-Wunused-but-set-variable] 1823 | Uint1 indigo[3], lime[3]; | ^~~~ ingengraph.c:1823:22: warning: variable ‘indigo’ set but not used [-Wunused-but-set-variable] 1823 | Uint1 indigo[3], lime[3]; | ^~~~~~ ingengraph.c: In function ‘Ing_AddGCRect’: ingengraph.c:1933:17: warning: variable ‘comp2’ set but not used [-Wunused-but-set-variable] 1933 | FloatHi comp2, comp_prev; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/ingengraph.h:63, from ingengraph.c:45: ingengraph.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ ingengraph.c:71:13: warning: ‘Ing_GetNamesZoomedVal’ declared ‘static’ but never defined [-Wunused-function] 71 | static void Ing_GetNamesZoomedVal(VieweR vNames,Int4Ptr from, Int4Ptr to, | ^~~~~~~~~~~~~~~~~~~~~ ingengraph.c:602:28: warning: ‘Ing_CollectFeatures1’ defined but not used [-Wunused-function] 602 | static Boolean LIBCALLBACK Ing_CollectFeatures1(SeqFeatPtr sfp, SeqMgrFeatContextPtr sfc) | ^~~~~~~~~~~~~~~~~~~~ ingengraph.c:583:24: warning: ‘Ing_SortByChoice’ defined but not used [-Wunused-function] 583 | static int LIBCALLBACK Ing_SortByChoice (VoidPtr ptr1, VoidPtr ptr2) | ^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenext.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ingenext.c: In function ‘Ing_KeepTheBestAlignments’: ingenext.c:167:20: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable] 167 | AMAlignIndex2Ptr amaip = NULL; | ^~~~~ ingenext.c: In function ‘Ing_HandleQBlastResults’: ingenext.c:272:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 272 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ^~~~~~~ ingenext.c: In function ‘Ing_HandleResults’: ingenext.c:535:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 535 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ^~~~~~~ ingenext.c: In function ‘Ing_AccepttRNAargsProc’: ingenext.c:739:18: warning: unused variable ‘paramlist’ [-Wunused-variable] 739 | ValNodePtr paramlist = NULL; | ^~~~~~~~~ ingenext.c: In function ‘Ing_tRNAscanProc’: ingenext.c:915:22: warning: unused variable ‘moveMe’ [-Wunused-variable] 915 | ValNodePtr moveMe = NULL; | ^~~~~~ ingenext.c:906:22: warning: unused variable ‘first’ [-Wunused-variable] 906 | TexT first = NULL; | ^~~~~ ingenext.c:902:22: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 902 | ButtoN b; | ^ ingenext.c:896:17: warning: unused variable ‘args’ [-Wunused-variable] 896 | CharPtr args = NULL; | ^~~~ ingenext.c: In function ‘Ing_ReadtRNAConfigFile’: ingenext.c:1125:15: warning: variable ‘demomode’ set but not used [-Wunused-but-set-variable] 1125 | Boolean demomode = FALSE; | ^~~~~~~~ ingenext.c: In function ‘Ing_DoBlast2Seqs’: ingenext.c:1312:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable] 1312 | Boolean is_local, first_bsp=TRUE; | ^~~~~~~~ ingenext.c: In function ‘Ing_CreateDotMatrixForm’: ingenext.c:1834:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1834 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ^~~~~~~ ingenext.c: In function ‘Ing_RunSpidey’: ingenext.c:1994:20: warning: unused variable ‘sanp’ [-Wunused-variable] 1994 | SeqAnnotPtr sanp = NULL; | ^~~~ ingenext.c:1993:20: warning: unused variable ‘spidp_next’ [-Wunused-variable] 1993 | SPI_mRNAPtr spidp_next = NULL; | ^~~~~~~~~~ ingenext.c:1992:20: warning: unused variable ‘spidp_head’ [-Wunused-variable] 1992 | SPI_mRNAPtr spidp_head = NULL; | ^~~~~~~~~~ ingenext.c: In function ‘Ing_ReadmRNAs_ext’: ingenext.c:2025:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2025 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ^~~~~~~ ingenext.c: In function ‘Ing_DeleteInsertInGenomic’: ingenext.c:2522:16: warning: unused variable ‘newsegs’ [-Wunused-variable] 2522 | Int2 newsegs = 0, offset = 0; | ^~~~~~~ ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’: ingenext.c:2777:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2777 | if (!All) | ^~ ingenext.c:2781:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2781 | SeqLocReplace(msip, mmis, mmis, mstrand, gsip, gmis, gmis, gstrand); | ^~~~~~~~~~~~~ ingenext.c:2615:21: warning: unused variable ‘str’ [-Wunused-variable] 2615 | Char str[200] = {""}; | ^~~ ingenext.c:2612:22: warning: unused variable ‘amaip’ [-Wunused-variable] 2612 | AMAlignIndex2Ptr amaip = NULL; | ^~~~~ ingenext.c: In function ‘Ing_MismatchProc’: ingenext.c:3025:15: warning: unused variable ‘sip’ [-Wunused-variable] 3025 | SeqIdPtr sip = NULL; | ^~~ ingenext.c: In function ‘Ing_PrintSpideyReport’: ingenext.c:3471:27: warning: variable ‘gmis’ set but not used [-Wunused-but-set-variable] 3471 | Int4 mmis, gmis, miscount = 0; | ^~~~ ingenext.c: In function ‘Ing_PrintBlastReport’: ingenext.c:3853:18: warning: unused variable ‘more’ [-Wunused-variable] 3853 | Boolean more = FALSE; | ^~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ../include/ingenext.h:53, from ingenext.c:46: ../include/vibdefns.h:652:16: warning: variable ‘Nlm_DkGray’ set but not used [-Wunused-but-set-variable] 652 | #define DkGray Nlm_DkGray | ^~~~~~~~~~ ingenext.c:3850:18: note: in expansion of macro ‘DkGray’ 3850 | Uint1 DkGray[3]; | ^~~~~~ ingenext.c: In function ‘Ing_PopulateReport’: ingenext.c:4328:20: warning: unused variable ‘sip’ [-Wunused-variable] 4328 | SeqIdPtr sip=NULL; | ^~~ ingenext.c:4324:20: warning: unused variable ‘temp’ [-Wunused-variable] 4324 | CharPtr temp = NULL; | ^~~~ ingenext.c: In function ‘Ing_ResizeReportWindow’: ingenext.c:4484:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable] 4484 | BaR hsb; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/ingenwin.h:60, from ../include/ingenext.h:53, from ingenext.c:46: ingenext.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:135, from ../include/ingenwin.h:62, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function] 180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function] 181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function] 182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function] 199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function] 200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ingenext.c:130:13: warning: ‘querytimercount’ defined but not used [-Wunused-variable] 130 | static Int4 querytimercount = 0; | ^~~~~~~~~~~~~~~ ingenext.c:129:13: warning: ‘querytimerlimit’ defined but not used [-Wunused-variable] 129 | static Int4 querytimerlimit = 100; | ^~~~~~~~~~~~~~~ ingenext.c:59:28: warning: ‘Ing_BlastCallback’ defined but not used [-Wunused-function] 59 | static Boolean LIBCALLBACK Ing_BlastCallback (BlastResponse *brp, | ^~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from ../include/ingenwin.h:62, from ../include/ingenext.h:53, from ingenext.c:46: ../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable] 229 | static AsnModulePtr amp = ampx; | ^~~ ../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable] 228 | static AsnTypePtr at = atx; | ^~ ../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable] 227 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "blstspc.h23"; | ^~~~~~~~~~~ ingenext.c: In function ‘Ing_DoBlast2Seqs’: ingenext.c:1457:17: warning: ‘e_head’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1457 | e_tmp->next=e_head; | ~~~~~~~~~~~^~~~~~~ ingenext.c: In function ‘Ing_MismatchProc’: ingenext.c:3170:32: warning: ‘gstart’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3170 | gstart = start + (stop - gstart); | ~~~~~~^~~~~~~~~ ingenext.c:3206:23: warning: ‘mstart’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3206 | else if (mstart == R1 || mstart == R2 || mstart == R3){ | ~~~~~~~^~~~~ ingenext.c: In function ‘Ing_AccepttRNAargsProc’: ingenext.c:780:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 780 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c:794:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 794 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’: ingenext.c:2651:7: warning: ‘nmismatches’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2651 | for (j = 0; j < nmismatches; j++){ | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenwin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ingenwin.c: In function ‘Ing_PopulateDetailedPage’: ingenwin.c:134:22: warning: unused variable ‘bSelected’ [-Wunused-variable] 134 | Boolean bSelected = FALSE; | ^~~~~~~~~ ingenwin.c: In function ‘Ing_DoRange’: ingenwin.c:394:22: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable] 394 | BioseqPtr bsp; | ^~~ ingenwin.c: In function ‘Ing_PopulateCpG’: ingenwin.c:576:19: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable] 576 | Int2 cxChar, nchars; | ^~~~~~ ingenwin.c: In function ‘Ing_ResizeCpGWindow’: ingenwin.c:642:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable] 642 | BaR hsb; | ^~~ ingenwin.c: In function ‘Ing_PopulateMotif’: ingenwin.c:718:26: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable] 718 | Int2 cxChar, nchars; | ^~~~~~ ingenwin.c:717:24: warning: variable ‘swidth’ set but not used [-Wunused-but-set-variable] 717 | Int4 slen, swidth; | ^~~~~~ ingenwin.c:717:18: warning: variable ‘slen’ set but not used [-Wunused-but-set-variable] 717 | Int4 slen, swidth; | ^~~~ ingenwin.c: In function ‘Ing_ResizeMotifWindow’: ingenwin.c:785:12: warning: unused variable ‘name’ [-Wunused-variable] 785 | CharPtr name = NULL; | ^~~~ ingenwin.c:783:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable] 783 | BaR hsb; | ^~~ ingenwin.c: In function ‘Ing_ShowComplexity’: ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1270 | while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){ | ^ ingenwin.c: In function ‘Ing_CreateNewFeature’: ingenwin.c:1301:22: warning: unused variable ‘rnatype’ [-Wunused-variable] 1301 | Uint1 rnatype=0; | ^~~~~~~ ingenwin.c: In function ‘Ing_GetAlignmentIntervals’: ingenwin.c:1418:20: warning: unused variable ‘master’ [-Wunused-variable] 1418 | SeqIdPtr master = NULL; | ^~~~~~ ingenwin.c: In function ‘Ing_OldGetAlignmentIntervals’: ingenwin.c:1494:20: warning: unused variable ‘master’ [-Wunused-variable] 1494 | SeqIdPtr master = NULL; | ^~~~~~ ingenwin.c: In function ‘Ing_OldMakeLocListFromSAP’: ingenwin.c:1613:26: warning: unused variable ‘slp2’ [-Wunused-variable] 1613 | SeqLocPtr slp1 = NULL, slp2 = NULL; | ^~~~ ingenwin.c:1613:13: warning: unused variable ‘slp1’ [-Wunused-variable] 1613 | SeqLocPtr slp1 = NULL, slp2 = NULL; | ^~~~ ingenwin.c: In function ‘Ing_OM_MsgFunc’: ingenwin.c:2380:15: warning: the address of ‘sfc’ will always evaluate as ‘true’ [-Waddress] 2380 | if (&sfc) | ^ ingenwin.c:2284:22: warning: unused variable ‘segID’ [-Wunused-variable] 2284 | Uint2 segID=0; | ^~~~~ ingenwin.c:2280:22: warning: unused variable ‘sep’ [-Wunused-variable] 2280 | SeqEntryPtr sep=NULL; | ^~~ ingenwin.c:2271:31: warning: unused variable ‘number’ [-Wunused-variable] 2271 | Int4 score=0, number=0; | ^~~~~~ ingenwin.c:2271:22: warning: unused variable ‘score’ [-Wunused-variable] 2271 | Int4 score=0, number=0; | ^~~~~ ingenwin.c:2270:34: warning: unused variable ‘n’ [-Wunused-variable] 2270 | Int4 s1=0, s2=0, n=1; | ^ ingenwin.c:2270:28: warning: unused variable ‘s2’ [-Wunused-variable] 2270 | Int4 s1=0, s2=0, n=1; | ^~ ingenwin.c:2270:22: warning: unused variable ‘s1’ [-Wunused-variable] 2270 | Int4 s1=0, s2=0, n=1; | ^~ ingenwin.c: In function ‘Ing_MoveCursor’: ingenwin.c:2631:9: warning: variable ‘grayClr2’ set but not used [-Wunused-but-set-variable] 2631 | Uint1 grayClr2[3]; | ^~~~~~~~ ingenwin.c: In function ‘Ing_FeatViewerClickProc’: ingenwin.c:2814:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2814 | if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){ | ^~~~~~ ingenwin.c:2804:14: warning: unused variable ‘slp’ [-Wunused-variable] 2804 | SeqLocPtr slp=NULL; | ^~~ ingenwin.c: In function ‘Ing_SequenceClickProc’: ingenwin.c:2908:22: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable] 2908 | SelStructPtr ssp=NULL; | ^~~ ingenwin.c: In function ‘Ing_ReadInBlastAsn’: ingenwin.c:3077:19: warning: unused variable ‘Report’ [-Wunused-variable] 3077 | IngReportPtr Report=NULL; | ^~~~~~ ingenwin.c:3075:19: warning: unused variable ‘sip’ [-Wunused-variable] 3075 | SeqIdPtr sip=NULL; | ^~~ ingenwin.c:3074:19: warning: unused variable ‘salp’ [-Wunused-variable] 3074 | SeqAlignPtr salp=NULL; | ^~~~ ingenwin.c:3073:19: warning: unused variable ‘n_sap’ [-Wunused-variable] 3073 | SeqAlignPtr n_sap=NULL; | ^~~~~ ingenwin.c: In function ‘Ing_ParseSeqIdFile’: ingenwin.c:3142:20: warning: unused variable ‘bsp’ [-Wunused-variable] 3142 | BioseqPtr bsp=NULL; | ^~~ ingenwin.c: In function ‘Ing_ReadInFeatureTable’: ingenwin.c:3194:20: warning: variable ‘sanp’ set but not used [-Wunused-but-set-variable] 3194 | SeqAnnotPtr sanp; | ^~~~ ingenwin.c: In function ‘Ing_AssembleGenscanInfo’: ingenwin.c:3258:17: warning: unused variable ‘slp’ [-Wunused-variable] 3258 | SeqLocPtr slp=NULL; | ^~~ ingenwin.c: In function ‘Ing_ReadInGenscan’: ingenwin.c:3300:33: warning: unused variable ‘str’ [-Wunused-variable] 3300 | CharPtr letter=NULL, str=NULL; | ^~~ ingenwin.c:3300:20: warning: unused variable ‘letter’ [-Wunused-variable] 3300 | CharPtr letter=NULL, str=NULL; | ^~~~~~ ingenwin.c:3298:33: warning: unused variable ‘first_pass’ [-Wunused-variable] 3298 | Boolean found=FALSE, first_pass=FALSE; | ^~~~~~~~~~ ingenwin.c: In function ‘Ing_AssembleTabDelimited’: ingenwin.c:3519:17: warning: variable ‘score’ set but not used [-Wunused-but-set-variable] 3519 | Int4 score; | ^~~~~ ingenwin.c:3516:17: warning: unused variable ‘tmp’ [-Wunused-variable] 3516 | CharPtr tmp=NULL; | ^~~ ingenwin.c: In function ‘Ing_ReadInTabDelimited’: ingenwin.c:3659:40: warning: variable ‘label_str’ set but not used [-Wunused-but-set-variable] 3659 | CharPtr tmp=NULL, str=NULL, label_str=NULL; | ^~~~~~~~~ ingenwin.c:3659:20: warning: unused variable ‘tmp’ [-Wunused-variable] 3659 | CharPtr tmp=NULL, str=NULL, label_str=NULL; | ^~~ ingenwin.c:3653:20: warning: unused variable ‘lip_tmp’ [-Wunused-variable] 3653 | IngInfoPtr lip_tmp=NULL; | ^~~~~~~ ingenwin.c:3650:20: warning: unused variable ‘letter’ [-Wunused-variable] 3650 | CharPtr letter=NULL; | ^~~~~~ ingenwin.c: In function ‘Ing_FileOpenSpecial’: ingenwin.c:3984:16: warning: unused variable ‘Report’ [-Wunused-variable] 3984 | IngReportPtr Report=NULL; | ^~~~~~ ingenwin.c: In function ‘Ing_FileOpenMain’: ingenwin.c:4078:21: warning: unused variable ‘sep_orig’ [-Wunused-variable] 4078 | SeqEntryPtr sep_orig=NULL, sep=NULL; | ^~~~~~~~ ingenwin.c: In function ‘Ing_ResizeMainWindow’: ingenwin.c:4187:25: warning: variable ‘InfoHeight’ set but not used [-Wunused-but-set-variable] 4187 | Int2 RulerHeight, InfoHeight; | ^~~~~~~~~~ ingenwin.c: In function ‘Ing_OpenFromFileORNetwork’: ingenwin.c:4491:25: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 4491 | ButtoN b,b2; | ^~ ingenwin.c: In function ‘Ing_EditFeature’: ingenwin.c:4640:22: warning: variable ‘igvp’ set but not used [-Wunused-but-set-variable] 4640 | IngGenomeViewerPtr igvp=NULL; | ^~~~ ingenwin.c: In function ‘Ing_MarkSeqAnnot’: ingenwin.c:4713:16: warning: unused variable ‘bNoParent’ [-Wunused-variable] 4713 | Boolean bNoParent = FALSE; | ^~~~~~~~~ ingenwin.c: In function ‘Ing_PropagateClickProc’: ingenwin.c:5064:22: warning: unused variable ‘primID’ [-Wunused-variable] 5064 | Uint2 primID=0; | ^~~~~~ ingenwin.c:5063:22: warning: unused variable ‘itemtype’ [-Wunused-variable] 5063 | Uint2 itemtype=0; | ^~~~~~~~ ingenwin.c:5062:22: warning: unused variable ‘itemID’ [-Wunused-variable] 5062 | Uint4 itemID=0; | ^~~~~~ ingenwin.c:5061:22: warning: unused variable ‘entityID’ [-Wunused-variable] 5061 | Uint2 entityID=0; | ^~~~~~~~ ingenwin.c:5060:22: warning: unused variable ‘ssp’ [-Wunused-variable] 5060 | SelStructPtr ssp=NULL; | ^~~ ingenwin.c:5059:22: warning: unused variable ‘igvp’ [-Wunused-variable] 5059 | IngGenomeViewerPtr igvp=NULL; | ^~~~ ingenwin.c: In function ‘Ing_PrintCompProteins’: ingenwin.c:5146:32: warning: unused variable ‘str2’ [-Wunused-variable] 5146 | Char str1[200] = {""}, str2[10] = {""}; | ^~~~ ingenwin.c: In function ‘Ing_PropagateReport’: ingenwin.c:5282:14: warning: variable ‘ARROW’ set but not used [-Wunused-but-set-variable] 5282 | Uint1 ARROW=NO_ARROW; | ^~~~~ ingenwin.c:5279:14: warning: unused variable ‘stringwidth’ [-Wunused-variable] 5279 | Int4 stringwidth = 0; | ^~~~~~~~~~~ ingenwin.c:5277:14: warning: unused variable ‘left’ [-Wunused-variable] 5277 | Int4 left = 10; | ^~~~ ingenwin.c:5276:14: warning: variable ‘prim’ set but not used [-Wunused-but-set-variable] 5276 | PrimitivE prim; | ^~~~ ingenwin.c: In function ‘Ing_DoPropagate’: ingenwin.c:5596:14: warning: unused variable ‘strErr’ [-Wunused-variable] 5596 | Char strErr[50]={""}; | ^~~~~~ ingenwin.c: In function ‘Ing_GetFromNetwork’: ingenwin.c:7518:11: warning: unused variable ‘szAppName’ [-Wunused-variable] 7518 | Char szAppName [10]={"Ingenue"}; | ^~~~~~~~~ ingenwin.c: In function ‘Ing_SetupMainWindow’: ingenwin.c:7761:16: warning: unused variable ‘szAppName’ [-Wunused-variable] 7761 | Char szAppName [10]={"Ingenue"}; | ^~~~~~~~~ ingenwin.c:7760:48: warning: unused variable ‘str2’ [-Wunused-variable] 7760 | Char title[100]={""}, str1[20]={""}, str2[20]={""}; | ^~~~ ingenwin.c:7760:33: warning: unused variable ‘str1’ [-Wunused-variable] 7760 | Char title[100]={""}, str1[20]={""}, str2[20]={""}; | ^~~~ ingenwin.c:7760:16: warning: unused variable ‘title’ [-Wunused-variable] 7760 | Char title[100]={""}, str1[20]={""}, str2[20]={""}; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/ingenwin.h:60, from ingenwin.c:45: ingenwin.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:135, from ../include/ingenwin.h:62, from ingenwin.c:45: ../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function] 180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function] 181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function] 182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function] 199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function] 200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ingenwin.c:7552:13: warning: ‘Ing_ItemtoNetwork’ defined but not used [-Wunused-function] 7552 | static void Ing_ItemtoNetwork(IteM i){ | ^~~~~~~~~~~~~~~~~ ingenwin.c:6717:13: warning: ‘Ing_BspListProc’ defined but not used [-Wunused-function] 6717 | static void Ing_BspListProc(IteM i) | ^~~~~~~~~~~~~~~ ingenwin.c:5535:16: warning: ‘Ing_KeywordAlreadyInList’ defined but not used [-Wunused-function] 5535 | static Boolean Ing_KeywordAlreadyInList (ValNodePtr head, CharPtr kwd) | ^~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:1869:16: warning: ‘Ing_DeSelectPrim’ defined but not used [-Wunused-function] 1869 | static Boolean Ing_DeSelectPrim (SegmenT seg, PrimitivE prim, Uint2 segID, Uint2 primID, Uint2 primCt, VoidPtr userdata) | ^~~~~~~~~~~~~~~~ ingenwin.c:1610:18: warning: ‘Ing_OldMakeLocListFromSAP’ defined but not used [-Wunused-function] 1610 | static SeqLocPtr Ing_OldMakeLocListFromSAP(SeqAlignPtr sap) | ^~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:1487:23: warning: ‘Ing_OldGetAlignmentIntervals’ defined but not used [-Wunused-function] 1487 | static IngIvalInfoPtr Ing_OldGetAlignmentIntervals (SeqAlignPtr sap, Int4 from_row, Int4 to_row, Int4 from, Int4 to, Uint1 strand) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from ../include/ingenwin.h:62, from ingenwin.c:45: ../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable] 229 | static AsnModulePtr amp = ampx; | ^~~ ../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable] 228 | static AsnTypePtr at = atx; | ^~ ../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable] 227 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "blstspc.h23"; | ^~~~~~~~~~~ ingenwin.c: In function ‘Ing_ReplaceMismatchedProc’: ingenwin.c:4902:3: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4902 | Ing_ReplaceAllMismatchedInLocation(igvp, rmp->sap, start, stop, GetStatus(rmp->all), GetStatus(rmp->gaps), GetStatus(rmp->inserts)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:4902:3: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized] ingenwin.c: In function ‘Ing_PropagateReport’: ingenwin.c:5353:17: warning: ‘%s’ directive writing up to 299 bytes into a region of size 255 [-Wformat-overflow=] 5353 | sprintf(str, "%s", pfp->name); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 300 bytes into a destination of size 255 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:5229:37: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5229 | for (i = last_pos; i <= exit; i += nchars_row){ | ~~^~~~~~~~~~~~~ ingenwin.c:5137:17: note: ‘j’ was declared here 5137 | Int4 i, j, k, row; | ^ ingenwin.c: In function ‘Ing_DoPropagate’: ingenwin.c:5625:26: warning: ‘ already exists. Do you stil...’ directive writing 51 bytes into a region of size between 1 and 300 [-Wformat-overflow=] 5625 | sprintf (str_buf, "%s already exists. Do you still want to propagate it?", pfp->name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 52 and 351 bytes into a destination of size 300 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c: In function ‘Ing_FileOpenSpecial’: ingenwin.c:3290:13: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3290 | slp_list=Ing_MakeSlpList(NULL, n/2, ivals, strand, igvp->bsp->id); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:3255:17: note: ‘strand’ was declared here 3255 | Uint1 strand; | ^~~~~~ ingenwin.c: In function ‘Ing_KozakProc’: ingenwin.c:1048:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1048 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:1006:22: note: ‘ReportW’ was declared here 1006 | WindoW ReportW; | ^~~~~~~ ingenwin.c: In function ‘Ing_SignalPeptideProc’: ingenwin.c:1099:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1099 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:1057:22: note: ‘ReportW’ was declared here 1057 | WindoW ReportW; | ^~~~~~~ ingenwin.c: In function ‘Ing_RepeatsProc’: ingenwin.c:997:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 997 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:955:22: note: ‘ReportW’ was declared here 955 | WindoW ReportW; | ^~~~~~~ ingenwin.c: In function ‘Ing_PolyAProc’: ingenwin.c:946:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 946 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:904:22: note: ‘ReportW’ was declared here 904 | WindoW ReportW; | ^~~~~~~ ingenwin.c: In function ‘Ing_CpGProc’: ingenwin.c:895:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 895 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:857:22: note: ‘ReportW’ was declared here 857 | WindoW ReportW; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macrodlg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from macrodlg.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ macrodlg.c: In function ‘ExistingTextDialog’: macrodlg.c:1959:22: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable] 1959 | PrompT ppt; | ^~~ macrodlg.c: In function ‘EndDistanceToDialog’: macrodlg.c:3076:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3076 | sprintf (buf, "%d", v->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:3082:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3082 | sprintf (buf, "%d", v->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:3088:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3088 | sprintf (buf, "%d", v->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c: In function ‘SourceQualChoiceDialog’: macrodlg.c:3757:48: warning: variable ‘b4’ set but not used [-Wunused-but-set-variable] 3757 | ButtoN b1, b2, b3 = NULL, b4 = NULL; | ^~ macrodlg.c:3757:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable] 3757 | ButtoN b1, b2, b3 = NULL, b4 = NULL; | ^~ macrodlg.c:3757:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 3757 | ButtoN b1, b2, b3 = NULL, b4 = NULL; | ^~ macrodlg.c:3757:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable] 3757 | ButtoN b1, b2, b3 = NULL, b4 = NULL; | ^~ macrodlg.c: In function ‘SourceConstraintDialog’: macrodlg.c:3995:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable] 3995 | ButtoN b1, b2, b3; | ^~ macrodlg.c:3995:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 3995 | ButtoN b1, b2, b3; | ^~ macrodlg.c:3995:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable] 3995 | ButtoN b1, b2, b3; | ^~ macrodlg.c: In function ‘CDSGeneProtQualConstraintDialog’: macrodlg.c:4309:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable] 4309 | ButtoN b1, b2, b3; | ^~ macrodlg.c:4309:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 4309 | ButtoN b1, b2, b3; | ^~ macrodlg.c:4309:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable] 4309 | ButtoN b1, b2, b3; | ^~ macrodlg.c: In function ‘QuantityConstraintToDialog’: macrodlg.c:7368:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 7368 | sprintf (buf, "%d", vnp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:7373:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 7373 | sprintf (buf, "%d", vnp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:7378:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 7378 | sprintf (buf, "%d", vnp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c: In function ‘TestApplyActionDialog’: macrodlg.c:12965:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable] 12965 | Int2 field_type = 0; | ^~~~~~~~~~ macrodlg.c: In function ‘TestEditActionDialog’: macrodlg.c:13170:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable] 13170 | Int2 field_type = 0; | ^~~~~~~~~~ macrodlg.c: In function ‘TestRemoveOutsideActionDialog’: macrodlg.c:13328:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable] 13328 | Int2 field_type = 0; | ^~~~~~~~~~ macrodlg.c: In function ‘ApplyFeatureActionToDialog’: macrodlg.c:15186:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 15186 | sprintf (num, "%d^", action->location->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:15188:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 15188 | sprintf (num, "%d", action->location->data.intvalue + 1); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c: In function ‘AddMacroActions’: macrodlg.c:20523:25: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable] 20523 | Boolean rval = FALSE; | ^~~~ macrodlg.c: In function ‘PointerToSampleDialog’: macrodlg.c:20659:19: warning: variable ‘max_char_per_line’ set but not used [-Wunused-but-set-variable] 20659 | Int4 max_char_per_line; | ^~~~~~~~~~~~~~~~~ macrodlg.c: In function ‘SampleDialogCopy’: macrodlg.c:20779:53: warning: variable ‘last_col’ set but not used [-Wunused-but-set-variable] 20779 | Int2 start_col = 0, end_col = 0, first_col, last_col; | ^~~~~~~~ macrodlg.c:20779:42: warning: variable ‘first_col’ set but not used [-Wunused-but-set-variable] 20779 | Int2 start_col = 0, end_col = 0, first_col, last_col; | ^~~~~~~~~ macrodlg.c: In function ‘SingleMacroAcceptButton’: macrodlg.c:22071:33: warning: variable ‘num_features’ set but not used [-Wunused-but-set-variable] 22071 | Int4 num_fields, num_features; | ^~~~~~~~~~~~ macrodlg.c:22071:21: warning: variable ‘num_fields’ set but not used [-Wunused-but-set-variable] 22071 | Int4 num_fields, num_features; | ^~~~~~~~~~ macrodlg.c: In function ‘LaunchMacroTemplateEditor’: macrodlg.c:23785:23: warning: variable ‘bfp’ set but not used [-Wunused-but-set-variable] 23785 | BaseFormPtr bfp; | ^~~ macrodlg.c: In function ‘SearchFuncToDialog’: macrodlg.c:25755:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 25755 | sprintf (buf, "%d", func->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:25776:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 25776 | sprintf (buf, "%d", func->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld At top level: macrodlg.c:20095:13: warning: ‘ChangeMacroActionPopup’ defined but not used [-Wunused-function] 20095 | static void ChangeMacroActionPopup (LisT t) | ^~~~~~~~~~~~~~~~~~~~~~ macrodlg.c:20038:13: warning: ‘GetPopupChoiceForActionChoice’ defined but not used [-Wunused-function] 20038 | static Int2 GetPopupChoiceForActionChoice (Uint1 action_choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macrodlg.c:19715:13: warning: ‘GetCategoryForActionChoice’ defined but not used [-Wunused-function] 19715 | static Int2 GetCategoryForActionChoice (Uint1 action_choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ macrodlg.c:19698:14: warning: ‘GetActionChoiceForCategoryPopupChoice’ defined but not used [-Wunused-function] 19698 | static Uint1 GetActionChoiceForCategoryPopupChoice (Int2 category, Int2 popup_choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macrodlg.c: In function ‘ActionToSingleMacroActionForm’: macrodlg.c:22273:30: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 22273 | Show (frm->action_dlgs[val - 1]); | ~~~~^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF biosrc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/biosrc.h:48, from biosrc.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ biosrc.c: In function ‘CreateSimpleBioSourceDialog’: biosrc.c:2455:18: warning: variable ‘indexerVersion’ set but not used [-Wunused-but-set-variable] 2455 | Boolean indexerVersion; | ^~~~~~~~~~~~~~ biosrc.c: In function ‘CreateBioSourceDialog’: biosrc.c:3615:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] 3615 | PrompT y; | ^ At top level: biosrc.c:3291:26: warning: ‘EnumListFromQualNameAssoc’ defined but not used [-Wunused-function] 3291 | static EnumFieldAssocPtr EnumListFromQualNameAssoc (Nlm_QualNameAssocPtr qp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:3100:16: warning: ‘SubsourceDialogToSubSourcePtr’ defined but not used [-Wunused-function] 3100 | static Pointer SubsourceDialogToSubSourcePtr (DialoG d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:2677:13: warning: ‘SubSourcePtrToSubsourceDialog’ defined but not used [-Wunused-function] 2677 | static void SubSourcePtrToSubsourceDialog (DialoG d, Pointer data) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:2617:16: warning: ‘OrgmodDialogToOrgModPtr’ defined but not used [-Wunused-function] 2617 | static Pointer OrgmodDialogToOrgModPtr (DialoG d) | ^~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:2568:13: warning: ‘OrgModPtrToOrgmodDialog’ defined but not used [-Wunused-function] 2568 | static void OrgModPtrToOrgmodDialog (DialoG d, Pointer data) | ^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdrgn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/cdrgn.h:89, from cdrgn.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cdrgn.c: In function ‘SetBestProteinFeature’: cdrgn.c:1003:21: warning: unused variable ‘prp’ [-Wunused-variable] 1003 | ProtRefPtr prp; | ^~~ cdrgn.c: In function ‘CdRegionPtrToForm’: cdrgn.c:1050:19: warning: unused variable ‘vnp’ [-Wunused-variable] 1050 | ValNodePtr vnp; | ^~~ cdrgn.c: In function ‘ProductToSeqLocPtr’: cdrgn.c:1293:19: warning: variable ‘rfp’ set but not used [-Wunused-but-set-variable] 1293 | RnaFormPtr rfp = NULL; | ^~~ cdrgn.c: In function ‘CreateCodeBreakAlist’: cdrgn.c:1926:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 1926 | Uint1 first; | ^~~~~ cdrgn.c: In function ‘CodeBreakPtrToCodeBreakDialog’: cdrgn.c:1977:19: warning: variable ‘aa’ set but not used [-Wunused-but-set-variable] 1977 | Uint1 aa; | ^~ cdrgn.c: In function ‘PopulateAAPopup’: cdrgn.c:7041:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 7041 | Uint1 first; | ^~~~~ cdrgn.c: In function ‘RnaRefPtrToForm’: cdrgn.c:7557:17: warning: unused variable ‘is_iMet’ [-Wunused-variable] 7557 | Boolean is_iMet = FALSE; | ^~~~~~~ cdrgn.c:7556:17: warning: unused variable ‘is_fMet’ [-Wunused-variable] 7556 | Boolean is_fMet = FALSE; | ^~~~~~~ At top level: cdrgn.c:6851:13: warning: ‘ConvertRnaRefNameToProductQual’ defined but not used [-Wunused-function] 6851 | static void ConvertRnaRefNameToProductQual (SeqFeatPtr sfp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdrgn.c:6789:13: warning: ‘RemoveQualByName’ defined but not used [-Wunused-function] 6789 | static void RemoveQualByName (SeqFeatPtr sfp, CharPtr qual_name) | ^~~~~~~~~~~~~~~~ cdrgn.c:6770:18: warning: ‘FindOrAddQual’ defined but not used [-Wunused-function] 6770 | static GBQualPtr FindOrAddQual (SeqFeatPtr sfp, CharPtr qual_name) | ^~~~~~~~~~~~~ cdrgn.c:6323:15: warning: ‘CreateMrnaUserObjectDialog’ defined but not used [-Wunused-function] 6323 | static DialoG CreateMrnaUserObjectDialog (GrouP h, CharPtr label, SeqEntryPtr sep, BaseFormPtr bfp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cdrgn.c:6246:14: warning: ‘check_rna_type’ defined but not used [-Wunused-function] 6246 | static Uint1 check_rna_type (Uint1 type) | ^~~~~~~~~~~~~~ cdrgn.c:3183:13: warning: ‘SetComment’ defined but not used [-Wunused-function] 3183 | static void SetComment (CharPtr new_comment, WindoW w) | ^~~~~~~~~~ cdrgn.c:2149:13: warning: ‘AccessionToGi’ defined but not used [-Wunused-function] 2149 | static Int4 AccessionToGi (CharPtr string) | ^~~~~~~~~~~~~ cdrgn.c:961:13: warning: ‘FormToProtRef’ defined but not used [-Wunused-function] 961 | static void FormToProtRef(CdRgnFormPtr cfp, ProtRefPtr prp) | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF import.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/import.h:48, from import.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ import.c:3776:22: warning: ‘kDoNotEditTitle’ initialized and declared ‘extern’ 3776 | extern const CharPtr kDoNotEditTitle = "You are manually editing a title. If you continue, the title will not be automatically updated if the taxonomy information changes. Are you sure you want to do this? It is a very bad idea."; | ^~~~~~~~~~~~~~~ import.c: In function ‘ExpandSecondaries’: import.c:3394:30: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=] 3394 | sprintf (numbers, "%*ld", digits, (long) idx); | ^~~~ import.c:3394:29: note: directive argument in the range [1, 2147483647] 3394 | sprintf (numbers, "%*ld", digits, (long) idx); | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/import.h:48, from import.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pubdesc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/pubdesc.h:48, from pubdesc.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pubdesc.c: In function ‘MakeReplaceAuthorsForm’: pubdesc.c:4303:24: warning: variable ‘pepp’ set but not used [-Wunused-but-set-variable] 4303 | PubdescEditProcsPtr pepp; | ^~~~ pubdesc.c: In function ‘DisplayDocSum’: pubdesc.c:4865:9: warning: variable ‘lineheight’ set but not used [-Wunused-but-set-variable] 4865 | Int2 lineheight; | ^~~~~~~~~~ At top level: pubdesc.c:5377:13: warning: ‘Quit’ defined but not used [-Wunused-function] 5377 | static void Quit (ButtoN b) | ^~~~ pubdesc.c:5113:14: warning: ‘AddAll’ defined but not used [-Wunused-function] 5113 | static void AddAll(Entrez2RequestPtr e2rp, CharPtr term, Boolean is_1st) | ^~~~~~ pubdesc.c: In function ‘SendQuery’: pubdesc.c:5096:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 5096 | sprintf (year_buf, "%d", year - 1); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/pubdesc.h:48, from pubdesc.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pubdesc.c:5099:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 5099 | sprintf (year_buf, "%d", year); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/pubdesc.h:48, from pubdesc.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pubdesc.c:5102:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 5102 | sprintf (year_buf, "%d", year + 1); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/pubdesc.h:48, from pubdesc.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsub.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/seqsub.h:58, from seqsub.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqsub.c: In function ‘SeqSubmitFromTemplateEditor’: seqsub.c:3250:20: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable] 3250 | ObjMgrDataPtr omdp; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mapgene.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from mapgene.c:2: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mapgene.c: In function ‘load_new_align’: mapgene.c:79:17: warning: variable ‘match_slp’ set but not used [-Wunused-but-set-variable] 79 | SeqLocPtr slp, match_slp, t_slp; | ^~~~~~~~~ mapgene.c: In function ‘figure_loc_by_position’: mapgene.c:1039:20: warning: variable ‘center’ set but not used [-Wunused-but-set-variable] 1039 | Int4 start, stop, center; | ^~~~~~ mapgene.c: In function ‘cvt_loc_for_single_gene’: mapgene.c:1958:29: warning: variable ‘p_align_offset’ set but not used [-Wunused-but-set-variable] 1958 | Int4 offset, align_offset, p_align_offset; | ^~~~~~~~~~~~~~ mapgene.c:1957:7: warning: unused variable ‘shift’ [-Wunused-variable] 1957 | Int4 shift = 0; | ^~~~~ mapgene.c: In function ‘print_header_for_center’: mapgene.c:2693:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable] 2693 | CharPtr link; | ^~~~ mapgene.c: In function ‘PrintGeneticMarkerForOneMap’: mapgene.c:3635:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable] 3635 | CharPtr link; | ^~~~ At top level: mapgene.c:3207:16: warning: ‘convert_center_name_to_gifname’ defined but not used [-Wunused-function] 3207 | static Boolean convert_center_name_to_gifname (CharPtr center_name, CharPtr gif_name) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mapgene.c:1788:13: warning: ‘adjust_slp_list’ defined but not used [-Wunused-function] 1788 | static void adjust_slp_list(ValNodePtr slp_list) | ^~~~~~~~~~~~~~~ mapgene.c:1748:16: warning: ‘merge_slp_list’ defined but not used [-Wunused-function] 1748 | static Boolean merge_slp_list(ValNodePtr PNTR gene_slp_list, ValNodePtr slp_list) | ^~~~~~~~~~~~~~ mapgene.c:1280:13: warning: ‘change_anchor_to_front’ defined but not used [-Wunused-function] 1280 | static void change_anchor_to_front(ValNodePtr msp_list, SeqIdPtr anchor_id) | ^~~~~~~~~~~~~~~~~~~~~~ mapgene.c:200:13: warning: ‘get_center_pointer’ defined but not used [-Wunused-function] 200 | static Int4 get_center_pointer(SeqLocPtr slp) | ^~~~~~~~~~~~~~~~~~ mapgene.c:27:13: warning: ‘print_this_id’ defined but not used [-Wunused-function] 27 | static void print_this_id (SeqIdPtr sip) | ^~~~~~~~~~~~~ mapgene.c: In function ‘PrintHTMLContigAlign.constprop’: mapgene.c:2798:30: warning: ‘%s’ directive writing up to 30 bytes into a region of size 25 [-Wformat-overflow=] 2798 | sprintf(link_name, "CONTIG%s", alpha_name); | ^~ ~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from mapgene.c:2: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 37 bytes into a destination of size 31 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mapgene.c: In function ‘PrintContigForOneMap’: mapgene.c:3126:2: warning: ‘yac_num’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3126 | for(i = 0; i>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prtgene.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/tofile.h:66, from ../include/prtgene.h:3, from prtgene.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ prtgene.c: In function ‘print_sfp_ext’: prtgene.c:108:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 108 | if(ufp->choice == 2) /*integer */ | ^~ prtgene.c:110:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 110 | print_store_buf(temp, buf, buf_size, &len, fp); | ^~~~~~~~~~~~~~~ prtgene.c: In function ‘print_store_for_html’: prtgene.c:749:7: warning: variable ‘white_sp’ set but not used [-Wunused-but-set-variable] 749 | Char white_sp; | ^~~~~~~~ prtgene.c: In function ‘PrintSequenceToFile.isra’: prtgene.c:950:28: warning: ‘ (bp) on the genome’ directive writing 19 bytes into a region of size between 16 and 96 [-Wformat-overflow=] 950 | sprintf(temp, ": %s - %s (bp) on the genome", temp_1, temp_2); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/tofile.h:66, from ../include/prtgene.h:3, from prtgene.c:1: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 105 bytes into a destination of size 101 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libncbidesk.a ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbidesk.a ../lib ranlib ../lib/libncbidesk.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvclick.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvclick.c:248: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvclick.c: In function ‘DDV_SendBSPSelectMsg_OLD’: ddvclick.c:979:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable] 979 | Boolean bDeselectAll=TRUE; | ^~~~~~~~~~~~ ddvclick.c: In function ‘DDV_SendBSPSelectMsg’: ddvclick.c:1090:18: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable] 1090 | Boolean bDeselectAll=TRUE; | ^~~~~~~~~~~~ ddvclick.c: In function ‘DDV_DragProc’: ddvclick.c:2013:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable] 2013 | ParaGPtr cur_pgp=NULL; | ^~~~~~~ ddvclick.c: In function ‘DDV_HoldProc’: ddvclick.c:2494:13: warning: unused variable ‘Scroll’ [-Wunused-variable] 2494 | Boolean Scroll=FALSE; | ^~~~~~ ddvclick.c:2490:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable] 2490 | ParaGPtr cur_pgp=NULL; | ^~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvclick.c:252: ddvclick.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvclick.c:252: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvclick.c:252: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvclick.c:252: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ddvclick.c:1823:13: warning: ‘EraseOutline’ defined but not used [-Wunused-function] 1823 | static void EraseOutline(PaneL p) { | ^~~~~~~~~~~~ ddvclick.c:1811:16: warning: ‘RectanglesAreSame’ defined but not used [-Wunused-function] 1811 | static Boolean RectanglesAreSame(RecT rc1, RecT rc2) { | ^~~~~~~~~~~~~~~~~ ddvclick.c:970:13: warning: ‘DDV_SendBSPSelectMsg_OLD’ defined but not used [-Wunused-function] 970 | static void DDV_SendBSPSelectMsg_OLD(DdvMainPtr dmp,Int4 bsp_coord,Int4 SeqAlign_coord, | ^~~~~~~~~~~~~~~~~~~~~~~~ ddvclick.c:611:13: warning: ‘DDV_GetSeqAlignCoordGivenCol’ defined but not used [-Wunused-function] 611 | static Int4 DDV_GetSeqAlignCoordGivenCol(DdvMainPtr dmp, Int4 Disp_coord) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvclick.c: In function ‘DDV_GetSeqNameGivenRow’: ddvclick.c:956:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 956 | if (!sip) | ^ ddvclick.c: In function ‘DDV_ReleaseProc’: ddvclick.c:1127:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1127 | slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvclick.c:1091:18: note: ‘pgp’ was declared here 1091 | ParaGPtr pgp; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvgraph.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvgraph.c:210: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvgraph.c: In function ‘DDV_DrawSequence’: ddvgraph.c:701:31: warning: unused variable ‘pos’ [-Wunused-variable] 701 | Int2 decal=1,i,x,y,pos=0; | ^~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ddvgraph.c:215: ddvgraph.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ddvgraph.c:215: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ddvgraph.c:215: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ddvgraph.c:215: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvopen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvopen.c:372: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvopen.c: In function ‘DDV_GetAndCheckSeqAlign’: ddvopen.c:1739:8: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable] 1739 | Uint2 nRet=DVV_MSG_M_OK; | ^~~~ ddvopen.c: In function ‘DDV_FOpenAcceptProc’: ddvopen.c:1932:11: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable] 1932 | Uint2 nRet=DVV_MSG_M_OK,The_entityID; | ^~~~ ddvopen.c: In function ‘DDV_NetOpen_okProc’: ddvopen.c:2141:8: warning: variable ‘AccessType’ set but not used [-Wunused-but-set-variable] 2141 | Int2 AccessType,procval; | ^~~~~~~~~~ ddvopen.c: In function ‘DDV_StartMainWin_Slave’: ddvopen.c:2411:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 2411 | else | ^~~~ ddvopen.c:2417:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 2417 | if (!w) return(NULL); | ^~ ddvopen.c: In function ‘DDV_ImportBioseqDlg’: ddvopen.c:2819:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 2819 | ButtoN b; | ^ ddvopen.c: In function ‘DDV_HideDlg’: ddvopen.c:3135:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 3135 | ButtoN b; | ^ In file included from ../include/sqnutils.h:51, from ../include/udviewer.h:219, from ddvopen.c:376: ddvopen.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/udviewer.h:228, from ddvopen.c:376: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ddvopen.c:377: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ddvopen.c:377: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ddvopen.c:377: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ddvopen.c:377: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ddvopen.c:2111:16: warning: ‘DDV_IsInt’ defined but not used [-Wunused-function] 2111 | static Boolean DDV_IsInt(CharPtr szAccess) | ^~~~~~~~~ ddvopen.c:1285:13: warning: ‘DDV_NoConvert’ defined but not used [-Wunused-function] 1285 | static void DDV_NoConvert(ButtoN g) { | ^~~~~~~~~~~~~ ddvopen.c:1272:13: warning: ‘DDV_Convert’ defined but not used [-Wunused-function] 1272 | static void DDV_Convert(ButtoN g) { | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvpanel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvpanel.c:389: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvpanel.c: In function ‘DDV_CreateViewerPanel’: ddvpanel.c:1177:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable] 1177 | Int2 cxChar,cyChar; | ^~~~~~ ddvpanel.c: In function ‘DDV_DispStyles_OkProc’: ddvpanel.c:1543:21: warning: unused variable ‘szBuf’ [-Wunused-variable] 1543 | Char szBuf[15]={""}; | ^~~~~ ddvpanel.c: In function ‘DDV_ExportTexte’: ddvpanel.c:2799:40: warning: variable ‘browse’ set but not used [-Wunused-but-set-variable] 2799 | ButtoN chk2,chk3,chk4,chk5,chk6,browse,ok; | ^~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvpanel.c:392: ddvpanel.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvpanel.c:392: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvpanel.c:392: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvpanel.c:392: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3377:13: warning: ‘write_annot’ defined but not used [-Wunused-function] 3377 | static void write_annot(SeqAlignPtr align) | ^~~~~~~~~~~ ddvpanel.c:3296:13: warning: ‘DDV_MoveRightBoundaryRight’ defined but not used [-Wunused-function] 3296 | static void DDV_MoveRightBoundaryRight(IteM i) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3290:13: warning: ‘DDV_MoveRightBoundaryLeft’ defined but not used [-Wunused-function] 3290 | static void DDV_MoveRightBoundaryLeft(IteM i) | ^~~~~~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3284:13: warning: ‘DDV_MoveLeftBoundaryRight’ defined but not used [-Wunused-function] 3284 | static void DDV_MoveLeftBoundaryRight(IteM i) | ^~~~~~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3278:13: warning: ‘DDV_MoveLeftBoundaryLeft’ defined but not used [-Wunused-function] 3278 | static void DDV_MoveLeftBoundaryLeft(IteM i) | ^~~~~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3272:13: warning: ‘DDV_MoveRowRight’ defined but not used [-Wunused-function] 3272 | static void DDV_MoveRowRight(IteM i) | ^~~~~~~~~~~~~~~~ ddvpanel.c:3266:13: warning: ‘DDV_MoveRowLeft’ defined but not used [-Wunused-function] 3266 | static void DDV_MoveRowLeft(IteM i) | ^~~~~~~~~~~~~~~ ddvpanel.c:3024:13: warning: ‘DDV_DeleteRow’ defined but not used [-Wunused-function] 3024 | static void DDV_DeleteRow(IteM i) | ^~~~~~~~~~~~~ ddvpanel.c: In function ‘DDV_SortPGPLineNum’: ddvpanel.c:2441:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2441 | n+=pgp->nLines; | ~~~^~~~~~~~ rm -f libddvlib.a ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libddvlib.a ../lib ranlib ../lib/libddvlib.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF corematx.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corematx.c:135: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dvncode.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from dvncode.c:69: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmmdb1.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmmdb1.c: In function ‘BiostrucAsnRead’: objmmdb1.c:90:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 90 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiostrucIdFree’: objmmdb1.c:323:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 323 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘BiostrucIdAsnRead’: objmmdb1.c:358:12: warning: unused variable ‘isError’ [-Wunused-variable] 358 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucSetAsnRead’: objmmdb1.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 547 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiostrucAnnotSetAsnRead’: objmmdb1.c:716:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 716 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiostrucResidueGraphSetAsnRead’: objmmdb1.c:885:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 885 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiostrucDescrFree’: objmmdb1.c:1015:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1015 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘BiostrucDescrAsnRead’: objmmdb1.c:1059:12: warning: unused variable ‘isError’ [-Wunused-variable] 1059 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucHistoryAsnRead’: objmmdb1.c:1270:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1270 | AsnReadFunc func; | ^~~~ objmmdb1.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable] 1269 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucReplaceAsnRead’: objmmdb1.c:1450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1450 | AsnReadFunc func; | ^~~~ objmmdb1.c:1449:12: warning: unused variable ‘isError’ [-Wunused-variable] 1449 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseFree’: objmmdb1.c:1618:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1618 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘BiostrucSourceAsnRead’: objmmdb1.c:1652:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1652 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseAsnRead’: objmmdb1.c:1753:12: warning: unused variable ‘isError’ [-Wunused-variable] 1753 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucGraphAsnRead’: objmmdb1.c:2001:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2001 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiomolDescrFree’: objmmdb1.c:2139:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2139 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘BiomolDescrAsnRead’: objmmdb1.c:2189:12: warning: unused variable ‘isError’ [-Wunused-variable] 2189 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘ResidueGraphAsnRead’: objmmdb1.c:2446:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2446 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘MoleculeGraphAsnRead’: objmmdb1.c:2654:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2654 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘InterResidueBondAsnRead’: objmmdb1.c:2856:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2856 | AsnReadFunc func; | ^~~~ objmmdb1.c:2855:12: warning: unused variable ‘isError’ [-Wunused-variable] 2855 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘ResidueAsnRead’: objmmdb1.c:3037:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3037 | AsnReadFunc func; | ^~~~ objmmdb1.c:3036:12: warning: unused variable ‘isError’ [-Wunused-variable] 3036 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘ResidueGraphPntrFree’: objmmdb1.c:3177:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3177 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’: objmmdb1.c:3212:12: warning: unused variable ‘isError’ [-Wunused-variable] 3212 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucGraphPntrAsnRead’: objmmdb1.c:3399:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3399 | AsnReadFunc func; | ^~~~ objmmdb1.c:3398:12: warning: unused variable ‘isError’ [-Wunused-variable] 3398 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucResidueGraphSetPntrAsnRead’: objmmdb1.c:3565:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3565 | AsnReadFunc func; | ^~~~ objmmdb1.c:3564:12: warning: unused variable ‘isError’ [-Wunused-variable] 3564 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘AtomAsnRead’: objmmdb1.c:3732:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3732 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘IntraResidueBondAsnRead’: objmmdb1.c:3924:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3924 | AsnReadFunc func; | ^~~~ objmmdb1.c:3923:12: warning: unused variable ‘isError’ [-Wunused-variable] 3923 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘ChiralCenterAsnRead’: objmmdb1.c:4097:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4097 | AsnReadFunc func; | ^~~~ objmmdb1.c:4096:12: warning: unused variable ‘isError’ [-Wunused-variable] 4096 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘AtomPntrAsnRead’: objmmdb1.c:4286:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4286 | AsnReadFunc func; | ^~~~ objmmdb1.c:4285:12: warning: unused variable ‘isError’ [-Wunused-variable] 4285 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘AtomPntrSetAsnRead’: objmmdb1.c:4441:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4441 | AsnReadFunc func; | ^~~~ In file included from ../include/strimprt.h:73, from objmmdb1.c:5: objmmdb1.c: At top level: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from objmmdb1.c:5: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objmmdb1.c: In function ‘BiostrucIdAsnRead’: objmmdb1.c:411:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 411 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb1.c: In function ‘BiostrucDescrAsnRead’: objmmdb1.c:1126:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1126 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb1.c: In function ‘BiomolDescrAsnRead’: objmmdb1.c:2284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2284 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb1.c: In function ‘BiostrucSourceAsnRead’: objmmdb1.c:1802:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1802 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb1.c:1752:10: note: ‘choice’ was declared here 1752 | Uint1 choice; | ^~~~~~ objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’: objmmdb1.c:3265:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3265 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmmdb2.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmmdb2.c: In function ‘BiostrucModelAsnRead’: objmmdb2.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 88 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘ModelDescrFree’: objmmdb2.c:242:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 242 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘ModelDescrAsnRead’: objmmdb2.c:289:12: warning: unused variable ‘isError’ [-Wunused-variable] 289 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘ModelSpaceAsnRead’: objmmdb2.c:512:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 512 | AsnReadFunc func; | ^~~~ objmmdb2.c:511:12: warning: unused variable ‘isError’ [-Wunused-variable] 511 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘Coordinates_coordinatesFree’: objmmdb2.c:709:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 709 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’: objmmdb2.c:743:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 743 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘Coordinates_coordinatesAsnRead’: objmmdb2.c:831:12: warning: unused variable ‘isError’ [-Wunused-variable] 831 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘ReferenceFrameAsnRead’: objmmdb2.c:1063:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1063 | AsnReadFunc func; | ^~~~ objmmdb2.c:1062:12: warning: unused variable ‘isError’ [-Wunused-variable] 1062 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘CoordinatesFree’: objmmdb2.c:1193:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1193 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘CoordinatesAsnRead’: objmmdb2.c:1231:12: warning: unused variable ‘isError’ [-Wunused-variable] 1231 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘AtomicCoordinatesAsnRead’: objmmdb2.c:1420:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1420 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘Surface_surfaceFree’: objmmdb2.c:1640:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1640 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’: objmmdb2.c:1686:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1686 | AsnReadFunc func; | ^~~~ objmmdb2.c:1685:12: warning: unused variable ‘isError’ [-Wunused-variable] 1685 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘Surface_surfaceAsnRead’: objmmdb2.c:1766:12: warning: unused variable ‘isError’ [-Wunused-variable] 1766 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘DensityCoordinatesAsnRead’: objmmdb2.c:2030:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2030 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘ModelSpacePointsAsnRead’: objmmdb2.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2263 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘AtomicTemperatureFactorsFree’: objmmdb2.c:2404:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2404 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’: objmmdb2.c:2439:12: warning: unused variable ‘isError’ [-Wunused-variable] 2439 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘AtomicOccupanciesAsnRead’: objmmdb2.c:2615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2615 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘AlternateConformationIdsAsnRead’: objmmdb2.c:2760:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2760 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘ConformationEnsembleAsnRead’: objmmdb2.c:2890:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2890 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘IsotropicTemperatureFactorsAsnRead’: objmmdb2.c:3054:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3054 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘AnisotropicTemperatureFactorsAsnRead’: objmmdb2.c:3221:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3221 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘TMeshAsnRead’: objmmdb2.c:3426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3426 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘TrianglesAsnRead’: objmmdb2.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3626 | AsnReadFunc func; | ^~~~ In file included from ../include/strimprt.h:72, from objmmdb2.c:5: objmmdb2.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from objmmdb2.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from objmmdb2.c:5: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objmmdb2.c: In function ‘ModelDescrAsnRead’: objmmdb2.c:366:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 366 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c: In function ‘CoordinatesAsnRead’: objmmdb2.c:1281:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1281 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’: objmmdb2.c:2485:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2485 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’: objmmdb2.c:877:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 877 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c:830:10: note: ‘choice’ was declared here 830 | Uint1 choice; | ^~~~~~ objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’: objmmdb2.c:1828:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1828 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c:1765:10: note: ‘choice’ was declared here 1765 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmmdb3.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmmdb3.c: In function ‘BiostrucFeatureSetAsnRead’: objmmdb3.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ChemGraphPntrsFree’: objmmdb3.c:220:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 220 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘AtomPntrsAsnRead’: objmmdb3.c:443:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 443 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ChemGraphAlignmentAsnRead’: objmmdb3.c:626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 626 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ChemGraphInteractionAsnRead’: objmmdb3.c:824:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 824 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘SphereAsnRead’: objmmdb3.c:1024:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1024 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ConeAsnRead’: objmmdb3.c:1192:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1192 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘CylinderAsnRead’: objmmdb3.c:1372:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1372 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BrickAsnRead’: objmmdb3.c:1557:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1557 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘TransformAsnRead’: objmmdb3.c:1796:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1796 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BiostrucFeatureSetDescrFree’: objmmdb3.c:1921:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1921 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘Location_locationFree’: objmmdb3.c:2161:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2161 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘BiostrucFeatureAsnRead’: objmmdb3.c:2206:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2206 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘Property_propertyFree’: objmmdb3.c:2722:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2722 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘ColorPropAsnRead’: objmmdb3.c:2798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2798 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘CameraAsnRead’: objmmdb3.c:2986:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2986 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BiostrucScriptAsnRead’: objmmdb3.c:3171:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3171 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RegionPntrsAsnRead’: objmmdb3.c:3330:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3330 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RegionSimilarityAsnRead’: objmmdb3.c:3648:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3648 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘OtherFeatureAsnRead’: objmmdb3.c:3825:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3825 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BiostrucMoleculePntrAsnRead’: objmmdb3.c:3999:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3999 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘MoleculePntrsAsnRead’: objmmdb3.c:4342:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4342 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ResidueExplicitPntrsAsnRead’: objmmdb3.c:4505:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4505 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ResidueIntervalPntrAsnRead’: objmmdb3.c:4673:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4673 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RegionCoordinatesAsnRead’: objmmdb3.c:4845:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4845 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RegionBoundaryFree’: objmmdb3.c:4981:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 4981 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘AlignStatsAsnRead’: objmmdb3.c:5212:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5212 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RealValueAsnRead’: objmmdb3.c:5454:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5454 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ModelSpacePointAsnRead’: objmmdb3.c:5615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5615 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘MoveFree’: objmmdb3.c:5759:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 5759 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘RotMatrixAsnRead’: objmmdb3.c:5967:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5967 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘TransMatrixAsnRead’: objmmdb3.c:6200:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6200 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘GLMatrixAsnRead’: objmmdb3.c:6379:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6379 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BiostrucScriptStepAsnRead’: objmmdb3.c:6680:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6680 | AsnReadFunc func; | ^~~~ In file included from ../include/strimprt.h:72, from objmmdb3.c:5: objmmdb3.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from objmmdb3.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from objmmdb3.c:5: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ objmmdb3.c: In function ‘ChemGraphPntrsAsnRead’: objmmdb3.c:307:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 307 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘BiostrucFeatureSetDescrAsnRead’: objmmdb3.c:2024:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2024 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘ResiduePntrsAsnRead’: objmmdb3.c:4213:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4213 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘RegionBoundaryAsnRead’: objmmdb3.c:5075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5075 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘MoveAsnRead’: objmmdb3.c:5839:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5839 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘RegionPntrsAsnRead’: objmmdb3.c:3464:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3464 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c:3409:10: note: ‘choice’ was declared here 3409 | Uint1 choice; | ^~~~~~ objmmdb3.c: In function ‘BiostrucFeatureAsnRead’: objmmdb3.c:2691:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2691 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c:2626:10: note: ‘choice’ was declared here 2626 | Uint1 choice; | ^~~~~~ objmmdb3.c:2370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2370 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c:2308:10: note: ‘choice’ was declared here 2308 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcn3d.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objcn3d.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objcn3d.c: In function ‘Cn3dStyleDictionaryAsnRead’: objcn3d.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dUserAnnotationsAsnRead’: objcn3d.c:251:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 251 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dColorAsnRead’: objcn3d.c:415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 415 | AsnReadFunc func; | ^~~~ objcn3d.c:414:12: warning: unused variable ‘isError’ [-Wunused-variable] 414 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dBackboneStyleAsnRead’: objcn3d.c:605:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 605 | AsnReadFunc func; | ^~~~ objcn3d.c:604:12: warning: unused variable ‘isError’ [-Wunused-variable] 604 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dGeneralStyleAsnRead’: objcn3d.c:789:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 789 | AsnReadFunc func; | ^~~~ objcn3d.c:788:12: warning: unused variable ‘isError’ [-Wunused-variable] 788 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dBackboneLabelStyleAsnRead’: objcn3d.c:972:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 972 | AsnReadFunc func; | ^~~~ objcn3d.c:971:12: warning: unused variable ‘isError’ [-Wunused-variable] 971 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dStyleSettingsAsnRead’: objcn3d.c:1175:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1175 | AsnReadFunc func; | ^~~~ objcn3d.c:1174:12: warning: unused variable ‘isError’ [-Wunused-variable] 1174 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dStyleSettingsSetAsnRead’: objcn3d.c:1578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1578 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dStyleTableItemAsnRead’: objcn3d.c:1707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1707 | AsnReadFunc func; | ^~~~ objcn3d.c:1706:12: warning: unused variable ‘isError’ [-Wunused-variable] 1706 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dResidueRangeAsnRead’: objcn3d.c:1872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1872 | AsnReadFunc func; | ^~~~ objcn3d.c:1871:12: warning: unused variable ‘isError’ [-Wunused-variable] 1871 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dMoleculeLocationAsnRead’: objcn3d.c:2035:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2035 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dObjectLocationAsnRead’: objcn3d.c:2198:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2198 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dUserAnnotationAsnRead’: objcn3d.c:2363:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2363 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dGLMatrixAsnRead’: objcn3d.c:2555:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2555 | AsnReadFunc func; | ^~~~ objcn3d.c:2554:12: warning: unused variable ‘isError’ [-Wunused-variable] 2554 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dVectorAsnRead’: objcn3d.c:2843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2843 | AsnReadFunc func; | ^~~~ objcn3d.c:2842:12: warning: unused variable ‘isError’ [-Wunused-variable] 2842 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dViewSettingsAsnRead’: objcn3d.c:3016:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3016 | AsnReadFunc func; | ^~~~ objcn3d.c:3015:12: warning: unused variable ‘isError’ [-Wunused-variable] 3015 | Boolean isError = FALSE; | ^~~~~~~ In file included from ../include/mapcn3d.h:8, from objcn3d.c:5: objcn3d.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/mapcn3d.h:8, from objcn3d.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/mmdbapi1.h:232, from ../include/mmdbapi.h:92, from mmdbapi.c:116: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi.c: In function ‘MakeAModelstruc’: mmdbapi.c:192:11: warning: unused variable ‘iCount’ [-Wunused-variable] 192 | Int4 iCount = 0; | ^~~~~~ mmdbapi.c:189:11: warning: unused variable ‘pdnmsCount’ [-Wunused-variable] 189 | PDNMS pdnmsCount = NULL; | ^~~~~~~~~~ mmdbapi.c: In function ‘AddPFBSelect’: mmdbapi.c:532:11: warning: unused variable ‘pmsdStruc’ [-Wunused-variable] 532 | PMSD pmsdStruc = NULL; | ^~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mmdbapi1.c:294: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi1.c: In function ‘FreeAtomicModelAsnLists’: mmdbapi1.c:1037:21: warning: unused variable ‘pcoThis’ [-Wunused-variable] 1037 | CoordinatesPtr pcoThis = NULL; | ^~~~~~~ mmdbapi1.c: In function ‘FetchBS’: mmdbapi1.c:1242:13: warning: unused variable ‘bIsNetwork’ [-Wunused-variable] 1242 | Boolean bIsNetwork = FALSE; | ^~~~~~~~~~ mmdbapi1.c: In function ‘FreeSurfaceModelAsnList’: mmdbapi1.c:1627:16: warning: variable ‘pvnX’ set but not used [-Wunused-but-set-variable] 1627 | ValNodePtr pvnX = NULL; | ^~~~ mmdbapi1.c: In function ‘MakeChemGraphNodeList’: mmdbapi1.c:2343:16: warning: variable ‘pvnThis’ set but not used [-Wunused-but-set-variable] 2343 | ValNodePtr pvnThis = NULL; | ^~~~~~~ mmdbapi1.c: In function ‘DoApplyTransform’: mmdbapi1.c:2573:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 2573 | PMSD pmsdThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘DoReverseTransform’: mmdbapi1.c:2713:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 2713 | PMSD pmsdThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘InstBSAnnotSet’: mmdbapi1.c:2860:8: warning: unused variable ‘psfsThis’ [-Wunused-variable] 2860 | PSFS psfsThis = NULL; | ^~~~~~~~ mmdbapi1.c:2859:22: warning: unused variable ‘pbsfThis’ [-Wunused-variable] 2859 | BiostrucFeaturePtr pbsfThis = NULL; | ^~~~~~~~ mmdbapi1.c:2855:9: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 2855 | PMSD pmsdThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘BiosToSeq’: mmdbapi1.c:2978:19: warning: unused variable ‘loc1’ [-Wunused-variable] 2978 | ValNodePtr loc1 = NULL; | ^~~~ mmdbapi1.c:2967:22: warning: unused variable ‘pbsf’ [-Wunused-variable] 2967 | BiostrucFeaturePtr pbsf=NULL; | ^~~~ mmdbapi1.c: In function ‘fnPBSFtoPSA’: mmdbapi1.c:3174:19: warning: unused variable ‘loc1’ [-Wunused-variable] 3174 | ValNodePtr loc1 = NULL; | ^~~~ mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’: mmdbapi1.c:3408:19: warning: unused variable ‘loc1’ [-Wunused-variable] 3408 | ValNodePtr loc1 = NULL; | ^~~~ mmdbapi1.c:3397:22: warning: unused variable ‘pbsf’ [-Wunused-variable] 3397 | BiostrucFeaturePtr pbsf=NULL; | ^~~~ mmdbapi1.c: In function ‘InstallAlignedSlave’: mmdbapi1.c:3877:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 3877 | Int2 iTest; | ^~~~~ mmdbapi1.c:3874:9: warning: unused variable ‘psfsThis’ [-Wunused-variable] 3874 | PSFS psfsThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘BiostrucAddFeature’: mmdbapi1.c:4184:11: warning: variable ‘ncbiVast’ set but not used [-Wunused-but-set-variable] 4184 | Boolean ncbiVast = FALSE; | ^~~~~~~~ mmdbapi1.c:4182:11: warning: variable ‘pdbFootnote’ set but not used [-Wunused-but-set-variable] 4182 | Boolean pdbFootnote = FALSE; | ^~~~~~~~~~~ mmdbapi1.c:4181:11: warning: variable ‘pdbSite’ set but not used [-Wunused-but-set-variable] 4181 | Boolean pdbSite = FALSE; | ^~~~~~~ mmdbapi1.c:4172:15: warning: unused variable ‘pdvnThis’ [-Wunused-variable] 4172 | DValNodePtr pdvnThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘BiostrucAsnGet’: mmdbapi1.c:5289:18: warning: variable ‘aop’ set but not used [-Wunused-but-set-variable] 5289 | AsnOptionPtr aop; | ^~~ mmdbapi1.c: In function ‘BiosToSeq’: mmdbapi1.c:3083:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=] 3083 | sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from mmdbapi1.c:294: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdbapi1.c:3127:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3127 | dsp->ids->next = slavesip; | ~~~~~~~~~~~~~~~^~~~~~~~~~ mmdbapi1.c: In function ‘fnPBSFtoPSA’: mmdbapi1.c:3275:52: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=] 3275 | sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from mmdbapi1.c:294: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’: mmdbapi1.c:3515:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=] 3515 | sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from mmdbapi1.c:294: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdbapi1.c:3559:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3559 | dsp->ids->next = slavesip; | ~~~~~~~~~~~~~~~^~~~~~~~~~ mmdbapi1.c: In function ‘InstBSAnnotSet’: mmdbapi1.c:2885:15: warning: ‘iMMDBId’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2885 | pdnmsThis = FindLoadedBiostruc(NULL, iMMDBId); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mmdbapi2.c:159: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi2.c: In function ‘GetAtomLocs’: mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1471 | if (pmadThis) | ^ mmdbapi2.c: In function ‘AssignAtomLocId’: mmdbapi2.c:1537:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1537 | Int2 iTest = 0; | ^~~~~ mmdbapi2.c: In function ‘AssignBackBone’: mmdbapi2.c:1686:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1686 | Int2 iTest = 0; | ^~~~~ mmdbapi2.c: In function ‘AssignVirtual’: mmdbapi2.c:1790:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1790 | Int2 iTest = 0; | ^~~~~ mmdbapi2.c: In function ‘AssignIons’: mmdbapi2.c:1846:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1846 | Int2 iTest = 0; | ^~~~~ mmdbapi2.c: In function ‘MolFromPDBChain’: mmdbapi2.c:1931:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1931 | Int2 iTest; | ^~~~~ mmdbapi2.c: In function ‘SeqStringFromMol’: mmdbapi2.c:1948:9: warning: unused variable ‘iTest’ [-Wunused-variable] 1948 | Int4 iTest =0; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mmdbapi3.c:207: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi3.c: In function ‘WritePDBHeader’: mmdbapi3.c:840:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 840 | if(org) | ^~ mmdbapi3.c:845:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 845 | src = orgstring; | ^~~ mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 840 | if(org) | ^ mmdbapi3.c: In function ‘WritePDBRemarks’: mmdbapi3.c:1389:8: warning: unused variable ‘len’ [-Wunused-variable] 1389 | int len; | ^~~ mmdbapi3.c:1388:9: warning: unused variable ‘pcThis’ [-Wunused-variable] 1388 | Char pcThis[81]; | ^~~~~~ mmdbapi3.c:1387:21: warning: unused variable ‘pbsdrLast’ [-Wunused-variable] 1387 | BiostrucDescrPtr pbsdrLast = NULL; | ^~~~~~~~~ mmdbapi3.c:1386:21: warning: unused variable ‘pbsdrThis’ [-Wunused-variable] 1386 | BiostrucDescrPtr pbsdrThis = NULL; | ^~~~~~~~~ mmdbapi3.c: In function ‘WritePDBConnect’: mmdbapi3.c:1610:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1610 | Int2 iTest; | ^~~~~ mmdbapi3.c: In function ‘WritePDBModelList’: mmdbapi3.c:1625:10: warning: variable ‘iCount’ set but not used [-Wunused-but-set-variable] 1625 | Int4 iCount; | ^~~~~~ mmdbapi3.c: In function ‘WriteKinAtom’: mmdbapi3.c:2287:11: warning: unused variable ‘pcElName’ [-Wunused-variable] 2287 | CharPtr pcElName = NULL; | ^~~~~~~~ mmdbapi3.c: In function ‘WriteFASTAMolecule’: mmdbapi3.c:3537:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 3537 | Int4 iTest =0; | ^~~~~ mmdbapi3.c: In function ‘WriteKinAtom’: mmdbapi3.c:2314:12: warning: ‘iTemp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2314 | if (iTemp < TempsKine[(iIndex-1)]) return; /* too low */ | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/mmdbapi1.h:232, from ../include/mmdbapi.h:92, from mmdbapi4.c:106: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi4.c: In function ‘RefreshSurface’: mmdbapi4.c:147:10: warning: unused variable ‘iVal’ [-Wunused-variable] 147 | Int4 iVal = 0; | ^~~~ mmdbapi4.c: In function ‘FreeCoordinatesAsnLists’: mmdbapi4.c:335:28: warning: variable ‘pdcThis’ set but not used [-Wunused-but-set-variable] 335 | DensityCoordinatesPtr pdcThis = NULL; | ^~~~~~~ mmdbapi4.c: In function ‘FreeRedundantAsn’: mmdbapi4.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 371 | PMMD pmmdThis = NULL; | ^~~~~~~~ mmdbapi4.c:370:11: warning: unused variable ‘pdnmmThis’ [-Wunused-variable] 370 | PDNMM pdnmmThis = NULL; | ^~~~~~~~~ mmdbapi4.c:367:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable] 367 | BiostrucModelPtr pbsmThis = NULL; | ^~~~~~~~ mmdbapi4.c: In function ‘RefreshModelAsnMem’: mmdbapi4.c:474:13: warning: unused variable ‘iCoordSets’ [-Wunused-variable] 474 | Int4 iCoordSets = 0; | ^~~~~~~~~~ mmdbapi4.c:465:20: warning: unused variable ‘pappThis’ [-Wunused-variable] 465 | AtomPntrsPtr pappThis = NULL; | ^~~~~~~~ mmdbapi4.c:464:27: warning: unused variable ‘pmspThis’ [-Wunused-variable] 464 | ModelSpacePointsPtr pmspThis = NULL; | ^~~~~~~~ mmdbapi4.c:463:28: warning: unused variable ‘pocThis’ [-Wunused-variable] 463 | AtomicOccupanciesPtr pocThis = NULL; | ^~~~~~~ mmdbapi4.c:458:34: warning: unused variable ‘paciThis’ [-Wunused-variable] 458 | AlternateConformationIdsPtr paciThis = NULL; | ^~~~~~~~ mmdbapi4.c: In function ‘RebuildChemGraphAsn’: mmdbapi4.c:931:15: warning: unused variable ‘bOK’ [-Wunused-variable] 931 | Boolean bOK = TRUE; | ^~~ mmdbapi4.c: In function ‘WriteASNChemGraphOnly’: mmdbapi4.c:1192:10: warning: unused variable ‘iHash’ [-Wunused-variable] 1192 | Int4 iHash = 0; | ^~~~~ mmdbapi4.c: In function ‘FreeSingleModel’: mmdbapi4.c:1336:11: warning: unused variable ‘pdnml’ [-Wunused-variable] 1336 | PDNML pdnml = NULL; | ^~~~~ mmdbapi4.c:1332:22: warning: unused variable ‘pbsmTemp’ [-Wunused-variable] 1332 | BiostrucModelPtr pbsmTemp = NULL; | ^~~~~~~~ mmdbapi4.c: In function ‘WriteAsnModelList’: mmdbapi4.c:1505:14: warning: unused variable ‘paioAIP’ [-Wunused-variable] 1505 | AsnIoPtr paioAIP = NULL; | ^~~~~~~ mmdbapi4.c:1502:11: warning: unused variable ‘pmldThis’ [-Wunused-variable] 1502 | PMLD pmldThis = NULL; | ^~~~~~~~ mmdbapi4.c:1498:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1498 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ mmdbapi4.c:1496:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable] 1496 | BiostrucModelPtr pbsmThis = NULL; | ^~~~~~~~ mmdbapi4.c:1495:17: warning: unused variable ‘pBSThis’ [-Wunused-variable] 1495 | BiostrucPtr pBSThis = NULL; | ^~~~~~~ mmdbapi4.c:1494:13: warning: unused variable ‘bFirst’ [-Wunused-variable] 1494 | Boolean bFirst = TRUE; | ^~~~~~ mmdbapi4.c:1493:10: warning: unused variable ‘iTest’ [-Wunused-variable] 1493 | Int2 iTest = 0; | ^~~~~ mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’: mmdbapi4.c:1741:19: warning: unused variable ‘loc1’ [-Wunused-variable] 1741 | ValNodePtr loc1 = NULL; | ^~~~ mmdbapi4.c: In function ‘WriteAsnModelList’: mmdbapi4.c:1632:13: warning: ‘bRet’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1632 | return bRet; | ^~~~ mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’: mmdbapi4.c:1828:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=] 1828 | sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/mmdbapi1.h:232, from ../include/mmdbapi.h:92, from mmdbapi4.c:106: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdbapi4.c:1872:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1872 | dsp->ids->next = slavesip; | ~~~~~~~~~~~~~~~^~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mmdbentr.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vastsubs.c vastsubs.c: In function ‘LoadSubsetTable’: vastsubs.c:212:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fscanf(fd, "%d", &ndoms); | ^~~~~~~~~~~~~~~~~~~~~~~~ vastsubs.c:239:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 239 | fscanf(fd, "%d", &nsubs); | ^~~~~~~~~~~~~~~~~~~~~~~~ vastsubs.c:258:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 258 | fscanf(fd, "%d", &j); | ^~~~~~~~~~~~~~~~~~~~ vastsubs.c:287:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 287 | fscanf(fd, "%8c", domid); | ^~~~~~~~~~~~~~~~~~~~~~~~ vastsubs.c:296:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 296 | fscanf(fd, "%d", &n); | ^~~~~~~~~~~~~~~~~~~~ vastsubs.c:302:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 302 | fscanf(fd, "%d %d %d", &subset[j], &grps[j], &ranks[j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vastsubs.c:304:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 304 | fscanf(fd, "\n"); | ^~~~~~~~~~~~~~~~ vastsubs.c:275:31: warning: ‘len’ may be used uninitialized in this function [-Wmaybe-uninitialized] 275 | SubsetArray[strindex + len++] = ch; | ~~~^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prunebsc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/prunebsc.h:10, from prunebsc.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ prunebsc.c: In function ‘PruneFeatureSet’: prunebsc.c:220:22: warning: variable ‘bsfpDie’ set but not used [-Wunused-but-set-variable] 220 | BiostrucFeaturePtr bsfpDie, bsfp, bsfpnew = NULL; | ^~~~~~~ prunebsc.c: In function ‘PruneModel’: prunebsc.c:272:30: warning: variable ‘mcsDie’ set but not used [-Wunused-but-set-variable] 272 | ModelCoordinateSetPtr mcs, mcsDie, mcsnew = NULL; | ^~~~~~ prunebsc.c: In function ‘PruneBiostruc’: prunebsc.c:559:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 559 | if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name)) | ^~~ prunebsc.c:574:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 574 | if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name)) | ^~~ prunebsc.c:663:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 663 | if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name)) | ^~~ In file included from ../include/ncbi.h:62, from ../include/prunebsc.h:10, from prunebsc.c:34: ../include/ncbistr.h:339:20: warning: ‘feature_name’ may be used uninitialized in this function [-Wmaybe-uninitialized] 339 | #define StringICmp Nlm_StringICmp | ^~~~~~~~~~~~~~ prunebsc.c:522:25: note: ‘feature_name’ was declared here 522 | CharPtr chnid, hetid, feature_name; | ^~~~~~~~~~~~ prunebsc.c:649:23: warning: ‘pirbnew’ may be used uninitialized in this function [-Wmaybe-uninitialized] 649 | pirbnew->next = pirb; | ~~~~~~~~~~~~~~^~~~~~ prunebsc.c:695:18: warning: ‘mol_id’ may be used uninitialized in this function [-Wmaybe-uninitialized] 695 | bsmpHead = PruneModel(bsmp, pvnIds, mol_id); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prunebsc.c:591:26: warning: ‘currenthet’ may be used uninitialized in this function [-Wmaybe-uninitialized] 591 | currenthet->next = het; | ~~~~~~~~~~~~~~~~~^~~~~ prunebsc.c:562:9: warning: ‘chnid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 562 | if (*chnid == *chain) | ^~~~~~ prunebsc.c:182:7: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] 182 | switch(mtype) | ^~~~~~ prunebsc.c:173:8: note: ‘mtype’ was declared here 173 | Int4 mtype, molecule_id; | ^~~~~ prunebsc.c:102:8: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] 102 | Int4 mtype; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcdd.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objcdd.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objcdd.c: In function ‘CddIdFree’: objcdd.c:53:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 53 | Pointer pnt; | ^~~ objcdd.c: In function ‘CddIdAsnRead’: objcdd.c:85:12: warning: unused variable ‘isError’ [-Wunused-variable] 85 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddIdSetAsnRead’: objcdd.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 248 | AsnReadFunc func; | ^~~~ objcdd.c:245:12: warning: unused variable ‘av’ [-Wunused-variable] 245 | DataVal av; | ^~ objcdd.c: In function ‘CddAsnRead’: objcdd.c:402:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 402 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘CddSetAsnRead’: objcdd.c:798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 798 | AsnReadFunc func; | ^~~~ objcdd.c:795:12: warning: unused variable ‘av’ [-Wunused-variable] 795 | DataVal av; | ^~ objcdd.c: In function ‘CddTreeAsnRead’: objcdd.c:935:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 935 | AsnReadFunc func; | ^~~~ objcdd.c:934:12: warning: unused variable ‘isError’ [-Wunused-variable] 934 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddTreeSetAsnRead’: objcdd.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1147 | AsnReadFunc func; | ^~~~ objcdd.c:1144:12: warning: unused variable ‘av’ [-Wunused-variable] 1144 | DataVal av; | ^~ objcdd.c: In function ‘CddPrefNodesAsnRead’: objcdd.c:1281:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1281 | AsnReadFunc func; | ^~~~ objcdd.c:1280:12: warning: unused variable ‘isError’ [-Wunused-variable] 1280 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddProjectAsnRead’: objcdd.c:1478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1478 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘CddOrgRefAsnRead’: objcdd.c:1668:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1668 | AsnReadFunc func; | ^~~~ objcdd.c:1667:12: warning: unused variable ‘isError’ [-Wunused-variable] 1667 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddOrgRefSetAsnRead’: objcdd.c:1838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1838 | AsnReadFunc func; | ^~~~ objcdd.c:1835:12: warning: unused variable ‘av’ [-Wunused-variable] 1835 | DataVal av; | ^~ objcdd.c: In function ‘CddPrefNodeDescrFree’: objcdd.c:1932:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1932 | Pointer pnt; | ^~~ objcdd.c: In function ‘CddPrefNodeDescrAsnRead’: objcdd.c:1967:12: warning: unused variable ‘isError’ [-Wunused-variable] 1967 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddPrefNodeDescrSetAsnRead’: objcdd.c:2130:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2130 | AsnReadFunc func; | ^~~~ objcdd.c:2127:12: warning: unused variable ‘av’ [-Wunused-variable] 2127 | DataVal av; | ^~ objcdd.c: In function ‘GlobalIdAsnRead’: objcdd.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2263 | AsnReadFunc func; | ^~~~ objcdd.c:2262:12: warning: unused variable ‘isError’ [-Wunused-variable] 2262 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddRepeatAsnRead’: objcdd.c:2450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2450 | AsnReadFunc func; | ^~~~ objcdd.c:2449:12: warning: unused variable ‘isError’ [-Wunused-variable] 2449 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddBookRefAsnRead’: objcdd.c:2627:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2627 | AsnReadFunc func; | ^~~~ objcdd.c:2626:12: warning: unused variable ‘isError’ [-Wunused-variable] 2626 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddDescrSetAsnRead’: objcdd.c:3183:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3183 | AsnReadFunc func; | ^~~~ objcdd.c:3180:12: warning: unused variable ‘av’ [-Wunused-variable] 3180 | DataVal av; | ^~ objcdd.c: In function ‘MatrixAsnRead’: objcdd.c:3315:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3315 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘TriangleAsnRead’: objcdd.c:3504:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3504 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘UpdateCommentFree’: objcdd.c:3641:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3641 | Pointer pnt; | ^~~ objcdd.c: In function ‘UpdateCommentAsnRead’: objcdd.c:3685:12: warning: unused variable ‘isError’ [-Wunused-variable] 3685 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘UpdateAlignAsnRead’: objcdd.c:3889:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3889 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘RejectIdAsnRead’: objcdd.c:4064:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4064 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘FeatureEvidenceFree’: objcdd.c:4188:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 4188 | Pointer pnt; | ^~~ objcdd.c: In function ‘FeatureEvidenceAsnRead’: objcdd.c:4232:12: warning: unused variable ‘isError’ [-Wunused-variable] 4232 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘AlignAnnotAsnRead’: objcdd.c:4437:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4437 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘AlignAnnotSetAsnRead’: objcdd.c:4606:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4606 | AsnReadFunc func; | ^~~~ objcdd.c:4603:12: warning: unused variable ‘av’ [-Wunused-variable] 4603 | DataVal av; | ^~ objcdd.c: In function ‘DomainParentAsnRead’: objcdd.c:4738:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4738 | AsnReadFunc func; | ^~~~ objcdd.c:4737:12: warning: unused variable ‘isError’ [-Wunused-variable] 4737 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘SequenceTreeAsnRead’: objcdd.c:4919:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4919 | AsnReadFunc func; | ^~~~ objcdd.c:4918:12: warning: unused variable ‘isError’ [-Wunused-variable] 4918 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘AlgorithmTypeAsnRead’: objcdd.c:5107:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5107 | AsnReadFunc func; | ^~~~ objcdd.c:5106:12: warning: unused variable ‘isError’ [-Wunused-variable] 5106 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘SeqTreeNodeAsnRead’: objcdd.c:5410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5410 | AsnReadFunc func; | ^~~~ objcdd.c:5409:12: warning: unused variable ‘isError’ [-Wunused-variable] 5409 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘Children_footprintAsnRead’: objcdd.c:5595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5595 | AsnReadFunc func; | ^~~~ objcdd.c:5594:12: warning: unused variable ‘isError’ [-Wunused-variable] 5594 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘NodeAnnotationAsnRead’: objcdd.c:5887:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5887 | AsnReadFunc func; | ^~~~ objcdd.c:5886:12: warning: unused variable ‘isError’ [-Wunused-variable] 5886 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddViewerRectAsnRead’: objcdd.c:6053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6053 | AsnReadFunc func; | ^~~~ objcdd.c:6052:12: warning: unused variable ‘isError’ [-Wunused-variable] 6052 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddViewerAsnRead’: objcdd.c:6235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6235 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘CddScriptAsnRead’: objcdd.c:6410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6410 | AsnReadFunc func; | ^~~~ objcdd.c:6409:12: warning: unused variable ‘isError’ [-Wunused-variable] 6409 | Boolean isError = FALSE; | ^~~~~~~ In file included from objcdd.c:6: objcdd.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from objcdd.c:6: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from objcdd.c:7: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objcdd.c: In function ‘CddIdAsnRead’: objcdd.c:134:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 134 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘CddPrefNodeDescrAsnRead’: objcdd.c:2016:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2016 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘CddDescrAsnRead’: objcdd.c:3007:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3007 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘UpdateCommentAsnRead’: objcdd.c:3746:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3746 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘FeatureEvidenceAsnRead’: objcdd.c:4293:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4293 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘SeqTreeNodeAsnRead’: objcdd.c:5561:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5561 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c:5510:10: note: ‘choice’ was declared here 5510 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cddutil.c:336: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cddutil.c: In function ‘CddGetPmIds’: cddutil.c:649:17: warning: unused variable ‘bRefOpen’ [-Wunused-variable] 649 | Boolean bRefOpen = FALSE; | ^~~~~~~~ cddutil.c: In function ‘CddGetAnnotNames’: cddutil.c:807:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 807 | ValNodePtr vnp, vnpHead = NULL; | ^~~ cddutil.c: In function ‘CddCheckForRepeats’: cddutil.c:1034:7: warning: the address of ‘CddHasConsensus’ will always evaluate as ‘true’ [-Waddress] 1034 | if (!CddHasConsensus) return FALSE; | ^ cddutil.c:1013:23: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 1013 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddMSLDenDiagToMSLDenSeg’: cddutil.c:1663:30: warning: variable ‘lasts’ set but not used [-Wunused-but-set-variable] 1663 | Int4 lastm, lasts; | ^~~~~ cddutil.c:1663:23: warning: variable ‘lastm’ set but not used [-Wunused-but-set-variable] 1663 | Int4 lastm, lasts; | ^~~~~ cddutil.c: In function ‘SeqAlignInform’: cddutil.c:1938:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 1938 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddAlignInform’: cddutil.c:2125:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2125 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddPssmInform’: cddutil.c:2248:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2248 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddPosFreqInform’: cddutil.c:2306:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2306 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddDenDiagCposComputation’: cddutil.c:2368:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable] 2368 | ValNodePtr newRow, RowHead; | ^~~~~~~ cddutil.c:2365:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2365 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddCposComputation’: cddutil.c:2571:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable] 2571 | ValNodePtr newRow, RowHead; | ^~~~~~~ cddutil.c:2568:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2568 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddRetrieveBioseqById’: cddutil.c:3379:15: warning: unused variable ‘retcode’ [-Wunused-variable] 3379 | Int2 retcode = 1; | ^~~~~~~ cddutil.c:3377:15: warning: unused variable ‘uid’ [-Wunused-variable] 3377 | Int4 uid = 0; | ^~~ cddutil.c: In function ‘CddCalculateTriangle’: cddutil.c:3534:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3534 | if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL; | ^~ cddutil.c:3534:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3534 | if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL; | ^~ cddutil.c: In function ‘CddCalculateQuerySim’: cddutil.c:3653:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3653 | if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL; | ^~ cddutil.c:3653:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3653 | if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL; | ^~ cddutil.c: In function ‘CddConsensus’: cddutil.c:3853:49: warning: variable ‘m_end’ set but not used [-Wunused-but-set-variable] 3853 | Int4 m_last, m_frst, s_insert, m_end; | ^~~~~ cddutil.c: In function ‘CddCposCompPart1’: cddutil.c:4247:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 4247 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddGetNewIndexForThreading’: cddutil.c:4392:14: warning: unused variable ‘Index’ [-Wunused-variable] 4392 | Int4 i, Index=0; | ^~~~~ cddutil.c: In function ‘CddCposComp’: cddutil.c:4474:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable] 4474 | ValNodePtr newRow, RowHead; | ^~~~~~~ cddutil.c: In function ‘CddDenDiagCposComp2KBP’: cddutil.c:4745:59: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable] 4745 | ValNodePtr ColumnHead, LetterHead, newRow, RowHead, newLetter; | ^~~~~~~ cddutil.c: In function ‘CddDumpTaxLinks’: cddutil.c:5727:16: warning: unused variable ‘txid’ [-Wunused-variable] 5727 | Int4 txid = 0, gi = 0; | ^~~~ cddutil.c: At top level: cddutil.c:6267:1: warning: "/*" within comment [-Wcomment] 6267 | /*---------------------------------------------------------------------------*/ | In file included from ../include/cddutil.h:205, from cddutil.c:353: ../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function] 642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function] 643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function] 666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr )); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function] 667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function] 668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cddutil.c:353: ../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function] 589 | static SeqIdPtr CddFindSeqIdInSeqLoc(SeqLocPtr location); | ^~~~~~~~~~~~~~~~~~~~ cddutil.c:4661:16: warning: ‘CddtakeMatrixCheckpoint’ defined but not used [-Wunused-function] 4661 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch, | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from cddutil.c:349: ../include/cdd.h:343:21: warning: ‘amp’ defined but not used [-Wunused-variable] 343 | static AsnModulePtr amp = ampx; | ^~~ ../include/cdd.h:342:19: warning: ‘at’ defined but not used [-Wunused-variable] 342 | static AsnTypePtr at = atx; | ^~ ../include/cdd.h:341:23: warning: ‘avn’ defined but not used [-Wunused-variable] 341 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/cdd.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "cdd.h24"; | ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from cddutil.c:336: In function ‘strncpy’, inlined from ‘CddRegularizeFileName’ at cddutil.c:984:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from cddutil.c:336: cddutil.c: In function ‘CddRegularizeFileName’: ../include/ncbistr.h:279:20: note: length computed here 279 | #define Nlm_StrLen strlen cddutil.c:984:26: note: in expansion of macro ‘Nlm_StrLen’ 984 | Nlm_StrNCpy(cAcc,cIn,Nlm_StrLen(cIn)-Nlm_StrLen(cEx)); | ^~~~~~~~~~ cddutil.c: In function ‘CddCopyMSLDenDiag’: cddutil.c:3015:25: warning: ‘ddpTail’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3015 | ddpTail->next = ddpNew; | ~~~~~~~~~~~~~~^~~~~~~~ In file included from ../include/ncbi.h:59, from cddutil.c:336: cddutil.c: In function ‘CddCalculateTriangle’: ../include/ncbimem.h:232:23: warning: ‘buffer1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ cddutil.c:3415:19: note: ‘buffer1’ was declared here 3415 | Uint1Ptr buffer1, buffer2, buffer3; | ^~~~~~~ cddutil.c:3524:22: warning: ‘pscTail’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3524 | pscTail->next = psc; pscTail = psc; psc = NULL; | ~~~~~~~~~~~~~~^~~~~ cddutil.c: In function ‘CddDenDiagCposComp2KBP’: cddutil.c:4974:11: warning: ‘pssm’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4974 | return(pssm); | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddposutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cddposutil.c:119: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cddposutil.c: In function ‘CddfindThreshSequences’: cddposutil.c:359:15: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable] 359 | SeqIdPtr thisId; /* Ids of target sequences in current SeqAlign */ | ^~~~~~ cddposutil.c: In function ‘CddfindDenseDiagThreshSequences’: cddposutil.c:386:16: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable] 386 | SeqIdPtr thisId; /* Ids of target sequences in current SeqAlign */ | ^~~~~~ cddposutil.c: In function ‘CddposFreqsToMatrix’: cddposutil.c:1038:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4)) + (sizetype)((unsigned int)a * 4))’ may be undefined [-Wsequence-point] 1038 | posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN; cddposutil.c: In function ‘CddposDenseDiagDemographics’: cddposutil.c:1094:17: warning: unused variable ‘is_new_id’ [-Wunused-variable] 1094 | Boolean is_new_id = FALSE; | ^~~~~~~~~ cddposutil.c:1093:17: warning: unused variable ‘segIndex’ [-Wunused-variable] 1093 | Int4 segIndex; /*Index for which piece we are at*/ | ^~~~~~~~ cddposutil.c:1092:25: warning: variable ‘startS’ set but not used [-Wunused-but-set-variable] 1092 | Int4 startQ, startS; /*Indices into array of starting positions*/ | ^~~~~~ cddposutil.c:1092:17: warning: variable ‘startQ’ set but not used [-Wunused-but-set-variable] 1092 | Int4 startQ, startS; /*Indices into array of starting positions*/ | ^~~~~~ cddposutil.c:1091:17: warning: unused variable ‘curId’ [-Wunused-variable] 1091 | SeqIdPtr curId; /*Used to compare seq. coming from different SeqAligns*/ | ^~~~~ cddposutil.c: In function ‘CddSetUpSearchInternalByLoc’: cddposutil.c:1246:39: warning: unused variable ‘last_length_adjustment’ [-Wunused-variable] 1246 | index, length, length_adjustment=0, last_length_adjustment, min_query_length; | ^~~~~~~~~~~~~~~~~~~~~~ cddposutil.c: In function ‘CddSetUpSearchWithReadDb’: cddposutil.c:2040:43: warning: variable ‘final_db_seq’ set but not used [-Wunused-but-set-variable] 2040 | Int4 final_virtual_db_seq=0, final_db_seq=0; | ^~~~~~~~~~~~ cddposutil.c:2006:28: warning: unused variable ‘virtual_oid_bit’ [-Wunused-variable] 2006 | Uint4 oid_bit, virtual_oid_bit; | ^~~~~~~~~~~~~~~ cddposutil.c:2006:19: warning: unused variable ‘oid_bit’ [-Wunused-variable] 2006 | Uint4 oid_bit, virtual_oid_bit; | ^~~~~~~ cddposutil.c:2005:30: warning: unused variable ‘virtual_mask_index’ [-Wunused-variable] 2005 | Int4 mask_index, virtual_mask_index; | ^~~~~~~~~~~~~~~~~~ cddposutil.c:2005:18: warning: unused variable ‘mask_index’ [-Wunused-variable] 2005 | Int4 mask_index, virtual_mask_index; | ^~~~~~~~~~ cddposutil.c:2004:19: warning: unused variable ‘alias_oidlist’ [-Wunused-variable] 2004 | OIDListPtr alias_oidlist; | ^~~~~~~~~~~~~ cddposutil.c:2003:19: warning: unused variable ‘use_private_gilist’ [-Wunused-variable] 2003 | Boolean use_private_gilist = FALSE; | ^~~~~~~~~~~~~~~~~~ cddposutil.c:2000:20: warning: unused variable ‘vnp’ [-Wunused-variable] 2000 | ValNodePtr vnp; | ^~~ cddposutil.c: In function ‘CddposReadAlignment’: cddposutil.c:2226:16: warning: variable ‘alignPos’ set but not used [-Wunused-but-set-variable] 2226 | Int4 alignPos, queryOffset, subjectOffset, matchLength; | ^~~~~~~~ In file included from ../include/cddutil.h:205, from cddposutil.c:131: cddposutil.c: At top level: ../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function] 642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function] 643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function] 666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr )); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function] 667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function] 668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cddposutil.c:131: ../include/cddutil.h:507:27: warning: ‘CddReadBlastOptions’ declared ‘static’ but never defined [-Wunused-function] 507 | static PGPBlastOptionsPtr CddReadBlastOptions(BioseqPtr bsp, Int4 iPseudo, CharPtr matrix_name); | ^~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:512:13: warning: ‘BlastKarlinBlkCopy’ declared ‘static’ but never defined [-Wunused-function] 512 | static void BlastKarlinBlkCopy(BLAST_KarlinBlkPtr kbp_in,BLAST_KarlinBlkPtr kbp_out); | ^~~~~~~~~~~~~~~~~~ ../include/cddutil.h:516:13: warning: ‘CddputMatrixKbp’ declared ‘static’ but never defined [-Wunused-function] 516 | static void CddputMatrixKbp(FILE *checkFile, BLAST_KarlinBlkPtr kbp, | ^~~~~~~~~~~~~~~ ../include/cddutil.h:518:13: warning: ‘CddputMatrixMatrix’ declared ‘static’ but never defined [-Wunused-function] 518 | static void CddputMatrixMatrix(FILE *checkFile, | ^~~~~~~~~~~~~~~~~~ ../include/cddutil.h:522:16: warning: ‘CddtakeMatrixCheckpoint’ declared ‘static’ but never defined [-Wunused-function] 522 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch, | ^~~~~~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function] 589 | static SeqIdPtr CddFindSeqIdInSeqLoc(SeqLocPtr location); | ^~~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:591:25: warning: ‘CddRelocateSeqLoc’ declared ‘static’ but never defined [-Wunused-function] 591 | static void CddRelocateSeqLoc(SeqLocPtr location, SeqIdPtr sip, Int4 *ali); | ^~~~~~~~~~~~~~~~~ ../include/cddutil.h:592:25: warning: ‘CddSeqLocInExpAlign’ declared ‘static’ but never defined [-Wunused-function] 592 | static Int4 CddSeqLocInExpAlign(SeqLocPtr location, CddExpAlignPtr eap); | ^~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:593:25: warning: ‘CddFindSeqIdInAlignAnnot’ declared ‘static’ but never defined [-Wunused-function] 593 | static SeqIdPtr CddFindSeqIdInAlignAnnot(AlignAnnotPtr oldannot); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:623:24: warning: ‘HitYet’ declared ‘static’ but never defined [-Wunused-function] 623 | static Boolean HitYet(Int4Ptr retlist, Int4 index, Int4 i); | ^~~~~~ ../include/cddutil.h:649:16: warning: ‘CddFixForXML’ declared ‘static’ but never defined [-Wunused-function] 649 | static CharPtr CddFixForXML(CharPtr pc); | ^~~~~~~~~~~~ cddposutil.c:971:13: warning: ‘CddfreePosFreqs’ defined but not used [-Wunused-function] 971 | static void CddfreePosFreqs(Nlm_FloatHi ** posFreqs, Int4 length) | ^~~~~~~~~~~~~~~ cddposutil.c: In function ‘CddposComputeSequenceWeights’: cddposutil.c:840:35: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized] 840 | posSearch->posSigma[qplace] = intervalSigma; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ cddposutil.c:829:10: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized] 829 | if (Sigma > 0) { | ^ cddposutil.c: In function ‘CddposDemographics’: cddposutil.c:1199:24: warning: ‘retrievalOffset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1199 | subjectOffset = curSegs->starts[startS] - retrievalOffset; | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cddposutil.c: In function ‘CddSetUpSearchWithReadDb’: cddposutil.c:1740:48: warning: ‘min_query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1740 | if( 0 != BlastComputeLengthAdjustment(1/min_query_length, | ~^~~~~~~~~~~~~~~~~ cddposutil.c:1246:63: note: ‘min_query_length’ was declared here 1246 | index, length, length_adjustment=0, last_length_adjustment, min_query_length; | ^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmime.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmime.c:76: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmime.c: In function ‘NcbiMimeAsn1Free’: objmime.c:126:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 126 | Pointer pnt; | ^~~ objmime.c: In function ‘NcbiMimeAsn1AsnRead’: objmime.c:173:12: warning: unused variable ‘isError’ [-Wunused-variable] 173 | Boolean isError = FALSE; | ^~~~~~~ objmime.c: In function ‘Data_dataFree’: objmime.c:382:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 382 | Pointer pnt; | ^~~ objmime.c: In function ‘EntrezGeneralAsnRead’: objmime.c:428:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 428 | AsnReadFunc func; | ^~~~ objmime.c:427:12: warning: unused variable ‘isError’ [-Wunused-variable] 427 | Boolean isError = FALSE; | ^~~~~~~ objmime.c: In function ‘Data_dataAsnRead’: objmime.c:522:12: warning: unused variable ‘isError’ [-Wunused-variable] 522 | Boolean isError = FALSE; | ^~~~~~~ objmime.c: In function ‘BiostrucAlignAsnRead’: objmime.c:801:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 801 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘BiostrucAlignSeqAsnRead’: objmime.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1027 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘BiostrucSeqAsnRead’: objmime.c:1220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1220 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘BiostrucSeqsAsnRead’: objmime.c:1415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1415 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘SeqAlignData_seq_align_dataFree’: objmime.c:1613:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1613 | Pointer pnt; | ^~~ objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’: objmime.c:1647:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1647 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘SeqAlignData_seq_align_dataAsnRead’: objmime.c:1734:12: warning: unused variable ‘isError’ [-Wunused-variable] 1734 | Boolean isError = FALSE; | ^~~~~~~ objmime.c: In function ‘BundleSeqsAlignsAsnRead’: objmime.c:1973:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1973 | AsnReadFunc func; | ^~~~ In file included from ../include/mapmime.h:4, from objmime.c:81: objmime.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/mapmime.h:4, from objmime.c:81: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/mapmime.h:6, from objmime.c:81: ../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function] 642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function] 643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function] 666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr )); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function] 667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function] 668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ objmime.c: In function ‘NcbiMimeAsn1AsnRead’: objmime.c:235:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmime.c: In function ‘EntrezGeneralAsnRead’: objmime.c:584:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 584 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmime.c:521:10: note: ‘choice’ was declared here 521 | Uint1 choice; | ^~~~~~ objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’: objmime.c:1780:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1780 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmime.c:1733:10: note: ‘choice’ was declared here 1733 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF strucapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from strucapi.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdalgs.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdatd.c thrdatd.c: In function ‘atd’: thrdatd.c:859:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 859 | for(i=0;ial[i]); printf("sai->al\n"); | ^~~ thrdatd.c:859:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 859 | for(i=0;ial[i]); printf("sai->al\n"); | ^~~~~~ thrdatd.c:860:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 860 | for(i=0;inmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n"); | ^~~ thrdatd.c:860:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 860 | for(i=0;inmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n"); | ^~~~~~ thrdatd.c:862:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 862 | for(i=0;ino[i]); printf("sli->no\n"); | ^~~ thrdatd.c:862:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 862 | for(i=0;ino[i]); printf("sli->no\n"); | ^~~~~~ thrdatd.c:863:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 863 | for(i=0;ico[i]); printf("sli->co\n"); | ^~~ thrdatd.c:863:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 863 | for(i=0;ico[i]); printf("sli->co\n"); | ^~~~~~ thrdatd.c:864:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 864 | for(i=0;inlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n"); | ^~~ thrdatd.c:864:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 864 | for(i=0;inlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n"); | ^~~~~~ thrdatd.c:865:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 865 | for(i=0;inmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n"); | ^~~ thrdatd.c:865:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 865 | for(i=0;inmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n"); | ^~~~~~ thrdatd.c:1014:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1014 | for(k=0;kal[k]); printf("sai->al\n"); | ^~~ thrdatd.c:1014:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1014 | for(k=0;kal[k]); printf("sai->al\n"); | ^~~~~~ thrdatd.c:1015:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1015 | for(k=0;ksq[k]); printf("sai->sq\n"); | ^~~ thrdatd.c:1015:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1015 | for(k=0;ksq[k]); printf("sai->sq\n"); | ^~~~~~ thrdatd.c:1017:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1017 | for(i=0;ino[i]); printf("sli->no\n"); | ^~~ thrdatd.c:1017:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1017 | for(i=0;ino[i]); printf("sli->no\n"); | ^~~~~~ thrdatd.c:1018:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1018 | for(i=0;ico[i]); printf("sli->co\n"); | ^~~ thrdatd.c:1018:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1018 | for(i=0;ico[i]); printf("sli->co\n"); | ^~~~~~ thrdatd.c:1019:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1019 | for(i=0;ilp[i]); printf("sli->lp\n"); | ^~~ thrdatd.c:1019:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1019 | for(i=0;ilp[i]); printf("sli->lp\n"); | ^~~~~~ thrdatd.c:1020:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1020 | for(i=0;icr[i]); printf("sli->cr\n"); | ^~~ thrdatd.c:1020:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1020 | for(i=0;icr[i]); printf("sli->cr\n"); | ^~~~~~ thrdatd.c:1244:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1244 | for(i=0;igss[i]); free(spe->gss); | ^~~ thrdatd.c:1244:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1244 | for(i=0;igss[i]); free(spe->gss); | ^~~~ thrdatd.c:1251:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1251 | for(i=0; inrr[i]); free(spn->nrr); | ^~~ thrdatd.c:1251:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1251 | for(i=0; inrr[i]); free(spn->nrr); | ^~~~ thrdatd.c:1255:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1255 | for(i=0; inrp[i]); free(spn->nrp); | ^~~ thrdatd.c:1255:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1255 | for(i=0; inrp[i]); free(spn->nrp); | ^~~~ thrdatd.c:1259:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1259 | for(i=0; inrf[i]); free(spn->nrf); | ^~~ thrdatd.c:1259:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1259 | for(i=0; inrf[i]); free(spn->nrf); | ^~~~ thrdatd.c:1260:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1260 | for(i=0; ifrf[i]); free(spn->frf); | ^~~ thrdatd.c:1260:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1260 | for(i=0; ifrf[i]); free(spn->frf); | ^~~~ thrdatd.c:201:8: warning: variable ‘hh’ set but not used [-Wunused-but-set-variable] 201 | float hh; | ^~ thrdatd.c:198:6: warning: variable ‘rf’ set but not used [-Wunused-but-set-variable] 198 | int rf; /* Reference position for a core element */ | ^~ thrdatd.c:188:14: warning: unused variable ‘m’ [-Wunused-variable] 188 | int i,j,k,l,m,n; /* Counters */ | ^ thrdatd.c:188:12: warning: unused variable ‘l’ [-Wunused-variable] 188 | int i,j,k,l,m,n; /* Counters */ | ^ thrdatd.c:171:6: warning: variable ‘nrp’ set but not used [-Wunused-but-set-variable] 171 | int nrp; /* Number of residue-peptide contacts in motif */ | ^~~ thrdatd.c:170:6: warning: variable ‘nrr’ set but not used [-Wunused-but-set-variable] 170 | int nrr; /* Number of residue-residue contacts in motif */ | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c thrdbwfi.c: In function ‘bwfi’: thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] 114 | } | ^ thrdbwfi.c:64:5: warning: ‘nt’ may be used uninitialized in this function [-Wmaybe-uninitialized] 64 | int nt; /* Number of threads within specified ensemble cutoff */ | ^~ thrdbwfi.c:89:20: warning: ‘nz’ may be used uninitialized in this function [-Wmaybe-uninitialized] 89 | cw=0.; ct=ttb->mx; for(i=0; i<=nz; i++) { | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpal.c thrdcpal.c: In function ‘cpal’: thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type] 210 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpll.c thrdcpll.c: In function ‘cpll’: thrdcpll.c:74:5: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable] 74 | int nrt; /* Number of residue types */ | ^~~ thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type] 229 | } | ^ thrdcpll.c:220:15: warning: ‘r2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 220 | cl->rf.t2[k]=r2; | ~~~~~~~~~~~~^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcprl.c thrdcprl.c: In function ‘cprl’: thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type] 261 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcxei.c thrdcxei.c: In function ‘cxei’: thrdcxei.c:94:15: warning: variable ‘ms’ set but not used [-Wunused-but-set-variable] 94 | int ntot, ms; | ^~ thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type] 205 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrddgri.c thrddgri.c: In function ‘g’: thrddgri.c:72:5: warning: variable ‘s0’ set but not used [-Wunused-but-set-variable] 72 | int s0; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsal0.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalr.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalu.c thrdsalu.c: In function ‘salu’: thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type] 83 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c thrdsgoi.c: In function ‘sgoi’: thrdsgoi.c:98:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 98 | for(i=0; i>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslo0.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslor.c thrdslor.c: In function ‘slor’: thrdslor.c:90:6: warning: ‘mp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 90 | int *mp; /* Motif-derived loop length limits */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslou.c thrdslou.c: In function ‘slou’: thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] 114 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspci.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspea.c thrdspea.c: In function ‘spea’: thrdspea.c:91:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable] 91 | int nrt; /* Number of residue types in potential */ | ^~~ thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type] 189 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspel.c thrdspel.c: In function ‘spel’: thrdspel.c:88:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable] 88 | int nrt; /* Number of residue types in potential */ | ^~~ thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type] 188 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspni.c thrdspni.c: In function ‘spni’: thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type] 238 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttb0.c thrdttb0.c: In function ‘ttb0’: thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type] 75 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttbi.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdzsc.c thrdzsc.c: In function ‘zsc’: thrdzsc.c:107:7: warning: unused variable ‘gs’ [-Wunused-variable] 107 | int g,gs; | ^~ thrdzsc.c:102:18: warning: unused variable ‘zsc’ [-Wunused-variable] 102 | float tg,tgp,tgm,zsc; /* Energy of shuffled sequence */ | ^~~ thrdzsc.c:95:5: warning: unused variable ‘ps’ [-Wunused-variable] 95 | int ps,ms,cs, | ^~ thrdzsc.c:80:5: warning: unused variable ‘temp’ [-Wunused-variable] 80 | int temp; /* Random index of the query sequence */ | ^~~~ thrdzsc.c:79:2: warning: unused variable ‘kk’ [-Wunused-variable] 79 | kk,itr,ii,jj; /* Counters */ | ^~ thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type] 369 | } | ^ thrdzsc.c:357:39: warning: ‘tg_max’ may be used uninitialized in this function [-Wmaybe-uninitialized] 357 | ttb->zsc[i_max]=ScalingFactor*(tg_max-avg)/disp; | ~~~~~~~^~~~~ rm -f libncbimmdb.a ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbimmdb.a ../lib ranlib ../lib/libncbimmdb.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF csim.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from csim.c:74: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ csim.c: In function ‘set_pam_200’: csim.c:163:29: warning: missing braces around initializer [-Wmissing-braces] 163 | static Int2 wgts[23][23] = { /* the PAM200 matrix */ | ^ 164 | 165 | 2,-2, 0, 0,-2,-1, 0, 1,-1,-1,-2,-1,-1,-3, 1, 1, 1,-5,-3, 0, 1, 1, 0, | { } 166 | -2, 5, 0,-1,-3, 1,-1,-3, 1,-2,-2, 2, 0,-3, 0, 0,-1, 1,-4,-2, 0, 1, 0, | { } 167 | 0, 0, 2, 2,-3, 0, 1, 0, 1,-1,-2, 1,-2,-2, 0, 1, 0,-4,-1,-2, 3, 2, 0, | { } 168 | 0,-1, 2, 3,-4, 1, 3, 0, 0,-2,-3, 0,-2,-4,-1, 0, 0,-6,-3,-2, 4, 3, 0, | { } 169 | -2,-3,-3,-4, 8,-4,-4,-3,-3,-2,-5,-4,-4,-4,-2, 0,-2,-6, 0,-2,-3,-3, 0, | { } 170 | -1, 1, 0, 1,-4, 4, 2,-1, 2,-2,-1, 0,-1,-4, 0,-1,-1,-4,-3,-2, 2, 4, 0, | { } 171 | 0,-1, 1, 3,-4, 2, 3, 0, 0,-2,-3, 0,-2,-4, 0, 0, 0,-6,-3,-2, 3, 4, 0, | { } 172 | 1,-3, 0, 0,-3,-1, 0, 4,-2,-2,-3,-2,-3,-3,-1, 1, 0,-5,-4,-1, 1, 0, 0, | { } 173 | -1, 1, 1, 0,-3, 2, 0,-2, 5,-2,-2, 0,-2,-1, 0,-1,-1,-3, 0,-2, 2, 2, 0, | { } 174 | -1,-2,-1,-2,-2,-2,-2,-2,-2, 4, 2,-1, 2, 1,-2,-1, 0,-5,-1, 3,-1,-1, 0, | { } 175 | -2,-2,-2,-3,-5,-1,-3,-3,-2, 2, 4,-2, 3, 1,-2,-2,-1,-4,-1, 1,-2,-1, 0, | { } 176 | -1, 2, 1, 0,-4, 0, 0,-2, 0,-1,-2, 4, 1,-4,-1, 0, 0,-3,-4,-2, 1, 1, 0, | { } 177 | -1, 0,-2,-2,-4,-1,-2,-3,-2, 2, 3, 1, 5, 0,-2,-1, 0,-4,-2, 1,-1, 0, 0, | { } 178 | -3,-3,-2,-4,-4,-4,-4,-3,-1, 1, 1,-4, 0, 7,-4,-2,-2, 0, 5,-1,-2,-3, 0, | { } 179 | 1, 0, 0,-1,-2, 0, 0,-1, 0,-2,-2,-1,-2,-4, 5, 1, 0,-5,-4,-1, 0, 1, 0, | { } 180 | 1, 0, 1, 0, 0,-1, 0, 1,-1,-1,-2, 0,-1,-2, 1, 2, 1,-2,-2,-1, 1, 1, 0, | { } 181 | 1,-1, 0, 0,-2,-1, 0, 0,-1, 0,-1, 0, 0,-2, 0, 1, 3,-4,-2, 0, 1, 0, 0, | { } 182 | -5, 1,-4,-6,-6,-4,-6,-5,-3,-5,-4,-3,-4, 0,-5,-2,-4,12, 0,-6,-3,-4, 0, | { } 183 | -3,-4,-1,-3, 0,-3,-3,-4, 0,-1,-1,-4,-2, 5,-4,-2,-2, 0, 7,-2,-1,-2, 0, | { } 184 | 0,-2,-2,-2,-2,-2,-2,-1,-2, 3, 1,-2, 1,-1,-1,-1, 0,-6,-2, 4,-1,-1, 0, | { } 185 | 1, 0, 3, 4,-3, 2, 3, 1, 2,-1,-2, 1,-1,-2, 0, 1, 1,-3,-1,-1, 4, 4, 0, | { } 186 | 1, 1, 2, 3,-3, 4, 4, 0, 2,-1,-1, 1, 0,-3, 1, 1, 0,-4,-2,-1, 4, 5, 0, | { } 187 | 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, | { 188 | }; | } csim.c:196:16: warning: array subscript has type ‘char’ [-Wchar-subscripts] 196 | V[achars[i]][achars[j]]=10*(wgts[i][j]); | ~~~~~~^~~ csim.c:196:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] 196 | V[achars[i]][achars[j]]=10*(wgts[i][j]); | ~~~~~~^~~ csim.c: In function ‘set_pam_file’: csim.c:228:18: warning: array subscript has type ‘char’ [-Wchar-subscripts] 228 | V[alph[i]][alph[j]]=(Int2)(10*weight); | ~~~~^~~ csim.c:228:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] 228 | V[alph[i]][alph[j]]=(Int2)(10*weight); | ~~~~^~~ csim.c: In function ‘big_pass’: csim.c:668:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 668 | va = v[A[i]]; | ~^~~ csim.c:692:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 692 | DIAG(i, j, c, p+va[B[j]]) /* diagonal */ | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c: In function ‘diff1’: csim.c:799:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 799 | va = v[A[1]]; | ~^~~ csim.c:805:23: warning: array subscript has type ‘char’ [-Wchar-subscripts] 805 | { c = va[B[j]] - ( GAP(j-1) + GAP(N-j) ); | ~^~~ csim.c:849:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 849 | va = v[A[i]]; | ~^~~ csim.c:853:45: warning: array subscript has type ‘char’ [-Wchar-subscripts] 853 | DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]]) | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:853:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 853 | DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]]) | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:874:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 874 | va = v[A[i+1]]; | ~^~~~~ csim.c:878:45: warning: array subscript has type ‘char’ [-Wchar-subscripts] 878 | DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]]) | ~^~~~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:878:53: warning: array subscript has type ‘char’ [-Wchar-subscripts] 878 | DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]]) | ~^~~~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:893:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 893 | if (c > midc || CC[j] != DD[j] && RR[j] == SS[j]) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ csim.c: In function ‘locate’: csim.c:974:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 974 | va = v[A[i]]; | ~^~~ csim.c:991:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 991 | DIAG(i, j, c, p+va[B[j]]) /* diagonal */ | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:1030:16: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1030 | va = v[A[(plist->m1)]]; | ~^~~~~~~~~~~~~ csim.c:1043:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1043 | DIAG((plist->m1), j, c, p+va[B[j]]) /* diagonal */ | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:1061:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1061 | if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~~~~~~^~~~~~~~~~ csim.c:1062:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1062 | || fi > rl && fj > cl ) ) | ~~~~~~~~^~~~~~~~~~ csim.c:1071:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1071 | if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~~~~~~^~~~~~~~~~ csim.c:1072:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1072 | || fi > rl && fj > cl ) ) | ~~~~~~~~^~~~~~~~~~ csim.c:1084:16: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1084 | va = v[B[(plist->n1)]]; | ~^~~~~~~~~~~~~ csim.c:1110:42: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1110 | DIAG(i, (plist->n1), c, p+va[A[i]]) | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:1128:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1128 | if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~~~~~~^~~~~~~~~~ csim.c:1129:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1129 | || fi > rl && fj > cl ) ) | ~~~~~~~~^~~~~~~~~~ csim.c:1138:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1138 | if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~~~~~~^~~~~~~~~~ csim.c:1139:47: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1139 | || fi > rl && fj > cl ) ) | ~~~~~~~~^~~~~~~~~~ csim.c:1144:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1144 | if ( (plist->m1) == 1 && (plist->n1) == 1 || no_cross(flag, plist, &rl, &cl) ) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ csim.c: In function ‘small_pass’: csim.c:1186:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1186 | va = v[A[i]]; | ~^~~ csim.c:1212:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1212 | DIAG(i, j, c, p+va[B[j]]) /* diagonal */ | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c: In function ‘display’: csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1360 | if (i < M || j < N) | ^ csim.c: In function ‘set_pam_file’: csim.c:227:12: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 227 | fscanf(fp, "%f", &weight); /**get the matrix**/ | ^~~~~~~~~~~~~~~~~~~~~~~~~ At top level: csim.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: csim.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ csim.c: In function ‘SIM’: csim.c:1071:62: warning: ‘dj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1071 | if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~^~~~ csim.c:928:23: note: ‘dj’ was declared here 928 | register Int4 di, dj; /* end-point associated with d */ | ^~ csim.c:1071:51: warning: ‘di’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1071 | if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~^~~~ csim.c:928:19: note: ‘di’ was declared here 928 | register Int4 di, dj; /* end-point associated with d */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF db_slist.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/list.h:56, from db_slist.c:97: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ db_slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: db_slist.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dust.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from dust.c:102: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: dust.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ dust.c: In function ‘slpDust.constprop’: dust.c:655:23: warning: ‘sintp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 655 | slp->data.ptrvalue = (Pointer) sintp; | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dust.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from blast_dust.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_dust.c:39:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 39 | static char const rcsid[] = | ^~~~~ blast_dust.c: In function ‘s_SlpDust’: blast_dust.c:348:23: warning: ‘sintp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 348 | slp->data.ptrvalue = (Pointer) sintp; | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF falign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from falign.c:92: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ falign.c: In function ‘fbld_table’: falign.c:490:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 490 | ecode = (ecode << 2) + encoding[*++q]; | ^~~~ falign.c:494:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 494 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘bbld_table’: falign.c:517:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 517 | ecode = (ecode << 2) + encoding[*--q]; | ^~~~ falign.c:521:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 521 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘rcbld_table’: falign.c:544:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 544 | ecode = (ecode << 2) + encoding[*--q]; | ^~~~ falign.c:548:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 548 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘ex_table’: falign.c:567:43: warning: array subscript has type ‘char’ [-Wchar-subscripts] 567 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘free_all’: falign.c:668:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 668 | if (df = cdiag_prev[l]) { | ^~ falign.c: In function ‘scan’: falign.c:688:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 688 | ecode = (ecode << 2) + encoding[*++q]; | ^~~~ falign.c:694:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 694 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c:710:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 710 | if (df = diag_prev[len1+len2-1-pos]) { | ^~ falign.c:719:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 719 | if (df=diag_prev[l]) { | ^~ falign.c: In function ‘fscan’: falign.c:763:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 763 | ecode = (ecode << 2) + encoding[*++q]; | ^~~~ falign.c:769:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 769 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘bscan’: falign.c:794:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 794 | ecode = (ecode << 2) + encoding[*--q]; | ^~~~ falign.c:800:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 800 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘rfscan’: falign.c:870:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 870 | ecode = (ecode << 2) + encoding[*++q]; | ^~~~ falign.c:876:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 876 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c:881:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 881 | if (df = diag_prev[len1+se2-pos]) { | ^~ falign.c:889:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 889 | if (df = diag_prev[len1+se2-pos]) { | ^~ falign.c: In function ‘trcscan’: falign.c:1476:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1476 | ecode = (ecode << 2) + encoding[*--q]; | ^~~~ falign.c:1482:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1482 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘rclocal’: falign.c:1547:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1547 | if (pf = diag_prev[ocur_diag]) { | ^~ falign.c: In function ‘enterS’: falign.c:1897:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1897 | if (s = findS(f->bgf)) { | ^ falign.c: In function ‘local’: falign.c:1958:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1958 | if (pf = diag_prev[cur_diag]) { | ^~ falign.c: In function ‘align’: falign.c:1999:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1999 | if (pf = cdiag_prev[cur_diag]) { | ^~ falign.c: In function ‘calign’: falign.c:2054:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2054 | if (pf = cdiag_prev[cur_diag]) { | ^~ falign.c: In function ‘malign’: falign.c:2109:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2109 | if (pf = cdiag_prev[cur_diag]) { | ^~ At top level: falign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: falign.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF g_any.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from g_any.c:89: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ g_any.c: In function ‘k_align’: g_any.c:212:12: warning: array subscript has type ‘char’ [-Wchar-subscripts] 212 | va = vv[A[i+1]]; | ~^~~~~ g_any.c:229:28: warning: array subscript has type ‘char’ [-Wchar-subscripts] 229 | if (j < J2) c = s + va[B[j+1]]; | ~^~~~~ g_any.c:319:10: warning: array subscript has type ‘char’ [-Wchar-subscripts] 319 | b2 = PP[t1][b1]; | ^ g_any.c:322:10: warning: array subscript has type ‘char’ [-Wchar-subscripts] 322 | t2 = PT[t1][b1]; | ^ g_any.c: In function ‘z_ALIGN’: g_any.c:367:7: warning: variable ‘check_score’ set but not used [-Wunused-but-set-variable] 367 | Int4 check_score; | ^~~~~~~~~~~ g_any.c: In function ‘CHECK_SCORE’: g_any.c:492:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 492 | score = vv[A[++i]][B[++j]] + score; | ~^~~~~ g_any.c:492:23: warning: array subscript has type ‘char’ [-Wchar-subscripts] 492 | score = vv[A[++i]][B[++j]] + score; | ~^~~~~ At top level: g_any.c:428:35: warning: ‘CLINE’ defined but not used [-Wunused-variable] 428 | static Char ALINE[51], BLINE[51], CLINE[51]; | ^~~~~ g_any.c:428:24: warning: ‘BLINE’ defined but not used [-Wunused-variable] 428 | static Char ALINE[51], BLINE[51], CLINE[51]; | ^~~~~ g_any.c:428:13: warning: ‘ALINE’ defined but not used [-Wunused-variable] 428 | static Char ALINE[51], BLINE[51], CLINE[51]; | ^~~~~ g_any.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: g_any.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim2.c sim2.c: In function ‘SIM2’: sim2.c:19:16: warning: unused variable ‘compB’ [-Wunused-variable] 19 | CharPtr A, B, compB = NULL; | ^~~~~ sim2.c:17:26: warning: unused variable ‘sapC’ [-Wunused-variable] 17 | SeqAlignPtr sap = NULL, sapC=NULL, out_sap, out_sapC; | ^~~~ At top level: sim2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: sim2.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from sim3.c:28: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sim3.c: In function ‘locate’: sim3.c:103:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 103 | ecode = (ecode << 2) + encoding[*p++]; | ^~~~ sim3.c:105:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 105 | ecode = ((ecode & mask) << 2) + encoding[*p++]; | ^~~~ sim3.c:113:49: warning: array subscript has type ‘char’ [-Wchar-subscripts] 113 | ecode = (ecode << 2) + encoding[*p++]; | ^~~~ sim3.c:115:58: warning: array subscript has type ‘char’ [-Wchar-subscripts] 115 | ecode = ((ecode & mask) << 2) + encoding[*p++]; | ^~~~ sim3.c:129:49: warning: array subscript has type ‘char’ [-Wchar-subscripts] 129 | ecode = (ecode << 2) + encoding[*p++]; | ^~~~ sim3.c:133:58: warning: array subscript has type ‘char’ [-Wchar-subscripts] 133 | ecode = ((ecode & mask) << 2) + encoding[*p++]; | ^~~~ sim3.c:152:46: warning: array subscript has type ‘char’ [-Wchar-subscripts] 152 | ecode1 = ((ecode1 & mask) << 2) + encoding[*q++]; | ^~~~ sim3.c:155:58: warning: array subscript has type ‘char’ [-Wchar-subscripts] 155 | ecode = ((ecode & mask) << 2) + encoding[*p++]; | ^~~~ At top level: sim3.c:1067:16: warning: ‘is_end_seg’ defined but not used [-Wunused-function] 1067 | static Boolean is_end_seg(EditScriptPtr curr, EditScriptPtr head) | ^~~~~~~~~~ sim3.c:1056:13: warning: ‘get_current_pos’ defined but not used [-Wunused-function] 1056 | static Int4 get_current_pos(Int4Ptr pos, Int4 length) | ^~~~~~~~~~~~~~~ sim3.c:1048:13: warning: ‘get_start_pos’ defined but not used [-Wunused-function] 1048 | static Int4 get_start_pos(SeqLocPtr slp) | ^~~~~~~~~~~~~ sim3.c:806:13: warning: ‘Print_Script’ defined but not used [-Wunused-function] 806 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, CharPtr A, CharPtr B) | ^~~~~~~~~~~~ sim3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: sim3.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ sim3.c: In function ‘locate’: sim3.c:230:17: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 230 | *j2 = paired_bj+1; | ~~~~~~~~~^~ sim3.c:229:6: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 229 | *j1 = paired_fj; | ~~~~^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from sim4.c:18: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sim4.c: In function ‘sim4x’: sim4.c:630:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 630 | while(i1 = sgp->Blist[i].next) { | ^~ sim4.c: In function ‘greedy’: sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1770 | if (row == 0 && col == 0) | ^ sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1794 | if (row == 0) | ^ sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1838 | if (col == 0) | ^ sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1962 | if (row == m && col == n) | ^ sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1991 | if (row == m) | ^ sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2037 | if (col == n) | ^ sim4.c: In function ‘DISPLAY’: sim4.c:2625:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2625 | if (a >= ALINE+50 || i >= M && j >= N) | ~~~~~~~^~~~~~~~~ At top level: sim4.c:2592:13: warning: ‘DISPLAY’ defined but not used [-Wunused-function] 2592 | static void DISPLAY(Int1 A[], Int1 B[], Int4 M, Int4 N, Int4 S[], Int4 AP, Int4 BP) | ^~~~~~~ sim4.c:2563:13: warning: ‘S2A’ defined but not used [-Wunused-function] 2563 | static void S2A(EditScriptPtr head, Int4Ptr S) | ^~~ sim4.c:2499:13: warning: ‘Print_Script’ defined but not used [-Wunused-function] 2499 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, data_t *data) | ^~~~~~~~~~~~ sim4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: sim4.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ sim4.c: In function ‘locate’: sim4.c:2919:19: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2919 | *j2 = paired_bj + 1; | ~~~~~~~~~~^~~ sim4.c:2918:7: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2918 | *j1 = paired_fj; | ~~~~^~~~~~~~~~~ sim4.c: In function ‘sim4x’: sim4.c:2112:37: warning: ‘forth’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2112 | if (m-min_row[back]>=max_row[forth]) { | ^ sim4.c:1609:18: note: ‘forth’ was declared here 1609 | Int4 back, forth; /* backward and forward limits at exit */ | ^~~~~ sim4.c:2112:22: warning: ‘back’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2112 | if (m-min_row[back]>=max_row[forth]) { | ^ sim4.c:1609:12: note: ‘back’ was declared here 1609 | Int4 back, forth; /* backward and forward limits at exit */ | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF simutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from simutil.c:103: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ simutil.c: In function ‘make_align’: simutil.c:495:9: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 495 | Uint1 strand; | ^~~~~~ At top level: simutil.c:848:16: warning: ‘is_alu_seq’ defined but not used [-Wunused-function] 848 | static Boolean is_alu_seq(CharPtr name) | ^~~~~~~~~~ simutil.c:814:16: warning: ‘re_cal_score’ defined but not used [-Wunused-function] 814 | static FloatHi re_cal_score(RecordEndsPtr o_rep, RecordEndsPtr n_rep) | ^~~~~~~~~~~~ simutil.c:344:17: warning: ‘convert’ defined but not used [-Wunused-function] 344 | static ScorePtr convert(Int4Ptr x, Int4Ptr y, Int4Ptr start, Int4Ptr length, Int4 n, SeqLocPtr locx, SeqLocPtr locy, Int2Ptr numseg, FloatHiPtr SegScores) | ^~~~~~~ simutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: simutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF slist.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/list.h:56, from slist.c:101: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: slist.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sec.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from sec.c:67: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sec.c: In function ‘Region’: sec.c:268:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 268 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:268:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 268 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:292:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 292 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:292:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 292 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:321:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 321 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:321:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 321 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:345:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 345 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:345:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 345 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:428:40: warning: array subscript has type ‘char’ [-Wchar-subscripts] 428 | diag_score = diag_score + V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:428:49: warning: array subscript has type ‘char’ [-Wchar-subscripts] 428 | diag_score = diag_score + V[seq1[i]][seq2[j]]; | ~~~~^~~ At top level: sec.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: sec.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ sec.c: In function ‘Region’: sec.c:504:11: warning: ‘old_l’ may be used uninitialized in this function [-Wmaybe-uninitialized] 504 | LB[i] = old_l; | ~~~~~~^~~~~~~ sec.c:72:37: warning: ‘ppj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 72 | #define Min(x,y) ((x) <= (y) ? (x) : (y)) | ^ sec.c:172:20: note: ‘ppj’ was declared here 172 | Int4 pi, pj, ppi, ppj; | ^~~ sec.c:172:15: warning: ‘ppi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 172 | Int4 pi, pj, ppi, ppj; | ^~~ sec.c:172:7: warning: ‘pi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 172 | Int4 pi, pj, ppi, ppj; | ^~ sec.c:72:37: warning: ‘ej’ may be used uninitialized in this function [-Wmaybe-uninitialized] 72 | #define Min(x,y) ((x) <= (y) ? (x) : (y)) | ^ sec.c:163:19: note: ‘ej’ was declared here 163 | Int4 bi, bj, ei, ej, t; | ^~ sec.c:163:15: warning: ‘ei’ may be used uninitialized in this function [-Wmaybe-uninitialized] 163 | Int4 bi, bj, ei, ej, t; | ^~ sec.c:71:37: warning: ‘bj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 71 | #define Max(x,y) ((x) >= (y) ? (x) : (y)) | ^ sec.c:163:11: note: ‘bj’ was declared here 163 | Int4 bi, bj, ei, ej, t; | ^~ sec.c:462:16: warning: ‘bi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 462 | MemFree(LB+bi); | ^ sec.c:463:16: warning: ‘RB’ may be used uninitialized in this function [-Wmaybe-uninitialized] 463 | MemFree(RB+bi); | ~~^~~ sec.c:462:16: warning: ‘LB’ may be used uninitialized in this function [-Wmaybe-uninitialized] 462 | MemFree(LB+bi); | ~~^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tfuns.c tfuns.c: In function ‘find_orf’: tfuns.c:866:26: warning: unused variable ‘into’ [-Wunused-variable] 866 | IntFuzzPtr infrom=NULL, into=NULL; | ^~~~ tfuns.c:866:13: warning: unused variable ‘infrom’ [-Wunused-variable] 866 | IntFuzzPtr infrom=NULL, into=NULL; | ^~~~~~ At top level: tfuns.c:977:13: warning: ‘find_orf_from_circle’ defined but not used [-Wunused-function] 977 | static void find_orf_from_circle (SeqPortPtr spp, Boolean flagIsCircle, | ^~~~~~~~~~~~~~~~~~~~ tfuns.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: tfuns.c,v 6.17 2015/08/17 17:15:09 bollin Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF toasn3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from toasn3.c:10: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ toasn3.c: In function ‘FindOrg’: toasn3.c:1444:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 1444 | Int4 len; | ^~~ toasn3.c: In function ‘CheckQualsWithComm’: toasn3.c:1731:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable] 1731 | OrgRefPtr orp; | ^~~ toasn3.c: In function ‘CheckQuals’: toasn3.c:1768:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable] 1768 | OrgRefPtr orp; | ^~~ toasn3.c: In function ‘CountSourceFeat’: toasn3.c:2570:13: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2570 | Pointer pnt; | ^~~ toasn3.c:2561:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 2561 | ValNodePtr vnp; | ^~~ toasn3.c: In function ‘TASNTrimInternalSemicolons’: toasn3.c:4155:12: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 4155 | CharPtr tmp; | ^~~ toasn3.c: In function ‘ImpFeatToProtRef’: toasn3.c:4861:13: warning: variable ‘lfree’ set but not used [-Wunused-but-set-variable] 4861 | Boolean lfree = FALSE, partial5, partial3; | ^~~~~ toasn3.c: In function ‘RemovePeptideImpFeats’: toasn3.c:5160:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable] 5160 | ImpFeatPtr ifp; | ^~~ At top level: toasn3.c:1711:16: warning: ‘GetQualValue’ defined but not used [-Wunused-function] 1711 | static CharPtr GetQualValue(GBQualPtr gbqual, CharPtr qual) | ^~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from toasn3.c:19: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ toasn3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: toasn3.c,v 6.150 2016/11/02 23:36:09 kans Exp $"; | ^~~~~ toasn3.c: In function ‘CdEndCheck’: toasn3.c:4666:16: warning: ‘m_oldto’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4666 | msip->to = m_oldto; | ~~~~~~~~~^~~~~~~~~ toasn3.c:4665:18: warning: ‘m_oldfrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4665 | msip->from = m_oldfrom; | ~~~~~~~~~~~^~~~~~~~~~~ toasn3.c:4663:13: warning: ‘oldto’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4663 | sip->to = oldto; | ~~~~~~~~^~~~~~~ toasn3.c:4662:15: warning: ‘oldfrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4662 | sip->from = oldfrom; | ~~~~~~~~~~^~~~~~~~~ toasn3.c: In function ‘FixNucProtSet’: toasn3.c:2205:21: warning: ‘bseg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2205 | bseg->annot = sap; | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF toporg.c toporg.c: In function ‘ChkSegset’: toporg.c:64:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable] 64 | Boolean is_org = FALSE, is_modif = FALSE, is_title = FALSE; | ^~~~~~~~ toporg.c:63:17: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable] 63 | OrgRefPtr orp; | ^~~ toporg.c:60:17: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 60 | Pointer pnt; | ^~~ toporg.c:55:17: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 55 | ValNodePtr vnp = NULL, set_vnp = NULL, upd_date_vnp = NULL; | ^~~ toporg.c: In function ‘ChkNucProt’: toporg.c:608:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable] 608 | Boolean is_org = FALSE, is_modif = FALSE, is_title = FALSE; | ^~~~~~~~ toporg.c: In function ‘StripBSfromParts’: toporg.c:1330:17: warning: variable ‘empty’ set but not used [-Wunused-but-set-variable] 1330 | Boolean empty; | ^~~~~ toporg.c:1329:17: warning: variable ‘bsmp’ set but not used [-Wunused-but-set-variable] 1329 | BSMapPtr bsmp; | ^~~~ toporg.c:1328:29: warning: variable ‘set_vnp’ set but not used [-Wunused-but-set-variable] 1328 | ValNodePtr descr, vnp, set_vnp; | ^~~~~~~ toporg.c: In function ‘MapsToGenref’: toporg.c:2021:17: warning: variable ‘loc’ set but not used [-Wunused-but-set-variable] 2021 | SeqLocPtr loc; | ^~~ toporg.c:2016:17: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable] 2016 | ValNodePtr descr = NULL, head, last, vnp; | ^~~~~ toporg.c: In function ‘FindOldLineage’: toporg.c:2606:17: warning: variable ‘lineage’ set but not used [-Wunused-but-set-variable] 2606 | CharPtr lineage; | ^~~~~~~ toporg.c: In function ‘ArePubsMergeableForFig’: toporg.c:4796:36: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses] 4796 | || !cgp_fig->serial_number != cgp_nofig->serial_number) { | ^~ toporg.c:4796:12: note: add parentheses around left hand side expression to silence this warning 4796 | || !cgp_fig->serial_number != cgp_nofig->serial_number) { | ^~~~~~~~~~~~~~~~~~~~~~~ | ( ) toporg.c: In function ‘StripBadTitleFromProteinProducts’: toporg.c:5311:22: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable] 5311 | Uint1 tech; | ^~~~ toporg.c: In function ‘FindPubWithFig’: toporg.c:5647:10: warning: variable ‘a’ set but not used [-Wunused-but-set-variable] 5647 | Int4 a = 0; | ^ toporg.c: In function ‘AddMissingGeneXref’: toporg.c:5955:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 5955 | Int2 count; | ^~~~~ toporg.c: In function ‘ConvertSegSetToDeltaSeqInt’: toporg.c:7093:18: warning: unused variable ‘str’ [-Wunused-variable] 7093 | CharPtr str, ttl = NULL; | ^~~ toporg.c:7086:18: warning: unused variable ‘ovp’ [-Wunused-variable] 7086 | ObjValNodePtr ovp; | ^~~ At top level: toporg.c:5475:13: warning: ‘SynchronizePseudogenesProc’ defined but not used [-Wunused-function] 5475 | static void SynchronizePseudogenesProc ( | ^~~~~~~~~~~~~~~~~~~~~~~~~~ toporg.c:3119:13: warning: ‘BarCodeTechToKeyword’ defined but not used [-Wunused-function] 3119 | static void BarCodeTechToKeyword (BioseqPtr bsp, Pointer userdata) | ^~~~~~~~~~~~~~~~~~~~ toporg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: toporg.c,v 6.251 2016/11/02 23:36:10 kans Exp $"; | ^~~~~ toporg.c: In function ‘MergeEquivCitSubs’: toporg.c:3905:7: warning: ‘csp1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3905 | if (DateMatch (csp1->date, csp2->date, FALSE) != 0) return FALSE; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ toporg.c:3925:18: note: ‘csp1’ was declared here 3925 | CitSubPtr csp1, csp2; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pobutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/pobutil.h:7, from pobutil.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pobutil.c: In function ‘build_repeat_feat’: pobutil.c:187:7: warning: unused variable ‘c’ [-Wunused-variable] 187 | Char c='%'; | ^ pobutil.c: In function ‘merge_StdSeg’: pobutil.c:1033:7: warning: variable ‘start_1’ set but not used [-Wunused-but-set-variable] 1033 | Int4 start_1, stop_1, start_2, stop_2; | ^~~~~~~ pobutil.c:1031:7: warning: unused variable ‘overlap’ [-Wunused-variable] 1031 | Int4 overlap = -1; | ^~~~~~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/pobutil.h:7, from pobutil.c:3: pobutil.c: In function ‘FindHumanRepeats’: ../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] 191 | #define Nlm_MemSet memset | ^~~~~~ ../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’ 210 | #define MemSet Nlm_MemSet | ^~~~~~~~~~ pobutil.c:2380:2: note: in expansion of macro ‘MemSet’ 2380 | MemSet((Pointer) (&tmp), sizeof(ValNode), 0); | ^~~~~~ ../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] 191 | #define Nlm_MemSet memset | ^~~~~~ ../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’ 210 | #define MemSet Nlm_MemSet | ^~~~~~~~~~ pobutil.c:2381:2: note: in expansion of macro ‘MemSet’ 2381 | MemSet((Pointer) (&si), sizeof(SeqInt), 0); | ^~~~~~ pobutil.c: In function ‘AluFeat’: pobutil.c:2431:10: warning: variable ‘my_userdata’ set but not used [-Wunused-but-set-variable] 2431 | Pointer my_userdata; | ^~~~~~~~~~~ At top level: pobutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: pobutil.c,v 6.10 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF stsutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from stsutil.c:88: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ stsutil.c: In function ‘InitSTSSearch_r’: stsutil.c:270:10: warning: unused variable ‘StsCount’ [-Wunused-variable] 270 | Int4 StsCount=0; | ^~~~~~~~ stsutil.c: In function ‘GetSTSEntry’: stsutil.c:635:13: warning: variable ‘p’ set but not used [-Wunused-but-set-variable] 635 | CharPtr p; | ^ stsutil.c: In function ‘STSCalculateHash’: stsutil.c:753:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] 753 | if ((j = HashCode[*p++]) < 0) | ^~~~ stsutil.c: In function ‘STSReverse’: stsutil.c:771:29: warning: array subscript has type ‘char’ [-Wchar-subscripts] 771 | if ((*t = ComplCode[*s]) == 0) | ^~ stsutil.c: In function ‘InitHashTable’: stsutil.c:910:21: warning: variable ‘sts_uid’ set but not used [-Wunused-but-set-variable] 910 | CharPtr gb_uid, sts_uid; | ^~~~~~~ stsutil.c:910:13: warning: variable ‘gb_uid’ set but not used [-Wunused-but-set-variable] 910 | CharPtr gb_uid, sts_uid; | ^~~~~~ stsutil.c:908:23: warning: variable ‘gi’ set but not used [-Wunused-but-set-variable] 908 | Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0; | ^~ stsutil.c:908:10: warning: variable ‘id_sts’ set but not used [-Wunused-but-set-variable] 908 | Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0; | ^~~~~~ stsutil.c:907:23: warning: unused variable ‘error’ [-Wunused-variable] 907 | Int4 LineLength, error= FALSE; | ^~~~~ At top level: stsutil.c:892:13: warning: ‘STSHashInitFree’ defined but not used [-Wunused-function] 892 | static void STSHashInitFree(STSHashInitPtr sts) | ^~~~~~~~~~~~~~~ stsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: stsutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ stsutil.c: In function ‘GetSTSEntry’: stsutil.c:654:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 654 | TmpVal[j][k-1] = NULLB; stsutil.c:633:10: note: at offset 0 to object ‘TmpVal’ with size 1152 declared here 633 | Char TmpVal[MAXDBPAR][128]; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggadj.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from suggadj.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ suggadj.c: In function ‘score_possible_splice_sites’: suggadj.c:874:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 874 | score = ( vx[seq_or_rev[putative_donor]]==3) ?10:0; | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c:875:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 875 | score += (vx[seq_or_rev[putative_acceptor]]==3 )?10:0; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ suggadj.c:878:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 878 | score += ( vx[seq_or_rev[putative_donor+1]]==0 )?3:0; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ suggadj.c:879:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 879 | score += ( vx[seq_or_rev[putative_acceptor-1]]==2 )?3:0; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ suggadj.c: In function ‘check_split_codon’: suggadj.c:985:40: warning: array subscript has type ‘char’ [-Wchar-subscripts] 985 | val_assuming_1_from_left= vx[seq_or_rev[left_ends+1]] * 16 + | ~~~~~~~~~~^~~~~~~~~~~~~ suggadj.c:986:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 986 | vx[seq_or_rev[right_starts-2]]*4+ | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c:987:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 987 | vx[seq_or_rev[right_starts-1]]; | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c:998:40: warning: array subscript has type ‘char’ [-Wchar-subscripts] 998 | val_assuming_2_from_left= vx[seq_or_rev[left_ends+1]] * 16 + | ~~~~~~~~~~^~~~~~~~~~~~~ suggadj.c:999:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 999 | vx[seq_or_rev[left_ends+2]] * 4 + | ~~~~~~~~~~^~~~~~~~~~~~~ suggadj.c:1000:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1000 | vx[seq_or_rev[right_starts-1]]; | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c: In function ‘overlapping_fixer’: suggadj.c:1370:29: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1370 | test_val = vx[seq_or_rev[left_exon_ends]]*16 + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c:1371:19: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1371 | vx[seq_or_rev[right_exon_starts-1]]; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ suggadj.c:1373:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1373 | test_val += vx[seq_or_rev[right_exon_starts-2]]*4; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ suggadj.c:1375:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1375 | test_val += vx[seq_or_rev[left_exon_ends+1]]*4; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ At top level: suggadj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: suggadj.c,v 6.3 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggest.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from suggest.c:199: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ suggest.c: In function ‘get_frames’: suggest.c:458:14: warning: array subscript has type ‘char’ [-Wchar-subscripts] 458 | val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]]; | ~^~~ suggest.c:458:28: warning: array subscript has type ‘char’ [-Wchar-subscripts] 458 | val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]]; | ~^~~ At top level: suggest.c:1331:13: warning: ‘ReportSuggestIntervalsError’ defined but not used [-Wunused-function] 1331 | static void ReportSuggestIntervalsError (SeqRecPtr srp, CharPtr gen_txt) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ suggest.c:1222:1: warning: ‘fprintf_m_stk_entry’ defined but not used [-Wunused-function] 1222 | fprintf_m_stk_entry(FILE *fp, Int4 index, char *msg) | ^~~~~~~~~~~~~~~~~~~ suggest.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: suggest.c,v 6.14 2009/04/10 17:22:14 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggslp.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from suggslp.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ suggslp.c: In function ‘MakeReverseSequence’: suggslp.c:190:12: warning: array subscript has type ‘char’ [-Wchar-subscripts] 190 | *t++ = r[*--s]; | ^~~~ At top level: suggslp.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: suggslp.c,v 6.6 2009/04/16 18:35:41 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blast.c:2572: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast.c: In function ‘BlastReevaluateWithAmbiguities’: blast.c:2954:24: warning: variable ‘query_end’ set but not used [-Wunused-but-set-variable] 2954 | Uint1Ptr query_start, query_end, subject_real_start=NULL; | ^~~~~~~~~ blast.c:2949:16: warning: variable ‘hspcnt’ set but not used [-Wunused-but-set-variable] 2949 | Int4 context, hspcnt, hspcnt_max, index, index1, status; | ^~~~~~ blast.c: In function ‘BlastGetVirtualOIDList’: blast.c:3179:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3179 | if (virtual_oidlist = rdfp_chain->oidlist) { | ^~~~~~~~~~~~~~~ blast.c: In function ‘BlastGetDbChunk’: blast.c:3210:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3210 | if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) { | ^~~~~~~~~~~~~~~ blast.c: In function ‘BlastCreateQueryDNAP’: blast.c:4100:11: warning: variable ‘strand_option’ set but not used [-Wunused-but-set-variable] 4100 | Uint1 strand_option; | ^~~~~~~~~~~~~ blast.c: In function ‘BlastReapPartialHitlistByEvalue’: blast.c:6486:10: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 6486 | else | ^~~~ blast.c:6490:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 6490 | if( !search->mult_queries ) | ^~ blast.c: In function ‘BlastWordFinder_contig’: blast.c:7094:16: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable] 7094 | register Int4 bits_to_shift, min_diag_length, min_diag_mask; | ^~~~~~~~~~~~~ blast.c: In function ‘BlastWordExtend’: blast.c:7835:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable] 7835 | BLAST_Score leftsum, rightsum, rightscore, leftscore; | ^~~~~~~~~ blast.c: In function ‘BlastNewWordExtend’: blast.c:7982:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable] 7982 | BLAST_Score leftsum, rightsum, rightscore, leftscore; | ^~~~~~~~~ blast.c: In function ‘BlastNtWordFinder_mh’: blast.c:8843:23: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable] 8843 | register Int4 bits_to_shift, min_diag_length, min_diag_mask; | ^~~~~~~~~~~~~ blast.c:8842:103: warning: variable ‘compression_factor’ set but not used [-Wunused-but-set-variable] 8842 | Int4 s_pos, q_off, s_off, offset, virtual_wordsize, wordsize, compressed_wordsize, compression_factor; | ^~~~~~~~~~~~~~~~~~ blast.c: In function ‘BlastNtWordFinder’: blast.c:9076:14: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable] 9076 | Int4 bits_to_shift, min_diag_length, min_diag_mask; | ^~~~~~~~~~~~~ blast.c: In function ‘BlastSaveCurrentHitlist’: blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 10115 | if( hitlist_max > 1 ) | ^ blast.c:9785:7: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable] 9785 | Int4 query_length; | ^~~~~~~~~~~~ blast.c: In function ‘SumHSPEvalue’: blast.c:10588:9: warning: variable ‘gap_size’ set but not used [-Wunused-but-set-variable] 10588 | Int4 gap_size, num, subject_length; | ^~~~~~~~ blast.c: In function ‘link_hsps’: blast.c:11267:10: warning: variable ‘frame_change’ set but not used [-Wunused-but-set-variable] 11267 | Boolean frame_change, linked_set, ignore_small_gaps; | ^~~~~~~~~~~~ At top level: blast.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: blast.c,v 6.451 2008/01/25 21:15:22 bealer Exp $"; | ^~~~~ blast.c: In function ‘blastMergeFilterLocs’: blast.c:3985:16: warning: ‘dup_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3985 | dup_slp = (SeqLocPtr) dup_slp->data.ptrvalue; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast.c: In function ‘BlastLinkHsps’: blast.c:10455:41: warning: ‘orig_hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10455 | search->current_hitlist = orig_hitlist; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastutl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blastutl.c:1836: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blastutl.c: In function ‘BlastSeqLocFilterEx’: blastutl.c:7554:11: warning: statement with no effect [-Wunused-value] 7554 | stop_timer("after repeat filtering"); | ^ blastutl.c: In function ‘BlastPreliminaryGappedScore’: blastutl.c:9853:30: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable] 9853 | Int4 index, max_offset = 0, query_length, min_score; | ^~~~~~~~~~~~ blastutl.c: In function ‘BlastGetGappedScore’: blastutl.c:10282:11: warning: statement with no effect [-Wunused-value] 10282 | stop_timer("after BlastGappedScoreInternal"); | ^ At top level: blastutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blastutl.c,v 6.472 2010/12/10 18:47:12 madden Exp $"; | ^~~~~ blastutl.c: In function ‘BlastNtFindWords’: blastutl.c:11445:10: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11445 | end = MIN(end, len-initial_wordsize); blastutl.c: In function ‘BlastFindWords’: blastutl.c:11623:8: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11623 | stop = MIN(stop, len); blastutl.c:11711:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11711 | start_score2 += matrix[(Int4) *(str+index2)][*(words+index2)]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:11704:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11704 | start_score = second_score+first_score; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:11695:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11695 | diff2 += diff; | ~~~~~~^~~~~~~ blastutl.c: In function ‘BlastNewFindWords_Old’: blastutl.c:11931:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11931 | start_score2 += MtrxScorePosSearch(search->sbp, blastutl.c:11924:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11924 | start_score = second_score+first_score; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:11915:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11915 | diff2 += diff; | ~~~~~~^~~~~~~ blastutl.c: In function ‘BlastNewFindWordsEx’: blastutl.c:12124:30: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12124 | start_score2 += posMatrix[offset+index2][*(words+index2)]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:12118:29: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12118 | start_score = second_score + first_score; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:12110:23: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12110 | diff2 += diff; | ~~~~~~^~~~~~~ blastutl.c: In function ‘RealBlastGetGappedAlignmentTraceback’: blastutl.c:9008:42: warning: ‘seqalign_array’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9008 | SeqAlignPtr seqalign, seqalign_var, *seqalign_array; | ^~~~~~~~~~~~~~ blastutl.c: In function ‘SumBlastGetGappedAlignmentEx’: blastutl.c:9670:33: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9670 | HeapSort(hsp_array+start,(stop-start),sizeof(BLAST_HSPPtr), score_compare_hsps); | ~~~~~^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastool.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blastool.c:946: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blastool.c: In function ‘BlastScaleMatrix’: blastool.c:3032:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 3032 | else | ^~~~ blastool.c:3035:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 3035 | if (new_lambda > lambda) | ^~ blastool.c: In function ‘OOFBlastHSPGetNumIdentical’: blastool.c:6081:9: warning: variable ‘context’ set but not used [-Wunused-but-set-variable] 6081 | Int2 context; | ^~~~~~~ At top level: blastool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blastool.c,v 6.292 2007/03/15 20:39:17 madden Exp $"; | ^~~~~ blastool.c: In function ‘BlastCreateVirtualOIDList’: blastool.c:2556:24: warning: ‘gilist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2556 | BlastDoubleInt4Ptr gilist, real_gilist = NULL, *real_gilist_ptrs = NULL; | ^~~~~~ blastool.c: In function ‘BlastInsertList2Heap’: blastool.c:3595:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3595 | context = hsp->query_offset / query_length; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ blastool.c: In function ‘BlastFreeHeap’: blastool.c:3687:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3687 | context = hsp->query_offset / query_length; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ blastool.c: In function ‘BLASTFilterOverlapRegions’: blastool.c:4531:24: warning: ‘next_tail’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4531 | tail->next = seqalign; | ~~~~~~~~~~~^~~~~~~~~~ blastool.c: In function ‘BlastPrintAlignInfo’: blastool.c:4800:23: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4800 | sap->next = SeqAlignNew(); | ~~~~~~~~~~^~~~~~~~~~~~~~~ blastool.c: In function ‘MegaBlastPrintAlignInfo’: blastool.c:963:17: warning: ‘subject_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 963 | #define fprintf blastool_fprintf | ^~~~~~~~~~~~~~~~ blastool.c:5046:30: note: ‘subject_seq_buffer’ was declared here 5046 | CharPtr query_seq_buffer, subject_seq_buffer; | ^~~~~~~~~~~~~~~~~~ blastool.c:963:17: warning: ‘query_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 963 | #define fprintf blastool_fprintf | ^~~~~~~~~~~~~~~~ blastool.c:5046:12: note: ‘query_seq_buffer’ was declared here 5046 | CharPtr query_seq_buffer, subject_seq_buffer; | ^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastconcat.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blastconcat.c:89: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blastconcat.c: In function ‘BlastMakeFakeBspConcat’: blastconcat.c:648:12: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable] 648 | SeqLocPtr slp = NULL; | ^~~ At top level: blastconcat.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blastconcat.c,v 1.14 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF splutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from splutil.c:52: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ splutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: splutil.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gapxdrop.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/gapxdrop.h:150, from gapxdrop.c:368: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gapxdrop.c: In function ‘ALIGN_EX’: gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 864 | if (s == 1) | ^ gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 867 | if (s == 2) | ^ At top level: gapxdrop.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: gapxdrop.c,v 6.76 2003/11/07 21:52:52 dondosha Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg0.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg0.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg0.c: In function ‘g_band0_align’: bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 273 | if(leftd >= 1) | ^ At top level: bandalg0.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg0.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg1.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg1.c: In function ‘gband_quadratic’: bandalg1.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 54 | Int4 c, i, j; | ^ bandalg1.c: In function ‘g_band1_align’: bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 205 | if(leftd >= 1) | ^ At top level: bandalg1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg1.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg2.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg2.c: In function ‘gb_linear_align’: bandalg2.c:208:24: warning: variable ‘misma’ set but not used [-Wunused-but-set-variable] 208 | register Int4 match, misma; | ^~~~~ bandalg2.c:208:17: warning: variable ‘match’ set but not used [-Wunused-but-set-variable] 208 | register Int4 match, misma; | ^~~~~ bandalg2.c:207:18: warning: variable ‘AA’ set but not used [-Wunused-but-set-variable] 207 | register Uint1 AA; | ^~ At top level: bandalg2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg2.c,v 6.5 2003/05/30 17:25:35 coulouri Exp $"; | ^~~~~ bandalg2.c: In function ‘gb_linear_align’: bandalg2.c:577:12: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 577 | _INS(N - Y); | ^ In file included from bandalg2.c:36: ../include/bandalgn.h:140:76: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 140 | data->last = (data->last < 0) ? (data->sapp[-1] -= (k)) : (*data->sapp++ = -(k)); | ^ bandalg2.c:202:35: note: ‘X’ was declared here 202 | Int4 rmid, k =0, l=0, r, v, kt, X, Y; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg3.c:37: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg3.c: In function ‘gband_linear_qgap’: bandalg3.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 54 | Int4 c, i, j; | ^ At top level: bandalg3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg3.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ bandalg3.c: In function ‘gband_linear_qgap’: bandalg3.c:314:41: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 314 | else if(Y != rightd) _INS(rightd-Y) | ^ bandalg3.c:185:28: note: ‘Y’ was declared here 185 | Int4 ib, best=MININT, X, Y; | ^ bandalg3.c:313:21: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 313 | if(X != M) _DEL(M - X) | ^ bandalg3.c:185:25: note: ‘X’ was declared here 185 | Int4 ib, best=MININT, X, Y; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg4.c:37: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg4.c: In function ‘g_band4_align_small’: bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 826 | if (e == 1) | ^ bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 829 | if (e == 2) | ^ bandalg4.c:630:8: warning: variable ‘band’ set but not used [-Wunused-but-set-variable] 630 | Int4 band, j; | ^~~~ At top level: bandalg4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg4.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ bandalg4.c: In function ‘g_band4_align’: bandalg4.c:534:22: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 534 | if(X != M || Y != N) regA = regB = 1; | ~~^~~~ bandalg4.c:534:12: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 534 | if(X != M || Y != N) regA = regB = 1; | ~~^~~~ bandalg4.c:562:7: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] 562 | g_band4_align(A, B, r - 1, r + rmid, rmid + 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 | MIN(up, r + rmid), tb, 1, legA, legB, 1, 1, data); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bandalg4.c:857:37: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 857 | else if (Y != rightd) _INS(rightd - Y); | ^ bandalg4.c:640:28: note: ‘Y’ was declared here 640 | Int4 ib, best=MININT, X, Y; | ^ In file included from bandalg4.c:37: ../include/bandalgn.h:140:76: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 140 | data->last = (data->last < 0) ? (data->sapp[-1] -= (k)) : (*data->sapp++ = -(k)); | ^ bandalg4.c:640:25: note: ‘X’ was declared here 640 | Int4 ib, best=MININT, X, Y; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg5.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg5.c: In function ‘gband_q3gap’: bandalg5.c:56:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 56 | Int4 c, i, j; | ^ bandalg5.c: In function ‘g_band5_align’: bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 292 | if (e == 1) | ^ bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 295 | if (e == 2) | ^ At top level: bandalg5.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg5.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ bandalg5.c: In function ‘gband_q3gap’: bandalg5.c:320:32: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 320 | if (Y != rightd) _INS(rightd - Y); | ^ bandalg5.c:146:28: note: ‘Y’ was declared here 146 | Int4 ib, best=MININT, X, Y; | ^ bandalg5.c:319:22: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 319 | if (X != M) _DEL(M - X); | ^ bandalg5.c:146:25: note: ‘X’ was declared here 146 | Int4 ib, best=MININT, X, Y; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalgn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from bandalgn.c:118: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalgn.c: In function ‘ExtendSeqAlign’: bandalgn.c:1113:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable] 1113 | DenseDiagPtr ddp; | ^~~ bandalgn.c: In function ‘CC_ExtendSeqAlign’: bandalgn.c:1188:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable] 1188 | DenseDiagPtr ddp; | ^~~ At top level: bandalgn.c:699:14: warning: ‘HSblastna_to_ncbi4na’ defined but not used [-Wunused-variable] 699 | static Uint1 HSblastna_to_ncbi4na[] = { 1, /* A, 0 */ | ^~~~~~~~~~~~~~~~~~~~ bandalgn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalgn.c,v 6.17 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ bandalgn.c: In function ‘LocalBandToEditBlock’: bandalgn.c:463:20: warning: ‘edit_block’ may be used uninitialized in this function [-Wmaybe-uninitialized] 463 | lbsp->edit_block = edit_block; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bandalgn.c: In function ‘SetLowUpFromBlast’: bandalgn.c:1053:7: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1053 | if (maxsc < val) { | ^ bandalgn.c:1060:7: warning: ‘alnlen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1060 | if (maxlen < alnlen) { | ^ bandalgn.c:1070:9: warning: ‘maxdi_up’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1070 | maxy = MAX(maxy,maxdi_up); bandalgn.c:1069:9: warning: ‘mindi_low’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1069 | miny = MIN(miny,mindi_low); bandalgn.c:1055:10: warning: ‘maxdi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1055 | maxy = maxdi + width; | ~~~~~^~~~~~~~~~~~~~~ bandalgn.c:1056:10: warning: ‘mindi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1056 | miny = mindi - width; | ~~~~~^~~~~~~~~~~~~~~ bandalgn.c: In function ‘GetAlignExtremes’: bandalgn.c:1309:7: warning: ‘y2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1309 | *yy2 = y2; | ~~~~~^~~~ bandalgn.c:1308:7: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1308 | *yy1 = y1; | ~~~~~^~~~ bandalgn.c:1307:7: warning: ‘x2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1307 | *xx2 = x2; | ~~~~~^~~~ bandalgn.c:1306:7: warning: ‘x1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1306 | *xx1 = x1; | ~~~~~^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastkar.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blastkar.c:648: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blastkar.c:2373:25: warning: ‘Altschul_prob’ defined but not used [-Wunused-variable] 2373 | static BLAST_LetterProb Altschul_prob[] = { | ^~~~~~~~~~~~~ blastkar.c:2347:25: warning: ‘Dayhoff_prob’ defined but not used [-Wunused-variable] 2347 | static BLAST_LetterProb Dayhoff_prob[] = { | ^~~~~~~~~~~~ blastkar.c:1121:13: warning: ‘blosum62_20_prefs’ defined but not used [-Wunused-variable] 1121 | static Int4 blosum62_20_prefs[BLOSUM62_20_VALUES_MAX] = { | ^~~~~~~~~~~~~~~~~ blastkar.c:1053:21: warning: ‘blosum62_20_values’ defined but not used [-Wunused-variable] 1053 | static Nlm_FloatHi blosum62_20_values[BLOSUM62_20_VALUES_MAX][8] = { | ^~~~~~~~~~~~~~~~~~ blastkar.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blastkar.c,v 6.115 2006/12/14 17:08:19 madden Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF actutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/actutils.h:103, from actutils.c:232: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ actutils.c: In function ‘SlideToHit’: actutils.c:346:23: warning: variable ‘done’ set but not used [-Wunused-but-set-variable] 346 | Boolean inIsland, done; | ^~~~ actutils.c:346:13: warning: variable ‘inIsland’ set but not used [-Wunused-but-set-variable] 346 | Boolean inIsland, done; | ^~~~~~~~ actutils.c: In function ‘ResolveSpinConflict’: actutils.c:1484:35: warning: unused variable ‘row2_conflict’ [-Wunused-variable] 1484 | Boolean row1_conflict = FALSE, row2_conflict = FALSE; | ^~~~~~~~~~~~~ actutils.c:1484:12: warning: unused variable ‘row1_conflict’ [-Wunused-variable] 1484 | Boolean row1_conflict = FALSE, row2_conflict = FALSE; | ^~~~~~~~~~~~~ actutils.c: In function ‘ACT_FindBestAlnByDotPlot’: actutils.c:2002:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 2002 | Uint1 strand; | ^~~~~~ actutils.c:2001:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable] 2001 | Int4 start2; | ^~~~~~ actutils.c:2000:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable] 2000 | Int4 start1; | ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from actutils.c:232: actutils.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ actutils.c:3132:13: warning: ‘DumpAlignments’ defined but not used [-Wunused-function] 3132 | static void DumpAlignments (SeqAlignPtr salp) | ^~~~~~~~~~~~~~ actutils.c:2927:13: warning: ‘MapBioseqToBioseqSpecial’ defined but not used [-Wunused-function] 2927 | static Int4 MapBioseqToBioseqSpecial(SeqAlignPtr sap, Int4 begin, Int4 fin, Int4 pos, Int4 which_end) | ^~~~~~~~~~~~~~~~~~~~~~~~ actutils.c:1654:16: warning: ‘SpinsConflict’ defined but not used [-Wunused-function] 1654 | static Boolean SpinsConflict (SQN_nPtr spin1, SQN_nPtr spin2, Int4 fuzz, Int4 strand) | ^~~~~~~~~~~~~ actutils.c:1392:13: warning: ‘am_fix_strand’ defined but not used [-Wunused-function] 1392 | static void am_fix_strand(SeqAlignPtr sap, Uint1 strand1, Uint1 strand2) | ^~~~~~~~~~~~~ actutils.c:1375:16: warning: ‘am_isa_gap’ defined but not used [-Wunused-function] 1375 | static Boolean am_isa_gap(Int4 start, Int4 prevstop, Uint1 strand) | ^~~~~~~~~~ actutils.c:749:13: warning: ‘StateTableSearch’ defined but not used [-Wunused-function] 749 | static void StateTableSearch (TextFsaPtr tbl, CharPtr txt, Int4Ptr state, Int4 pos, ACT_sitelistPtr PNTR asp_prev, ACT_sitelistPtr PNTR asp_head) | ^~~~~~~~~~~~~~~~ actutils.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: actutils.c,v 6.56 2008/10/22 17:19:22 bollin Exp $"; | ^~~~~ In file included from ../include/ncbi.h:59, from ../include/actutils.h:103, from actutils.c:232: actutils.c: In function ‘GetOldBlastAlignmentPiece’: ../include/ncbimem.h:232:23: warning: ‘program’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ actutils.c:3089:25: note: ‘program’ was declared here 3089 | CharPtr program; | ^~~~~~~ actutils.c: In function ‘ACT_FindPeakScores’: actutils.c:1342:31: warning: ‘ats_newprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1342 | ats_newprev->next = ats_new; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ actutils.c:1321:28: warning: ‘ats_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1321 | ats_prev->next = ats; | ~~~~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF posit.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from posit.c:402: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ posit.c: In function ‘posDemographics’: posit.c:1110:17: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable] 1110 | Int4 numseq, numSeqAligns; /*number of matching sequences and SeqAligns*/ | ^~~~~~~~~~~~ posit.c: In function ‘posFreqsToMatrix’: posit.c:1679:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4)) + (sizetype)((unsigned int)a * 4))’ may be undefined [-Wsequence-point] 1679 | posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN; posit.c: In function ‘posComputePseudoFreqs’: posit.c:1840:16: warning: variable ‘lambda’ set but not used [-Wunused-but-set-variable] 1840 | Nlm_FloatHi lambda; /*Karlin-Altschul parameter*/ | ^~~~~~ posit.c: In function ‘WposComputation’: posit.c:1988:13: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable] 1988 | Int4 i, numSeqAligns, numseq, qlength; | ^~~~~~~~~~~~ posit.c: In function ‘posPrintInformation’: posit.c:2319:8: warning: variable ‘querySize’ set but not used [-Wunused-but-set-variable] 2319 | Int4 querySize; | ^~~~~~~~~ posit.c: In function ‘posFindAlignmentDimensions’: posit.c:3064:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3064 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c:3070:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3070 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c:3079:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3079 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c:3086:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3086 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c: In function ‘posPreprocessAlignment’: posit.c:3137:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3137 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c:3152:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3152 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c: In function ‘posReadAlignment’: posit.c:3253:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3253 | fgets(nextline, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: posit.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: posit.c,v 6.88 2011/10/25 14:33:16 boratyng Exp $"; | ^~~~~ posit.c: In function ‘posFindAlignmentDimensions’: posit.c:3090:20: warning: ‘testCountSeqs’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3090 | testCountSeqs++; | ~~~~~~~~~~~~~^~ posit.c: In function ‘posComputeSequenceWeights’: posit.c:1447:36: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1447 | posSearch->posSigma[qplace] = intervalSigma; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ posit.c:1424:11: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1424 | if (Sigma > 0) { | ^ posit.c: In function ‘posReadCheckpoint’: posit.c:2873:28: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2873 | if (i < pssm->numColumns || j < pssm->numRows) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ posit.c:2702:11: note: ‘j’ was declared here 2702 | Int4 i, j, c; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from lookup.c:308: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ lookup.c: In function ‘lookup_get_memory’: lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 555 | Uint8 extra = ((Uint8)mem_struct->current) & ((Uint8) 63); | ^ In file included from ../include/blastdef.h:922, from ../include/blast.h:470, from lookup.c:309: lookup.c: In function ‘MegaBlastBuildLookupTable’: ../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT | ^ lookup.c:1047:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’ 1047 | GET_EXTRA_CODE_18_OPT(seq)) & no_bit0; | ^~~~~~~~~~~~~~~~~~~~~ ../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT | ^ lookup.c:1051:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’ 1051 | GET_EXTRA_CODE_18_OPT(seq)) & no_bit0; | ^~~~~~~~~~~~~~~~~~~~~ ../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT | ^ lookup.c:1078:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’ 1078 | GET_EXTRA_CODE_18_OPT(seq) | bit0; | ^~~~~~~~~~~~~~~~~~~~~ ../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT | ^ lookup.c:1082:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’ 1082 | GET_EXTRA_CODE_18_OPT(seq) | bit0; | ^~~~~~~~~~~~~~~~~~~~~ lookup.c:914:25: warning: variable ‘extra_code’ set but not used [-Wunused-but-set-variable] 914 | register Int4 ecode, extra_code; | ^~~~~~~~~~ At top level: lookup.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: lookup.c,v 6.59 2005/07/28 14:57:10 coulouri Exp $"; | ^~~~~ lookup.c: In function ‘MegaBlastBuildLookupTable’: lookup.c:975:10: warning: ‘word_weight’ may be used uninitialized in this function [-Wmaybe-uninitialized] 975 | if (word_weight >= 12) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF readdb.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ readdb.c: In function ‘readdb_parse_db_names’: readdb.c:2503:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2503 | if (**filenames == '"') | ^ readdb.c: In function ‘s_GetBlastDirInfo’: readdb.c:2734:32: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess] 2734 | memset(blast_dir, 0, sizeof(blast_dir)); | ^ readdb.c: In function ‘IndexFileExists’: readdb.c:3320:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3320 | if (rdfp->cih) | ^~ readdb.c:3326:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3326 | if (rdbap->first_oid > 0) { | ^~ readdb.c:3400:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3400 | if (rdfp->cih && rdfp->aliasfilebit == 0) | ^~ readdb.c:3406:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3406 | if (rdbap->first_oid > 0) { | ^~ readdb.c: In function ‘FindBlastDBFileEx’: readdb.c:3480:33: warning: unused variable ‘envp’ [-Wunused-variable] 3480 | CharPtr buffer, buffer1, envp = NULL; | ^~~~ readdb.c: In function ‘readdb_new_internalEx’: readdb.c:3558:25: warning: unused variable ‘envp’ [-Wunused-variable] 3558 | CharPtr charptr, envp = NULL; | ^~~~ readdb.c: In function ‘readdb_get_link’: readdb.c:4752:12: warning: variable ‘loaded_new’ set but not used [-Wunused-but-set-variable] 4752 | Boolean loaded_new = FALSE; | ^~~~~~~~~~ readdb.c:4751:24: warning: variable ‘last_used’ set but not used [-Wunused-but-set-variable] 4751 | ReadDBFILEPtr last, last_used, rdfp_var; | ^~~~~~~~~ readdb.c: In function ‘readdb_check_oid’: readdb.c:4896:38: warning: comparisons like ‘X<=Y<=Z’ do not have their mathematical meaning [-Wparentheses] 4896 | if (rdfp_var->start <= oid <= rdfp_var->stop) | ~~~~~~~~~~~~~~~~^~~~~~ readdb.c: In function ‘readdb_seqid2fasta’: readdb.c:5236:22: warning: unused variable ‘dummy_gi’ [-Wunused-variable] 5236 | Int4 dummy_gi = 0; /* Not used, should have been handled above. */ | ^~~~~~~~ readdb.c:5180:13: warning: unused variable ‘chptr’ [-Wunused-variable] 5180 | CharPtr chptr = NULL; | ^~~~~ readdb.c: In function ‘FDBuildOldStyleDefline’: readdb.c:6366:33: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess] 6366 | MemSet(defline, '\0', sizeof(defline)); | ^ readdb.c: In function ‘PrintDbInformationWithRID’: readdb.c:7571:14: warning: comparison between pointer and zero character constant [-Wpointer-compare] 7571 | if (rdfp == FALSE) | ^~ readdb.c:7571:9: note: did you mean to dereference the pointer? 7571 | if (rdfp == FALSE) | ^ readdb.c: In function ‘FDBLoadMembershipsTable’: readdb.c:8265:21: warning: variable ‘fn_name’ set but not used [-Wunused-but-set-variable] 8265 | const char* fn_name = NULL; | ^~~~~~~ readdb.c: In function ‘SeqIdE2Index’: readdb.c:8613:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 8613 | if ((tsip->version > 0) && (tsip->release == NULL)) | ^~ readdb.c:8615:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 8615 | break; | ^~~~~ readdb.c:8618:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 8618 | if (tsip->version > 0) | ^~ readdb.c:8620:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 8620 | break; | ^~~~~ readdb.c:8577:13: warning: unused variable ‘tmp’ [-Wunused-variable] 8577 | CharPtr tmp, ptr=NULL; | ^~~ readdb.c:8576:11: warning: unused variable ‘tmptype’ [-Wunused-variable] 8576 | Uint1 tmptype; | ^~~~~~~ readdb.c: In function ‘SeqIdSetE2Index’: readdb.c:8881:14: warning: variable ‘oldanp’ set but not used [-Wunused-but-set-variable] 8881 | SeqIdPtr oldanp; | ^~~~~~ readdb.c: In function ‘FindDBbyGI’: readdb.c:11397:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 11397 | if (gi > cih->maxgi) | ^~ readdb.c:11400:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 11400 | cigi = cih->ci + gi; | ^~~~ readdb.c: In function ‘Fastacmd_Search_ex’: readdb.c:12080:22: warning: variable ‘guess_gi’ set but not used [-Wunused-but-set-variable] 12080 | Int4 guess_gi = -1; | ^~~~~~~~ readdb.c: In function ‘DumpOneSequence’: readdb.c:12407:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 12407 | fprintf(fp, "%d\n", gi->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld readdb.c:12417:14: warning: unused variable ‘numeric_id’ [-Wunused-variable] 12417 | Boolean numeric_id = GetAccessionVersionFromSeqId(accn, &gi, &id, TRUE); | ^~~~~~~~~~ In file included from ../include/sqnutils.h:51, from readdb.c:2067: readdb.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ readdb.c:12829:1: warning: ‘readdb_preload_index’ defined but not used [-Wunused-function] 12829 | readdb_preload_index (ReadDBFILEPtr rdfp, Int4 first_db_seq, | ^~~~~~~~~~~~~~~~~~~~ In file included from readdb.c:2060: ../include/ncbisami.h:191:14: warning: ‘OneBit’ defined but not used [-Wunused-variable] 191 | static Uint1 OneBit[] = {0x80 , 0x40, 0x20, 0x10, 0x8, 0x4, 0x2, 0x1}; | ^~~~~~ ../include/ncbisami.h:183:14: warning: ‘PowersOfTwo’ defined but not used [-Wunused-variable] 183 | static Uint4 PowersOfTwo[] = {01,02,04,010,020,040,0100,0200,0400,01000, | ^~~~~~~~~~~ readdb.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: readdb.c,v 6.549 2016/09/02 15:04:59 ucko Exp $"; | ^~~~~ readdb.c: In function ‘readdb_read_alias_file’: readdb.c:3084:53: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3084 | sprintf(full_buffer, "%s%c%s", file_path, | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3090:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3090 | sprintf(full_buffer, "%s%c%s", file_path, | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:2994:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2994 | sprintf(full_buffer, "%s%c%s", file_path, | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c: In function ‘Int4ListReadFromFile’: readdb.c:2656:31: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2656 | sprintf(file_name, "%s%s%s", blast_dir, DIRDELIMSTR, FileNameFind(fname)); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c: In function ‘ReadDBOpenMHdrAndSeqFiles’: readdb.c:2277:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 2277 | sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:2296:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 2296 | sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:2252:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 2252 | sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:2252:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 2252 | sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:2259:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 2259 | sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c: In function ‘readdb_get_taxonomy_names’: readdb.c:5679:28: warning: ‘ufp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5679 | ufp_last->next = ufp; | ~~~~~~~~~~~~~~~^~~~~ readdb.c: In function ‘readdb_get_descriptor’: readdb.c:6668:44: warning: ‘new_defline_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6668 | new_defline_length += StringLen(defline) + StringLen(id_buf); | ^~ readdb.c: In function ‘readdb_new_internalEx’: readdb.c:3600:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3600 | sprintf(buffer1, "%s%s%s", buffer, DIRDELIMSTR, filename); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3671:25: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3671 | sprintf(buffer, "%s.%cin", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3811:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3811 | sprintf(buffer, "%s.%cnd", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3812:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3812 | sprintf(buffer1, "%s.%cni", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3825:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3825 | sprintf(buffer, "%s.%csd", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3826:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3826 | sprintf(buffer1, "%s.%csi", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3845:29: warning: ‘.ppd’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 3845 | sprintf(buffer, "%s.ppd", rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3846:29: warning: ‘.ppi’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 3846 | sprintf(buffer1, "%s.ppi", rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c: In function ‘GetAccList’: readdb.c:11821:29: warning: ‘AccListLast’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11821 | AccListLast->next = AccListTmp; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ readdb.c: In function ‘FD_ConstructMultivolumeDBList’: readdb.c:12690:31: warning: ‘%03ld’ directive writing between 3 and 10 bytes into a region of size 9 [-Wformat-overflow=] 12690 | sprintf(numstr, ".%03ld ", (long) i); | ^~~~~ readdb.c:12690:29: note: directive argument in the range [100, 2147483646] 12690 | sprintf(numstr, ".%03ld ", (long) i); | ^~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 13 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisam.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbisam.c:198: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbisam.c: In function ‘ISAMMakeStringIndex’: ncbisam.c:842:22: warning: unused variable ‘file_pos’ [-Wunused-variable] 842 | Int4 file_pos = ftell(data->db_fd); | ^~~~~~~~ ncbisam.c: In function ‘ISAMInitSearch’: ncbisam.c:1399:10: warning: variable ‘reserved2’ set but not used [-Wunused-but-set-variable] 1399 | Int4 reserved2; | ^~~~~~~~~ At top level: ncbisam.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: ncbisam.c,v 6.34 2007/11/06 19:20:06 coulouri Exp $"; | ^~~~~ ncbisam.c: In function ‘ISAMMakeIndex’: ncbisam.c:984:21: warning: ‘KeyDataInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 984 | NISAMKeyDataPtr KeyDataInfo, KeyDataSamples; | ^~~~~~~~~~~ ncbisam.c:983:14: warning: ‘KeyInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 983 | Uint4Ptr KeyInfo, KeySamples; | ^~~~~~~ In file included from ../include/ncbi.h:59, from ncbisam.c:198: ncbisam.c: In function ‘ISAMCreateDatabase’: ../include/ncbimem.h:232:23: warning: ‘prevterm’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ ncbisam.c:1181:13: note: ‘prevterm’ was declared here 1181 | CharPtr prevterm; | ^~~~~~~~ In file included from ../include/ncbimsg.h:78, from ../include/ncbi.h:60, from ncbisam.c:198: ../include/ncbierr.h:246:23: warning: ‘field_in’ may be used uninitialized in this function [-Wmaybe-uninitialized] 246 | #define ErrLogPrintf Nlm_ErrLogPrintf | ^~~~~~~~~~~~~~~~ ncbisam.c:1177:37: note: ‘field_in’ was declared here 1177 | unsigned long uid_in, uid_last, field_in; | ^~~~~~~~ In file included from ../include/ncbi.h:59, from ncbisam.c:198: ncbisam.c: In function ‘NISAMSearch’: ../include/ncbimem.h:232:23: warning: ‘KeyDataPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ ncbisam.c:1622:55: note: ‘KeyDataPageStart’ was declared here 1622 | NISAMKeyDataPtr KeyDataPage=NULL, KeyDataSamples, KeyDataPageStart; | ^~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:59, from ncbisam.c:198: ../include/ncbimem.h:232:23: warning: ‘KeyPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ ncbisam.c:1619:34: note: ‘KeyPageStart’ was declared here 1619 | Int4 NumElements, *KeyPage, *KeyPageStart; | ^~~~~~~~~~~~ ncbisam.c:1750:36: warning: ‘KeyPage’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1750 | Key = SwapUint4(KeyPage[current]); | ^ ncbisam.c:1593:24: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1593 | *Start = SampleNum * data->PageSize; | ~~~~~~~~~~^~~~~~~~~~~~~~~~ ncbisam.c:1618:27: note: ‘SampleNum’ was declared here 1618 | Int4 Start = 0, Stop, SampleNum; | ^~~~~~~~~ ncbisam.c: In function ‘SISAMSearch’: ncbisam.c:2373:8: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2373 | if ( (SampleNum < 0) || (SampleNum >= data->NumSamples)) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisort.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbisort.h:62, from ../include/ncbisrti.h:60, from ncbisort.c:86: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbisort.c: In function ‘SORTFracCompare’: ncbisort.c:699:12: warning: type defaults to ‘int’ in declaration of ‘tmpa’ [-Wimplicit-int] 699 | register tmpa = UCHAR(*a), tmpb = UCHAR(*b); | ^~~~ ncbisort.c:699:30: warning: type defaults to ‘int’ in declaration of ‘tmpb’ [-Wimplicit-int] 699 | register tmpa = UCHAR(*a), tmpb = UCHAR(*b); | ^~~~ In file included from ncbisort.c:86: ncbisort.c: At top level: ../include/ncbisrti.h:213:13: warning: ‘inthandler’ declared ‘static’ but never defined [-Wunused-function] 213 | static void inthandler(int i); | ^~~~~~~~~~ ncbisort.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: ncbisort.c,v 6.9 2012/08/22 23:02:39 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salign.h:10, from salign.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salign.c: In function ‘BandAlignTwoSeqLocsFunc’: salign.c:173:13: warning: variable ‘is_prot’ set but not used [-Wunused-but-set-variable] 173 | Boolean is_prot; | ^~~~~~~ salign.c: In function ‘SortBlastHits’: salign.c:391:15: warning: variable ‘totalvalmax’ set but not used [-Wunused-but-set-variable] 391 | totalvalmax = INT4_MAX, | ^~~~~~~~~~~ salign.c: In function ‘link_solution’: salign.c:1188:15: warning: unused variable ‘first’ [-Wunused-variable] 1188 | Boolean first = TRUE; | ^~~~~ At top level: salign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: salign.c,v 6.11 2009/01/21 17:09:18 bollin Exp $"; | ^~~~~ salign.c: In function ‘SortBlastHits’: salign.c:455:6: warning: ‘salpdup’ may be used uninitialized in this function [-Wmaybe-uninitialized] 455 | SeqAlignSetFree (salpdup); | ^~~~~~~~~~~~~~~~~~~~~~~~~ salign.c: In function ‘TranslateSeqLoc.constprop’: salign.c:660:10: warning: ‘slpp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 660 | return slpp; | ^~~~ salign.c: In function ‘BlastBandAlignTwoSeqLocs.constprop’: salign.c:1433:17: warning: ‘tail’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1433 | tail->next = salptmp; | ~~~~~~~~~~~^~~~~~~~~ salign.c:1408:15: note: ‘tail’ was declared here 1408 | tail, | ^~~~ salign.c:1348:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1348 | intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1); | ~~~~~^~~~~~~~ salign.c:1301:30: note: ‘stop’ was declared here 1301 | Int4 start, start1, stop; | ^~~~ salign.c:1348:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1348 | intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1); | ~~~~~^~~~~~~~ salign.c:1301:22: note: ‘start1’ was declared here 1301 | Int4 start, start1, stop; | ^~~~~~ salign.c:1270:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1270 | intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1); | ~~~~~^~~~~~~~ salign.c:1229:30: note: ‘stop’ was declared here 1229 | Int4 start, start1, stop; | ^~~~ salign.c:1270:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1270 | intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1); | ~~~~~^~~~~~~~ salign.c:1229:22: note: ‘start1’ was declared here 1229 | Int4 start, start1, stop; | ^~~~~~ salign.c: In function ‘SeqLocListToSeqAlign’: salign.c:1670:24: warning: ‘master_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1670 | salpblast = BlastTwoSeqLocs (master_slp, slp, is_prot, msp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salptool.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from salptool.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salptool.c: In function ‘MergeTwoDspBySIM4’: salptool.c:285:10: warning: variable ‘has_overlap’ set but not used [-Wunused-but-set-variable] 285 | Boolean has_overlap; | ^~~~~~~~~~~ salptool.c:281:7: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable] 281 | Int4 gap=0,gap_1, gap_2; | ^~~ salptool.c: In function ‘extend_dsp_ends’: salptool.c:1329:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1329 | else | ^~~~ salptool.c:1331:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1331 | if(extend_len > 0) | ^~ salptool.c:1346:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1346 | else | ^~~~ salptool.c:1348:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1348 | if(extend_len > 0) | ^~ salptool.c:1363:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1363 | else | ^~~~ salptool.c:1365:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1365 | if(extend_len > 0) | ^~ salptool.c:1380:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1380 | else | ^~~~ salptool.c:1382:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1382 | if(extend_len > 0) | ^~ In file included from ../include/sqnutils.h:51, from salptool.c:12: salptool.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from salptool.c:14: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salptool.c:1518:24: warning: ‘OrderBestHits’ defined but not used [-Wunused-function] 1518 | static int LIBCALLBACK OrderBestHits(Pointer ptr1, Pointer ptr2) | ^~~~~~~~~~~~~ salptool.c:1468:13: warning: ‘showtextalign_fromalign’ defined but not used [-Wunused-function] 1468 | static void showtextalign_fromalign (SeqAlignPtr salp, CharPtr path, FILE *fp) | ^~~~~~~~~~~~~~~~~~~~~~~ salptool.c:1453:13: warning: ‘getlengthforid’ defined but not used [-Wunused-function] 1453 | static Int4 getlengthforid (SeqIdPtr sip) | ^~~~~~~~~~~~~~ salptool.c:1267:16: warning: ‘need_recompute’ defined but not used [-Wunused-function] 1267 | static Boolean need_recompute(SeqAlignPtr align, Int4 m_len, Int4 s_len) | ^~~~~~~~~~~~~~ salptool.c:838:13: warning: ‘SeqLocTrimPolyATail’ defined but not used [-Wunused-function] 838 | static void SeqLocTrimPolyATail(SeqLocPtr loc_2, BioseqPtr bsp_2) { | ^~~~~~~~~~~~~~~~~~~ salptool.c:46:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function] 46 | static void SeqAnnotWrite(SeqAlignPtr align) | ^~~~~~~~~~~~~ salptool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: salptool.c,v 6.57 2008/07/07 18:52:31 bollin Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from urkutil.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkutil.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkpcc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkpcc.h:54, from urkpcc.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkpcc.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkpcc.c,v 6.13 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkptpf.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from urkptpf.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkptpf.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkptpf.c,v 6.33 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkepi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkepi.h:54, from urkepi.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkepi.c: In function ‘PredictEpiI0’: urkepi.c:214:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] 214 | epip->epiarray[*seq] += 1; | ^~~~ urkepi.c:239:59: warning: array subscript has type ‘char’ [-Wchar-subscripts] 239 | episcore = DownArrayScore (episcore, epip->epiarray[*seq]); | ^~~~ urkepi.c:240:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] 240 | epip->epiarray[*seq] += 1; | ^~~~ urkepi.c:241:57: warning: array subscript has type ‘char’ [-Wchar-subscripts] 241 | episcore = UpArrayScore (episcore, epip->epiarray[*seq]); | ^~~~ urkepi.c:263:59: warning: array subscript has type ‘char’ [-Wchar-subscripts] 263 | episcore = DownArrayScore (episcore, epip->epiarray[*(seq-window)]); | ^~~~~~~~~~~~~ urkepi.c:264:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] 264 | epip->epiarray[*(seq-window)] -= 1; | ^~~~~~~~~~~~~ urkepi.c:265:57: warning: array subscript has type ‘char’ [-Wchar-subscripts] 265 | episcore = UpArrayScore (episcore, epip->epiarray[*(seq-window)]); | ^~~~~~~~~~~~~ urkepi.c: In function ‘OptimizeEpiComp’: urkepi.c:605:18: warning: array subscript has type ‘char’ [-Wchar-subscripts] 605 | bin[seq[i]] += 1; | ~~~^~~ urkepi.c:621:18: warning: array subscript has type ‘char’ [-Wchar-subscripts] 621 | bin[seq[i]] += 1; | ~~~^~~ urkepi.c:651:19: warning: array subscript has type ‘char’ [-Wchar-subscripts] 651 | if (fbin[seq[i]] > expect) | ~~~^~~ urkepi.c:657:19: warning: array subscript has type ‘char’ [-Wchar-subscripts] 657 | if (fbin[seq[i]] > expect) | ~~~^~~ urkepi.c: In function ‘OptimizeEpiHP’: urkepi.c:782:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 782 | epip->epiarray[seq[j]] += 1; | ~~~^~~ urkepi.c:797:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 797 | epip->epiarray[seq[j]] += 1; | ~~~^~~ urkepi.c:837:29: warning: array subscript has type ‘char’ [-Wchar-subscripts] 837 | epip->epiarray[seq[n]] -= 1; | ~~~^~~ urkepi.c: In function ‘OptimizeEpiProbFunc’: urkepi.c:982:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 982 | epip->epiarray[seq[n]] += 1; | ~~~^~~ urkepi.c:994:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 994 | epip->epiarray[seq[n]] += 1; | ~~~^~~ At top level: urkepi.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkepi.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ urkepi.c: In function ‘FilterEpi’: urkepi.c:1053:21: warning: ‘right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1053 | cfap->right = right; | ~~~~~~~~~~~~^~~~~~~ urkepi.c:936:56: note: ‘right’ was declared here 936 | Int4 i, n, j, k, start, stop, loop, fact, left, right; | ^~~~~ urkepi.c:1052:20: warning: ‘left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1052 | cfap->left = left; | ~~~~~~~~~~~^~~~~~ urkepi.c:936:50: note: ‘left’ was declared here 936 | Int4 i, n, j, k, start, stop, loop, fact, left, right; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkfltr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkfltr.h:51, from urkfltr.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkfltr.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkfltr.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkdust.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkdust.h:51, from urkdust.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkdust.c: In function ‘DustMe_h’: urkdust.c:196:42: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 196 | (dcvp->curlevel <= newlevel) && dcvp->curend == loop+1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ urkdust.c: In function ‘DustForGraph’: urkdust.c:776:17: warning: variable ‘drphead’ set but not used [-Wunused-but-set-variable] 776 | DustRegionPtr drphead; | ^~~~~~~ At top level: urkdust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkdust.c,v 6.10 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urksigu.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urksigu.h:57, from urksigu.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urksigu.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urksigu.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seg.c seg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: seg.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ seg.c: In function ‘getprob’: seg.c:935:15: warning: ‘ans2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 935 | ans = ans1 + ans2 - totseq; | ~~~~~^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkbias.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from urkbias.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkbias.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkbias.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkcnsrt.h:60, from urkcnsrt.c:80: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkcnsrt.c:1203:13: warning: ‘ScanFrame’ defined but not used [-Wunused-function] 1203 | static void ScanFrame (BioseqPtr bsp, SeqLocPtr slp, Int4 frame, | ^~~~~~~~~ urkcnsrt.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkcnsrt.c,v 6.21 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ urkcnsrt.c: In function ‘Scan3Frames’: urkcnsrt.c:1385:5: warning: ‘length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1385 | for (i = n; i < length; i++) | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urktree.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urktree.h:51, from urktree.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urktree.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urktree.c,v 6.6 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pseed3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from pseed3.c:176: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pseed3.c: In function ‘SeedPruneHitsFromSeedReturn’: pseed3.c:230:17: warning: variable ‘curSegs’ set but not used [-Wunused-but-set-variable] 230 | DenseSegPtr curSegs, testSegs; /*Used to extract ids from curSeqAlign, testSeqAlign*/ | ^~~~~~~ pseed3.c: In function ‘seedEngineCore’: pseed3.c:507:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 507 | while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) { | ^~~~~~~ pseed3.c: In function ‘output_hits’: pseed3.c:1202:10: warning: variable ‘posBaseIndex’ set but not used [-Wunused-but-set-variable] 1202 | Int4 posBaseIndex; /*loop index for copying pos results arrays*/ | ^~~~~~~~~~~~ pseed3.c: In function ‘init_order’: pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1483 | seedSearch->order[seedSearch->pchars[i]] = i; | ^ pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1483 | seedSearch->order[seedSearch->pchars[i]] = i; | ~~~~~~~~~~~~~~~~~~^~~ pseed3.c:1487:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1487 | seedSearch->charMultiple[i] = 0; | ^ pseed3.c:1489:30: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1489 | if (seedSearch->standardProb[i] > seedepsilon) { | ^ pseed3.c:1490:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1490 | matrixRow = matrix[i]; | ^ pseed3.c:1493:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1493 | if (seedSearch->standardProb[j] > seedepsilon) | ^ pseed3.c:1494:42: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1494 | rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]); | ^ pseed3.c:1494:86: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1494 | rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]); | ^ pseed3.c:1496:28: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1496 | seedSearch->charMultiple[i] = rowSum; | ^ At top level: pseed3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: pseed3.c,v 6.54 2008/10/31 18:51:07 madden Exp $"; | ^~~~~ pseed3.c: In function ‘seedParallelFill’: pseed3.c:712:68: warning: iteration 100 invokes undefined behavior [-Waggressive-loop-optimizations] 712 | returnData->seedSearch->name_space[i] = seedSearch->name_space[i]; | ~~~~~~~~~~~~~~~~~~~~~~^~~ pseed3.c:711:4: note: within this loop 711 | for( i = 0; i <= BUF_SIZE; i++) | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pattern1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from pattern1.c:80: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pattern1.c: In function ‘init_pattern’: pattern1.c:286:70: warning: array subscript has type ‘char’ [-Wchar-subscripts] 286 | positionProbability = seedSearch->standardProb[seedSearch->order[c]]; | ~~~~~~~~~~~~~~~~~^~~ pattern1.c:303:71: warning: array subscript has type ‘char’ [-Wchar-subscripts] 303 | positionProbability += seedSearch->standardProb[seedSearch->order[c]]; | ~~~~~~~~~~~~~~~~~^~~ pattern1.c:317:71: warning: array subscript has type ‘char’ [-Wchar-subscripts] 317 | positionProbability -= seedSearch->standardProb[seedSearch->order[c]]; | ~~~~~~~~~~~~~~~~~^~~ pattern1.c: In function ‘find_hitsS_DNA’: pattern1.c:534:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 534 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ^~~ pattern1.c:547:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 547 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ^~~ pattern1.c: At top level: pattern1.c:744:8: warning: return type defaults to ‘int’ [-Wimplicit-int] 744 | static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch) | ^~~ pattern1.c: In function ‘and’: pattern1.c:750:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 750 | if (result[i] = (a[i] & b[i])) | ^~~~~~ pattern1.c: In function ‘align’: pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1102 | if (leftd >= 1) | ^ pattern1.c: In function ‘pat_output’: pattern1.c:1637:2: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1637 | else | ^~~~ pattern1.c:1639:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1639 | ValNodeCopyStr(info_vnp, 0, buffer); | ^~~~~~~~~~~~~~ At top level: pattern1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: pattern1.c,v 6.22 2006/08/04 21:11:17 papadopo Exp $"; | ^~~~~ pattern1.c: In function ‘align’: pattern1.c:1158:8: warning: ‘CDrow’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1158 | score = (CDrow-1)->CC; | ~~~~~~^~~~~~~~~~~~~~~ pattern1.c: In function ‘get_patLL’: pattern1.c:1393:5: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1393 | for (j = 0; j < pos; j+= wordIndex) { | ^~~ pattern1.c: In function ‘get_patL’: pattern1.c:1348:10: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1348 | *end = wordIndex*BITS_PACKED_PER_WORD+j; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pattern1.c: In function ‘init_pattern’: pattern1.c:359:39: warning: ‘tj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 359 | patternSearch->inputPatternMasked[i] = tempInputPatternMasked[i]; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ pattern1.c: In function ‘align_of_pattern’: pattern1.c:1506:23: warning: ‘data’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1506 | local_score += ALIGN_B(querySeq-1, dbSeq-1, hitArray1[wordIndex+1], hitArray2[wordIndex+1], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1507 | BAND_LOW, BAND_HIGH, matrix, gap_open, gap_extend, alignScript, data); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF impatool.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from impatool.c:73: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ impatool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: impatool.c,v 6.16 2006/06/30 18:44:40 camacho Exp $"; | ^~~~~ In file included from ../include/ncbi.h:59, from impatool.c:73: impatool.c: In function ‘IMPALAPrintHelp’: ../include/ncbimem.h:232:23: warning: ‘ret_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ impatool.c:288:10: note: ‘ret_buffer’ was declared here 288 | CharPtr ret_buffer; | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF posit2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from posit2.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ posit2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: posit2.c,v 6.12 2006/09/18 20:54:27 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mbalign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/mbalign.h:4, from mbalign.c:176: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mbalign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: mbalign.c,v 6.43 2006/02/02 17:57:34 papadopo Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vecscrn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vecscrn.h:74, from vecscrn.c:103: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vecscrn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: vecscrn.c,v 6.137 2005/12/27 14:46:44 madden Exp $"; | ^~~~~ vecscrn.c: In function ‘VSPrintOverviewFromSeqLocs’: vecscrn.c:1078:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1078 | while (tmp) | ^ vecscrn.c: In function ‘VSPrintListFromSeqLocs’: vecscrn.c:1188:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1188 | while (tmp) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mblast.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mblast.c:710: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mblast.c: In function ‘BioseqMegaBlastEngineCore’: mblast.c:961:12: warning: statement with no effect [-Wunused-value] 961 | stop_timer("BioseqBlastEngineCore: before do_the_blast_run()"); | ^ mblast.c:987:12: warning: statement with no effect [-Wunused-value] 987 | stop_timer("MegaBlastEngineCore: after do_the_blast_run()"); | ^ mblast.c:942:14: warning: variable ‘seqalign’ set but not used [-Wunused-but-set-variable] 942 | SeqAlignPtr seqalign, PNTR seqalignp; | ^~~~~~~~ mblast.c: In function ‘MegaBlastSetUpSearchInternalByLoc’: mblast.c:1167:16: warning: variable ‘avglen’ set but not used [-Wunused-but-set-variable] 1167 | Nlm_FloatHi avglen; | ^~~~~~ mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’: mblast.c:1829:14: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable] 1829 | SeqLocPtr slp; | ^~~ mblast.c: In function ‘MegaBlastWordFinder_disc_1b’: mblast.c:2372:32: warning: variable ‘mask’ set but not used [-Wunused-but-set-variable] 2372 | register Int4 s_off, ecode, mask, q_off, extra_code; | ^~~~ At top level: mblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: mblast.c,v 6.215 2006/09/21 13:42:37 madden Exp $"; | ^~~~~ mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’: mblast.c:1864:19: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1864 | sap->next = seqalign_var; | ~~~~~~~~~~^~~~~~~~~~~~~~ mblast.c: In function ‘MegaBlastWordFinder_disc’: mblast.c:2250:53: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2250 | (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) { | ~~~~~~~^~~~~~~~~~~~~~~ mblast.c:2151:47: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2151 | for (q_off = lookup->mb_lt->hashtable[ecode1]; q_off>0; | ^ mblast.c: In function ‘MegaBlastWordFinder’: mblast.c:2620:54: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2620 | (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) { | ~~~~~~~^~~~~~~~~~~~~~~ mblast.c:2373:17: note: ‘ecode2’ was declared here 2373 | Int4 ecode1, ecode2; | ^~~~~~ mblast.c:2475:52: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2475 | (((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0) | ~~~~~~~^~~~~~~~~~~~~~~ mblast.c:2373:9: note: ‘ecode1’ was declared here 2373 | Int4 ecode1, ecode2; | ^~~~~~ mblast.c: In function ‘MegaBlastGapInfoToSeqAlign’: mblast.c:3504:16: warning: ‘seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3504 | SeqAlignPtr seqalign, seqalign_var, sap; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF rpsutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/rpsutil.h:128, from rpsutil.c:281: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rpsutil.c: In function ‘RPSBlastSearchLight’: rpsutil.c:1838:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 1838 | Int2 status; | ^~~~~~ rpsutil.c: In function ‘SaveUntilChar’: rpsutil.c:2190:13: warning: comparison between pointer and zero character constant [-Wpointer-compare] 2190 | if (ptr != NULLB) | ^~ rpsutil.c:2190:9: note: did you mean to dereference the pointer? 2190 | if (ptr != NULLB) | ^ rpsutil.c: In function ‘RPSBgetCddHits’: rpsutil.c:2210:21: warning: variable ‘found_score’ set but not used [-Wunused-but-set-variable] 2210 | Boolean found_score = FALSE; | ^~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from rpsutil.c:282: rpsutil.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ rpsutil.c: In function ‘getAuxInformation’: rpsutil.c:398:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 398 | fscanf(matrixAuxiliaryFile,"%s",underlyingMatrixName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:404:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 404 | fscanf(matrixAuxiliaryFile,"%d\n", gap_open); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:405:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 405 | fscanf(matrixAuxiliaryFile,"%d\n", gap_extend); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | fscanf(matrixAuxiliaryFile, "%le", &Kungapped); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:407:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 407 | fscanf(matrixAuxiliaryFile, "%le", &Hungapped); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:408:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 408 | fscanf(matrixAuxiliaryFile, "%d", &maxLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:409:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 409 | fscanf(matrixAuxiliaryFile, "%d", &dbLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:410:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 410 | fscanf(matrixAuxiliaryFile, "%lf", &privateScalingFactor); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:415:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 415 | fscanf(matrixAuxiliaryFile, "%d", &maxLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:416:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 416 | fscanf(matrixAuxiliaryFile, "%le", &(rpsinfo->karlinK[index])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: rpsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: rpsutil.c,v 6.76 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ rpsutil.c: In function ‘RPSInitEx’: rpsutil.c:451:28: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 451 | sprintf(rps_matrix, "%s.rps", rpsinfo->rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/rpsutil.h:128, from rpsutil.c:281: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:452:28: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 452 | sprintf(rps_lookup, "%s.loo", rpsinfo->rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/rpsutil.h:128, from rpsutil.c:281: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:453:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 453 | sprintf(rps_aux, "%s.aux", rpsinfo->rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/rpsutil.h:128, from rpsutil.c:281: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c: In function ‘RPSAlignTraceBack’: rpsutil.c:1444:32: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1444 | search->sbp->posMatrix = posMatrix; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ rpsutil.c:1433:24: warning: ‘rev_subject_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1433 | seqalign = BlastGetGapAlgnTbck (search, 0, TRUE, FALSE, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1434 | subject, subject_length, | ~~~~~~~~~~~~~~~~~~~~~~~~ 1435 | rev_subject, rev_subject_length); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c: In function ‘RPSCalcEValue’: rpsutil.c:1269:30: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1269 | search->sbp->posMatrix = posMatrix; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/rpsutil.h:128, from rpsutil.c:281: rpsutil.c: In function ‘RPSBgetCddHits’: ../include/ncbistr.h:284:20: warning: ‘dbname’ may be used uninitialized in this function [-Wmaybe-uninitialized] 284 | #define Nlm_StrCmp strcmp | ^~~~~~ rpsutil.c:2212:21: note: ‘dbname’ was declared here 2212 | CharPtr dbname; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF kappa.c kappa.c: In function ‘Kappa_SequenceGetProteinRange’: kappa.c:1399:7: warning: unused variable ‘i’ [-Wunused-variable] 1399 | int i; | ^ At top level: kappa.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: kappa.c,v 6.94 2013/11/04 15:42:10 boratyng Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF xmlblast.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/xmlblast.h:89, from xmlblast.c:171: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ xmlblast.c: In function ‘PSIXmlInit’: xmlblast.c:1239:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 1239 | Boolean retval = FALSE; | ^~~~~~ At top level: xmlblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: xmlblast.c,v 6.41 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ xmlblast.c: In function ‘BXMLGetSeqLineForStdSeg’: xmlblast.c:373:28: warning: ‘genetic_code2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 373 | CharPtr genetic_code1, genetic_code2; | ^~~~~~~~~~~~~ xmlblast.c: In function ‘BXMLSeqAlignToHits’: xmlblast.c:867:36: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 867 | if((hspp->next = BXMLGetHspFromSeqAlign(sap2, is_aa, chain, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 | is_ooframe, mask_loc)) == NULL) | ~~~~~~~~~~~~~~~~~~~~~~ xmlblast.c: In function ‘SeqAlignToHits’: xmlblast.c:1646:24: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1646 | hspp->next = GetHspFromSeqAlign(sap2, ungapped, &hsp_count); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bxmlobj.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from bxmlobj.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bxmlobj.c: In function ‘BlastOutputAsnRead’: bxmlobj.c:96:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 96 | AsnReadFunc func; | ^~~~ bxmlobj.c: In function ‘ParametersAsnRead’: bxmlobj.c:361:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 361 | AsnReadFunc func; | ^~~~ bxmlobj.c:360:12: warning: unused variable ‘isError’ [-Wunused-variable] 360 | Boolean isError = FALSE; | ^~~~~~~ bxmlobj.c: In function ‘IterationAsnRead’: bxmlobj.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 613 | AsnReadFunc func; | ^~~~ bxmlobj.c: In function ‘StatisticsAsnRead’: bxmlobj.c:829:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 829 | AsnReadFunc func; | ^~~~ bxmlobj.c:828:12: warning: unused variable ‘isError’ [-Wunused-variable] 828 | Boolean isError = FALSE; | ^~~~~~~ bxmlobj.c: In function ‘HitAsnRead’: bxmlobj.c:1039:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1039 | AsnReadFunc func; | ^~~~ bxmlobj.c: In function ‘HspAsnRead’: bxmlobj.c:1244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1244 | AsnReadFunc func; | ^~~~ bxmlobj.c:1243:12: warning: unused variable ‘isError’ [-Wunused-variable] 1243 | Boolean isError = FALSE; | ^~~~~~~ At top level: bxmlobj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bxmlobj.c,v 6.11 2006/09/18 15:20:39 bealer Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/tofasta.h:47, from ../include/dotseq.h:63, from dotseq.c:86: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dotseq.c:96:36: warning: missing braces around initializer [-Wmissing-braces] 96 | static Int4 DOTblosum62[24][24] = { | ^ 97 | 4, -1, -2, -2, 0, -1, -1, 0, -2, -1, -1, -1, -1, -2, -1, 1, 0, -3, -2, 0, -2, -1, 0, -4, | { } 98 | -1, 5, 0, -2, -3, 1, 0, -2, 0, -3, -2, 2, -1, -3, -2, -1, -1, -3, -2, -3, -1, 0, -1, -4, | { } 99 | -2, 0, 6, 1, -3, 0, 0, 0, 1, -3, -3, 0, -2, -3, -2, 1, 0, -4, -2, -3, 3, 0, -1, -4, | { } 100 | -2, -2, 1, 6, -3, 0, 2, -1, -1, -3, -4, -1, -3, -3, -1, 0, -1, -4, -3, -3, 4, 1, -1, -4, | { } 101 | 0, -3, -3, -3, 9, -3, -4, -3, -3, -1, -1, -3, -1, -2, -3, -1, -1, -2, -2, -1, -3, -3, -2, -4, | { } 102 | -1, 1, 0, 0, -3, 5, 2, -2, 0, -3, -2, 1, 0, -3, -1, 0, -1, -2, -1, -2, 0, 3, -1, -4, | { } 103 | -1, 0, 0, 2, -4, 2, 5, -2, 0, -3, -3, 1, -2, -3, -1, 0, -1, -3, -2, -2, 1, 4, -1, -4, | { } 104 | 0, -2, 0, -1, -3, -2, -2, 6, -2, -4, -4, -2, -3, -3, -2, 0, -2, -2, -3, -3, -1, -2, -1, -4, | { } 105 | -2, 0, 1, -1, -3, 0, 0, -2, 8, -3, -3, -1, -2, -1, -2, -1, -2, -2, 2, -3, 0, 0, -1, -4, | { } 106 | -1, -3, -3, -3, -1, -3, -3, -4, -3, 4, 2, -3, 1, 0, -3, -2, -1, -3, -1, 3, -3, -3, -1, -4, | { } 107 | -1, -2, -3, -4, -1, -2, -3, -4, -3, 2, 4, -2, 2, 0, -3, -2, -1, -2, -1, 1, -4, -3, -1, -4, | { } 108 | -1, 2, 0, -1, -3, 1, 1, -2, -1, -3, -2, 5, -1, -3, -1, 0, -1, -3, -2, -2, 0, 1, -1, -4, | { } 109 | -1, -1, -2, -3, -1, 0, -2, -3, -2, 1, 2, -1, 5, 0, -2, -1, -1, -1, -1, 1, -3, -1, -1, -4, | { } 110 | -2, -3, -3, -3, -2, -3, -3, -3, -1, 0, 0, -3, 0, 6, -4, -2, -2, 1, 3, -1, -3, -3, -1, -4, | { } 111 | -1, -2, -2, -1, -3, -1, -1, -2, -2, -3, -3, -1, -2, -4, 7, -1, -1, -4, -3, -2, -2, -1, -2, -4, | { } 112 | 1, -1, 1, 0, -1, 0, 0, 0, -1, -2, -2, 0, -1, -2, -1, 4, 1, -3, -2, -2, 0, 0, 0, -4, | { } 113 | 0, -1, 0, -1, -1, -1, -1, -2, -2, -1, -1, -1, -1, -2, -1, 1, 5, -2, -2, 0, -1, -1, 0, -4, | { } 114 | -3, -3, -4, -4, -2, -2, -3, -2, -2, -3, -2, -3, -1, 1, -4, -3, -2, 11, 2, -3, -4, -3, -2, -4, | { } 115 | -2, -2, -2, -3, -2, -1, -2, -3, 2, -1, -1, -2, -1, 3, -3, -2, -2, 2, 7, -1, -3, -2, -1, -4, | { } 116 | 0, -3, -3, -3, -1, -2, -2, -3, -3, 3, 1, -2, 1, -1, -2, -2, 0, -3, -1, 4, -3, -2, -1, -4, | { } 117 | -2, -1, 3, 4, -3, 0, 1, -1, 0, -3, -4, 0, -3, -3, -2, 0, -1, -4, -3, -3, 4, 1, -1, -4, | { } 118 | -1, 0, 0, 1, -3, 3, 4, -2, 0, -3, -3, 1, -1, -3, -1, 0, -1, -3, -2, -2, 1, 4, -1, -4, | { } 119 | 0, -1, -1, -1, -2, -1, -1, -1, -1, -1, -1, -1, -1, -1, -2, 0, 0, -2, -1, -1, -1, -1, -1, -4, | { } 120 | -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, 1 | { 121 | }; | } dotseq.c: In function ‘DOT_BuildPLookup’: dotseq.c:887:31: warning: variable ‘found_ambig’ set but not used [-Wunused-but-set-variable] 887 | Boolean EXACTMATCH, found_ambig, saved_index = FALSE; | ^~~~~~~~~~~ dotseq.c:885:19: warning: unused variable ‘threshold’ [-Wunused-variable] 885 | Int4 threshold=13; /* one-hit heuristics T must be at least 13*/ | ^~~~~~~~~ dotseq.c:883:19: warning: unused variable ‘index’ [-Wunused-variable] 883 | Int4 index = 0; | ^~~~~ dotseq.c: In function ‘DOT_ComputeHits’: dotseq.c:1043:47: warning: variable ‘q_end’ set but not used [-Wunused-but-set-variable] 1043 | Uint1Ptr s, subject0, s_end, q_end; | ^~~~~ dotseq.c:1041:19: warning: unused variable ‘saved_index’ [-Wunused-variable] 1041 | Boolean saved_index = FALSE; | ^~~~~~~~~~~ dotseq.c:1039:19: warning: unused variable ‘threshold’ [-Wunused-variable] 1039 | Int4 threshold=13; | ^~~~~~~~~ dotseq.c: In function ‘DOT_SPI_FindBestAlnByDotPlot’: dotseq.c:2016:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 2016 | Uint1 strand; | ^~~~~~ dotseq.c:2015:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable] 2015 | Int4 start2; | ^~~~~~ dotseq.c:2014:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable] 2014 | Int4 start1; | ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from dotseq.c:87: dotseq.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ dotseq.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: dotseq.c,v 6.14 2006/07/13 17:16:20 bollin Exp $"; | ^~~~~ dotseq.c: In function ‘DOT_BuildHitList’: dotseq.c:1310:19: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1310 | Int4 index; | ^~~~~ dotseq.c:1309:19: warning: ‘hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1309 | DOTDiagPtr PNTR hitlist; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF spidey.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/spidey.h:102, from spidey.c:263: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ spidey.c: In function ‘SPI_PrintResult’: spidey.c:1740:21: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 1740 | Int4 offset; | ^~~~~~ spidey.c: In function ‘SPI_AlnSinglemRNAToPieces’: spidey.c:2854:19: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 2854 | if (spot->from == spot->to == 0) | ~~~~~~~~~~~^~~~~~~~~~~ spidey.c: In function ‘SPI_FillInLastmRNAHoles’: spidey.c:6299:21: warning: variable ‘internal’ set but not used [-Wunused-but-set-variable] 6299 | Boolean internal; | ^~~~~~~~ spidey.c: In function ‘SPI_FindBestAlnByDotPlot’: spidey.c:6445:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 6445 | Uint1 strand; | ^~~~~~ spidey.c:6444:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable] 6444 | Int4 start2; | ^~~~~~ spidey.c:6443:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable] 6443 | Int4 start1; | ^~~~~~ spidey.c: In function ‘SPI_ConnectAlnPieces’: spidey.c:7814:30: warning: variable ‘tmparray’ set but not used [-Wunused-but-set-variable] 7814 | SPI_FragPtr PNTR tmparray; | ^~~~~~~~ spidey.c:7800:25: warning: variable ‘sfpprev’ set but not used [-Wunused-but-set-variable] 7800 | SPI_FragPtr sfpprev; | ^~~~~~~ spidey.c: In function ‘SPI_AdjustSplicesInPieces’: spidey.c:8448:23: warning: variable ‘minus’ set but not used [-Wunused-but-set-variable] 8448 | Boolean minus; | ^~~~~ spidey.c: In function ‘SPI_CheckMrnaOrder’: spidey.c:10296:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 10296 | if ((ival->strand == Seq_strand_plus == ival2->strand spidey.c:10300:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 10300 | || (ival->strand == Seq_strand_minus == ival2->strand spidey.c:10313:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 10313 | if ((ival->strand == Seq_strand_plus == ival2->strand spidey.c:10315:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 10315 | || (ival->strand == Seq_strand_plus == ival2->strand In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/spidey.h:103, from spidey.c:263: spidey.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ spidey.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: spidey.c,v 6.74 2016/09/02 14:57:38 ucko Exp $"; | ^~~~~ spidey.c: In function ‘SPI_GetProteinFrommRNA’: spidey.c:9777:14: warning: ‘c3start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9777 | tmp += c3start; | ^~ spidey.c:9765:14: warning: ‘c1start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9765 | tmp += c1start; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF motif.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/motif.h:45, from motif.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ motif.c: In function ‘MOT_FindPolyA’: motif.c:86:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable] 86 | Uint1 buf[MOT_WINSIZE]; | ^~~ motif.c: In function ‘MOT_FindKozak’: motif.c:216:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable] 216 | Uint1 buf[MOT_WINSIZE]; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/motif.h:48, from motif.c:47: motif.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ motif.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: motif.c,v 6.7 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blfmtutl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blfmtutl.c:175: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blfmtutl.c: In function ‘CBStatisticsGetReference’: blfmtutl.c:593:4: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 593 | } else | ^~~~ blfmtutl.c:595:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 595 | add_string_to_bufferEx("Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,", &ret_buffer, &ret_buffer_length, TRUE); | ^~~~~~~~~~~~~~~~~~~~~~ blfmtutl.c: In function ‘BlastPrintTabularResults’: blfmtutl.c:1281:16: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1281 | for (index=1; ssp->next; index++) | ^~~ blfmtutl.c:1283:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1283 | num_gap_opens = index / 2; | ^~~~~~~~~~~~~ At top level: blfmtutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blfmtutl.c,v 1.44 2012/10/10 14:05:50 fongah2 Exp $"; | ^~~~~ blfmtutl.c: In function ‘BlastPrintTabularResults’: blfmtutl.c:1117:13: warning: ‘alignments_count’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1117 | if (--alignments_count < 0) | ^ blfmtutl.c:1353:19: warning: ‘s_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1353 | s_end += s_shift; | ~~~~~~^~~~~~~~~~ blfmtutl.c:1352:21: warning: ‘s_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1352 | s_start += s_shift; | ~~~~~~~~^~~~~~~~~~ blfmtutl.c:1351:19: warning: ‘q_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1351 | q_end += q_shift; | ~~~~~~^~~~~~~~~~ blfmtutl.c:1350:21: warning: ‘q_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1350 | q_start += q_shift; | ~~~~~~~~^~~~~~~~~~ blfmtutl.c:1081:24: warning: ‘query_id’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1081 | while (slp && SeqIdComp(query_id, SeqLocId(slp)) != SIC_YES) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blfmtutl.c: In function ‘BlastSetUserErrorString’: blfmtutl.c:1413:26: warning: ‘title’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1413 | CharPtr buf_start, ptr, title; | ^~~~~ rm -f libncbitool.a ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbitool.a ../lib ranlib ../lib/libncbitool.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF compo_heap.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smith_waterman.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF redo_alignment.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c rm -f libblastcompadj.a ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libblastcompadj.a ../lib ranlib ../lib/libblastcompadj.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfontg.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontmb.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfontmb.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfontt.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pictogif.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from pictogif.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfontl.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfonts.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfonts.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -DWIN_GIF -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ncbidrwg.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbidrwg.c: In function ‘Nlm_ClearRgn’: ncbidrwg.c:6081:16: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable] 6081 | Nlm_RgnTool ntool; | ^~~~~ ncbidrwg.c: In function ‘Nlm_DiffRgn’: ncbidrwg.c:6273:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable] 6273 | Nlm_RgnTool ntool3; | ^~~~~~ ncbidrwg.c:6272:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable] 6272 | Nlm_RgnTool ntool2; | ^~~~~~ ncbidrwg.c:6271:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable] 6271 | Nlm_RgnTool ntool1; | ^~~~~~ ncbidrwg.c: In function ‘Nlm_XorRgn’: ncbidrwg.c:6324:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable] 6324 | Nlm_RgnTool ntool3; | ^~~~~~ ncbidrwg.c:6323:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable] 6323 | Nlm_RgnTool ntool2; | ^~~~~~ ncbidrwg.c:6322:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable] 6322 | Nlm_RgnTool ntool1; | ^~~~~~ ncbidrwg.c: In function ‘Nlm_EqualRgn’: ncbidrwg.c:6353:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable] 6353 | Nlm_RgnTool ntool2; | ^~~~~~ ncbidrwg.c:6352:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable] 6352 | Nlm_RgnTool ntool1; | ^~~~~~ ncbidrwg.c: In function ‘Nlm_EmptyRgn’: ncbidrwg.c:6381:17: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable] 6381 | Nlm_RgnTool ntool; | ^~~~~ ncbidrwg.c: In function ‘Nlm_CopyPixmap’: ncbidrwg.c:7040:25: warning: variable ‘height’ set but not used [-Wunused-but-set-variable] 7040 | Nlm_Int2 height; | ^~~~~~ ncbidrwg.c:7039:25: warning: variable ‘width’ set but not used [-Wunused-but-set-variable] 7039 | Nlm_Int2 width; | ^~~~~ ncbidrwg.c: In function ‘Nlm_GetColorRGB’: ncbidrwg.c:1373:10: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1373 | return (Nlm_Uint4)i; | ^~~~~~~~~~~~ rm -f libvibgif.a ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibgif.a ../lib ranlib ../lib/libvibgif.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF algorend.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/viewer3d.h:125, from algorend.c:584: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ algorend.c: In function ‘ColorFromSS’: algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable] 893 | Int2 rsult = 0; | ^~~~~ algorend.c: In function ‘Cn3D_RenWire’: algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable] 1400 | PMLD pmldThis = NULL; | ^~~~~~~~ algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1399 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 1398 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c: In function ‘Cn3D_ColSeqCons’: algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1795 | pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i); | ^ algorend.c: In function ‘RenderObject’: algorend.c:3135:25: warning: variable ‘fZTo’ set but not used [-Wunused-but-set-variable] 3135 | FloatLo fXTo, fYTo, fZTo; | ^~~~ algorend.c:3135:19: warning: variable ‘fYTo’ set but not used [-Wunused-but-set-variable] 3135 | FloatLo fXTo, fYTo, fZTo; | ^~~~ algorend.c:3135:13: warning: variable ‘fXTo’ set but not used [-Wunused-but-set-variable] 3135 | FloatLo fXTo, fYTo, fZTo; | ^~~~ algorend.c:3134:29: warning: variable ‘fZFrom’ set but not used [-Wunused-but-set-variable] 3134 | FloatLo fXFrom, fYFrom, fZFrom; | ^~~~~~ algorend.c:3134:21: warning: variable ‘fYFrom’ set but not used [-Wunused-but-set-variable] 3134 | FloatLo fXFrom, fYFrom, fZFrom; | ^~~~~~ algorend.c:3134:13: warning: variable ‘fXFrom’ set but not used [-Wunused-but-set-variable] 3134 | FloatLo fXFrom, fYFrom, fZFrom; | ^~~~~~ algorend.c: In function ‘RenderLabel’: algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 3393 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c: In function ‘RenderBond’: algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3554 | PMSD pmsdParent = NULL; | ^~~~~~~~~~ algorend.c: In function ‘RenderHalfWormBond’: algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3673 | PMSD pmsdParent; | ^~~~~~~~~~ algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable] 3671 | PMAD pmad0, pmad1, pmad2, pmad3; | ^~~~~ algorend.c: In function ‘RenderAnAtom’: algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable] 3758 | PMAD pmadFrom = NULL; | ^~~~~~~~ algorend.c:3757:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3757 | PMSD pmsdParent = NULL; | ^~~~~~~~~~ algorend.c: In function ‘RenderAllAtom’: algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable] 3829 | int iMenu; | ^~~~~ algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable] 3815 | PVNMB pvnmbThis = NULL; | ^~~~~~~~~ algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable] 3811 | PVNMA pvnmaThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘RenderGraph’: algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable] 4498 | Byte bReservedThis = 0; | ^~~~~~~~~~~~~ algorend.c: In function ‘LabelChainTermini’: algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable] 4772 | PMBD pmbdThis = NULL; | ^~~~~~~~ algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable] 4771 | PVNMB pvnmbThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘RenderMolecule’: algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable] 4871 | PDNMM pdnmmThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘fnARLoop’: algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 5556 | Int2 iTest; | ^~~~~ algorend.c: In function ‘AlgorithmicRendering’: algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable] 5684 | Int2 i = 0; | ^ algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable] 5683 | Int2 Cn3d_LayerNow_sofar = 0; | ^~~~~~~~~~~~~~~~~~~ algorend.c: In function ‘Do3DOrigin’: algorend.c:5756:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 5756 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c:5751:13: warning: variable ‘fTo’ set but not used [-Wunused-but-set-variable] 5751 | FloatLo fTo[3]; | ^~~ algorend.c:5750:13: warning: variable ‘fFrom’ set but not used [-Wunused-but-set-variable] 5750 | FloatLo fFrom[3]; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from algorend.c:598: algorend.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function] 2265 | static void LabelGroupOnOffProc(GrouP g) | ^~~~~~~~~~~~~~~~~~~ algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable] 717 | static Boolean Cn3d_CopyToNode = FALSE; | ^~~~~~~~~~~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: algorend.c: In function ‘RenderLabel’: ../include/pictur3d.h:235:27: warning: ‘iX’ may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | #define AddText3D Nlm_AddText3D | ^~~~~~~~~~~~~ algorend.c:3389:10: note: ‘iX’ was declared here 3389 | Int4 iX, iY, iZ; | ^~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:235:27: warning: ‘iY’ may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | #define AddText3D Nlm_AddText3D | ^~~~~~~~~~~~~ algorend.c:3389:14: note: ‘iY’ was declared here 3389 | Int4 iX, iY, iZ; | ^~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:235:27: warning: ‘iZ’ may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | #define AddText3D Nlm_AddText3D | ^~~~~~~~~~~~~ algorend.c:3389:18: note: ‘iZ’ was declared here 3389 | Int4 iX, iY, iZ; | ^~ algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3448 | fZCen += fZt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3447 | fYCen += fYt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3446 | fXCen += fXt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3449 | fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo); | ~~~~~~~^~~~~~~ algorend.c:3449:77: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3449 | fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo); | ~~~~~~~^~~~~~~ algorend.c:3450:41: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3450 | fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo); | ~~~~~~~^~~~~~~ algorend.c: In function ‘MasterChangeRenderProc.constprop’: algorend.c:1316:33: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1316 | pars->SolventRender = k; | ~~~~~~~~~~~~~~~~~~~~^~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: algorend.c: In function ‘RenderObject’: ../include/pictur3d.h:234:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3136:10: note: ‘iXFrom’ was declared here 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3136:18: note: ‘iYFrom’ was declared here 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3136:26: note: ‘iZFrom’ was declared here 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3137:10: note: ‘iXTo’ was declared here 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3137:16: note: ‘iYTo’ was declared here 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3137:22: note: ‘iZTo’ was declared here 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: algorend.c: In function ‘Do3DOrigin’: ../include/pictur3d.h:232:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5752:10: note: ‘iXFrom’ was declared here 5752 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5752:18: note: ‘iYFrom’ was declared here 5752 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5752:26: note: ‘iZFrom’ was declared here 5752 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5753:10: note: ‘iXTo’ was declared here 5753 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5753:16: note: ‘iYTo’ was declared here 5753 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5753:22: note: ‘iZTo’ was declared here 5753 | Int4 iXTo, iYTo, iZTo; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmsel.c:60: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dopen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dopen.c:394: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dopen.c: In function ‘Cn3D_OpenStart’: cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable] 722 | Int4 iBioseq = 0; | ^~~~~~~ cn3dopen.c: In function ‘MMDB_ReadMime’: cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1000 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable] 989 | BiostrucAlignSeqPtr pbsasThis = NULL; | ^~~~~~~~~ cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’: cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 1310 | ButtoN b; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dopen.c:412: cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from cn3dopen.c:413: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable] 431 | static ButtoN Cn3D_bOpenBrowse; | ^~~~~~~~~~~~~~~~ cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable] 430 | static WindoW Cn3D_wOpen; | ^~~~~~~~~~ cn3dopen.c: In function ‘MMDB_ReadMime’: cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 529 | SAM_ReplaceGI(salp); | ^~~~~~~~~~~~~~~~~~~ cn3dopen.c:513:15: note: ‘salp’ was declared here 513 | SeqAlign *salp; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dsave.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dsave.c:157: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dsave.c: In function ‘Cn3D_ExportAsnNow’: cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 375 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable] 372 | BiostrucFeaturePtr pbsfThis; | ^~~~~~~~ cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable] 366 | PMSD pmsdSlave = NULL, pmsdMaster = NULL; | ^~~~~~~~~ cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable] 362 | Boolean iCn3d = TRUE, FirstSlave = FALSE; | ^~~~~~~~~~ cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable] 357 | CharPtr pcSave = NULL; | ^~~~~~ cn3dsave.c: In function ‘Cn3D_SaveBiostruc’: cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 524 | ButtoN b; | ^ cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 523 | GrouP gMS; | ^~~ cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 518 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dsave.c: In function ‘Cn3D_ExportDictNow’: cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable] 598 | CharPtr pcSave = NULL; | ^~~~~~ cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable] 596 | Int4 iCount = 0; | ^~~~~~ cn3dsave.c: In function ‘Cn3D_SaveDictionary’: cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 629 | ButtoN b; | ^ cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 624 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dsave.c: In function ‘Cn3D_SaveSub’: cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 688 | IteM i; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dsave.c:171: cn3dsave.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable] 184 | static ButtoN Cn3D_bFeatOn; | ^~~~~~~~~~~~ In file included from cn3dsave.c:165: ../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable] 119 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable] 118 | static AsnTypePtr at = atx; | ^~ ../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable] 117 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnmime.h12"; | ^~~~~~~~~~~ cn3dsave.c: In function ‘Cn3D_GetSubSet’: cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 289 | isep->next = SeqEntryNew(); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dxprt.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportPDB’: cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 209 | ButtoN b; | ^ cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 208 | GrouP gMS; | ^~~ cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 203 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportKin’: cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 381 | ButtoN b; | ^ cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 380 | GrouP gMS; | ^~~ cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 375 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportSub’: cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 513 | IteM i; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dwin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dwin.c:647: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces] 733 | { | ^ 734 | 255, 255, 255, /* default 0 */ | { } 735 | 255, 20, 147, /* hotpink 1 */ | { } 736 | 255, 0, 255, /* magenta 2 */ | { } 737 | 155, 48, 255, /* purple 3 */ | { } 738 | 0, 0, 255, /* blue 4 */ | { } 739 | 30, 144, 255, /* sky 5 */ | { } 740 | 0, 255, 255, /* cyan 6 */ | { } 741 | 0, 255, 127, /* sea 7 */ | { } 742 | 0, 255, 0, /* green 8 */ | { } 743 | 255, 255, 0, /* yellow 9 */ | { } 744 | 255, 165, 0, /* gold 10 */ | { } 745 | 255, 69, 0, /* orange 11 */ | { } 746 | 255, 0, 0, /* red 12 */ | { } 747 | 255, 114, 86, /* pink 13 */ | { } 748 | 255, 174, 185, /* pinktint 14 */ | { } 749 | 255, 255, 255, /* white 15 */ | { } 750 | 0, 0, 0, /* black 16 */ | { } 751 | 176, 226, 255, /* bluetint 17 */ | { } 752 | 154, 255, 154, /* greentint 18 */ | { } 753 | 255, 236, 139, /* yellowtint 19 */ | { } 754 | 125, 125, 125, /* gray 20 */ | { } 755 | 139, 87, 66, /* brown 21 */ | { } 756 | 255, 0, 0, /* perm colors 22: red */ | { } 757 | 0, 255, 0, /* perm colors 23: green */ | { } 758 | 255, 0, 255, /* perm colors 24: magenta */ | { } 759 | 30, 144, 255, /* perm colors 25: sky */ | { } 760 | 155, 48, 255, /* perm colors 26: purple */ | { } 761 | 0, 255, 0, /* SS colors 27: helix, green */ | { } 762 | 255, 165, 0, /* SS colors 28: strand, gold */ | { } 763 | 255, 69, 0, /* SS colors 29: turn, orange */ | { } 764 | 0, 255, 255, /* SS colors 30: coil, cyan */ | { } 765 | 255, 255, 0, /* highlight colors 31: yellow */ | { } 766 | 0, 0, 0, /* background colors 32: black */ | { } 767 | 160, 82, 45, /* sienna 33 */ | { } 768 | 240, 230, 140, /* khaki 34 */ | { } 769 | 171, 130, 255, /* light purple 35 */ | { } 770 | 255, 200, 0, /* orange yellow 36 */ | { } 771 | 117, 128, 160, /* 37 */ | { } 772 | 5, 53, 239, /* 38 */ | { } 773 | 27, 62, 255, /* 39 */ | { } 774 | 84, 110, 203, /* 40 */ | { } 775 | 216, 77, 84, /* 41 */ | { } 776 | 125, 128, 135, /* 42 */ | { } 777 | 237, 29, 61, /* 43 */ | { } 778 | 184, 118, 120, /* 44 */ | { } 779 | 155, 9, 0, /* 45 */ | { } 780 | 155, 119, 107, /* 46 */ | { } 781 | 80, 110, 196, /* 47 */ | { } 782 | 122, 127, 157, /* 48 */ | { } 783 | 50, 85, 241, /* 49 */ | { } 784 | 201, 93, 91, /* 50 */ | { } 785 | 254, 0, 5, /* 51 */ | { } 786 | 155, 137, 133, /* 52 */ | { } 787 | 3, 53, 246 /* 53 */ | { 788 | }; | } cn3dwin.c: In function ‘Viewer3DGroups’: cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable] 1728 | Int2 groups = 0; | ^~~~~~ cn3dwin.c: In function ‘Viewer3DViewer’: cn3dwin.c:1784:10: warning: unused variable ‘groups’ [-Wunused-variable] 1784 | Int2 groups = 0; | ^~~~~~ cn3dwin.c: In function ‘Cn3D_AlignEdit’: cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable] 1936 | Int2 iCount = 0; | ^~~~~~ cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable] 1935 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable] 1933 | SeqAlignPtr salp = NULL; | ^~~~ cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable] 1931 | PMSD pmsdMaster = NULL, pmsdSlave = NULL; | ^~~~~~~~~ cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable] 1930 | PDNMS pdnmsSlave = NULL; | ^~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/udviewer.h:219, from cn3dwin.c:665: cn3dwin.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/udviewer.h:228, from cn3dwin.c:665: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function] 1626 | static void HLmolecule_MA(MAPtr ma, | ^~~~~~~~~~~~~ cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function] 1428 | static void HLatom_MA(MAPtr ma, | ^~~~~~~~~ cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function] 929 | static void Cn3D_MoveCB(IteM i) | ^~~~~~~~~~~ cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function] 922 | static void Cn3D_ZoomCB(IteM i) | ^~~~~~~~~~~ cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable] 688 | static IteM Cn3D_iModelCtrl = NULL; | ^~~~~~~~~~~~~~~ cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable] 682 | static IteM Cn3D_iLabelCtrl = NULL; | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/cn3dmain.h:182, from cn3dentr.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmsg.c:254: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’: cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable] 593 | OMUserDataPtr omudp = NULL; | ^~~~~ In file included from ../include/sqnutils.h:51, from cn3dmsg.c:267: cn3dmsg.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dmsg.c:271: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmatn.c:173: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmatn.c: In function ‘FindMM’: cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable] 217 | PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL; | ^~~~~~~~~~~~~~ cn3dmatn.c: In function ‘DoMediaHL’: cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable] 249 | Byte MainAtom = 0; | ^~~~~~~~ cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable] 247 | PALD paldThis = NULL; | ^~~~~~~~ cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable] 246 | PVNAL pvnalThis = NULL; | ^~~~~~~~~ cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable] 245 | PMAD pmadThis = NULL; | ^~~~~~~~ cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable] 244 | PVNMA pvnmaThis = NULL; | ^~~~~~~~~ cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’: cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 372 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 371 | PMMD pmmdThis = NULL; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’: cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable] 353 | PDNMG pdnmgThis = NULL; | ^~~~~~~~~ cn3dmodl.c: In function ‘Cn3DCheckHighlighted’: cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable] 364 | PMSD pmsdMaster = NULL, pmsdSlave = NULL; | ^~~~~~~~~ cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’: cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable] 508 | PMGD pmgd = NULL; | ^~~~ cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable] 507 | PDNMG pdnmg = NULL; | ^~~~~ cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 506 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘fnAlignList’: cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable] 996 | Uint2 entityID = 0, itemtype = 0; | ^~~~~~~~ cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable] 996 | Uint2 entityID = 0, itemtype = 0; | ^~~~~~~~ cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable] 995 | SeqIdPtr sipThis = NULL; | ^~~~~~~ cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 993 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’: cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable] 1065 | PDNMG pdnmg = NULL; | ^~~~~ cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 1064 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘SetResidueVisibilities’: cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable] 1201 | PVNMO pvnmoThis = NULL; | ^~~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dmodl.c:319: cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dmodl.c:323: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dmodl.c: In function ‘Cn3D_ListDomainProc’: cn3dmodl.c:413:34: warning: ‘ ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=] 413 | sprintf(MolName, "%4s %2s %2d", | ^~ cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767] 413 | sprintf(MolName, "%4s %2s %2d", | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmodl.c:410:34: warning: ‘ ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=] 410 | sprintf(MolName, "%4s %2s", domaindata[iCount]->pcPDBName, | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dshim.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/cn3dmain.h:182, from cn3dshim.c:131: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmesh.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’: cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 103 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dmesh.c: In function ‘Cn3D_OpenMesh’: cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 151 | ButtoN b; | ^ cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’: cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 111 | fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | &(Mesh.NumTri)); | ~~~~~~~~~~~~~~~ cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 | &(Mesh.Vertices[i].Vertex[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 | &(Mesh.Vertices[i].Vertex[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 | &(Mesh.Vertices[i].Vertex[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 | &(Mesh.Vertices[i].Normal[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | &(Mesh.Vertices[i].Normal[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | &lDummy, &lDummy, &lDummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | &lDummy); | ~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dstyl.c:72: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’: cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable] 459 | SpecialFeatureInfoPtr sfipThis = NULL; | ^~~~~~~~ cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’: cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable] 641 | PARS parsThis = NULL; | ^~~~~~~~ cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 640 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’: cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable] 866 | Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn = | ^~~~~ cn3dstyl.c: In function ‘lFeatureEditedAction’: cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable] 1136 | Int4 val = 0; | ^~~ cn3dstyl.c: In function ‘bFeatureMoveAction’: cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 1153 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘bFeatureEditAction’: cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 1176 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘ModelControls’: cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable] 1364 | PrompT ppt12, ppt13, ppt14; | ^~~~~ cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’: cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable] 1728 | Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound = | ^~~~~~~~~~~~~~ cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable] 1725 | Int2 iMol = 0, iMolCurrent = 0; | ^~~~~~~~~~~ cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’: cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable] 2122 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = | ^~~~~~~~~~ cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable] 2122 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = | ^~~~~~~~~~ cn3dstyl.c: In function ‘GetUserDefinedFeature’: cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable] 2196 | SpecialFeatureInfoPtr sfipThis = NULL; | ^~~~~~~~ cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’: cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable] 2551 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 2549 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable] 2548 | PDNMM pdnmmHead = NULL; | ^~~~~~~~~ cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 2547 | PMSD pmsdThis = NULL; | ^~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dstyl.c:89: cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function] 456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable] 149 | static ButtoN bResetFeatureTitle; | ^~~~~~~~~~~~~~~~~~ cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable] 144 | static PopuP Cn3D_pupModelStyleItem; | ^~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c: In function ‘CopyLocation’: cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized] 496 | rspNew->data.ptrvalue = (VoidPtr) rsipNewHead; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqcons.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from seqcons.c:112: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from seqcons.c:115: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/alignmgr2.h:111, from ../include/actutils.h:105, from seqcons.c:116: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=] 263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] = | ^~~~~~~~~~~~~~~~~~ seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’: seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized] 402 | scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore); | ~~~~~~~~~~^~~~~~~~~~~ seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized] 402 | scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore); | ~~~~~~~~~~^~~~~~~~~~~ rm -f libncbicn3d.a ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbicn3d.a ../lib ranlib ../lib/libncbicn3d.a mv algorend.o algorend.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/shim3d.h:153, from algorend.c:582: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ algorend.c: In function ‘Cn3D_SetOGLFont’: algorend.c:791:24: warning: unused variable ‘currentUnderlined’ [-Wunused-variable] 791 | currentUnderlined = FALSE; | ^~~~~~~~~~~~~~~~~ algorend.c:790:45: warning: unused variable ‘currentItalic’ [-Wunused-variable] 790 | static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE, | ^~~~~~~~~~~~~ algorend.c:790:24: warning: unused variable ‘currentBold’ [-Wunused-variable] 790 | static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE, | ^~~~~~~~~~~ algorend.c:789:40: warning: unused variable ‘currentSize’ [-Wunused-variable] 789 | static Nlm_Int2 currentIndex = -1, currentSize = -1; | ^~~~~~~~~~~ algorend.c:789:21: warning: unused variable ‘currentIndex’ [-Wunused-variable] 789 | static Nlm_Int2 currentIndex = -1, currentSize = -1; | ^~~~~~~~~~~~ algorend.c: In function ‘ColorFromSS’: algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable] 893 | Int2 rsult = 0; | ^~~~~ algorend.c: In function ‘Cn3D_RenWire’: algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable] 1400 | PMLD pmldThis = NULL; | ^~~~~~~~ algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1399 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 1398 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c: In function ‘Cn3D_ColSeqCons’: algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1795 | pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i); | ^ algorend.c: In function ‘MasterChangeLabelsProc’: algorend.c:2075:44: warning: unused variable ‘TopOn’ [-Wunused-variable] 2075 | Boolean NumOn, NameOn, PDBOn, WhiteOn, TopOn; | ^~~~~ algorend.c:2073:13: warning: unused variable ‘k’ [-Wunused-variable] 2073 | Int2 i, k, nameval; | ^ algorend.c: In function ‘ResetLabelCtrls’: algorend.c:2272:25: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 2272 | Int2 i, val, style, size, termStyle; | ^~~~ algorend.c: In function ‘LabelControls’: algorend.c:2434:19: warning: variable ‘ppt11’ set but not used [-Wunused-but-set-variable] 2434 | PrompT ppt10, ppt11; | ^~~~~ algorend.c:2431:36: warning: unused variable ‘ppt7’ [-Wunused-variable] 2431 | PrompT ppt1, ppt2, ppt3, ppt4, ppt7, ppt8, ppt9; | ^~~~ algorend.c: In function ‘Cn3D_SetQualityFromAppParams’: algorend.c:2649:9: warning: unused variable ‘i’ [-Wunused-variable] 2649 | int i; | ^ algorend.c: In function ‘OGL_Quality’: algorend.c:2769:23: warning: unused variable ‘q’ [-Wunused-variable] 2769 | Nlm_PrompT bp, p, q; | ^ algorend.c:2769:20: warning: variable ‘p’ set but not used [-Wunused-but-set-variable] 2769 | Nlm_PrompT bp, p, q; | ^ algorend.c:2769:16: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable] 2769 | Nlm_PrompT bp, p, q; | ^~ algorend.c: In function ‘RenderControls’: algorend.c:2893:12: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable] 2893 | PrompT ppt5; | ^~~~ algorend.c: In function ‘RenderObject’: algorend.c:3138:10: warning: unused variable ‘iCylRadius’ [-Wunused-variable] 3138 | Int4 iCylRadius; | ^~~~~~~~~~ algorend.c:3137:22: warning: unused variable ‘iZTo’ [-Wunused-variable] 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ algorend.c:3137:16: warning: unused variable ‘iYTo’ [-Wunused-variable] 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ algorend.c:3137:10: warning: unused variable ‘iXTo’ [-Wunused-variable] 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ algorend.c:3136:26: warning: unused variable ‘iZFrom’ [-Wunused-variable] 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ algorend.c:3136:18: warning: unused variable ‘iYFrom’ [-Wunused-variable] 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ algorend.c:3136:10: warning: unused variable ‘iXFrom’ [-Wunused-variable] 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ algorend.c:3133:10: warning: unused variable ‘i’ [-Wunused-variable] 3133 | Int4 i = 0; | ^ algorend.c: In function ‘RenderLabel’: algorend.c:3394:10: warning: variable ‘paldPrim’ set but not used [-Wunused-but-set-variable] 3394 | PALD paldPrim = NULL; | ^~~~~~~~ algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 3393 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c:3389:18: warning: unused variable ‘iZ’ [-Wunused-variable] 3389 | Int4 iX, iY, iZ; | ^~ algorend.c:3389:14: warning: unused variable ‘iY’ [-Wunused-variable] 3389 | Int4 iX, iY, iZ; | ^~ algorend.c:3389:10: warning: unused variable ‘iX’ [-Wunused-variable] 3389 | Int4 iX, iY, iZ; | ^~ algorend.c: In function ‘RenderBond’: algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3554 | PMSD pmsdParent = NULL; | ^~~~~~~~~~ algorend.c: In function ‘RenderHalfWormBond’: algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3673 | PMSD pmsdParent; | ^~~~~~~~~~ algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable] 3671 | PMAD pmad0, pmad1, pmad2, pmad3; | ^~~~~ algorend.c: In function ‘RenderAnAtom’: algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable] 3758 | PMAD pmadFrom = NULL; | ^~~~~~~~ algorend.c: In function ‘RenderAllAtom’: algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable] 3829 | int iMenu; | ^~~~~ algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable] 3815 | PVNMB pvnmbThis = NULL; | ^~~~~~~~~ algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable] 3811 | PVNMA pvnmaThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘RenderGraph’: algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable] 4498 | Byte bReservedThis = 0; | ^~~~~~~~~~~~~ algorend.c: In function ‘LabelChainTermini’: algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable] 4772 | PMBD pmbdThis = NULL; | ^~~~~~~~ algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable] 4771 | PVNMB pvnmbThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘RenderMolecule’: algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable] 4871 | PDNMM pdnmmThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘fnARLoop’: algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 5556 | Int2 iTest; | ^~~~~ algorend.c: In function ‘AlgorithmicRendering’: algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable] 5684 | Int2 i = 0; | ^ algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable] 5683 | Int2 Cn3d_LayerNow_sofar = 0; | ^~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from algorend.c:598: algorend.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ algorend.c:789:21: warning: ‘currentIndex’ defined but not used [-Wunused-variable] 789 | static Nlm_Int2 currentIndex = -1, currentSize = -1; | ^~~~~~~~~~~~ algorend.c:789:40: warning: ‘currentSize’ defined but not used [-Wunused-variable] 789 | static Nlm_Int2 currentIndex = -1, currentSize = -1; | ^~~~~~~~~~~ algorend.c:790:24: warning: ‘currentBold’ defined but not used [-Wunused-variable] 790 | static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE, | ^~~~~~~~~~~ algorend.c:790:45: warning: ‘currentItalic’ defined but not used [-Wunused-variable] 790 | static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE, | ^~~~~~~~~~~~~ algorend.c:791:24: warning: ‘currentUnderlined’ defined but not used [-Wunused-variable] 791 | currentUnderlined = FALSE; | ^~~~~~~~~~~~~~~~~ algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function] 2265 | static void LabelGroupOnOffProc(GrouP g) | ^~~~~~~~~~~~~~~~~~~ algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable] 717 | static Boolean Cn3d_CopyToNode = FALSE; | ^~~~~~~~~~~~~~~ algorend.c: In function ‘MasterChangeRenderProc’: algorend.c:1295:29: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1295 | pars->PBBRender = k; | ~~~~~~~~~~~~~~~~^~~ algorend.c: In function ‘RenderLabel’: algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3448 | fZCen += fZt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3447 | fYCen += fYt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3446 | fXCen += fXt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3449 | fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo); | ~~~~~~~^~~~~~~ algorend.c:3438:30: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3438 | fYCen = fYTo + (fYTo - fYFrom) / 2.0; | ~~~~~~^~~~~~~~~ algorend.c:3437:30: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3437 | fXCen = fXTo + (fXTo - fXFrom) / 2.0; | ~~~~~~^~~~~~~~~ algorend.c:3449:58: warning: ‘fZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3449 | fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo); | ~~~~~~~^~~~~~~~~ algorend.c:3438:30: warning: ‘fYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3438 | fYCen = fYTo + (fYTo - fYFrom) / 2.0; | ~~~~~~^~~~~~~~~ algorend.c:3437:30: warning: ‘fXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3437 | fXCen = fXTo + (fXTo - fXFrom) / 2.0; | ~~~~~~^~~~~~~~~ mv algorend.o algorend.glo mv algorend.tmp algorend.o mv cn3dmsel.o cn3dmsel.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmsel.c:60: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv cn3dmsel.o cn3dmsel.glo mv cn3dmsel.tmp cn3dmsel.o mv cn3dopen.o cn3dopen.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dopen.c:394: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dopen.c: In function ‘Cn3D_OpenStart’: cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable] 722 | Int4 iBioseq = 0; | ^~~~~~~ cn3dopen.c: In function ‘MMDB_ReadMime’: cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1000 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable] 989 | BiostrucAlignSeqPtr pbsasThis = NULL; | ^~~~~~~~~ cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’: cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 1310 | ButtoN b; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dopen.c:412: cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from cn3dopen.c:413: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable] 431 | static ButtoN Cn3D_bOpenBrowse; | ^~~~~~~~~~~~~~~~ cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable] 430 | static WindoW Cn3D_wOpen; | ^~~~~~~~~~ cn3dopen.c: In function ‘MMDB_ReadMime’: cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 529 | SAM_ReplaceGI(salp); | ^~~~~~~~~~~~~~~~~~~ cn3dopen.c:513:15: note: ‘salp’ was declared here 513 | SeqAlign *salp; | ^~~~ mv cn3dopen.o cn3dopen.glo mv cn3dopen.tmp cn3dopen.o mv cn3dsave.o cn3dsave.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dsave.c:157: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dsave.c: In function ‘Cn3D_AddMatrix’: cn3dsave.c:206:41: warning: unused variable ‘bsfsp_new’ [-Wunused-variable] 206 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_new = NULL; | ^~~~~~~~~ cn3dsave.c: In function ‘Cn3D_ExportAsnNow’: cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 375 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable] 372 | BiostrucFeaturePtr pbsfThis; | ^~~~~~~~ cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable] 366 | PMSD pmsdSlave = NULL, pmsdMaster = NULL; | ^~~~~~~~~ cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable] 362 | Boolean iCn3d = TRUE, FirstSlave = FALSE; | ^~~~~~~~~~ cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable] 357 | CharPtr pcSave = NULL; | ^~~~~~ cn3dsave.c: In function ‘Cn3D_SaveBiostruc’: cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 524 | ButtoN b; | ^ cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 523 | GrouP gMS; | ^~~ cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 518 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dsave.c: In function ‘Cn3D_ExportDictNow’: cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable] 598 | CharPtr pcSave = NULL; | ^~~~~~ cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable] 596 | Int4 iCount = 0; | ^~~~~~ cn3dsave.c: In function ‘Cn3D_SaveDictionary’: cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 629 | ButtoN b; | ^ cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 624 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dsave.c: In function ‘Cn3D_SaveSub’: cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 688 | IteM i; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dsave.c:171: cn3dsave.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable] 184 | static ButtoN Cn3D_bFeatOn; | ^~~~~~~~~~~~ In file included from cn3dsave.c:165: ../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable] 119 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable] 118 | static AsnTypePtr at = atx; | ^~ ../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable] 117 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnmime.h12"; | ^~~~~~~~~~~ cn3dsave.c: In function ‘Cn3D_GetSubSet’: cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 289 | isep->next = SeqEntryNew(); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ mv cn3dsave.o cn3dsave.glo mv cn3dsave.tmp cn3dsave.o mv cn3dxprt.o cn3dxprt.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dxprt.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportPDB’: cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 209 | ButtoN b; | ^ cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 208 | GrouP gMS; | ^~~ cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 203 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportKin’: cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 381 | ButtoN b; | ^ cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 380 | GrouP gMS; | ^~~ cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 375 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportSub’: cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 513 | IteM i; | ^ mv cn3dxprt.o cn3dxprt.glo mv cn3dxprt.tmp cn3dxprt.o mv cn3dwin.o cn3dwin.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dwin.c:647: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces] 733 | { | ^ 734 | 255, 255, 255, /* default 0 */ | { } 735 | 255, 20, 147, /* hotpink 1 */ | { } 736 | 255, 0, 255, /* magenta 2 */ | { } 737 | 155, 48, 255, /* purple 3 */ | { } 738 | 0, 0, 255, /* blue 4 */ | { } 739 | 30, 144, 255, /* sky 5 */ | { } 740 | 0, 255, 255, /* cyan 6 */ | { } 741 | 0, 255, 127, /* sea 7 */ | { } 742 | 0, 255, 0, /* green 8 */ | { } 743 | 255, 255, 0, /* yellow 9 */ | { } 744 | 255, 165, 0, /* gold 10 */ | { } 745 | 255, 69, 0, /* orange 11 */ | { } 746 | 255, 0, 0, /* red 12 */ | { } 747 | 255, 114, 86, /* pink 13 */ | { } 748 | 255, 174, 185, /* pinktint 14 */ | { } 749 | 255, 255, 255, /* white 15 */ | { } 750 | 0, 0, 0, /* black 16 */ | { } 751 | 176, 226, 255, /* bluetint 17 */ | { } 752 | 154, 255, 154, /* greentint 18 */ | { } 753 | 255, 236, 139, /* yellowtint 19 */ | { } 754 | 125, 125, 125, /* gray 20 */ | { } 755 | 139, 87, 66, /* brown 21 */ | { } 756 | 255, 0, 0, /* perm colors 22: red */ | { } 757 | 0, 255, 0, /* perm colors 23: green */ | { } 758 | 255, 0, 255, /* perm colors 24: magenta */ | { } 759 | 30, 144, 255, /* perm colors 25: sky */ | { } 760 | 155, 48, 255, /* perm colors 26: purple */ | { } 761 | 0, 255, 0, /* SS colors 27: helix, green */ | { } 762 | 255, 165, 0, /* SS colors 28: strand, gold */ | { } 763 | 255, 69, 0, /* SS colors 29: turn, orange */ | { } 764 | 0, 255, 255, /* SS colors 30: coil, cyan */ | { } 765 | 255, 255, 0, /* highlight colors 31: yellow */ | { } 766 | 0, 0, 0, /* background colors 32: black */ | { } 767 | 160, 82, 45, /* sienna 33 */ | { } 768 | 240, 230, 140, /* khaki 34 */ | { } 769 | 171, 130, 255, /* light purple 35 */ | { } 770 | 255, 200, 0, /* orange yellow 36 */ | { } 771 | 117, 128, 160, /* 37 */ | { } 772 | 5, 53, 239, /* 38 */ | { } 773 | 27, 62, 255, /* 39 */ | { } 774 | 84, 110, 203, /* 40 */ | { } 775 | 216, 77, 84, /* 41 */ | { } 776 | 125, 128, 135, /* 42 */ | { } 777 | 237, 29, 61, /* 43 */ | { } 778 | 184, 118, 120, /* 44 */ | { } 779 | 155, 9, 0, /* 45 */ | { } 780 | 155, 119, 107, /* 46 */ | { } 781 | 80, 110, 196, /* 47 */ | { } 782 | 122, 127, 157, /* 48 */ | { } 783 | 50, 85, 241, /* 49 */ | { } 784 | 201, 93, 91, /* 50 */ | { } 785 | 254, 0, 5, /* 51 */ | { } 786 | 155, 137, 133, /* 52 */ | { } 787 | 3, 53, 246 /* 53 */ | { 788 | }; | } cn3dwin.c: In function ‘Cn3D_Default_HLColor’: cn3dwin.c:982:27: warning: variable ‘colorB’ set but not used [-Wunused-but-set-variable] 982 | Uint1 colorR, colorG, colorB; | ^~~~~~ cn3dwin.c:982:19: warning: variable ‘colorG’ set but not used [-Wunused-but-set-variable] 982 | Uint1 colorR, colorG, colorB; | ^~~~~~ cn3dwin.c:982:11: warning: variable ‘colorR’ set but not used [-Wunused-but-set-variable] 982 | Uint1 colorR, colorG, colorB; | ^~~~~~ cn3dwin.c: In function ‘Cn3D_RedrawEx’: cn3dwin.c:1251:19: warning: unused variable ‘iColor’ [-Wunused-variable] 1251 | DDV_ColorCell iColor; | ^~~~~~ cn3dwin.c: In function ‘fnPreCHLresidue’: cn3dwin.c:1543:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 1543 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dwin.c: In function ‘Viewer3DGroups’: cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable] 1728 | Int2 groups = 0; | ^~~~~~ cn3dwin.c: In function ‘Cn3D_AlignEdit’: cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable] 1936 | Int2 iCount = 0; | ^~~~~~ cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable] 1935 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable] 1933 | SeqAlignPtr salp = NULL; | ^~~~ cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable] 1931 | PMSD pmsdMaster = NULL, pmsdSlave = NULL; | ^~~~~~~~~ cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable] 1930 | PDNMS pdnmsSlave = NULL; | ^~~~~~~~~~ cn3dwin.c: In function ‘Cn3DWin’: cn3dwin.c:2364:5: warning: implicit declaration of function ‘Nlm_SetOGLContext’; did you mean ‘Nlm_InitAppContext’? [-Wimplicit-function-declaration] 2364 | Nlm_SetOGLContext(NULL, NULL, NULL, NULL); | ^~~~~~~~~~~~~~~~~ | Nlm_InitAppContext In file included from ../include/sqnutils.h:51, from ../include/udviewer.h:219, from cn3dwin.c:665: cn3dwin.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/udviewer.h:228, from cn3dwin.c:665: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function] 1626 | static void HLmolecule_MA(MAPtr ma, | ^~~~~~~~~~~~~ cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function] 1428 | static void HLatom_MA(MAPtr ma, | ^~~~~~~~~ cn3dwin.c:1349:25: warning: ‘DoHighlightSeg’ defined but not used [-Wunused-function] 1349 | static void LIBCALLBACK DoHighlightSeg(PFB pfbThis, | ^~~~~~~~~~~~~~ cn3dwin.c:979:13: warning: ‘Cn3D_Default_HLColor’ defined but not used [-Wunused-function] 979 | static void Cn3D_Default_HLColor(IteM i) | ^~~~~~~~~~~~~~~~~~~~ cn3dwin.c:953:13: warning: ‘Cn3D_BgColor’ defined but not used [-Wunused-function] 953 | static void Cn3D_BgColor(IteM i) | ^~~~~~~~~~~~ cn3dwin.c:936:13: warning: ‘Cn3D_Default_BgColor’ defined but not used [-Wunused-function] 936 | static void Cn3D_Default_BgColor(IteM i) | ^~~~~~~~~~~~~~~~~~~~ cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function] 929 | static void Cn3D_MoveCB(IteM i) | ^~~~~~~~~~~ cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function] 922 | static void Cn3D_ZoomCB(IteM i) | ^~~~~~~~~~~ cn3dwin.c:719:14: warning: ‘Cn3D_gViewCtrl’ defined but not used [-Wunused-variable] 719 | static GrouP Cn3D_gViewCtrl; | ^~~~~~~~~~~~~~ cn3dwin.c:713:14: warning: ‘Cn3D_gViewer’ defined but not used [-Wunused-variable] 713 | static GrouP Cn3D_gViewer; | ^~~~~~~~~~~~ cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable] 688 | static IteM Cn3D_iModelCtrl = NULL; | ^~~~~~~~~~~~~~~ cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable] 682 | static IteM Cn3D_iLabelCtrl = NULL; | ^~~~~~~~~~~~~~~ cn3dwin.c:676:14: warning: ‘Cn3D_Vy’ defined but not used [-Wunused-variable] 676 | static Uint2 Cn3D_Vy, Cn3D_Rx; | ^~~~~~~ mv cn3dwin.o cn3dwin.glo mv cn3dwin.tmp cn3dwin.o mv cn3dentr.o cn3dentr.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/cn3dmain.h:182, from cn3dentr.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv cn3dentr.o cn3dentr.glo mv cn3dentr.tmp cn3dentr.o mv cn3dmsg.o cn3dmsg.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmsg.c:254: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’: cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable] 593 | OMUserDataPtr omudp = NULL; | ^~~~~ In file included from ../include/sqnutils.h:51, from cn3dmsg.c:267: cn3dmsg.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dmsg.c:271: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv cn3dmsg.o cn3dmsg.glo mv cn3dmsg.tmp cn3dmsg.o mv cn3dmatn.o cn3dmatn.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmatn.c:173: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmatn.c: In function ‘FindMM’: cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable] 217 | PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL; | ^~~~~~~~~~~~~~ cn3dmatn.c: In function ‘DoMediaHL’: cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable] 249 | Byte MainAtom = 0; | ^~~~~~~~ cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable] 247 | PALD paldThis = NULL; | ^~~~~~~~ cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable] 246 | PVNAL pvnalThis = NULL; | ^~~~~~~~~ cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable] 245 | PMAD pmadThis = NULL; | ^~~~~~~~ cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable] 244 | PVNMA pvnmaThis = NULL; | ^~~~~~~~~ cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’: cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 372 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 371 | PMMD pmmdThis = NULL; | ^~~~~~~~ mv cn3dmatn.o cn3dmatn.glo mv cn3dmatn.tmp cn3dmatn.o mv cn3dmodl.o cn3dmodl.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’: cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable] 353 | PDNMG pdnmgThis = NULL; | ^~~~~~~~~ cn3dmodl.c: In function ‘Cn3DCheckHighlighted’: cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable] 364 | PMSD pmsdMaster = NULL, pmsdSlave = NULL; | ^~~~~~~~~ cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’: cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable] 508 | PMGD pmgd = NULL; | ^~~~ cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable] 507 | PDNMG pdnmg = NULL; | ^~~~~ cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 506 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘fnAlignList’: cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable] 996 | Uint2 entityID = 0, itemtype = 0; | ^~~~~~~~ cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable] 996 | Uint2 entityID = 0, itemtype = 0; | ^~~~~~~~ cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable] 995 | SeqIdPtr sipThis = NULL; | ^~~~~~~ cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 993 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’: cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable] 1065 | PDNMG pdnmg = NULL; | ^~~~~ cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 1064 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘SetResidueVisibilities’: cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable] 1201 | PVNMO pvnmoThis = NULL; | ^~~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dmodl.c:319: cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dmodl.c:323: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dmodl.c: In function ‘Cn3D_ListDomainProc’: cn3dmodl.c:413:34: warning: ‘ ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=] 413 | sprintf(MolName, "%4s %2s %2d", | ^~ cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767] 413 | sprintf(MolName, "%4s %2s %2d", | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmodl.c:410:34: warning: ‘ ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=] 410 | sprintf(MolName, "%4s %2s", domaindata[iCount]->pcPDBName, | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv cn3dmodl.o cn3dmodl.glo mv cn3dmodl.tmp cn3dmodl.o mv cn3dshim.o cn3dshim.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/cn3dmain.h:182, from cn3dshim.c:131: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dshim.c: In function ‘Cn3D_Size’: cn3dshim.c:413:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 413 | PMSD pmsdThis; | ^~~~~~~~ cn3dshim.c:412:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable] 412 | PDNMS pdnmsSlave; | ^~~~~~~~~~ cn3dshim.c: In function ‘Cn3D_SizeCB’: cn3dshim.c:399:36: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations] 399 | BoundBox->x[i + 1]) BoundBox->x[i + 1] = | ~~~~~~~~~~~^~~~~~~ cn3dshim.c:395:17: note: within this loop 395 | for (i = 0; i < 6; i += 2) { /* check to see if the atom lies outside the bound box */ | ^~~ cn3dshim.c:391:36: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations] 391 | BoundBox->x[i] = pflvDataThis[i / (int) 2]; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dshim.c:390:17: note: within this loop 390 | for (i = 0; i < 6; i++) { | ^~~ mv cn3dshim.o cn3dshim.glo mv cn3dshim.tmp cn3dshim.o mv cn3dmesh.o cn3dmesh.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmesh.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’: cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 103 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dmesh.c: In function ‘Cn3D_OpenMesh’: cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 151 | ButtoN b; | ^ cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’: cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 111 | fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | &(Mesh.NumTri)); | ~~~~~~~~~~~~~~~ cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 | &(Mesh.Vertices[i].Vertex[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 | &(Mesh.Vertices[i].Vertex[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 | &(Mesh.Vertices[i].Vertex[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 | &(Mesh.Vertices[i].Normal[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | &(Mesh.Vertices[i].Normal[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | &lDummy, &lDummy, &lDummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | &lDummy); | ~~~~~~~~ mv cn3dmesh.o cn3dmesh.glo mv cn3dmesh.tmp cn3dmesh.o mv cn3dstyl.o cn3dstyl.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dstyl.c:72: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’: cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable] 459 | SpecialFeatureInfoPtr sfipThis = NULL; | ^~~~~~~~ cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’: cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable] 641 | PARS parsThis = NULL; | ^~~~~~~~ cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 640 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’: cn3dstyl.c:867:16: warning: unused variable ‘TopOn’ [-Wunused-variable] 867 | FALSE, TopOn = FALSE; | ^~~~~ cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable] 866 | Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn = | ^~~~~ cn3dstyl.c:864:17: warning: unused variable ‘k’ [-Wunused-variable] 864 | Int2 i = 0, k = 0, nameval = 0; | ^ cn3dstyl.c: In function ‘ModelSetLabelCtrls’: cn3dstyl.c:1059:37: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 1059 | Int2 i = 0, val = 0, style = 0, size = 0; | ^~~~ cn3dstyl.c: In function ‘lFeatureEditedAction’: cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable] 1136 | Int4 val = 0; | ^~~ cn3dstyl.c: In function ‘bFeatureMoveAction’: cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 1153 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘bFeatureEditAction’: cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 1176 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘ModelControls’: cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable] 1364 | PrompT ppt12, ppt13, ppt14; | ^~~~~ cn3dstyl.c:1363:9: warning: unused variable ‘ppt11’ [-Wunused-variable] 1363 | ppt11; | ^~~~~ cn3dstyl.c:1362:60: warning: unused variable ‘ppt9’ [-Wunused-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’: cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable] 1728 | Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound = | ^~~~~~~~~~~~~~ cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable] 1725 | Int2 iMol = 0, iMolCurrent = 0; | ^~~~~~~~~~~ cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’: cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable] 2122 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = | ^~~~~~~~~~ cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable] 2122 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = | ^~~~~~~~~~ cn3dstyl.c: In function ‘GetUserDefinedFeature’: cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable] 2196 | SpecialFeatureInfoPtr sfipThis = NULL; | ^~~~~~~~ cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’: cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable] 2551 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 2549 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable] 2548 | PDNMM pdnmmHead = NULL; | ^~~~~~~~~ cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 2547 | PMSD pmsdThis = NULL; | ^~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dstyl.c:89: cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function] 456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable] 149 | static ButtoN bResetFeatureTitle; | ^~~~~~~~~~~~~~~~~~ cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable] 144 | static PopuP Cn3D_pupModelStyleItem; | ^~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c: In function ‘CopyLocation’: cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized] 496 | rspNew->data.ptrvalue = (VoidPtr) rsipNewHead; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ mv cn3dstyl.o cn3dstyl.glo mv cn3dstyl.tmp cn3dstyl.o mv seqcons.o seqcons.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from seqcons.c:112: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from seqcons.c:115: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/alignmgr2.h:111, from ../include/actutils.h:105, from seqcons.c:116: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=] 263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] = | ^~~~~~~~~~~~~~~~~~ seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’: seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized] 402 | scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore); | ~~~~~~~~~~^~~~~~~~~~~ seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized] 402 | scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore); | ~~~~~~~~~~^~~~~~~~~~~ mv seqcons.o seqcons.glo mv seqcons.tmp seqcons.o rm -f libncbicn3dOGL.a ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbicn3dOGL.a ../lib ranlib ../lib/libncbicn3dOGL.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_engine.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_extend.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_filter.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hits.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_itree.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_lookup.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seg.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_sw.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_setup.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_stat.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_traceback.c blast_traceback.c: In function ‘BLAST_ComputeTraceback_MT’: blast_traceback.c:1500: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1500 | #pragma omp parallel for default(none) num_threads(actual_num_threads) schedule(guided) if (actual_num_threads > 1) \ | blast_traceback.c:1524: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1524 | #pragma omp critical(retval) | blast_traceback.c:1530: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 1530 | #pragma omp flush(has_been_interrupted) | blast_traceback.c:1561: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1561 | #pragma omp critical(tback_gen_code) | blast_traceback.c:1591: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1591 | #pragma omp critical(retval) | blast_traceback.c:1631: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1631 | #pragma omp critical(tback_gen_code) | arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_util.c blast_util.c: In function ‘BlastProgram2Number’: blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 306 | else if (strcasecmp("mapper", program) == 0) | ^~ blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 309 | return 0; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gapinfo.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF greedy_align.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF link_hsps.c link_hsps.c: In function ‘s_FwdCompareHSPs’: link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 133 | else if (h1->context > h2->context) | ^~ link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 136 | if (h1->query.offset < h2->query.offset) | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF na_ungapped.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_math.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_std.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pattern.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_extend.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_lookup.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_util.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_encoding.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_kappa.c blast_kappa.c: In function ‘Blast_RedoAlignmentCore_MT’: blast_kappa.c:3407: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 3407 | #pragma omp parallel \ | blast_kappa.c:3426: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 3426 | #pragma omp for schedule(static) | blast_kappa.c:3428: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3428 | #pragma omp flush(interrupt) | blast_kappa.c:3489: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3489 | #pragma omp critical(intrpt) | blast_kappa.c:3491: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3491 | #pragma omp flush(interrupt) | blast_kappa.c:3504: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3504 | #pragma omp critical(intrpt) | blast_kappa.c:3506: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3506 | #pragma omp flush(interrupt) | blast_kappa.c:3722: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3722 | #pragma omp critical(intrpt) | blast_kappa.c:3724: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3724 | #pragma omp flush(interrupt) | blast_kappa.c:3730: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 3730 | #pragma omp barrier | arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_parameters.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_posit.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_program.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_query_info.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tune.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c blast_nalookup.c: In function ‘s_NaHashLookupScanSubjectForWordCounts’: blast_nalookup.c:1850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1850 | #pragma omp parallel for if (num_threads > 1) num_threads(num_threads) \ | blast_nalookup.c:1858: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1858 | #pragma omp critical (get_sequence_for_word_counts) | arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aascan.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nascan.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF split_query.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF index_ungapped.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hspstream_mt_utils.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_traceback_mt_priv.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF boost_erf.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jumper.c rm -f libblast.a ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o blast_hspstream_mt_utils.o blast_traceback_mt_priv.o boost_erf.o jumper.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libblast.a ../lib ranlib ../lib/libblast.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_api.c: In function ‘s_BlastRPSInfoInit’: blast_api.c:149:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fscanf(auxfile, "%s", buffer); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:151:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | fscanf(auxfile, "%d", &info->aux_info.gap_open_penalty); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:152:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 152 | fscanf(auxfile, "%d", &info->aux_info.gap_extend_penalty); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:153:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fscanf(auxfile, "%le", &info->aux_info.ungapped_k); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:154:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fscanf(auxfile, "%le", &info->aux_info.ungapped_h); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:155:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fscanf(auxfile, "%d", &info->aux_info.max_db_seq_length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:156:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | fscanf(auxfile, "%d", &info->aux_info.db_length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:157:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 157 | fscanf(auxfile, "%lf", &info->aux_info.scale_factor); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:161:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fscanf(auxfile, "%d", &seq_size); /* not used */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:162:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fscanf(auxfile, "%le", &info->aux_info.karlin_k[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c: In function ‘s_BlastFindMatrixPath’: blast_api.c:502:39: warning: ‘%s’ directive writing up to 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 502 | sprintf(buf_full, "%s%s%s%s", buf_path, | ^~ 503 | alphabet_type, DIRDELIMSTR, matrix_name); | ~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4099) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:484:35: warning: ‘data’ directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] 484 | sprintf(buf_path_2, "%s%sdata%s", buf_path, DIRDELIMSTR, DIRDELIMSTR); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:470:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 470 | sprintf(buf_path_2, "%s%s", buf_path, DIRDELIMSTR); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4097 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c: In function ‘s_BlastRPSInfoInit’: blast_api.c:104:25: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 104 | sprintf(filename, "%s.loo", (char *)pathname); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:123:25: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 123 | sprintf(filename, "%s.rps", (char *)pathname); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:144:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 144 | sprintf(filename, "%s.aux", (char *)pathname); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_input.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from blast_input.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_input.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: blast_input.c,v 1.32 2008/06/09 17:28:41 madden Exp $"; | ^~~~~ blast_input.c: In function ‘BLAST_GetQuerySeqLoc’: blast_input.c:98:21: warning: ‘%ld’ directive writing between 1 and 7 bytes into a region of size 4 [-Wformat-overflow=] 98 | sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES)); | ^~~ blast_input.c:98:20: note: directive argument in the range [-131080, 131080] 98 | sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES)); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from blast_input.c:34: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 8 bytes into a destination of size 4 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_format.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_format.h:45, from blast_format.c:38: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_format.c: In function ‘s_MBXmlInit’: blast_format.c:255:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 255 | Boolean retval = FALSE; | ^~~~~~ blast_format.c: In function ‘s_LoadMatrix’: blast_format.c:673:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] 673 | ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j]; | ~~~~~~^~~ blast_format.c:673:38: warning: array subscript has type ‘char’ [-Wchar-subscripts] 673 | ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j]; | ~~~~~~^~~ At top level: blast_format.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 35 | static char const rcsid[] = "$Id: blast_format.c,v 1.120 2012/10/10 14:07:01 fongah2 Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/ncbithr.h:87, from blast_mtlock.c:39: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_mtlock.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 35 | static char const rcsid[] = | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options_api.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_prelim.c blast_prelim.c: In function ‘Blast_PrelimSearchThreadRun’: blast_prelim.c:100:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 100 | Int2 status = 0; | ^~~~~~ At top level: blast_prelim.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 34 | static char const rcsid[] = "$Id: blast_prelim.c,v 1.8 2006/05/24 21:17:50 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_returns.c blast_returns.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 32 | static char const rcsid[] = "$Id: blast_returns.c,v 1.39 2010/06/10 13:44:46 madden Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from blast_seq.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_seq.c: In function ‘s_SeqLocFillSequenceBuffer’: blast_seq.c:529:10: warning: variable ‘seq_code’ set but not used [-Wunused-but-set-variable] 529 | Uint1 seq_code, strand; | ^~~~~~~~ At top level: blast_seq.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: blast_seq.c,v 1.89 2008/06/09 17:29:14 madden Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/readdb.h:757, from ../include/algo/blast/api/blast_seqalign.h:42, from blast_seqalign.c:35: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_seqalign.c: In function ‘s_HSPListToSeqAlignUngapped’: blast_seqalign.c:343:26: warning: variable ‘hspset_cnt_old’ set but not used [-Wunused-but-set-variable] 343 | Int4 hsp_cnt, index2, hspset_cnt_old; | ^~~~~~~~~~~~~~ At top level: blast_seqalign.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 32 | static char const rcsid[] = "$Id: blast_seqalign.c,v 1.64 2010/02/12 20:54:54 maning Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tabular.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from blast_tabular.c:35: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_tabular.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 32 | static char const rcsid[] = "$Id: blast_tabular.c,v 1.41 2009/06/01 14:33:38 maning Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF repeats_filter.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from ../include/algo/blast/api/repeats_filter.h:41, from repeats_filter.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ repeats_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: repeats_filter.c,v 1.19 2007/12/19 21:56:48 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c seqsrc_multiseq.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 33 | static char const rcsid[] = "$Id: seqsrc_multiseq.c,v 1.28 2011/05/26 20:59:45 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/readdb.h:757, from ../include/algo/blast/api/seqsrc_readdb.h:38, from seqsrc_readdb.c:35: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqsrc_readdb.c: In function ‘s_ReaddbGetNextChunk’: seqsrc_readdb.c:375:11: warning: variable ‘real_readdb_entries’ set but not used [-Wunused-but-set-variable] 375 | Uint4 real_readdb_entries; | ^~~~~~~~~~~~~~~~~~~ At top level: seqsrc_readdb.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 32 | static char const rcsid[] = "$Id: seqsrc_readdb.c,v 1.60 2011/05/26 20:59:45 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF twoseq_api.c twoseq_api.c: In function ‘s_TwoSeqBasicFillOptions’: twoseq_api.c:100:10: warning: unused variable ‘status’ [-Wunused-variable] 100 | Int2 status = 0; | ^~~~~~ In file included from ../include/sqnutils.h:51, from ../include/algo/blast/api/twoseq_api.h:41, from twoseq_api.c:45: twoseq_api.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dust_filter.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from ../include/algo/blast/api/dust_filter.h:41, from dust_filter.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dust_filter.c: In function ‘s_GetFilteringLocations’: dust_filter.c:171:32: warning: unused variable ‘filter_slp_rev’ [-Wunused-variable] 171 | BlastSeqLoc* filter_slp_rev = NULL; | ^~~~~~~~~~~~~~ At top level: dust_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: dust_filter.c,v 1.12 2007/12/19 22:05:56 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message_api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from blast_message_api.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/ncbithr.h:87, from hspfilter_queue.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ hspfilter_queue.c: In function ‘s_BlastHSPQueueInit’: hspfilter_queue.c:65:24: warning: unused variable ‘q_data’ [-Wunused-variable] 65 | BlastHSPQueueData * q_data = data; | ^~~~~~ hspfilter_queue.c: In function ‘s_BlastHSPQueueNew’: hspfilter_queue.c:157:24: warning: assignment to ‘BlastHSPWriterInitFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ [-Wincompatible-pointer-types] 157 | writer->InitFnPtr = &s_BlastHSPQueueInit; | ^ hspfilter_queue.c:158:24: warning: assignment to ‘BlastHSPWriterFinalFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ [-Wincompatible-pointer-types] 158 | writer->FinalFnPtr = &s_BlastHSPQueueFinal; | ^ hspfilter_queue.c: In function ‘BlastHSPQueueInfoNew’: hspfilter_queue.c:189:26: warning: assignment to ‘BlastHSPWriterNewFn’ {aka ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *, BLAST_SequenceBlk *)’} from incompatible pointer type ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *)’ [-Wincompatible-pointer-types] 189 | writer_info->NewFnPtr = &s_BlastHSPQueueNew; | ^ At top level: hspfilter_queue.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 36 | static char const rcsid[] = | ^~~~~ rm -f libblastapi.a ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libblastapi.a ../lib ranlib ../lib/libblastapi.a arm-linux-gnueabihf-gcc -o asntool -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -DWIN_MOTIF -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asntool.c:64: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asncode.c:52: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asncode.c: In function ‘AsnCodeGenEnumDefines’: asncode.c:736:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 736 | sprintf (iter->buf, "%s %d\n", AsnCodeCleanName (avtp->name, lclbuf, | ~^ | | | int | %lld 737 | CLEAN_FOR_SLOT, iter -> acip -> maxDefineLength), avtp->intvalue); | ~~~~~~~~~~~~~~ | | | Nlm_Int8 {aka long long int} asncode.c: In function ‘AsnCode_SETOF_base_or_user’: asncode.c:1518:20: warning: variable ‘real_type’ set but not used [-Wunused-but-set-variable] 1518 | Int2 real_type; | ^~~~~~~~~ asncode.c:1517:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable] 1517 | CharPtr valslot; | ^~~~~~~ asncode.c: In function ‘userobj_and_basetype_SETOF’: asncode.c:2472:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable] 2472 | CharPtr valslot; | ^~~~~~~ asncode.c: In function ‘AsnCodeIsReallyChoice’: asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 3201 | if (now_atp) | ^ asncode.c: In function ‘AsnCodeFunctionWriteFuncChoiceStart’: asncode.c:3623:20: warning: variable ‘obj_use’ set but not used [-Wunused-but-set-variable] 3623 | CharPtr obj_use = which_node->obj_name; | ^~~~~~~ asncode.c: In function ‘AsnCodeIter’: asncode.c:4238:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 4238 | if (iter->atp != NULL) | ^ asncode.c: In function ‘AsnCode’: asncode.c:4317:48: warning: variable ‘objnamety’ set but not used [-Wunused-but-set-variable] 4317 | CharPtr objnameuc = NULL, objnamemc = NULL, objnamety = NULL; | ^~~~~~~~~ At top level: asncode.c:291:17: warning: ‘defbyte’ defined but not used [-Wunused-variable] 291 | static CharPtr defbyte = "ASNCODE_BYTEVAL_SLOT"; | ^~~~~~~ asncode.c:290:17: warning: ‘defbool’ defined but not used [-Wunused-variable] 290 | static CharPtr defbool = "ASNCODE_BOOLVAL_SLOT"; | ^~~~~~~ asncode.c:289:17: warning: ‘defreal’ defined but not used [-Wunused-variable] 289 | static CharPtr defreal = "ASNCODE_REALVAL_SLOT"; | ^~~~~~~ asncode.c:288:17: warning: ‘defbigint’ defined but not used [-Wunused-variable] 288 | static CharPtr defbigint = "ASNCODE_BIGINTVAL_SLOT"; | ^~~~~~~~~ asncode.c:286:17: warning: ‘defptr’ defined but not used [-Wunused-variable] 286 | static CharPtr defptr = "ASNCODE_PTRVAL_SLOT"; | ^~~~~~ /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ../lib/libncbi.a(ncbifile.o): in function `Nlm_TmpNam': ./build/ncbifile.c:1211: warning: the use of `tempnam' is dangerous, better use `mkstemp' cp -p asntool ../bin make[2]: Leaving directory '/<>/build' /usr/bin/make -C build -f makenet.unx LCL=lnx CC="arm-linux-gnueabihf-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC" \ LDFLAGS="-Wl,-z,relro -Wl,-z,now" \ NETENTREZVERSION="2.02c2ASN1SPEC6" \ BLIB31=libvibnet.a OGLLIBS="-lGLU -lGL -lpng " all libncbimla.a libnetblast.a libncbitxc2.a libncbiid1.a shlib make[2]: Entering directory '/<>/build' ./ln-if-absent ../connect/test/*.c . ./ln-if-absent ../network/entrez/client/*.h ../include ./ln-if-absent ../network/entrez/client/*.c . ./ln-if-absent ../network/medarch/client/*.h ../include ./ln-if-absent ../network/medarch/client/*.c . ./ln-if-absent ../network/taxonomy/client/*.h ../include set: No match. make[2]: [makenet.unx:480: copy] Error 1 (ignored) ./ln-if-absent ../network/taxonomy/client/*.c . set: No match. make[2]: [makenet.unx:481: copy] Error 1 (ignored) ./ln-if-absent ../network/taxon1/common/*.h ../include ./ln-if-absent ../network/taxon1/common/*.c . ./ln-if-absent ../network/taxon1/taxon2/*.h ../include ./ln-if-absent ../network/taxon1/taxon2/*.c . ./ln-if-absent ../network/id0arch/client/*.h ../include set: No match. make[2]: [makenet.unx:486: copy] Error 1 (ignored) ./ln-if-absent ../network/id0arch/client/*.c . set: No match. make[2]: [makenet.unx:487: copy] Error 1 (ignored) ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id1arch/*.c . ./ln-if-absent ../network/id2arch/*.h ../include ./ln-if-absent ../network/id2arch/*.c . ./ln-if-absent ../network/spell/client/*.h ../include ./ln-if-absent ../network/spell/client/*.c . ./ln-if-absent ../network/suggest/client/*.h ../include ./ln-if-absent ../network/suggest/client/*.c . ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/blast3/client/*.c . ./ln-if-absent ../tools/taxblast.h ../include ./ln-if-absent ../tools/taxblast.c . ./ln-if-absent /*.c . set: No match. make[2]: [makenet.unx:500: copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.c . set: No match. make[2]: [makenet.unx:501: copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.h ../include set: No match. make[2]: [makenet.unx:502: copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.c . set: No match. make[2]: [makenet.unx:503: copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. make[2]: [makenet.unx:504: copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. make[2]: [makenet.unx:505: copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. make[2]: [makenet.unx:506: copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. make[2]: [makenet.unx:507: copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. make[2]: [makenet.unx:508: copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. make[2]: [makenet.unx:509: copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. make[2]: [makenet.unx:510: copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. make[2]: [makenet.unx:511: copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. make[2]: [makenet.unx:512: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. make[2]: [makenet.unx:513: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. make[2]: [makenet.unx:514: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. make[2]: [makenet.unx:515: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. make[2]: [makenet.unx:516: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. make[2]: [makenet.unx:517: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. make[2]: [makenet.unx:518: copy] Error 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/cspeedtest.c . ./ln-if-absent ../demo/sqn2agp.c . ./ln-if-absent ../demo/sugint.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnbarval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asnmacro.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/raw2delt.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/xlint.c . ./ln-if-absent ../demo/diffshift.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/src_chk.c . ./ln-if-absent ../demo/tbl_chk.c . ./ln-if-absent ../demo/export_cmt.c . ./ln-if-absent ../internal/parser/flat2asn.c . make[2]: [makenet.unx:577: copy] Error 1 (ignored) ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. make[2]: [makenet.unx:579: copy] Error 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . echo Waiting...go Waiting...go arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from ni_lib_.c:76: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ni_debug.c:55: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ni_service.c:125: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ni_service.c: In function ‘s_GenericGetService’: ni_service.c:201:19: warning: unused variable ‘c’ [-Wunused-variable] 201 | CONNECTOR c; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from ../include/ni_error.h:76, from ni_error.c:72: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from netentr.c:161: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netentr.c: In function ‘s_NetEntTLEvalCount’: netentr.c:798:5: warning: "/*" within comment [-Wcomment] 798 | /*MsgSetReadTimeout(Entrez_ni, 60);*/ | netentr.c: In function ‘s_NetDocSumListGet’: netentr.c:856:18: warning: variable ‘amp’ set but not used [-Wunused-but-set-variable] 856 | AsnModulePtr amp; | ^~~ netentr.c: In function ‘s_NetTermListByTerm’: netentr.c:1212:9: warning: variable ‘terms_to_read’ set but not used [-Wunused-but-set-variable] 1212 | int terms_to_read; | ^~~~~~~~~~~~~ netentr.c:1200:14: warning: unused variable ‘asnout’ [-Wunused-variable] 1200 | AsnIoPtr asnout = Entrez_asnout; | ^~~~~~ netentr.c: In function ‘s_NetTermListByPage’: netentr.c:1343:14: warning: unused variable ‘asnout’ [-Wunused-variable] 1343 | AsnIoPtr asnout = Entrez_asnout; | ^~~~~~ netentr.c: In function ‘NetEntTLEval’: netentr.c:675:12: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 675 | return lsp; | ^~~ netentr.c: In function ‘NetEntTLEvalCount’: netentr.c:800:8: warning: ‘atp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 800 | if (atp == ENTREZ_BACK_eval_count) | ^ netentr.c:782:16: note: ‘atp’ was declared here 782 | AsnTypePtr atp; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from netlib.c:82: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netlib.c: In function ‘BoolExprAsnWrite’: netlib.c:307:16: warning: unused variable ‘n’ [-Wunused-variable] 307 | static int n = 0; | ^ At top level: netlib.c:307:16: warning: ‘n’ defined but not used [-Wunused-variable] netlib.c:96:16: warning: ‘loaded’ defined but not used [-Wunused-variable] 96 | static Boolean loaded = FALSE; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnneten.h:9, from objneten.c:86: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objneten.c: In function ‘NetEntAsnLoad’: objneten.c:106:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 106 | if (loaded) | ^~ objneten.c:108:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 108 | loaded = TRUE; | ^~~~~~ objneten.c: In function ‘EntrezNeighborTextAsnRead’: objneten.c:2938:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2938 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘ChildLinkAsnRead’: objneten.c:3148:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3148 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘EntrezHierarchyAsnRead’: objneten.c:3442:15: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3442 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘EntrezBlastreqAsnRead’: objneten.c:3705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3705 | AsnReadFunc func; | ^~~~ objneten.c:3704:12: warning: unused variable ‘isError’ [-Wunused-variable] 3704 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘EntrezExtraInfoAsnRead’: objneten.c:3911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3911 | AsnReadFunc func; | ^~~~ objneten.c:3910:12: warning: unused variable ‘isError’ [-Wunused-variable] 3910 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘ClusterArticlesAsnRead’: objneten.c:4262:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4262 | AsnReadFunc func; | ^~~~ objneten.c:4261:12: warning: unused variable ‘isError’ [-Wunused-variable] 4261 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘ClusterRespAsnRead’: objneten.c:4455:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4455 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘DateConstraintsAsnRead’: objneten.c:4622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4622 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘DateVectorAsnRead’: objneten.c:4785:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4785 | AsnReadFunc func; | ^~~~ objneten.c:4784:12: warning: unused variable ‘isError’ [-Wunused-variable] 4784 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘GetByFidAsnRead’: objneten.c:4963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4963 | AsnReadFunc func; | ^~~~ objneten.c:4962:12: warning: unused variable ‘isError’ [-Wunused-variable] 4962 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘GetFeatIdsAsnRead’: objneten.c:5133:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5133 | AsnReadFunc func; | ^~~~ objneten.c:5132:12: warning: unused variable ‘isError’ [-Wunused-variable] 5132 | Boolean isError = FALSE; | ^~~~~~~ rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from Naccentr.c:297: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ Naccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces] 357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = { | ^ 358 | 8, 6, 3, 3, | { } 359 | 8, 6, 3, 3, | { } 360 | 8, 6, 3, 3, | { } 361 | 8, 6, 3, 3, | { } 362 | 9, 7, 4, 3, | { } 363 | 9, 8, 5, 3, | { } 364 | 10, 9, 5, 3, | { } 365 | 10, 10, 5, 3, | { } 366 | 11, 10, 5, 3, | { } 367 | 11, 11, 5, 3, | { } 368 | 12, 11, 5, 3, | { } 369 | 12, 11, 5, 3, | { } 370 | 12, 11, 5, 3 | { 371 | }; | } Naccentr.c: In function ‘EntrezDocSumListGet’: Naccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable] 1409 | Int2 actual; | ^~~~~~ Naccentr.c: In function ‘EntrezGIForSeqIdFunc’: Naccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3283 | if (! gi) return OM_MSG_RET_OK; | ^~ Naccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3285 | sip2 = ValNodeNew(NULL); | ^~~~ rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from Caccentr.c:297: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ Caccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces] 357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = { | ^ 358 | 8, 6, 3, 3, | { } 359 | 8, 6, 3, 3, | { } 360 | 8, 6, 3, 3, | { } 361 | 8, 6, 3, 3, | { } 362 | 9, 7, 4, 3, | { } 363 | 9, 8, 5, 3, | { } 364 | 10, 9, 5, 3, | { } 365 | 10, 10, 5, 3, | { } 366 | 11, 10, 5, 3, | { } 367 | 11, 11, 5, 3, | { } 368 | 12, 11, 5, 3, | { } 369 | 12, 11, 5, 3, | { } 370 | 12, 11, 5, 3 | { 371 | }; | } Caccentr.c: In function ‘EntrezDocSumListGet’: Caccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable] 1409 | Int2 actual; | ^~~~~~ Caccentr.c: In function ‘EntrezGIForSeqIdFunc’: Caccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3283 | if (! gi) return OM_MSG_RET_OK; | ^~ Caccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3285 | sip2 = ValNodeNew(NULL); | ^~~~ rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from netcnfg.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netcnfg.c: In function ‘ShowNetConfigForm’: netcnfg.c:319:23: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable] 319 | PrompT ppt0, ppt1; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from trmlst.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ trmlst.c: In function ‘FetchFromTermList’: trmlst.c:1048:16: warning: variable ‘numRead’ set but not used [-Wunused-but-set-variable] 1048 | Int2 numRead; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from docsum.c:252: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ docsum.c: In function ‘ImportDocSumForm’: docsum.c:2298:21: warning: unused variable ‘sephead’ [-Wunused-variable] 2298 | SeqEntryPtr sephead = NULL; | ^~~~~~~ docsum.c:2296:21: warning: unused variable ‘is_na’ [-Wunused-variable] 2296 | Boolean is_na = TRUE; | ^~~~~ docsum.c:2290:21: warning: unused variable ‘choice’ [-Wunused-variable] 2290 | Uint1 choice = 0; | ^~~~~~ docsum.c: In function ‘SaveDocsumProject’: docsum.c:3042:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable] 3042 | SummFormPtr sfp; | ^~~ docsum.c: In function ‘LaunchStructureViewer’: docsum.c:4192:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4192 | system (cmmd); | ^~~~~~~~~~~~~ At top level: docsum.c:439:15: warning: ‘checkmark’ defined but not used [-Wunused-variable] 439 | static Uint1 checkmark [] = { | ^~~~~~~~~ docsum.c: In function ‘SetDefaultFailureMessage’: docsum.c:687:48: warning: ‘ in ’ directive writing 4 bytes into a region of size between 3 and 42 [-Wformat-overflow=] 687 | sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname); | ^~~~ docsum.c:687:21: note: assuming directive output of 3 bytes 687 | sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from docsum.c:252: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 78) into a destination of size 64 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ docsum.c: In function ‘FetchLocalBioseq’: docsum.c:1223:6: warning: ‘str’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1223 | if (str == NULL) return failed; | ^ docsum.c: In function ‘LaunchStructureViewer.constprop’: docsum.c:4191:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=] 4191 | sprintf (cmmd, "Cn3D %s &", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from docsum.c:252: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libvibnet.a ar cru libvibnet.a netcnfg.o trmlst.o docsum.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibnet.a ../lib ranlib ../lib/libvibnet.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmla.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmla.c: In function ‘MlaRequestFree’: objmla.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 49 | Pointer pnt; | ^~~ objmla.c: In function ‘MlaRequestAsnRead’: objmla.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable] 96 | Boolean isError = FALSE; | ^~~~~~~ objmla.c: In function ‘TitleMsgAsnRead’: objmla.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 447 | AsnReadFunc func; | ^~~~ objmla.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable] 446 | Boolean isError = FALSE; | ^~~~~~~ objmla.c: In function ‘TitleMsgListAsnRead’: objmla.c:612:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 612 | AsnReadFunc func; | ^~~~ objmla.c: In function ‘MlaRequestAsnRead’: objmla.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 249 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmla.c: In function ‘MlaBackAsnRead’: objmla.c:902:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 902 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from medarch.c:122: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ medarch.c:758:8: warning: ‘s_MedArchPubSetEntryGetUid’ defined but not used [-Wunused-function] 758 | /*FCN*/s_MedArchPubSetEntryGetUid ( | ^~~~~~~~~~~~~~~~~~~~~~~~~~ medarch.c:710:8: warning: ‘s_MedArchPubSetEntryGetPmId’ defined but not used [-Wunused-function] 710 | /*FCN*/s_MedArchPubSetEntryGetPmId ( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ medarch.c: In function ‘MedArchPubSetCreate’: medarch.c:1693:9: warning: ‘pubSetEAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1693 | MedlineEntryAsnWrite (lastmep, aip, pubSetEAtp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ni_types.h:85, from ../include/ncbinet.h:84, from medarch.c:122: ../include/asn.h:495:27: warning: ‘pubSetAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 495 | #define AsnEndStruct(x,y) AsnCloseStruct(x, y, NULL) | ^~~~~~~~~~~~~~ medarch.c:1625:16: note: ‘pubSetAtp’ was declared here 1625 | AsnTypePtr pubSetAtp; | ^~~~~~~~~ medarch.c:1655:5: warning: ‘startAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1655 | AsnWrite (aip, startAtp, NULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/medutil.h:79, from medutil.c:58: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ medutil.c: In function ‘FixPubEquiv’: medutil.c:1134:16: warning: variable ‘got’ set but not used [-Wunused-but-set-variable] 1134 | Boolean got; | ^~~ rm -f libncbimla.a ar cru libncbimla.a objmla.o medarch.o medutil.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbimla.a ../lib ranlib ../lib/libncbimla.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objblst3.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objblst3.c: In function ‘BlastSearchAsnRead’: objblst3.c:91:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 91 | AsnReadFunc func; | ^~~~ objblst3.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable] 90 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastRequestFree’: objblst3.c:287:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 287 | Pointer pnt; | ^~~ objblst3.c: In function ‘BlastRequestAsnRead’: objblst3.c:337:12: warning: unused variable ‘isError’ [-Wunused-variable] 337 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘Cutoff2_cutoff2Free’: objblst3.c:999:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 999 | Pointer pnt; | ^~~ objblst3.c: In function ‘BlastParametersAsnRead’: objblst3.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1027 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘Cutoff2_cutoff2AsnRead’: objblst3.c:1422:12: warning: unused variable ‘isError’ [-Wunused-variable] 1422 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘Cutoff_cutoffAsnRead’: objblst3.c:1788:12: warning: unused variable ‘isError’ [-Wunused-variable] 1788 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘Cutoff_cutoffFree’: objblst3.c:1871:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1871 | Pointer pnt; | ^~~ objblst3.c: In function ‘BlastMatrixAsnRead’: objblst3.c:1936:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1936 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastDbinfoAsnRead’: objblst3.c:2153:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2153 | AsnReadFunc func; | ^~~~ objblst3.c:2152:12: warning: unused variable ‘isError’ [-Wunused-variable] 2152 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastMaskAsnRead’: objblst3.c:2357:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2357 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastKABlkAsnRead’: objblst3.c:2517:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2517 | AsnReadFunc func; | ^~~~ objblst3.c:2516:12: warning: unused variable ‘isError’ [-Wunused-variable] 2516 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastErrorAsnRead’: objblst3.c:2697:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2697 | AsnReadFunc func; | ^~~~ objblst3.c:2696:12: warning: unused variable ‘isError’ [-Wunused-variable] 2696 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastPhialignAsnRead’: objblst3.c:2861:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2861 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastDbinfoGetAsnRead’: objblst3.c:3022:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3022 | AsnReadFunc func; | ^~~~ objblst3.c:3021:12: warning: unused variable ‘isError’ [-Wunused-variable] 3021 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastSeqIdAsnRead’: objblst3.c:3187:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3187 | AsnReadFunc func; | ^~~~ objblst3.c:3186:12: warning: unused variable ‘isError’ [-Wunused-variable] 3186 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastSequenceAsnRead’: objblst3.c:3364:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3364 | AsnReadFunc func; | ^~~~ objblst3.c:3363:12: warning: unused variable ‘isError’ [-Wunused-variable] 3363 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastPartsAsnRead’: objblst3.c:3532:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3532 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastQueuedAsnRead’: objblst3.c:3694:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3694 | AsnReadFunc func; | ^~~~ objblst3.c:3693:12: warning: unused variable ‘isError’ [-Wunused-variable] 3693 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastProgressAsnRead’: objblst3.c:3846:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3846 | AsnReadFunc func; | ^~~~ objblst3.c:3845:12: warning: unused variable ‘isError’ [-Wunused-variable] 3845 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastDeflineAsnRead’: objblst3.c:4000:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4000 | AsnReadFunc func; | ^~~~ objblst3.c:3999:12: warning: unused variable ‘isError’ [-Wunused-variable] 3999 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastVersionAsnRead’: objblst3.c:4168:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4168 | AsnReadFunc func; | ^~~~ objblst3.c:4167:12: warning: unused variable ‘isError’ [-Wunused-variable] 4167 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘MegaBlastHitAsnRead’: objblst3.c:4335:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4335 | AsnReadFunc func; | ^~~~ objblst3.c:4334:12: warning: unused variable ‘isError’ [-Wunused-variable] 4334 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘MegaBlastResultsAsnRead’: objblst3.c:4546:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4546 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastRequestAsnRead’: objblst3.c:430:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objblst3.c: In function ‘BlastResponseAsnRead’: objblst3.c:791:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 791 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objblst3.c: In function ‘BlastParametersAsnRead’: objblst3.c:1474:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1474 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objblst3.c:1421:10: note: ‘choice’ was declared here 1421 | Uint1 choice; | ^~~~~~ objblst3.c:1840:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1840 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objblst3.c:1787:10: note: ‘choice’ was declared here 1787 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from netblap3.c:359: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netblap3.c: In function ‘BlastNetBioseqFetchFunc’: netblap3.c:1835:16: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable] 1835 | OMUserDataPtr omdp; | ^~~~ netblap3.c: In function ‘MegaBlastSeqLocNetCore’: netblap3.c:2049:8: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 2049 | Uint2 entityID = 0; | ^~~~~~~~ In file included from ../include/netblap3.h:135, from netblap3.c:364: netblap3.c: At top level: ../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function] 180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function] 181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function] 182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function] 199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function] 200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ netblap3.c:452:1: warning: ‘BlastResetOldHook’ defined but not used [-Wunused-function] 452 | BlastResetOldHook(void) | ^~~~~~~~~~~~~~~~~ netblap3.c:445:1: warning: ‘BlastGetErrorStatus’ defined but not used [-Wunused-function] 445 | BlastGetErrorStatus(void) | ^~~~~~~~~~~~~~~~~~~ netblap3.c:438:1: warning: ‘BlastSetErrorStatus’ defined but not used [-Wunused-function] 438 | BlastSetErrorStatus(Boolean status) | ^~~~~~~~~~~~~~~~~~~ netblap3.c:430:1: warning: ‘BlastSetErrorHook’ defined but not used [-Wunused-function] 430 | BlastSetErrorHook(void) | ^~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from netblap3.c:364: ../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable] 229 | static AsnModulePtr amp = ampx; | ^~~ ../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable] 228 | static AsnTypePtr at = atx; | ^~ ../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable] 227 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "blstspc.h23"; | ^~~~~~~~~~~ netblap3.c: In function ‘BlastNetMatrixToBlastMatrix’: netblap3.c:1212:35: warning: ‘index2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1212 | if (index1 != blast_matrix->rows || index2 != blast_matrix->columns) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netblap3.c: In function ‘SubmitRequest’: netblap3.c:1763:18: warning: ‘bllist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1763 | bllist->next = blresp; | ~~~~~~~~~~~~~^~~~~~~~ netblap3.c:1698:19: note: ‘bllist’ was declared here 1698 | BlastResponsePtr bllist, blresp, head; | ^~~~~~ netblap3.c: In function ‘TraditionalBlastReportEngine’: netblap3.c:2570:11: warning: ‘next_seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2570 | while (seqalign) { | ^ rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtax1.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objtax1.c: In function ‘Taxon1ReqFree’: objtax1.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 49 | Pointer pnt; | ^~~ objtax1.c: In function ‘Taxon1ReqAsnRead’: objtax1.c:92:12: warning: unused variable ‘isError’ [-Wunused-variable] 92 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon1InfoAsnRead’: objtax1.c:502:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 502 | AsnReadFunc func; | ^~~~ objtax1.c:501:12: warning: unused variable ‘isError’ [-Wunused-variable] 501 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon1ErrorAsnRead’: objtax1.c:1131:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1131 | AsnReadFunc func; | ^~~~ objtax1.c:1130:12: warning: unused variable ‘isError’ [-Wunused-variable] 1130 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon1NameAsnRead’: objtax1.c:1296:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1296 | AsnReadFunc func; | ^~~~ objtax1.c:1295:12: warning: unused variable ‘isError’ [-Wunused-variable] 1295 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon1DataAsnRead’: objtax1.c:1482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1482 | AsnReadFunc func; | ^~~~ objtax1.c:1481:12: warning: unused variable ‘isError’ [-Wunused-variable] 1481 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon2DataAsnRead’: objtax1.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1670 | AsnReadFunc func; | ^~~~ objtax1.c: In function ‘Taxon1ReqAsnRead’: objtax1.c:284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 284 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtax1.c: In function ‘Taxon1RespAsnRead’: objtax1.c:920:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 920 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/utilpub.h:4, from taxutil.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ taxutil.c: In function ‘taxname_match’: taxutil.c:66:24: warning: unused variable ‘taxstr’ [-Wunused-variable] 66 | CharPtr taxstr = NULL; | ^~~~~~ taxutil.c: In function ‘get_lineage’: taxutil.c:140:28: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 140 | return Nlm_StringSave(onp->lineage); | ~~~^~~~~~~~~ taxutil.c: In function ‘get_gcode’: taxutil.c:160:23: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 160 | gclp->genomic = onp->gcode; | ~~~^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c tc2proc.c: In function ‘getIdByOrgRef’: tc2proc.c:407:17: warning: unused variable ‘om_flag’ [-Wunused-variable] 407 | Boolean om_flag= FALSE; | ^~~~~~~ tc2proc.c: In function ‘bldLineage’: tc2proc.c:1095:10: warning: unused variable ‘rank’ [-Wunused-variable] 1095 | Int2 rank= 0; | ^~~~ tc2proc.c: In function ‘storedTaxId’: tc2proc.c:2114:17: warning: unused variable ‘object_id’ [-Wunused-variable] 2114 | ObjectIdPtr object_id; | ^~~~~~~~~ tc2proc.c: In function ‘tax1e_needUpdate’: tc2proc.c:2181:13: warning: unused variable ‘hit_name’ [-Wunused-variable] 2181 | CharPtr hit_name; | ^~~~~~~~ tc2proc.c:2180:13: warning: unused variable ‘need_search_name’ [-Wunused-variable] 2180 | Boolean need_search_name= TRUE; | ^~~~~~~~~~~~~~~~ tc2proc.c:2179:9: warning: unused variable ‘is_species’ [-Wunused-variable] 2179 | int is_species; | ^~~~~~~~~~ tc2proc.c:2176:19: warning: unused variable ‘res’ [-Wunused-variable] 2176 | Taxon1DataPtr res; | ^~~ At top level: tc2proc.c:403:13: warning: ‘getIdByOrgRef’ defined but not used [-Wunused-function] 403 | static Int4 getIdByOrgRef(CharPtr sname, OrgNamePtr orNm) | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from txcdproc.c:116: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/txclient.h:73, from parttree.c:79: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ parttree.c: In function ‘tax_ptree_addSubtree’: parttree.c:392:13: warning: unused variable ‘need_remove’ [-Wunused-variable] 392 | Boolean need_remove= FALSE; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from taxblast.c:161: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ taxblast.c: In function ‘TXBHtmlReportInternal’: taxblast.c:1359:37: warning: variable ‘linlines’ set but not used [-Wunused-but-set-variable] 1359 | Int2 numtaxa, numorgs, numhits, linlines, longname; | ^~~~~~~~ taxblast.c: In function ‘RDTaxLookupReset’: taxblast.c:2050:1: warning: control reaches end of non-void function [-Wreturn-type] 2050 | } | ^ At top level: taxblast.c:1967:13: warning: ‘getTotalTaxIdCount’ defined but not used [-Wunused-function] 1967 | static Int4 getTotalTaxIdCount(TreeCursorPtr cursor) | ^~~~~~~~~~~~~~~~~~ taxblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: taxblast.c,v 6.31 2015/07/06 19:25:47 madden Exp $"; | ^~~~~ taxblast.c: In function ‘TXBGetTargetGi’: taxblast.c:504:12: warning: ‘gi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 504 | return gi; | ^~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from taxblast.c:161: In function ‘strncpy’, inlined from ‘TXBHtmlReportInternal’ at taxblast.c:1491:17, inlined from ‘TXBHtmlReport’ at taxblast.c:1803:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 128 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libncbitxc2.a ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbitxc2.a ../lib ranlib ../lib/libncbitxc2.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from id1gen.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ id1gen.c: In function ‘ID1serverRequestFree’: id1gen.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 49 | Pointer pnt; | ^~~ id1gen.c: In function ‘ID1serverRequestAsnRead’: id1gen.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable] 90 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1serverMaxcomplexAsnRead’: id1gen.c:348:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 348 | AsnReadFunc func; | ^~~~ id1gen.c:347:12: warning: unused variable ‘isError’ [-Wunused-variable] 347 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1SeqHistAsnRead’: id1gen.c:530:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 530 | AsnReadFunc func; | ^~~~ id1gen.c:529:12: warning: unused variable ‘isError’ [-Wunused-variable] 529 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1SeqEntryInfoAsnRead’: id1gen.c:979:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 979 | AsnReadFunc func; | ^~~~ id1gen.c:978:12: warning: unused variable ‘isError’ [-Wunused-variable] 978 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1blobInfoAsnRead’: id1gen.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1147 | AsnReadFunc func; | ^~~~ id1gen.c:1146:12: warning: unused variable ‘isError’ [-Wunused-variable] 1146 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1serverDebugAsnRead’: id1gen.c:1368:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1368 | AsnReadFunc func; | ^~~~ id1gen.c: In function ‘ID1serverBackAsnRead’: id1gen.c:811:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 811 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ id1gen.c: In function ‘ID1serverRequestAsnRead’: id1gen.c:186:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 186 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from id1arch.c:31: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ id1arch.c: In function ‘ID1ArchSeqEntryGet’: id1arch.c:173:7: warning: unused variable ‘retval’ [-Wunused-variable] 173 | Int4 retval = 0; | ^~~~~~ id1arch.c: In function ‘ID1ArchGIGet’: id1arch.c:486:10: warning: unused variable ‘retval’ [-Wunused-variable] 486 | Int4 retval = 0; | ^~~~~~ id1arch.c: In function ‘SeqHistPrintTable’: id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=] 553 | sprintf(repl_date,"%0.2d/%0.2d/%0.4d", | ^~~~~~~~~~~~~~~~~~~ id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=] id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=] id1arch.c:563:47: warning: spurious trailing ‘%’ in format [-Wformat=] 563 | fprintf(fp,"%-20d%-20s%",old_gi,repl_date); | ^ id1arch.c:558:65: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 558 | sprintf(repl_date,"%-20s",shp->replace_date->str); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from id1arch.c:31: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from accid1.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ accid1.c: In function ‘s_ID1BioseqFetchFunc’: accid1.c:262:9: warning: unused variable ‘retcode’ [-Wunused-variable] 262 | Int2 retcode=0; | ^~~~~~~ rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a mkdir ../shlib rm -f ../shlib/*.a ln ../lib/*.a ../shlib cd ../shlib; make -f ../make/makeshlb.unx `ls *.a | sed "s/\.a/.so.6/"` SH1="arm-linux-gnueabihf-gcc -o" SH2="-shared *.o" make[3]: Entering directory '/<>/shlib' arm-linux-gnueabihf-gcc -shared -Wl,-soname=libblastcompadj.so.6 -o libblastcompadj.so.6.1.20170106 \ -Wl,--whole-archive libblastcompadj.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ -lm arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbi.so.6 -o libncbi.so.6.1.20170106 \ -Wl,--whole-archive libncbi.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ -lm /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: libncbi.a(ncbifile.o): in function `Nlm_TmpNam': ./build/ncbifile.c:1211: warning: the use of `tempnam' is dangerous, better use `mkstemp' arm-linux-gnueabihf-gcc -shared -Wl,-soname=libblast.so.6 -o libblast.so.6.1.20170106 \ -Wl,--whole-archive libblast.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libblastcompadj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm ln -s libblast.so.6.1.20170106 libblast.so.6 ln -s libblast.so.6.1.20170106 libblast.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbiobj.so.6 -o libncbiobj.so.6.1.20170106 \ -Wl,--whole-archive libncbiobj.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbi.so.6.1.20170106 -lm arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbitool.so.6 -o libncbitool.so.6.1.20170106 \ -Wl,--whole-archive libncbitool.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libblastcompadj.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm arm-linux-gnueabihf-gcc -shared -Wl,-soname=libblastapi.so.6 -o libblastapi.so.6.1.20170106 \ -Wl,--whole-archive libblastapi.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libblast.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm ln -s libblastapi.so.6.1.20170106 libblastapi.so.6 ln -s libblastapi.so.6.1.20170106 libblastapi.so ln -s libblastcompadj.so.6.1.20170106 libblastcompadj.so.6 ln -s libblastcompadj.so.6.1.20170106 libblastcompadj.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libconnssl.so.6 -o libconnssl.so.6.1.20170106 \ -Wl,--whole-archive libconnssl.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbi.so.6.1.20170106 -lgnutls ln -s libconnssl.so.6.1.20170106 libconnssl.so.6 ln -s libconnssl.so.6.1.20170106 libconnssl.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libnetcli.so.6 -o libnetcli.so.6.1.20170106 \ -Wl,--whole-archive libnetcli.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbi.so.6.1.20170106 arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbiid1.so.6 -o libncbiid1.so.6.1.20170106 \ -Wl,--whole-archive libncbiid1.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiobj.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbi.so.6.1.20170106 arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbimmdb.so.6 -o libncbimmdb.so.6.1.20170106 \ -Wl,--whole-archive libncbimmdb.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiid1.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm arm-linux-gnueabihf-gcc -shared -Wl,-soname=libvibrantOGL.so.6 -o libvibrantOGL.so.6.1.20170106 \ -Wl,--whole-archive libvibrantOGL.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lGLU -lGL -lpng -lXm -lXmu -lXt -lX11 -lm arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbidesk.so.6 -o libncbidesk.so.6.1.20170106 \ -Wl,--whole-archive libncbidesk.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libblastapi.so.6.1.20170106 libncbimmdb.so.6.1.20170106 libncbitool.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm arm-linux-gnueabihf-gcc -shared -Wl,-soname=libddvlib.so.6 -o libddvlib.so.6.1.20170106 \ -Wl,--whole-archive libddvlib.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbidesk.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 ln -s libddvlib.so.6.1.20170106 libddvlib.so.6 ln -s libddvlib.so.6.1.20170106 libddvlib.so ln -s libncbi.so.6.1.20170106 libncbi.so.6 ln -s libncbi.so.6.1.20170106 libncbi.so ln -s libncbiNacc.so.6.1.20170106 libncbiCacc.so.6.1.20170106 ln -s libncbiCacc.so.6.1.20170106 libncbiCacc.so.6 ln -s libncbiCacc.so.6.1.20170106 libncbiCacc.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbicdr.so.6 -o libncbicdr.so.6.1.20170106 \ -Wl,--whole-archive libncbicdr.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbiNacc.so.6 -o libncbiNacc.so.6.1.20170106 \ -Wl,--whole-archive libncbiNacc.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbicdr.so.6.1.20170106 libnetentr.a libnetcli.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm ln -s libncbiNacc.so.6.1.20170106 libncbiNacc.so.6 ln -s libncbiNacc.so.6.1.20170106 libncbiNacc.so ln -s libncbiNacc.so.6.1.20170106 libncbiacc.so.6.1.20170106 ln -s libncbiacc.so.6.1.20170106 libncbiacc.so.6 ln -s libncbiacc.so.6.1.20170106 libncbiacc.so ln -s libncbicdr.so.6.1.20170106 libncbicdr.so.6 ln -s libncbicdr.so.6.1.20170106 libncbicdr.so ln -s libncbicn3dOGL.so.6.1.20170106 libncbicn3d.so.6.1.20170106 ln -s libncbicn3d.so.6.1.20170106 libncbicn3d.so.6 ln -s libncbicn3d.so.6.1.20170106 libncbicn3d.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbicn3dOGL.so.6 -o libncbicn3dOGL.so.6.1.20170106 \ -Wl,--whole-archive libncbicn3dOGL.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiNacc.so.6.1.20170106 libddvlib.so.6.1.20170106 libncbidesk.so.6.1.20170106 libncbimmdb.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 -lm ln -s libncbicn3dOGL.so.6.1.20170106 libncbicn3dOGL.so.6 ln -s libncbicn3dOGL.so.6.1.20170106 libncbicn3dOGL.so ln -s libncbidesk.so.6.1.20170106 libncbidesk.so.6 ln -s libncbidesk.so.6.1.20170106 libncbidesk.so ln -s libncbiid1.so.6.1.20170106 libncbiid1.so.6 ln -s libncbiid1.so.6.1.20170106 libncbiid1.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbimla.so.6 -o libncbimla.so.6.1.20170106 \ -Wl,--whole-archive libncbimla.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiobj.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbi.so.6.1.20170106 ln -s libncbimla.so.6.1.20170106 libncbimla.so.6 ln -s libncbimla.so.6.1.20170106 libncbimla.so ln -s libncbimmdb.so.6.1.20170106 libncbimmdb.so.6 ln -s libncbimmdb.so.6.1.20170106 libncbimmdb.so ln -s libncbiobj.so.6.1.20170106 libncbiobj.so.6 ln -s libncbiobj.so.6.1.20170106 libncbiobj.so ln -s libncbitool.so.6.1.20170106 libncbitool.so.6 ln -s libncbitool.so.6.1.20170106 libncbitool.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libncbitxc2.so.6 -o libncbitxc2.so.6.1.20170106 \ -Wl,--whole-archive libncbitxc2.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbitool.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm ln -s libncbitxc2.so.6.1.20170106 libncbitxc2.so.6 ln -s libncbitxc2.so.6.1.20170106 libncbitxc2.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libnetblast.so.6 -o libnetblast.so.6.1.20170106 \ -Wl,--whole-archive libnetblast.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbitool.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 ln -s libnetblast.so.6.1.20170106 libnetblast.so.6 ln -s libnetblast.so.6.1.20170106 libnetblast.so ln -s libnetcli.so.6.1.20170106 libnetcli.so.6 ln -s libnetcli.so.6.1.20170106 libnetcli.so ln -s libncbiNacc.so.6.1.20170106 libnetentr.so.6.1.20170106 ln -s libnetentr.so.6.1.20170106 libnetentr.so.6 ln -s libnetentr.so.6.1.20170106 libnetentr.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libvibgif.so.6 -o libvibgif.so.6.1.20170106 \ -Wl,--whole-archive libvibgif.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbi.so.6.1.20170106 -lm ln -s libvibgif.so.6.1.20170106 libvibgif.so.6 ln -s libvibgif.so.6.1.20170106 libvibgif.so arm-linux-gnueabihf-gcc -shared -Wl,-soname=libvibnet.so.6 -o libvibnet.so.6.1.20170106 \ -Wl,--whole-archive libvibnet.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \ libncbiNacc.so.6.1.20170106 libncbidesk.so.6.1.20170106 libncbimmdb.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbicdr.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 ln -s libvibnet.so.6.1.20170106 libvibnet.so.6 ln -s libvibnet.so.6.1.20170106 libvibnet.so ln -s libvibrantOGL.so.6.1.20170106 libvibrant.so.6.1.20170106 ln -s libvibrant.so.6.1.20170106 libvibrant.so.6 ln -s libvibrant.so.6.1.20170106 libvibrant.so ln -s libvibrantOGL.so.6.1.20170106 libvibrantOGL.so.6 ln -s libvibrantOGL.so.6.1.20170106 libvibrantOGL.so make[3]: Leaving directory '/<>/shlib' rm -f ../shlib/*.a make[2]: Leaving directory '/<>/build' /usr/bin/make -C build clean make[2]: Entering directory '/<>/build' rm -f *.[acho] *.glo make[2]: Leaving directory '/<>/build' /usr/bin/make -C build all LCL=lnx CC="arm-linux-gnueabihf-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG" \ LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \ LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a make[2]: Entering directory '/<>/build' chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . rm -f ../include/asn.h mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_connssl.h . ./ln-if-absent ../connect/ncbi_lbos.h . ./ln-if-absent ../connect/ncbi_lbosp.h . ./ln-if-absent ../connect/parson.h . ./ln-if-absent ../connect/ncbi_lbsm.h . make[2]: [makefile:714: copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . make[2]: [makefile:715: copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_socketp.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/ncbi_version.h . ./ln-if-absent ../connect/ncbi_base64.h . ./ln-if-absent ../connect/urlquery.h ../include mkdir ../include/connect mkdir: cannot create directory ‘../include/connect’: File exists make[2]: [makefile:727: copy] Error 1 (ignored) chmod ug+rw,o+r ../include/connect cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . ./ln-if-absent ../ctools/*.h . mkdir ../include/ctools mkdir: cannot create directory ‘../include/ctools’: File exists make[2]: [makefile:738: copy] Error 1 (ignored) chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../api/*.inc . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. make[2]: [makefile:771: copy] Error 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. make[2]: [makefile:772: copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. make[2]: [makefile:773: copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. make[2]: [makefile:774: copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. make[2]: [makefile:775: copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. make[2]: [makefile:776: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. make[2]: [makefile:777: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. make[2]: [makefile:778: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. make[2]: [makefile:779: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . make[2]: [makefile:780: copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. make[2]: [makefile:781: copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. make[2]: [makefile:782: copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. make[2]: [makefile:783: copy] Error 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . ./ln-if-absent ../algo/blast/core/*.inl . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . cp -fp ../algo/blast/composition_adjustment/*.h \ ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . echo Waiting...go Waiting...go arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbithr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ncbithr.c:289: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbithr.c: In function ‘s_TlsDestroyAll’: ncbithr.c:2529:11: warning: variable ‘err_code’ set but not used [-Wunused-but-set-variable] 2529 | int err_code = 0; | ^~~~~~~~ cp -p ncbithr.o ../lib arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimain.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbimain.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbimain.c:82:1: warning: return type defaults to ‘int’ [-Wimplicit-int] 82 | main(int argc, char *argv[]) | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbibs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbibs.c:55: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbibs.c: In function ‘Nlm_BSSeek’: ncbibs.c:448:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 448 | if (sp == bsp->seekptr) /* already in right position */ | ^~ ncbibs.c:451:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 451 | bsp->seekptr = sp; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF wwwutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbiwww.h:106, from wwwutils.c:150: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbierr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: In function ‘strncat’, inlined from ‘ErrMsgRoot_fopen’ at ncbierr.c:955:13: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 4096 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbienv.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbienv.c:310: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbienv.c:310: In function ‘strncpy’, inlined from ‘Nlm_WorkGetAppParam.part.0’ at ncbienv.c:466:11: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from corepriv.h:85, from ncbienv.c:310: ncbienv.c: In function ‘Nlm_WorkGetAppParam.part.0’: ../include/ncbistr.h:279:20: note: length computed here 279 | #define Nlm_StrLen strlen ../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’ 305 | #define StrLen Nlm_StrLen | ^~~~~~~~~~ ncbienv.c:464:36: note: in expansion of macro ‘StrLen’ 464 | Nlm_Int2 bytesToAppend = StrLen(eip->name) + 1; | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbienv.c:310: In function ‘strncpy’, inlined from ‘Nlm_TransientLookup.part.0’ at ncbienv.c:1788:15: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from corepriv.h:85, from ncbienv.c:310: ncbienv.c: In function ‘Nlm_TransientLookup.part.0’: ../include/ncbistr.h:279:20: note: length computed here 279 | #define Nlm_StrLen strlen ../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’ 305 | #define StrLen Nlm_StrLen | ^~~~~~~~~~ ncbienv.c:1786:31: note: in expansion of macro ‘StrLen’ 1786 | bytesToAppend = StrLen(eip->name) + 1; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbifile.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbifile.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbiprop.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbiprop.c:104: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimath.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbimath.h:69, from ncbimath.c:90: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbimath.c: In function ‘general_lngamma’: ncbimath.c:230:5: warning: ‘y[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 230 | ++y[0]; | ~^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimem.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbimem.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimisc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbimisc.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbimisc.c: In function ‘Nlm_MD5Final’: ncbimisc.c:2250:26: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] 2250 | memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */ | ^ ncbimisc.c: In function ‘XmlPathSuffixIs’: ncbimisc.c:2966:58: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2966 | if (StringHasNoText (parentFilter) || parent != NULL && StringICmp (parent->name, parentFilter) == 0) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimsg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbimsg.c:167: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbistr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbistr.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisgml.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbisgml.c:83: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ncbisgml.c:83: In function ‘strncat’, inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbitime.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbitime.c:77: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbilang.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbilang.c:57: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnbufo.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asnbufo.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asndebin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asndebin.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asndebin.c: In function ‘AsnBinReadVal’: asndebin.c:565:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 565 | else | ^~~~ asndebin.c:568:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 568 | if (atp == NULL) | ^~ asndebin.c:634:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 634 | else /* empty sequence written */ | ^~~~ asndebin.c:636:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 636 | while (atp2 != NULL) | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnenbin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnenbin.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asngen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asngen.c:80: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asngen.c: In function ‘AsnFindNthPieceOfObject’: asngen.c:540:16: warning: variable ‘aeop’ set but not used [-Wunused-but-set-variable] 540 | AsnExpOptPtr aeop; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnio.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnio.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asnio.c: In function ‘AsnIoWriteBlock’: asnio.c:698:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 698 | else /* use alternative write function */ | ^~~~ asnio.c:701:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 701 | if (retval != bytes_to_write) | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnlex.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnlex.c:52: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asnlex.c: In function ‘AsnTxtReadId’: asnlex.c:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 198 | if ((token == END_STRUCT) && ((isa == SEQ_TYPE) || (isa == SET_TYPE))) | ^~ asnlex.c:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 201 | if (token != IDENT) | ^~ asnlex.c: In function ‘AsnTxtReadVal’: asnlex.c:345:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 345 | else /* empty sequence written */ | ^~~~ asnlex.c:347:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 347 | while (atp2 != NULL) | ^~~~~ At top level: asnlex.c:1290:13: warning: ‘AsnLexWordUTF8’ defined but not used [-Wunused-function] 1290 | static Int2 AsnLexWordUTF8 (AsnIoPtr aip) | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnlext.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnlext.c:57: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnout.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnout.c:79: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asnout.c: In function ‘AsnOutput’: asnout.c:159:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 159 | else | ^~~~ asnout.c:162:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 162 | for (i = 0; i < 12; i++) | ^~~ asnout.c:213:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 213 | if (! loader) | ^~ asnout.c:216:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 216 | attvp = p.root_tmpvalue.next; | ^~~~~ asnout.c:270:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 270 | if (! loader) | ^~ asnout.c:273:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 273 | attp = p.root_tmptype.next; | ^~~~ asnout.c:450:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 450 | if (! loader) | ^~ asnout.c:453:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 453 | i = 1; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnprint.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnprint.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asnprint.c: In function ‘GetXMLModuleName’: asnprint.c:102:2: warning: statement with no effect [-Wunused-value] 102 | for (currmod; currmod != NULL; currmod = currmod->next) | ^~~ asnprint.c: In function ‘AsnPrintCloseStruct’: asnprint.c:1774:7: warning: variable ‘isa’ set but not used [-Wunused-but-set-variable] 1774 | Int2 isa; | ^~~ asnprint.c: In function ‘AsnPrintModuleXMLInc’: asnprint.c:2095:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] 2095 | CharPtr ptr; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asntypes.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asntypes.c:111: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asntypes.c: In function ‘AsnEnumTypeStr’: asntypes.c:1383:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1383 | if ((atp->type->isa != ENUM_TYPE) && (atp->type->isa != INTEGER_TYPE)) | ^~ asntypes.c:1386:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1386 | avnp = (AsnValxNodePtr) atp->branch; | ^~~~ asntypes.c: In function ‘AsnTreeLoad’: asntypes.c:1274:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1274 | fscanf(fp, "%d %d %d", &numval, &numtype, &nummod); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asntypes.c:1288:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1288 | fscanf(fp, "%d %s %ld %lf %d", &isa, name, &intvalue, &realvalue, &next); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asntypes.c:1301:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fscanf(fp, "%d %s %d %d %d %d %d %d %d %d %d %d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1302 | &isa, name, &tagclass, &tagnumber, bools, bools+1, bools+2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1303 | bools+3, bools+4, &defaultvalue, &type, &branch, &next); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asntypes.c:1333:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1333 | fscanf(fp, "%s %s %d %d", name, fname, &type, &next); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asngenob.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asngenob.c:72: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gifgen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from gifgen.c:137: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/ncbi.h:59, from gifgen.c:137: gifgen.c: In function ‘gdImageSetClip’: ../include/ncbimem.h:194:21: warning: ‘__builtin_memcmp_eq’ reading 16 bytes from a region of size 4 [-Wstringop-overflow=] 194 | #define Nlm_MemCmp memcmp ../include/ncbimem.h:213:17: note: in expansion of macro ‘Nlm_MemCmp’ 213 | #define MemCmp Nlm_MemCmp | ^~~~~~~~~~ gifgen.c:1850:17: note: in expansion of macro ‘MemCmp’ 1850 | if (clip && MemCmp(&clip, &empty_clip, sizeof(gdRect))) { | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF togif.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from togif.c:111: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ togif.c: In function ‘gdImageCreateFromGif’: togif.c:961:12: warning: variable ‘AspectRatio’ set but not used [-Wunused-but-set-variable] 961 | int AspectRatio; | ^~~~~~~~~~~ togif.c:960:12: warning: variable ‘Background’ set but not used [-Wunused-but-set-variable] 960 | int Background; | ^~~~~~~~~~ togif.c:959:12: warning: variable ‘ColorResolution’ set but not used [-Wunused-but-set-variable] 959 | int ColorResolution; | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbithrs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ncbithrs.c:289: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbithrs.c: In function ‘s_TlsDestroyAll’: ncbithrs.c:2529:11: warning: unused variable ‘err_code’ [-Wunused-variable] 2529 | int err_code = 0; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c regex.c: In function ‘re_match_2’: regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3768 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3915 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2); | ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 3968 | PUSH_FAILURE_POINT (p + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~ regex.c:4071:25: warning: variable ‘sdummy’ set but not used [-Wunused-but-set-variable] 4071 | const char *sdummy; | ^~~~~~ regex.c:4070:28: warning: variable ‘pdummy’ set but not used [-Wunused-but-set-variable] 4070 | unsigned char *pdummy; | ^~~~~~ regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 4107 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable] 2368 | char *destination; \ | ^~~~~~~~~~~ regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’ 4120 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tsprintf.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbiargs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbiargs.c:82: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tree.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/treemgr.h:67, from tree.c:79: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/matrix.h:44, from matrix.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_socket.c:75: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbi_socket.c: In function ‘s_GetLocalPort’: ncbi_socket.c:440:50: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign] 440 | if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0 | ^~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 117 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncbi_socket.c: In function ‘s_IsConnected_’: ncbi_socket.c:2572:73: warning: pointer targets in passing argument 5 of ‘getsockopt’ differ in signedness [-Wpointer-sign] 2572 | if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len) | ^~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:210:32: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 210 | socklen_t *__restrict __optlen) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ncbi_socket.c: In function ‘s_CreateOnTop’: ncbi_socket.c:4435:35: warning: pointer targets in passing argument 3 of ‘getpeername’ differ in signedness [-Wpointer-sign] 4435 | if (getpeername(fd, &peer.sa, &peerlen) != 0) { | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:131:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 131 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncbi_socket.c:4471:43: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign] 4471 | if (getsockname(fd, &peer.sa, &peerlen) != 0) | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 117 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncbi_socket.c: In function ‘s_CreateListening’: ncbi_socket.c:4865:48: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign] 4865 | error = getsockname(x_lsock, &addr.sa, &addrlen) != 0 | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 117 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ ncbi_socket.c: In function ‘s_Accept’: ncbi_socket.c:5105:49: warning: pointer targets in passing argument 3 of ‘accept’ differ in signedness [-Wpointer-sign] 5105 | if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) { | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:233:28: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 233 | socklen_t *__restrict __addr_len); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ncbi_socket.c: In function ‘s_RecvMsg’: ncbi_socket.c:5409:52: warning: pointer targets in passing argument 6 of ‘recvfrom’ differ in signedness [-Wpointer-sign] 5409 | (struct sockaddr*) &sin, &sinlen); | ^~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from /usr/arm-linux-gnueabihf/include/sys/socket.h:269, from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/bits/socket2.h:65:49: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 65 | __SOCKADDR_ARG __addr, socklen_t *__restrict __addr_len) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ncbi_socket.c: In function ‘TRIGGER_Create’: ncbi_socket.c:5661:18: warning: unused variable ‘x_id’ [-Wunused-variable] 5661 | unsigned int x_id = ++s_ID_Counter; | ^~~~ ncbi_socket.c: In function ‘DSOCK_Bind’: ncbi_socket.c:7390:51: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign] 7390 | error = getsockname(sock->sock, &addr.sa, &addrlen) != 0 | ^~~~~~~~ | | | TSOCK_socklen_t * {aka int *} In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/arm-linux-gnueabihf/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’} 117 | socklen_t *__restrict __len) __THROW; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_buffer.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_types.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_core.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_core.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_core_c.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_util.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_util.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_priv.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_ansi_ext.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_connection.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_connector.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_connutil.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_file_connector.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_heapmgr.c:115: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_http_connector.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbi_http_connector.c: In function ‘x_Authenticate’: ncbi_http_connector.c:220:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 220 | s[userlen++] = ':'; | ~~~~~~~~~~~~~^~~~~ ncbi_http_connector.c:174:10: note: at offset -1 to object ‘buf’ with size 336 declared here 174 | char buf[80+sizeof(uuu->net_info->user)*4], *s; | ^~~ ncbi_http_connector.c:220:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 220 | s[userlen++] = ':'; | ~~~~~~~~~~~~~^~~~~ ncbi_http_connector.c:174:10: note: at offset -1 to object ‘buf’ with size 336 declared here 174 | char buf[80+sizeof(uuu->net_info->user)*4], *s; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_server_info.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_service.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_service.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_version.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_version.h:37, from ncbi_version.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_service_connector.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_ftp_connector.c:49: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_dispd.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_local.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_local.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_socket_connector.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urlquery.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from urlquery.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF binary.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/binary.h:60, from binary.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_sendmail.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn_connection.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lbos.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_lbos.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’: ncbi_lbos.c:756:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 756 | if (s_LBOS_Lbosresolver == NULL) | ^~ ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 759 | s_LBOS_Lbosresolver = strdup(str + 7); | ^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF parson.c parson.c: In function ‘remove_comments’: parson.c:281:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 281 | for (i = 0; i < (ptr - string) + end_token_len; i++) | ^~~ parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 283 | string = ptr + end_token_len - 1; | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from parson.c:32: In function ‘strncpy’, inlined from ‘parson_strndup’ at parson.c:135:5, inlined from ‘parson_strdup’ at parson.c:140:12, inlined from ‘x_json_parse_string_with_comments’ at parson.c:913:27: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ parson.c: In function ‘x_json_parse_string_with_comments’: parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from parson.c:32: In function ‘strncpy’, inlined from ‘parson_strndup’ at parson.c:135:5, inlined from ‘x_json_value_init_string’ at parson.c:1104:12: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ parson.c: In function ‘x_json_value_init_string’: parson.c:1101:18: note: length computed here 1101 | string_len = strlen(string); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ipv6.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_ipv6.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnflpt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from drwnflpt.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnfspc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from drwnfspc.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnmfls.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from drwnmfls.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rm -f libncbi.a ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o ncbi_lbos.o parson.o ncbi_ipv6.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbi.a ../lib ranlib ../lib/libncbi.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -DHAVE_LIBGNUTLS ncbi_gnutls.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_gnutls.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbi_gnutls.c: In function ‘s_GnuTlsCreate’: ncbi_gnutls.c:293:5: warning: ‘gnutls_connection_end_t’ is deprecated [-Wdeprecated-declarations] 293 | gnutls_connection_end_t end = (side == eSOCK_Client | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ncbi_gnutls.c:35: ncbi_gnutls.c: In function ‘s_GnuTlsInit’: ncbi_priv.h:217:33: warning: ‘version’ may be used uninitialized in this function [-Wmaybe-uninitialized] 217 | _mess.message = NcbiMessagePlusError(&_mess.dynamic, \ | ^~~~~~~~~~~~~~~~~~~~ ncbi_gnutls.c:582:17: note: ‘version’ was declared here 582 | const char* version; | ^~~~~~~ rm -f libconnssl.a ar cru libconnssl.a ncbi_gnutls.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libconnssl.a ../lib ranlib ../lib/libconnssl.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objacces.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnacces.h:9, from objacces.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objacces.c: In function ‘LinkSetAsnWrite’: objacces.c:140:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 140 | if (atp == NULL) | ^~ objacces.c:143:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 143 | if (lsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objacces.c: In function ‘LinkSetAsnRead’: objacces.c:216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 216 | if (atp == NULL) | ^~ objacces.c:219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 219 | lsp = LinkSetNew(); | ^~~ objacces.c:220:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 220 | if (lsp == NULL) | ^~ objacces.c:223:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 223 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ | ^~ objacces.c:226:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 226 | if (atp == NULL) | ^~ objacces.c:228:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 228 | if (AsnReadVal(aip, atp, &av) <= 0) /* get the num */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objalign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objalign.h:103, from objalign.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objalign.c: In function ‘CommonSeqAlignLabelFunc’: objalign.c:135:27: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 135 | CharPtr curr, typelabel, tmp; | ^~~ objalign.c: In function ‘SeqAlignAsnRead’: objalign.c:597:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 597 | if (atp == NULL) | ^~ objalign.c:600:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 600 | sap = SeqAlignNew(); | ^~~ objalign.c:601:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 601 | if (sap == NULL) | ^~ objalign.c:604:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 604 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘DenseDiagAsnWrite’: objalign.c:1020:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1020 | if (atp == NULL) | ^~ objalign.c:1023:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1023 | if (ddp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objalign.c: In function ‘DenseDiagAsnRead’: objalign.c:1112:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1112 | if (atp == NULL) | ^~ objalign.c:1115:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1115 | ddp = DenseDiagNew(); | ^~~ objalign.c:1116:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1116 | if (ddp == NULL) | ^~ objalign.c:1119:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1119 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘DenseSegAsnWrite’: objalign.c:1268:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1268 | if (atp == NULL) | ^~ objalign.c:1271:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1271 | if (dsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objalign.c: In function ‘DenseSegAsnRead’: objalign.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1374 | if (atp == NULL) | ^~ objalign.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1377 | dsp = DenseSegNew(); | ^~~ objalign.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1378 | if (dsp == NULL) | ^~ objalign.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1381 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘StdSegAsnWrite’: objalign.c:1559:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1559 | if (atp == NULL) | ^~ objalign.c:1562:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1562 | if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objalign.c:1581:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1581 | if (! SeqLocSetAsnWrite(ssp->loc, aip, STD_SEG_loc, STD_SEG_loc_E)) | ^~ objalign.c:1584:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1584 | if (ssp->scores != NULL) | ^~ objalign.c: In function ‘StdSegAsnRead’: objalign.c:1626:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1626 | if (atp == NULL) | ^~ objalign.c:1629:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1629 | ssp = StdSegNew(); | ^~~ objalign.c:1630:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1630 | if (ssp == NULL) | ^~ objalign.c:1633:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1633 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘SeqAlignSetAsnWrite’: objalign.c:1704:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1704 | if (atp == NULL) | ^~ objalign.c:1708:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1708 | oldsap = sap; | ^~~~~~ objalign.c: In function ‘PackSegAsnWrite’: objalign.c:1892:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1892 | if (atp == NULL) | ^~ objalign.c:1895:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1895 | if (psp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objalign.c:1926:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1926 | if (! AsnCloseStruct(aip, PACKED_SEG_starts, (Pointer)psp->starts)) | ^~ objalign.c:1929:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1929 | av.ptrvalue = psp->present; | ^~ objalign.c: In function ‘PackSegAsnRead’: objalign.c:1999:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1999 | if (atp == NULL) | ^~ objalign.c:2002:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2002 | psp = PackSegNew(); | ^~~ objalign.c:2003:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2003 | if (psp == NULL) | ^~ objalign.c:2006:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2006 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ objalign.c: In function ‘SplicedSegAsnRead’: objalign.c:2179:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2179 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SparseSegAsnRead’: objalign.c:2422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2422 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SplicedExonAsnRead’: objalign.c:2614:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2614 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SplicedSegModifierFree’: objalign.c:2875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2875 | Pointer pnt; | ^~~ objalign.c: In function ‘ProductPosFree’: objalign.c:3050:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3050 | Pointer pnt; | ^~~ objalign.c: In function ‘SplicedExonChunkFree’: objalign.c:3225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3225 | Pointer pnt; | ^~~ objalign.c: In function ‘SpliceSiteAsnRead’: objalign.c:3469:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3469 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘ProtPosAsnRead’: objalign.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3626 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SparseAlignAsnRead’: objalign.c:3798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3798 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SparseSegExtAsnRead’: objalign.c:4020:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4020 | AsnReadFunc func; | ^~~~ objalign.c: In function ‘SplicedSegModifierAsnRead’: objalign.c:2955:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2955 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objalign.c: In function ‘SplicedExonChunkAsnRead’: objalign.c:3326:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3326 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objalign.c: In function ‘ProductPosAsnRead’: objalign.c:3130:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3130 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objall.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objall.h:64, from objall.c:63: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objbibli.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnbibli.h:9, from objbibli.c:113: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objbibli.c: In function ‘AffilAsnRead’: objbibli.c:208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 208 | if (atp == NULL) | ^~ objbibli.c:211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 211 | afp = AffilNew(); | ^~~ objbibli.c: In function ‘AffilAsnWrite’: objbibli.c:296:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 296 | if (atp == NULL) | ^~ objbibli.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 299 | if (afp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘AuthListFree’: objbibli.c:458:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 458 | if (alp->affil != NULL) | ^~ objbibli.c:460:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 460 | return (AuthListPtr)MemFree(alp); | ^~~~~~ objbibli.c: In function ‘AuthListAsnRead’: objbibli.c:489:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 489 | if (atp == NULL) | ^~ objbibli.c:492:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 492 | alp = AuthListNew(); | ^~~ objbibli.c: In function ‘AuthListAsnWrite’: objbibli.c:583:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 583 | if (atp == NULL) | ^~ objbibli.c:586:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 586 | if (alp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:590:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 590 | if (! AsnOpenStruct(aip, atp, (Pointer)alp)) /* open AuthList SEQUENCE */ | ^~ objbibli.c:593:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 593 | av.ptrvalue = alp->names; | ^~ objbibli.c: In function ‘AuthorFree’: objbibli.c:677:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 677 | if (ap->affil != NULL) | ^~ objbibli.c:679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 679 | return (AuthorPtr)MemFree(ap); | ^~~~~~ objbibli.c: In function ‘AuthorAsnRead’: objbibli.c:707:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 707 | if (atp == NULL) | ^~ objbibli.c:710:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 710 | ap = AuthorNew(); | ^~ objbibli.c: In function ‘AuthorAsnWrite’: objbibli.c:779:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 779 | if (atp == NULL) | ^~ objbibli.c:782:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 782 | if (ap == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitArtAsnRead’: objbibli.c:925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 925 | if (atp == NULL) | ^~ objbibli.c:928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 928 | cap = CitArtNew(); | ^~~ objbibli.c: In function ‘CitArtAsnWrite’: objbibli.c:1027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1027 | if (atp == NULL) | ^~ objbibli.c:1030:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1030 | if (cap == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:1034:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1034 | if (! AsnOpenStruct(aip, atp, (Pointer)cap)) /* open the SEQUENCE */ | ^~ objbibli.c:1037:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1037 | if (cap->title != NULL) | ^~ objbibli.c: In function ‘ImprintAsnRead’: objbibli.c:1152:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1152 | if (atp == NULL) | ^~ objbibli.c:1155:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1155 | ip = ImprintNew(); | ^~ objbibli.c: In function ‘ImprintAsnWrite’: objbibli.c:1251:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1251 | if (atp == NULL) | ^~ objbibli.c:1254:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1254 | if (ip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitRetractAsnRead’: objbibli.c:1391:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1391 | if (atp == NULL) | ^~ objbibli.c:1394:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1394 | crp = CitRetractNew(); | ^~~ objbibli.c: In function ‘CitRetractAsnWrite’: objbibli.c:1445:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1445 | if (atp == NULL) | ^~ objbibli.c:1448:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1448 | if (crp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitJourAsnRead’: objbibli.c:1524:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1524 | if (atp == NULL) | ^~ objbibli.c:1527:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1527 | cjp = CitJourNew(); | ^~~ objbibli.c: In function ‘CitJourAsnWrite’: objbibli.c:1576:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1576 | if (atp == NULL) | ^~ objbibli.c:1579:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1579 | if (cjp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:1585:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1585 | if (! ImprintAsnWrite(cjp->imp, aip, CIT_JOUR_imp)) | ^~ objbibli.c:1587:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1587 | if (! AsnCloseStruct(aip, atp, (Pointer)cjp)) /* end SEQUENCE */ | ^~ objbibli.c: In function ‘CitBookAsnRead’: objbibli.c:1676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1676 | if (atp == NULL) | ^~ objbibli.c:1679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1679 | cbp = CitBookNew(); | ^~~ objbibli.c: In function ‘CitBookAsnWrite’: objbibli.c:1744:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1744 | if (atp == NULL) | ^~ objbibli.c:1747:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1747 | if (cbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:1760:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1760 | if (! ImprintAsnWrite(cbp->imp, aip, CIT_BOOK_imp)) | ^~ objbibli.c:1762:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1762 | if (! AsnCloseStruct(aip, atp, (Pointer)cbp)) /* end SEQUENCE */ | ^~ objbibli.c: In function ‘CitProcAsnWrite’: objbibli.c:1879:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1879 | if (atp == NULL) | ^~ objbibli.c:1882:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1882 | if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:1901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1901 | if (! AsnCloseStruct(aip, CIT_PROC_meet, (Pointer)cpp->otherdata)) | ^~ objbibli.c:1903:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1903 | if (! AsnCloseStruct(aip, atp, (Pointer)cpp)) /* end SEQUENCE */ | ^~ objbibli.c: In function ‘CitLetAsnWrite’: objbibli.c:1995:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1995 | if (atp == NULL) | ^~ objbibli.c:1998:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1998 | if (clp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitPatAsnRead’: objbibli.c:2091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2091 | if (atp == NULL) | ^~ objbibli.c:2094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2094 | cpp = CitPatNew(); | ^~~ objbibli.c: In function ‘CitPatAsnWrite’: objbibli.c:2213:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2213 | if (atp == NULL) | ^~ objbibli.c:2216:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2216 | if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘IdPatAsnRead’: objbibli.c:2346:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2346 | if (atp == NULL) | ^~ objbibli.c:2349:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2349 | idp = IdPatNew(); | ^~~ objbibli.c: In function ‘IdPatAsnWrite’: objbibli.c:2412:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2412 | if (atp == NULL) | ^~ objbibli.c:2415:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2415 | if (idp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitGenAsnRead’: objbibli.c:2546:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2546 | if (atp == NULL) | ^~ objbibli.c:2549:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2549 | cgp = CitGenNew(); | ^~~ objbibli.c: In function ‘CitGenAsnWrite’: objbibli.c:2627:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2627 | if (atp == NULL) | ^~ objbibli.c:2630:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2630 | if (cgp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘TitleAsnWrite’: objbibli.c:2825:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2825 | if (atp == NULL) | ^~ objbibli.c:2828:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2828 | if (tp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘CitSubFree’: objbibli.c:2909:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2909 | if (csp == NULL) | ^~ objbibli.c:2912:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2912 | AuthListFree(csp->authors); | ^~~~~~~~~~~~ objbibli.c: In function ‘CitSubAsnRead’: objbibli.c:2943:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2943 | if (atp == NULL) | ^~ objbibli.c:2946:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2946 | csp = CitSubNew(); | ^~~ objbibli.c:2958:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2958 | if (atp == NULL) | ^~ objbibli.c:2961:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2961 | if (atp == CIT_SUB_imp) | ^~ objbibli.c: In function ‘CitSubAsnWrite’: objbibli.c:3029:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3029 | if (atp == NULL) | ^~ objbibli.c:3032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3032 | if (csp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c:3038:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3038 | if (! AuthListAsnWrite(csp->authors, aip, CIT_SUB_authors)) | ^~ objbibli.c:3041:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3041 | if (csp->imp != NULL) | ^~ objbibli.c: In function ‘PatPrioritySetAsnRead’: objbibli.c:3694:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3694 | if (ppp == NULL) | ^~ objbibli.c:3697:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3697 | if (head == NULL) | ^~ objbibli.c:3715:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3715 | if (atp == NULL) | ^~ objbibli.c:3717:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3717 | ppp->date = DateAsnRead(aip, atp); | ^~~ objbibli.c: In function ‘PatPrioritySetAsnWrite’: objbibli.c:3755:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3755 | if (! AsnOpenStruct(aip, set, (Pointer)ppp)) /* open the SEQUENCE OF */ | ^~ objbibli.c:3758:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3758 | for (tmp = ppp; tmp != NULL; tmp = tmp->next) | ^~~ objbibli.c: In function ‘ArticleIdAsnRead’: objbibli.c:3849:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3849 | if (atp == NULL) | ^~ objbibli.c:3852:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3852 | aidp = ArticleIdNew(); | ^~~~ objbibli.c: In function ‘ArticleIdAsnWrite’: objbibli.c:3925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3925 | if (atp == NULL) | ^~ objbibli.c:3928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3928 | if (aidp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objbibli.c: In function ‘PubStatusDateAsnRead’: objbibli.c:4039:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 4039 | if (atp == NULL) | ^~ objbibli.c:4042:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 4042 | psdp = PubStatusDateNew(); | ^~~~ objbibli.c: In function ‘PubStatusDateAsnWrite’: objbibli.c:4091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 4091 | if (atp == NULL) | ^~ objbibli.c:4094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 4094 | if (psdp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objfeat.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objfeat.h:48, from objfeat.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objfeat.c: In function ‘ModelEvidenceSupportAsnRead’: objfeat.c:1500:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1500 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘ExperimentSupportAsnRead’: objfeat.c:1748:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1748 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘ProgramIdAsnRead’: objfeat.c:1933:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1933 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘EvidenceBasisAsnRead’: objfeat.c:2103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2103 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘InferenceSupportAsnRead’: objfeat.c:2267:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2267 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘ModelEvidenceItemAsnRead’: objfeat.c:2483:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2483 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘SeqFeatSupportAsnRead’: objfeat.c:2688:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2688 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘RNAQualAsnRead’: objfeat.c:4244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4244 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘RNAQualSetAsnRead’: objfeat.c:4396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4396 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘RNAGenAsnRead’: objfeat.c:4524:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4524 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘GeneNomenclatureAsnRead’: objfeat.c:4707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4707 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘OrgNameMatch’: objfeat.c:5957:28: warning: self-comparison always evaluates to false [-Wtautological-compare] 5957 | || onp2->mgcode != onp2->mgcode | ^~ objfeat.c: In function ‘TaxElementAsnWrite’: objfeat.c:7399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 7399 | if (! AsnOpenStruct(aip, atp, (Pointer)tep)) | ^~ objfeat.c:7402:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 7402 | av.intvalue = (Int4)(tep->fixed_level); | ^~ objfeat.c: In function ‘PCRPrimerAsnRead’: objfeat.c:8276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8276 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PCRPrimerSetAsnRead’: objfeat.c:8421:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8421 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PCRReactionAsnRead’: objfeat.c:8542:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8542 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PCRReactionSetAsnRead’: objfeat.c:8685:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8685 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘CloneRefAsnRead’: objfeat.c:8812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8812 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘CloneSeqSetAsnRead’: objfeat.c:9005:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9005 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘CloneSeqAsnRead’: objfeat.c:9135:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9135 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘SomaticOriginAsnRead’: objfeat.c:9487:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9487 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘SomaticOriginConditionAsnRead’: objfeat.c:9566:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9566 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘VariationRefAsnRead’: objfeat.c:9645:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9645 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘Consequence_loss_of_heterozygosityAsnRead’: objfeat.c:10687:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10687 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘Consequence_frameshiftAsnRead’: objfeat.c:10765:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10765 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘VarRefDataFree’: objfeat.c:10865:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 10865 | Pointer pnt; | ^~~ objfeat.c: In function ‘VarRefDataSetAsnRead’: objfeat.c:10918:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10918 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘Consequence_elementFree’: objfeat.c:11112:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 11112 | Pointer pnt; | ^~~ objfeat.c: In function ‘VariationInstAsnRead’: objfeat.c:11241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11241 | AsnReadFunc func; | ^~~~ objfeat.c: At top level: objfeat.c:11393:1: warning: "/*" within comment [-Wcomment] 11393 | /************************************************** | objfeat.c: In function ‘VariantPropertiesAsnRead’: objfeat.c:11422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11422 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PhenotypeAsnRead’: objfeat.c:11746:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11746 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘PopulationDataAsnRead’: objfeat.c:11945:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11945 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘ExtLocAsnRead’: objfeat.c:12161:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12161 | AsnReadFunc func; | ^~~~ objfeat.c: In function ‘Seq_seqFree’: objfeat.c:12327:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 12327 | Pointer pnt; | ^~~ objfeat.c: In function ‘DeltaItemAsnRead’: objfeat.c:12360:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12360 | AsnReadFunc func; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objgen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asngen.h:9, from objgen.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objgen.c: In function ‘DateClean’: objgen.c:161:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 161 | if (dp == NULL) | ^~ objgen.c:164:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 164 | memset(dp, 0, sizeof(NCBI_Date)); | ^~~~~~ objgen.c: In function ‘DateAsnWrite’: objgen.c:399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 399 | if (atp == NULL) | ^~ objgen.c:402:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 402 | if (dp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘DateAsnRead’: objgen.c:494:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 494 | if (atp == NULL) | ^~ objgen.c:497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 497 | dp = DateNew(); | ^~ objgen.c:498:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 498 | if (dp == NULL) | ^~ objgen.c:501:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 501 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the CHOICE value (nothing) */ | ^~ objgen.c: In function ‘DbtagFree’: objgen.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 752 | if (dbt == NULL) | ^~ objgen.c:755:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 755 | dbt->tag = ObjectIdFree(dbt->tag); | ^~~ objgen.c: In function ‘DbtagAsnRead’: objgen.c:784:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 784 | if (atp == NULL) | ^~ objgen.c:787:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 787 | dbt = DbtagNew(); | ^~~ objgen.c:788:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 788 | if (dbt == NULL) | ^~ objgen.c:791:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 791 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the START_STRUCT */ | ^~ objgen.c:799:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 799 | if (dbt->tag == NULL) | ^~ objgen.c:802:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 802 | atp = AsnReadId(aip, amp, atp); if (atp == NULL) goto erret; /* END_STRUCT */ | ^~~ objgen.c: In function ‘DbtagAsnWrite’: objgen.c:833:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 833 | if (atp == NULL) | ^~ objgen.c:836:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 836 | if (dbt == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘ObjectIdAsnRead’: objgen.c:980:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 980 | if (atp == NULL) | ^~ objgen.c:983:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 983 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the CHOICE value (nothing) */ | ^~ objgen.c:989:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 989 | if (oid == NULL) | ^~ objgen.c:991:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 991 | if (atp == OBJECT_ID_id) | ^~ objgen.c: In function ‘ObjectIdAsnWrite’: objgen.c:1024:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1024 | if (atp == NULL) | ^~ objgen.c:1027:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1027 | if (oid == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘NameStdFree’: objgen.c:1174:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1174 | if (nsp == NULL) | ^~ objgen.c:1177:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1177 | for (i = 0; i < 7; i++) | ^~~ objgen.c: In function ‘NameStdAsnRead’: objgen.c:1208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1208 | if (atp == NULL) | ^~ objgen.c:1211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1211 | nsp = NameStdNew(); | ^~~ objgen.c:1212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1212 | if (nsp == NULL) | ^~ objgen.c:1215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1215 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the START_STRUCT */ | ^~ objgen.c: In function ‘NameStdAsnWrite’: objgen.c:1271:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1271 | if (atp == NULL) | ^~ objgen.c:1274:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1274 | if (nsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘PersonIdFree’: objgen.c:1368:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1368 | if (pid == NULL) | ^~ objgen.c:1371:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1371 | if (pid->choice == 1) /* Dbtag */ | ^~ objgen.c: In function ‘PersonIdAsnWrite’: objgen.c:1464:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1464 | if (atp == NULL) | ^~ objgen.c:1467:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1467 | if (pid == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objgen.c: In function ‘IntFuzzAsnRead’: objgen.c:1682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1682 | if (atp == NULL) | ^~ objgen.c:1685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1685 | ifp = IntFuzzNew(); | ^~~ objgen.c:1686:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1686 | if (ifp == NULL) | ^~ objgen.c:1689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1689 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the CHOICE (nothing) */ | ^~ objgen.c: In function ‘UserFieldAsnRead’: objgen.c:1944:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1944 | if (atp == NULL) | ^~ objgen.c:1947:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1947 | ufp = UserFieldNew(); | ^~~ objgen.c: In function ‘UserObjectAsnRead’: objgen.c:2434:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2434 | if (atp == NULL) | ^~ objgen.c:2437:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2437 | uop = UserObjectNew(); | ^~~ objgen.c:2438:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2438 | if (uop == NULL) | ^~ objgen.c:2441:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2441 | if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objloc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from objloc.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objloc.c: In function ‘SeqIdAsnWrite’: objloc.c:313:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 313 | if (atp == NULL) | ^~ objloc.c:316:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 316 | if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqIdAsnRead’: objloc.c:443:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 443 | if (atp == NULL) | ^~ objloc.c:446:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 446 | anp = ValNodeNew(NULL); | ^~~ objloc.c: In function ‘SeqIdDup’: objloc.c:587:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 587 | if (oldid == NULL) | ^~ objloc.c:590:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 590 | newid = ValNodeNew(NULL); | ^~~~~ objloc.c: In function ‘SeqIdSetAsnRead’: objloc.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 752 | if (AsnReadVal(aip, atp, &av) <= 0) /* end struct */ | ^~ objloc.c:754:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 754 | if (first == NULL) | ^~ objloc.c: In function ‘SeqIdSetAsnWrite’: objloc.c:786:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 786 | if (atp2 == NULL) | ^~ objloc.c:789:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 789 | if (anp == NULL) { AsnNullValueMsg(aip, settype); goto erret; } | ^~ objloc.c: In function ‘TextSeqIdAsnWrite’: objloc.c:864:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 864 | if (atp == NULL) | ^~ objloc.c:867:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 867 | if (tsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘TextSeqIdAsnRead’: objloc.c:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 934 | if (atp == NULL) | ^~ objloc.c:937:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 937 | tsip = TextSeqIdNew(); | ^~~~ objloc.c:938:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 938 | if (tsip == NULL) | ^~ objloc.c:941:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 941 | if ((AsnReadVal(aip, oldtype, &av)) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘PatentSeqIdAsnWrite’: objloc.c:1018:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1018 | if (atp == NULL) | ^~ objloc.c:1021:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1021 | if (psip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘PatentSeqIdAsnRead’: objloc.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1068 | if (atp == NULL) | ^~ objloc.c:1071:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1071 | psip = PatentSeqIdNew(); | ^~~~ objloc.c:1072:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1072 | if (psip == NULL) | ^~ objloc.c:1075:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1075 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘GiimAsnWrite’: objloc.c:1151:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1151 | if (atp == NULL) | ^~ objloc.c:1154:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1154 | if (gip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘GiimAsnRead’: objloc.c:1216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1216 | if (gip == NULL) | ^~ objloc.c:1219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1219 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘PDBSeqIdAsnWrite’: objloc.c:1305:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1305 | if (atp == NULL) | ^~ objloc.c:1308:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1308 | if (pdbsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘PDBSeqIdAsnRead’: objloc.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1374 | if (atp == NULL) | ^~ objloc.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1377 | pdbsip = PDBSeqIdNew(); | ^~~~~~ objloc.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1378 | if (pdbsip == NULL) | ^~ objloc.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1381 | if ((AsnReadVal(aip, oldtype, &av)) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘SeqLocAsnWrite’: objloc.c:1528:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1528 | if (atp == NULL) | ^~ objloc.c:1531:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1531 | if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqLocAsnRead’: objloc.c:1624:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1624 | if (atp == NULL) | ^~ objloc.c:1627:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1627 | anp = ValNodeNew(NULL); | ^~~ objloc.c:1628:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1628 | if (anp == NULL) | ^~ objloc.c:1631:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1631 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the CHOICE value (nothing) */ | ^~ objloc.c: In function ‘SeqLocMixAsnWrite’: objloc.c:1738:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1738 | if (atp == NULL) | ^~ objloc.c:1741:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1741 | if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqLocEquivAsnWrite’: objloc.c:1805:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1805 | if (atp == NULL) | ^~ objloc.c:1808:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1808 | if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqLocSetAsnWrite’: objloc.c:1873:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1873 | if (atp2 == NULL) | ^~ objloc.c:1876:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1876 | if (anp == NULL) { AsnNullValueMsg(aip, set); goto erret; } | ^~ objloc.c: In function ‘SeqLocSetAsnRead’: objloc.c:1940:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1940 | if (AsnReadVal(aip, atp, &av) <= 0) /* read END_STRUCT */ | ^~ objloc.c:1942:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1942 | if (first == NULL) | ^~ objloc.c: In function ‘SeqIntAsnWrite’: objloc.c:2022:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2022 | if (atp == NULL) | ^~ objloc.c:2025:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2025 | if (sip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqIntAsnRead’: objloc.c:2095:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2095 | if (atp == NULL) | ^~ objloc.c:2098:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2098 | sip = SeqIntNew(); | ^~~ objloc.c:2099:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2099 | if (sip == NULL) | ^~ objloc.c:2102:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2102 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘PackSeqIntAsnWrite’: objloc.c:2179:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2179 | if (atp == NULL) | ^~ objloc.c:2181:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2181 | oldsip = sip; | ^~~~~~ objloc.c:2185:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2185 | if (! AsnOpenStruct(aip, atp, (Pointer)oldsip)) | ^~ objloc.c:2187:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2187 | for ( ;sip != NULL; sip = sip->next) | ^~~ objloc.c: In function ‘SeqPntAsnWrite’: objloc.c:2309:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2309 | if (atp == NULL) | ^~ objloc.c:2312:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2312 | if (spp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqPntAsnRead’: objloc.c:2374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2374 | if (atp == NULL) | ^~ objloc.c:2377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2377 | spp = SeqPntNew(); | ^~~ objloc.c:2378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2378 | if (spp == NULL) | ^~ objloc.c:2381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2381 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘PackSeqPntAsnWrite’: objloc.c:2479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2479 | if (atp == NULL) | ^~ objloc.c:2482:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2482 | if (pspp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘PackSeqPntAsnRead’: objloc.c:2553:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2553 | if (atp == NULL) | ^~ objloc.c:2556:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2556 | pspp = PackSeqPntNew(); | ^~~~ objloc.c:2557:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2557 | if (pspp == NULL) | ^~ objloc.c:2560:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2560 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ objloc.c: In function ‘SeqBondAsnWrite’: objloc.c:2724:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2724 | if (atp == NULL) | ^~ objloc.c:2727:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2727 | if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objloc.c: In function ‘SeqBondAsnRead’: objloc.c:2776:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2776 | if (atp == NULL) | ^~ objloc.c:2779:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2779 | sbp = SeqBondNew(); | ^~~ objloc.c:2780:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2780 | if (sbp == NULL) | ^~ objloc.c:2783:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2783 | if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmedli.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmedli.h:80, from objmedli.c:104: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmedli.c: In function ‘MedlineMeshAsnRead’: objmedli.c:248:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 248 | if (atp == NULL) | ^~ objmedli.c:251:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 251 | mmp = MedlineMeshNew(); | ^~~ objmedli.c: In function ‘DocRefFree’: objmedli.c:1190:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1190 | if (drp == NULL) | ^~ objmedli.c:1193:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1193 | return (DocRefPtr)MemFree(drp); | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objpub.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objpub.h:70, from objpub.c:125: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objpub.c: In function ‘PubSetAsnRead’: objpub.c:831:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 831 | if (AsnReadVal(aip, settype, &av) <= 0) /* read START_STRUCT */ | ^~ objpub.c:834:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 834 | if (settype == PUB_SET_pub) | ^~ objpub.c:901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 901 | if (AsnReadVal(aip, settype, &av) <= 0) /* read END_STRUCT for SET OF */ | ^~ objpub.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 903 | if (anp == NULL) | ^~ objpub.c: In function ‘PubLabelUnique’: objpub.c:1360:17: warning: unused variable ‘pmid’ [-Wunused-variable] 1360 | Int4 muid = 0, pmid = 0; | ^~~~ objpub.c:1360:7: warning: unused variable ‘muid’ [-Wunused-variable] 1360 | Int4 muid = 0, pmid = 0; | ^~~~ objpub.c: In function ‘PubSetAsnRead’: objpub.c:876:16: warning: ‘func’ may be used uninitialized in this function [-Wmaybe-uninitialized] 876 | pnt = (* func)(aip, atp); | ~^~~~~~~~~~~~~~~~~ objpub.c:887:25: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 887 | cit->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objres.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from objres.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objscoremat.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objscoremat.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objscoremat.c: In function ‘PssmAsnRead’: objscoremat.c:93:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 93 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘PssmIntermediateDataAsnRead’: objscoremat.c:339:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 339 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘PssmFinalDataAsnRead’: objscoremat.c:548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 548 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘PssmParametersAsnRead’: objscoremat.c:766:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 766 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘PssmWithParametersAsnRead’: objscoremat.c:946:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 946 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘BlockPropertyAsnRead’: objscoremat.c:1113:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1113 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘CoreBlockAsnRead’: objscoremat.c:1289:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1289 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘LoopConstraintAsnRead’: objscoremat.c:1480:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1480 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘CoreDefAsnRead’: objscoremat.c:1646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1646 | AsnReadFunc func; | ^~~~ objscoremat.c: In function ‘FormatRpsDbParametersAsnRead’: objscoremat.c:1817:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1817 | AsnReadFunc func; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from objseq.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objseq.c: In function ‘LinkageEvidenceAsnRead’: objseq.c:1609:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1609 | AsnReadFunc func; | ^~~~ objseq.c: In function ‘SeqGapAsnRead’: objseq.c:1764:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1764 | AsnReadFunc func; | ^~~~ objseq.c: In function ‘SeqDescrAsnWriteExtra’: objseq.c:2035:48: warning: variable ‘had_anp’ set but not used [-Wunused-but-set-variable] 2035 | Boolean retval = FALSE, had_extra = FALSE, had_anp = FALSE; | ^~~~~~~ objseq.c: In function ‘AnnotIdAsnWrite’: objseq.c:4841:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 4841 | else | ^~~~ objseq.c:4843:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 4843 | break; | ^~~~~ objseq.c:4849:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 4849 | else | ^~~~ objseq.c:4851:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 4851 | break; | ^~~~~ objseq.c: In function ‘AnnotDescAsnWrite’: objseq.c:5226:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 5226 | else | ^~~~ objseq.c:5228:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 5228 | break; | ^~~~~ objseq.c: In function ‘BioseqAsnRead’: objseq.c:977:21: warning: ‘osp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 977 | else if (osp->load_by_id) /* don't load it */ | ~~~^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objblock.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objblock.h:70, from objblock.c:74: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objblock.c: In function ‘EMBLBlockFree’: objblock.c:900:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 900 | if (ebp == NULL) | ^~ objblock.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 903 | DateFree(ebp->creation_date); | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcode.c objcode.c:48:51: warning: "/*" within comment [-Wcomment] 48 | * environment variables to allow reading from data/*.val, replaced tabs in source code with spaces | In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objcode.h:64, from objcode.c:105: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objsset.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from objsset.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objsset.c: In function ‘BioseqSetFree’: objsset.c:363:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 363 | if (bsp == NULL) | ^~ objsset.c:366:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 366 | if (bsp->idx.parentptr == NULL || bsp->idx.parenttype == OBJ_SEQSUB) { | ^~ objsset.c: In function ‘SeqEntryFree’: objsset.c:878:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 878 | else if (sep->choice == 2) | ^~ objsset.c:881:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 881 | return (SeqEntryPtr)MemFree(sep); | ^~~~~~ objsset.c: In function ‘SeqEntryFreeComponents’: objsset.c:898:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 898 | else if (sep->choice == 2) | ^~ objsset.c:901:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 901 | return sep; | ^~~~~~ objsset.c: In function ‘SeqEntryAsnGet’: objsset.c:1075:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1075 | if (retcode == 1) /* just after a Bioseq */ | ^~ objsset.c:1077:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1077 | av.ptrvalue = (Pointer) osp; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objsub.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnsubmt.h:9, from objsub.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objsub.c: In function ‘SubmitAsnLoad’: objsub.c:341:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 341 | if (loaded) | ^~ objsub.c:344:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 344 | if (! SeqSetAsnLoad ()) | ^~ objsub.c:347:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 347 | if (AsnLoad()) | ^~ objsub.c:350:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 350 | ObjMgrTypeLoad(OBJ_SEQSUB, "Seq-submit", seqsubtypename, "Sequence Data Submission", | ^~~~~~~~~~~~~~ objsub.c: In function ‘SeqSubmitAsnWrite’: objsub.c:455:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 455 | if (atp == NULL) | ^~ objsub.c:458:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 458 | if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objsub.c:462:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 462 | if (! AsnOpenStruct(aip, atp, (Pointer)ssp)) | ^~ objsub.c:465:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 465 | if (! SubmitBlockAsnWrite(ssp->sub, aip, SEQ_SUBMIT_sub)) goto erret; | ^~ objsub.c: In function ‘SeqSubmitAsnRead’: objsub.c:539:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 539 | if (atp == NULL) | ^~ objsub.c:542:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 542 | ssp = SeqSubmitNew(); | ^~~ objsub.c:543:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 543 | if (ssp == NULL) | ^~ objsub.c:546:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 546 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ | ^~ objsub.c: In function ‘SubmitBlockAsnWrite’: objsub.c:682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 682 | if (atp == NULL) | ^~ objsub.c:685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 685 | if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objsub.c:689:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 689 | if (! AsnOpenStruct(aip, atp, (Pointer)sbp)) | ^~ objsub.c:692:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 692 | if (! ContactInfoAsnWrite(sbp->contact, aip, SUBMIT_BLOCK_contact)) | ^~ objsub.c: In function ‘SubmitBlockAsnRead’: objsub.c:770:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 770 | if (atp == NULL) | ^~ objsub.c:773:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 773 | oldatp = atp; | ^~~~~~ objsub.c:775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 775 | if (sbp == NULL) | ^~ objsub.c:778:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 778 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ | ^~ objsub.c: In function ‘ContactInfoAsnWrite’: objsub.c:942:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 942 | if (atp == NULL) | ^~ objsub.c:945:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 945 | if (cip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } | ^~ objsub.c:949:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 949 | if (! AsnOpenStruct(aip, atp, (Pointer)cip)) | ^~ objsub.c:952:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 952 | if (cip->name != NULL) | ^~ objsub.c: In function ‘ContactInfoAsnRead’: objsub.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1068 | if (atp == NULL) | ^~ objsub.c:1070:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1070 | oldatp = atp; | ^~~~~~ objsub.c:1073:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1073 | if (cip == NULL) | ^~ objsub.c:1076:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1076 | if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objprt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objprt.h:67, from objprt.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objprt.h:67, from objprt.c:81: objprt.c: In function ‘PrintFormTextAsnRead’: ../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ objprt.c:1086:19: note: ‘ptr’ was declared here 1086 | PrintFormTextPtr ptr; | ^~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objprt.h:67, from objprt.c:81: objprt.c: In function ‘PrintFormEnumAsnRead’: ../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ objprt.c:969:19: note: ‘ptr’ was declared here 969 | PrintFormEnumPtr ptr; | ^~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objprt.h:67, from objprt.c:81: objprt.c: In function ‘UserFormatAsnRead’: ../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ objprt.c:1192:16: note: ‘ptr’ was declared here 1192 | UserFormatPtr ptr; | ^~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objprt.h:67, from objprt.c:81: objprt.c: In function ‘PrintFormBooleanAsnRead’: ../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ objprt.c:853:22: note: ‘ptr’ was declared here 853 | PrintFormBooleanPtr ptr; | ^~~ objprt.c: In function ‘PrintFormAsnRead’: objprt.c:600:8: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 600 | vnp = PrintFormFree(vnp); | ^~~~~~~~~~~~~~~~~~ objprt.c: In function ‘PrintFormatAsnRead’: objprt.c:379:17: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 379 | PrintFormatPtr ptr; | ^~~ objprt.c: In function ‘PrintTemplateAsnRead’: objprt.c:152:14: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 152 | MemFree(ptr -> labelfrom); | ~~~~^~~~~~~~~~~~ objprt.c:206:19: note: ‘ptr’ was declared here 206 | PrintTemplatePtr ptr; | ^~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objprt.h:67, from objprt.c:81: objprt.c: In function ‘PrintFormBlockAsnRead’: ../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ objprt.c:707:20: note: ‘ptr’ was declared here 707 | PrintFormBlockPtr ptr; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objfdef.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objfeat.h:48, from ../include/objfdef.h:48, from objfdef.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objalignloc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objalignloc.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objalignloc.c: In function ‘AlignLocSetAsnRead’: objalignloc.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 69 | AsnReadFunc func; | ^~~~ objalignloc.c: In function ‘Loc_locFree’: objalignloc.c:196:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 196 | Pointer pnt; | ^~~ objalignloc.c: In function ‘AlignLocAsnRead’: objalignloc.c:233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 233 | AsnReadFunc func; | ^~~~ objalignloc.c:232:12: warning: unused variable ‘isError’ [-Wunused-variable] 232 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘Loc_locAsnRead’: objalignloc.c:313:12: warning: unused variable ‘isError’ [-Wunused-variable] 313 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignIdFree’: objalignloc.c:527:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 527 | Pointer pnt; | ^~~ objalignloc.c: In function ‘AlignIdAsnRead’: objalignloc.c:559:12: warning: unused variable ‘isError’ [-Wunused-variable] 559 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignBoxAsnRead’: objalignloc.c:750:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 750 | AsnReadFunc func; | ^~~~ objalignloc.c:749:12: warning: unused variable ‘isError’ [-Wunused-variable] 749 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignRowsAsnRead’: objalignloc.c:932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 932 | AsnReadFunc func; | ^~~~ objalignloc.c:931:12: warning: unused variable ‘isError’ [-Wunused-variable] 931 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignColumnsAsnRead’: objalignloc.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1096 | AsnReadFunc func; | ^~~~ objalignloc.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable] 1095 | Boolean isError = FALSE; | ^~~~~~~ objalignloc.c: In function ‘AlignIdAsnRead’: objalignloc.c:615:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 615 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objalignloc.c: In function ‘AlignLocAsnRead’: objalignloc.c:370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 370 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objalignloc.c:312:10: note: ‘choice’ was declared here 312 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtable.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtable.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objtable.c: In function ‘SeqTableColumnInfoAsnRead’: objtable.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objtable.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable] 86 | Boolean isError = FALSE; | ^~~~~~~ objtable.c: In function ‘SeqTableColumnAsnRead’: objtable.c:269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 269 | AsnReadFunc func; | ^~~~ objtable.c:268:12: warning: unused variable ‘isError’ [-Wunused-variable] 268 | Boolean isError = FALSE; | ^~~~~~~ objtable.c: In function ‘SeqTableAsnRead’: objtable.c:474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 474 | AsnReadFunc func; | ^~~~ objtable.c: In function ‘CommonStringTableAsnRead’: objtable.c:657:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 657 | AsnReadFunc func; | ^~~~ objtable.c: In function ‘CommonBytesTableAsnRead’: objtable.c:819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 819 | AsnReadFunc func; | ^~~~ objtable.c: In function ‘SeqTableSingleDataFree’: objtable.c:1225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1225 | Pointer pnt; | ^~~ objtable.c: In function ‘SeqTableSingleDataAsnRead’: objtable.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable] 1269 | Boolean isError = FALSE; | ^~~~~~~ objtable.c: In function ‘SeqTableMultiDataAsnRead’: objtable.c:1111:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1111 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtable.c: In function ‘SeqTableSingleDataAsnRead’: objtable.c:1354:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1354 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtable.c: In function ‘SeqTableSparseIndexAsnRead’: objtable.c:1559:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1559 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objpubme.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objpubme.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objpubme.c: In function ‘PubmedEntryAsnRead’: objpubme.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 89 | AsnReadFunc func; | ^~~~ objpubme.c: In function ‘PubmedUrlAsnRead’: objpubme.c:288:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 288 | AsnReadFunc func; | ^~~~ objpubme.c:287:12: warning: unused variable ‘isError’ [-Wunused-variable] 287 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmdrs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmdrs.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmdrs.c: In function ‘MedlarsEntryAsnRead’: objmdrs.c:85:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 85 | AsnReadFunc func; | ^~~~ objmdrs.c: In function ‘MedlarsRecordAsnRead’: objmdrs.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 259 | AsnReadFunc func; | ^~~~ objmdrs.c:258:12: warning: unused variable ‘isError’ [-Wunused-variable] 258 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objproj.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objproj.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objproj.c: In function ‘ProjectAsnRead’: objproj.c:116:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 116 | AsnReadFunc func; | ^~~~ objproj.c:115:12: warning: unused variable ‘isError’ [-Wunused-variable] 115 | Boolean isError = FALSE; | ^~~~~~~ objproj.c: In function ‘ProjectDescrAsnRead’: objproj.c:720:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 720 | AsnReadFunc func; | ^~~~ objproj.c: In function ‘ProjdescFree’: objproj.c:857:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 857 | Pointer pnt; | ^~~ objproj.c: In function ‘ProjdescAsnRead’: objproj.c:898:12: warning: unused variable ‘isError’ [-Wunused-variable] 898 | Boolean isError = FALSE; | ^~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: objproj.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objproj.c: In function ‘ProjdescAsnRead’: objproj.c:958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 958 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objproj.c: In function ‘ProjectItemAsnRead’: objproj.c:536:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 536 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objgbseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objgbseq.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objgbseq.c: In function ‘GBSetAsnRead’: objgbseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 69 | AsnReadFunc func; | ^~~~ objgbseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable] 66 | DataVal av; | ^~ objgbseq.c: In function ‘GBSeqAsnRead’: objgbseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 235 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBReferenceAsnRead’: objgbseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 742 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBCommentAsnRead’: objgbseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 983 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBStrucCommentAsnRead’: objgbseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1150 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBFeatureAsnRead’: objgbseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1321 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBFeatureSetAsnRead’: objgbseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1548 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBAltSeqDataAsnRead’: objgbseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1715 | AsnReadFunc func; | ^~~~ objgbseq.c: In function ‘GBXrefAsnRead’: objgbseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1882 | AsnReadFunc func; | ^~~~ objgbseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable] 1881 | Boolean isError = FALSE; | ^~~~~~~ objgbseq.c: In function ‘GBStrucCommentItemAsnRead’: objgbseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2053 | AsnReadFunc func; | ^~~~ objgbseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable] 2052 | Boolean isError = FALSE; | ^~~~~~~ objgbseq.c: In function ‘GBIntervalAsnRead’: objgbseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2233 | AsnReadFunc func; | ^~~~ objgbseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable] 2232 | Boolean isError = FALSE; | ^~~~~~~ objgbseq.c: In function ‘GBQualifierAsnRead’: objgbseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2447 | AsnReadFunc func; | ^~~~ objgbseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable] 2446 | Boolean isError = FALSE; | ^~~~~~~ objgbseq.c: In function ‘GBAltSeqItemAsnRead’: objgbseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2622 | AsnReadFunc func; | ^~~~ objgbseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable] 2621 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtseq.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objtseq.c: In function ‘TSeqAsnRead’: objtseq.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 89 | AsnReadFunc func; | ^~~~ objtseq.c: In function ‘TSeqSetAsnRead’: objtseq.c:325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 325 | AsnReadFunc func; | ^~~~ objtseq.c: In function ‘BioseqToTSeq’: objtseq.c:452:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable] 452 | Uint1 seqcode; | ^~~~~~~ objtseq.c: In function ‘BioseqToMiniTSeq’: objtseq.c:564:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable] 564 | Uint1 seqcode; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objinsdseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objinsdseq.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objinsdseq.c: In function ‘INSDSetAsnRead’: objinsdseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 69 | AsnReadFunc func; | ^~~~ objinsdseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable] 66 | DataVal av; | ^~ objinsdseq.c: In function ‘INSDSeqAsnRead’: objinsdseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 235 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDReferenceAsnRead’: objinsdseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 742 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDCommentAsnRead’: objinsdseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 983 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDStrucCommentAsnRead’: objinsdseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1150 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDFeatureAsnRead’: objinsdseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1321 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDFeatureSetAsnRead’: objinsdseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1548 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDAltSeqDataAsnRead’: objinsdseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1715 | AsnReadFunc func; | ^~~~ objinsdseq.c: In function ‘INSDXrefAsnRead’: objinsdseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1882 | AsnReadFunc func; | ^~~~ objinsdseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable] 1881 | Boolean isError = FALSE; | ^~~~~~~ objinsdseq.c: In function ‘INSDStrucCommentItemAsnRead’: objinsdseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2053 | AsnReadFunc func; | ^~~~ objinsdseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable] 2052 | Boolean isError = FALSE; | ^~~~~~~ objinsdseq.c: In function ‘INSDIntervalAsnRead’: objinsdseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2233 | AsnReadFunc func; | ^~~~ objinsdseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable] 2232 | Boolean isError = FALSE; | ^~~~~~~ objinsdseq.c: In function ‘INSDQualifierAsnRead’: objinsdseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2447 | AsnReadFunc func; | ^~~~ objinsdseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable] 2446 | Boolean isError = FALSE; | ^~~~~~~ objinsdseq.c: In function ‘INSDAltSeqItemAsnRead’: objinsdseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2622 | AsnReadFunc func; | ^~~~ objinsdseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable] 2621 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmacro.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmacro.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmacro.c: In function ‘AECRActionAsnRead’: objmacro.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objmacro.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable] 86 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseActionAsnRead’: objmacro.c:272:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 272 | AsnReadFunc func; | ^~~~ objmacro.c:271:12: warning: unused variable ‘isError’ [-Wunused-variable] 271 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MacroActionListAsnRead’: objmacro.c:478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 478 | AsnReadFunc func; | ^~~~ objmacro.c:475:12: warning: unused variable ‘av’ [-Wunused-variable] 475 | DataVal av; | ^~ objmacro.c: In function ‘SuspectRuleSetAsnRead’: objmacro.c:595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 595 | AsnReadFunc func; | ^~~~ objmacro.c:592:12: warning: unused variable ‘av’ [-Wunused-variable] 592 | DataVal av; | ^~ objmacro.c: In function ‘WordSubstitutionAsnRead’: objmacro.c:731:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 731 | AsnReadFunc func; | ^~~~ objmacro.c: In function ‘WordSubstitutionSetAsnRead’: objmacro.c:899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 899 | AsnReadFunc func; | ^~~~ objmacro.c:896:12: warning: unused variable ‘av’ [-Wunused-variable] 896 | DataVal av; | ^~ objmacro.c: In function ‘StringConstraintAsnRead’: objmacro.c:1045:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1045 | AsnReadFunc func; | ^~~~ objmacro.c:1044:12: warning: unused variable ‘isError’ [-Wunused-variable] 1044 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘StringConstraintSetAsnRead’: objmacro.c:1307:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1307 | AsnReadFunc func; | ^~~~ objmacro.c:1304:12: warning: unused variable ‘av’ [-Wunused-variable] 1304 | DataVal av; | ^~ objmacro.c: In function ‘LocationPosConstraintFree’: objmacro.c:1403:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1403 | Pointer pnt; | ^~~ objmacro.c: In function ‘LocationPosConstraintAsnRead’: objmacro.c:1432:12: warning: unused variable ‘isError’ [-Wunused-variable] 1432 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘LocationConstraintAsnRead’: objmacro.c:1633:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1633 | AsnReadFunc func; | ^~~~ objmacro.c:1632:12: warning: unused variable ‘isError’ [-Wunused-variable] 1632 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatQualLegalValAsnRead’: objmacro.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1849 | AsnReadFunc func; | ^~~~ objmacro.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable] 1848 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatQualLegalValChoiceFree’: objmacro.c:1979:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1979 | Pointer pnt; | ^~~ objmacro.c: In function ‘FeatQualLegalValChoiceAsnRead’: objmacro.c:2011:12: warning: unused variable ‘isError’ [-Wunused-variable] 2011 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatQualLegalSetAsnRead’: objmacro.c:2165:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2165 | AsnReadFunc func; | ^~~~ objmacro.c:2162:12: warning: unused variable ‘av’ [-Wunused-variable] 2162 | DataVal av; | ^~ objmacro.c: In function ‘FeatQualChoiceFree’: objmacro.c:2261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2261 | Pointer pnt; | ^~~ objmacro.c: In function ‘FeatQualChoiceAsnRead’: objmacro.c:2293:12: warning: unused variable ‘isError’ [-Wunused-variable] 2293 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatureFieldAsnRead’: objmacro.c:2474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2474 | AsnReadFunc func; | ^~~~ objmacro.c:2473:12: warning: unused variable ‘isError’ [-Wunused-variable] 2473 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatureFieldLegalAsnRead’: objmacro.c:2641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2641 | AsnReadFunc func; | ^~~~ objmacro.c:2640:12: warning: unused variable ‘isError’ [-Wunused-variable] 2640 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FeatureFieldPairAsnRead’: objmacro.c:2807:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2807 | AsnReadFunc func; | ^~~~ objmacro.c:2806:12: warning: unused variable ‘isError’ [-Wunused-variable] 2806 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RnaFeatTypeFree’: objmacro.c:2950:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2950 | Pointer pnt; | ^~~ objmacro.c: In function ‘RnaFeatTypeAsnRead’: objmacro.c:2982:12: warning: unused variable ‘isError’ [-Wunused-variable] 2982 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RnaQualAsnRead’: objmacro.c:3232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3232 | AsnReadFunc func; | ^~~~ objmacro.c:3231:12: warning: unused variable ‘isError’ [-Wunused-variable] 3231 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RnaQualPairAsnRead’: objmacro.c:3400:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3400 | AsnReadFunc func; | ^~~~ objmacro.c:3399:12: warning: unused variable ‘isError’ [-Wunused-variable] 3399 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualPairAsnRead’: objmacro.c:3576:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3576 | AsnReadFunc func; | ^~~~ objmacro.c:3575:12: warning: unused variable ‘isError’ [-Wunused-variable] 3575 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualChoiceFree’: objmacro.c:3704:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3704 | Pointer pnt; | ^~~ objmacro.c: In function ‘SourceQualChoiceAsnRead’: objmacro.c:3733:12: warning: unused variable ‘isError’ [-Wunused-variable] 3733 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualTextValAsnRead’: objmacro.c:3950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3950 | AsnReadFunc func; | ^~~~ objmacro.c:3949:12: warning: unused variable ‘isError’ [-Wunused-variable] 3949 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualValChoiceFree’: objmacro.c:4080:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 4080 | Pointer pnt; | ^~~ objmacro.c: In function ‘SourceQualValChoiceAsnRead’: objmacro.c:4112:12: warning: unused variable ‘isError’ [-Wunused-variable] 4112 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceQualValSetAsnRead’: objmacro.c:4310:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4310 | AsnReadFunc func; | ^~~~ objmacro.c:4307:12: warning: unused variable ‘av’ [-Wunused-variable] 4307 | DataVal av; | ^~ objmacro.c: In function ‘CDSGeneProtFieldPairAsnRead’: objmacro.c:4442:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4442 | AsnReadFunc func; | ^~~~ objmacro.c:4441:12: warning: unused variable ‘isError’ [-Wunused-variable] 4441 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoFieldFree’: objmacro.c:4570:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 4570 | Pointer pnt; | ^~~ objmacro.c: In function ‘MolinfoFieldAsnRead’: objmacro.c:4599:12: warning: unused variable ‘isError’ [-Wunused-variable] 4599 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoMoleculePairAsnRead’: objmacro.c:4826:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4826 | AsnReadFunc func; | ^~~~ objmacro.c:4825:12: warning: unused variable ‘isError’ [-Wunused-variable] 4825 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoTechniquePairAsnRead’: objmacro.c:4990:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4990 | AsnReadFunc func; | ^~~~ objmacro.c:4989:12: warning: unused variable ‘isError’ [-Wunused-variable] 4989 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoCompletednessPairAsnRead’: objmacro.c:5154:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5154 | AsnReadFunc func; | ^~~~ objmacro.c:5153:12: warning: unused variable ‘isError’ [-Wunused-variable] 5153 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoMolClassPairAsnRead’: objmacro.c:5318:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5318 | AsnReadFunc func; | ^~~~ objmacro.c:5317:12: warning: unused variable ‘isError’ [-Wunused-variable] 5317 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoTopologyPairAsnRead’: objmacro.c:5482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5482 | AsnReadFunc func; | ^~~~ objmacro.c:5481:12: warning: unused variable ‘isError’ [-Wunused-variable] 5481 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoStrandPairAsnRead’: objmacro.c:5646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5646 | AsnReadFunc func; | ^~~~ objmacro.c:5645:12: warning: unused variable ‘isError’ [-Wunused-variable] 5645 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoFieldPairFree’: objmacro.c:5774:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 5774 | Pointer pnt; | ^~~ objmacro.c: In function ‘MolinfoFieldPairAsnRead’: objmacro.c:5821:12: warning: unused variable ‘isError’ [-Wunused-variable] 5821 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoFieldListAsnRead’: objmacro.c:6015:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6015 | AsnReadFunc func; | ^~~~ objmacro.c:6012:12: warning: unused variable ‘av’ [-Wunused-variable] 6012 | DataVal av; | ^~ objmacro.c: In function ‘MolinfoFieldConstraintAsnRead’: objmacro.c:6149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6149 | AsnReadFunc func; | ^~~~ objmacro.c:6148:12: warning: unused variable ‘isError’ [-Wunused-variable] 6148 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘StructuredCommentFieldFree’: objmacro.c:6280:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 6280 | Pointer pnt; | ^~~ objmacro.c: In function ‘StructuredCommentFieldAsnRead’: objmacro.c:6312:12: warning: unused variable ‘isError’ [-Wunused-variable] 6312 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘StructuredCommentFieldPairAsnRead’: objmacro.c:6508:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6508 | AsnReadFunc func; | ^~~~ objmacro.c:6507:12: warning: unused variable ‘isError’ [-Wunused-variable] 6507 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘DBLinkFieldPairAsnRead’: objmacro.c:6678:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6678 | AsnReadFunc func; | ^~~~ objmacro.c:6677:12: warning: unused variable ‘isError’ [-Wunused-variable] 6677 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PubFieldConstraintAsnRead’: objmacro.c:6843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6843 | AsnReadFunc func; | ^~~~ objmacro.c:6842:12: warning: unused variable ‘isError’ [-Wunused-variable] 6842 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PubFieldSpecialConstraintTypeFree’: objmacro.c:6974:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 6974 | Pointer pnt; | ^~~ objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’: objmacro.c:7003:12: warning: unused variable ‘isError’ [-Wunused-variable] 7003 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PubFieldSpecialConstraintAsnRead’: objmacro.c:7220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 7220 | AsnReadFunc func; | ^~~~ objmacro.c:7219:12: warning: unused variable ‘isError’ [-Wunused-variable] 7219 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PublicationConstraintAsnRead’: objmacro.c:7389:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 7389 | AsnReadFunc func; | ^~~~ objmacro.c:7388:12: warning: unused variable ‘isError’ [-Wunused-variable] 7388 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SourceConstraintAsnRead’: objmacro.c:7571:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 7571 | AsnReadFunc func; | ^~~~ objmacro.c:7570:12: warning: unused variable ‘isError’ [-Wunused-variable] 7570 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CDSGeneProtPseudoConstraintAsnRead’: objmacro.c:7763:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 7763 | AsnReadFunc func; | ^~~~ objmacro.c:7762:12: warning: unused variable ‘isError’ [-Wunused-variable] 7762 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CDSGeneProtConstraintFieldFree’: objmacro.c:7891:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 7891 | Pointer pnt; | ^~~ objmacro.c: In function ‘CDSGeneProtConstraintFieldAsnRead’: objmacro.c:7920:12: warning: unused variable ‘isError’ [-Wunused-variable] 7920 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CDSGeneProtQualConstraintAsnRead’: objmacro.c:8095:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8095 | AsnReadFunc func; | ^~~~ objmacro.c:8094:12: warning: unused variable ‘isError’ [-Wunused-variable] 8094 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FieldConstraintAsnRead’: objmacro.c:8279:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 8279 | AsnReadFunc func; | ^~~~ objmacro.c:8278:12: warning: unused variable ‘isError’ [-Wunused-variable] 8278 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FieldTypeFree’: objmacro.c:8413:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 8413 | Pointer pnt; | ^~~ objmacro.c: In function ‘FieldTypeAsnRead’: objmacro.c:8457:12: warning: unused variable ‘isError’ [-Wunused-variable] 8457 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SequenceConstraintMolTypeConstraintFree’: objmacro.c:8666:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 8666 | Pointer pnt; | ^~~ objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’: objmacro.c:8695:12: warning: unused variable ‘isError’ [-Wunused-variable] 8695 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘QuantityConstraintFree’: objmacro.c:8875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 8875 | Pointer pnt; | ^~~ objmacro.c: In function ‘QuantityConstraintAsnRead’: objmacro.c:8904:12: warning: unused variable ‘isError’ [-Wunused-variable] 8904 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SequenceConstraintAsnRead’: objmacro.c:9104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9104 | AsnReadFunc func; | ^~~~ objmacro.c:9103:12: warning: unused variable ‘isError’ [-Wunused-variable] 9103 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TranslationConstraintAsnRead’: objmacro.c:9332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9332 | AsnReadFunc func; | ^~~~ objmacro.c:9331:12: warning: unused variable ‘isError’ [-Wunused-variable] 9331 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConstraintChoiceFree’: objmacro.c:9487:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 9487 | Pointer pnt; | ^~~ objmacro.c: In function ‘ConstraintChoiceAsnRead’: objmacro.c:9549:12: warning: unused variable ‘isError’ [-Wunused-variable] 9549 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConstraintChoiceSetAsnRead’: objmacro.c:9783:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 9783 | AsnReadFunc func; | ^~~~ objmacro.c:9780:12: warning: unused variable ‘av’ [-Wunused-variable] 9780 | DataVal av; | ^~ objmacro.c: In function ‘TextMarkerFree’: objmacro.c:9879:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 9879 | Pointer pnt; | ^~~ objmacro.c: In function ‘TextMarkerAsnRead’: objmacro.c:9911:12: warning: unused variable ‘isError’ [-Wunused-variable] 9911 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TextPortionAsnRead’: objmacro.c:10109:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10109 | AsnReadFunc func; | ^~~~ objmacro.c:10108:12: warning: unused variable ‘isError’ [-Wunused-variable] 10108 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FieldEditAsnRead’: objmacro.c:10328:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10328 | AsnReadFunc func; | ^~~~ objmacro.c:10327:12: warning: unused variable ‘isError’ [-Wunused-variable] 10327 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FieldPairTypeFree’: objmacro.c:10478:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 10478 | Pointer pnt; | ^~~ objmacro.c: In function ‘FieldPairTypeAsnRead’: objmacro.c:10528:12: warning: unused variable ‘isError’ [-Wunused-variable] 10528 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ApplyActionAsnRead’: objmacro.c:10747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10747 | AsnReadFunc func; | ^~~~ objmacro.c:10746:12: warning: unused variable ‘isError’ [-Wunused-variable] 10746 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘EditActionAsnRead’: objmacro.c:10927:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 10927 | AsnReadFunc func; | ^~~~ objmacro.c:10926:12: warning: unused variable ‘isError’ [-Wunused-variable] 10926 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TextTransformFree’: objmacro.c:11061:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 11061 | Pointer pnt; | ^~~ objmacro.c: In function ‘TextTransformAsnRead’: objmacro.c:11096:12: warning: unused variable ‘isError’ [-Wunused-variable] 11096 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TextTransformSetAsnRead’: objmacro.c:11269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11269 | AsnReadFunc func; | ^~~~ objmacro.c:11266:12: warning: unused variable ‘av’ [-Wunused-variable] 11266 | DataVal av; | ^~ objmacro.c: In function ‘ConvertActionAsnRead’: objmacro.c:11405:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11405 | AsnReadFunc func; | ^~~~ objmacro.c:11404:12: warning: unused variable ‘isError’ [-Wunused-variable] 11404 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CopyActionAsnRead’: objmacro.c:11600:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11600 | AsnReadFunc func; | ^~~~ objmacro.c:11599:12: warning: unused variable ‘isError’ [-Wunused-variable] 11599 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SwapActionAsnRead’: objmacro.c:11768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11768 | AsnReadFunc func; | ^~~~ objmacro.c:11767:12: warning: unused variable ‘isError’ [-Wunused-variable] 11767 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AECRParseActionAsnRead’: objmacro.c:11932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 11932 | AsnReadFunc func; | ^~~~ objmacro.c:11931:12: warning: unused variable ‘isError’ [-Wunused-variable] 11931 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveActionAsnRead’: objmacro.c:12151:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12151 | AsnReadFunc func; | ^~~~ objmacro.c:12150:12: warning: unused variable ‘isError’ [-Wunused-variable] 12150 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveOutsideActionAsnRead’: objmacro.c:12312:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12312 | AsnReadFunc func; | ^~~~ objmacro.c:12311:12: warning: unused variable ‘isError’ [-Wunused-variable] 12311 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ActionChoiceFree’: objmacro.c:12455:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 12455 | Pointer pnt; | ^~~ objmacro.c: In function ‘ActionChoiceAsnRead’: objmacro.c:12508:12: warning: unused variable ‘isError’ [-Wunused-variable] 12508 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseSrcOrgChoiceFree’: objmacro.c:12697:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 12697 | Pointer pnt; | ^~~ objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’: objmacro.c:12726:12: warning: unused variable ‘isError’ [-Wunused-variable] 12726 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseSrcOrgAsnRead’: objmacro.c:12911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 12911 | AsnReadFunc func; | ^~~~ objmacro.c:12910:12: warning: unused variable ‘isError’ [-Wunused-variable] 12910 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseSrcGeneralIdFree’: objmacro.c:13042:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 13042 | Pointer pnt; | ^~~ objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’: objmacro.c:13074:12: warning: unused variable ‘isError’ [-Wunused-variable] 13074 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseSrcFree’: objmacro.c:13232:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 13232 | Pointer pnt; | ^~~ objmacro.c: In function ‘ParseSrcAsnRead’: objmacro.c:13270:12: warning: unused variable ‘isError’ [-Wunused-variable] 13270 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseDstOrgAsnRead’: objmacro.c:13526:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 13526 | AsnReadFunc func; | ^~~~ objmacro.c:13525:12: warning: unused variable ‘isError’ [-Wunused-variable] 13525 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ParseDestFree’: objmacro.c:13657:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 13657 | Pointer pnt; | ^~~ objmacro.c: In function ‘ParseDestAsnRead’: objmacro.c:13695:12: warning: unused variable ‘isError’ [-Wunused-variable] 13695 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘LocationIntervalAsnRead’: objmacro.c:13905:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 13905 | AsnReadFunc func; | ^~~~ objmacro.c:13904:12: warning: unused variable ‘isError’ [-Wunused-variable] 13904 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘LocationChoiceFree’: objmacro.c:14033:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 14033 | Pointer pnt; | ^~~ objmacro.c: In function ‘LocationChoiceAsnRead’: objmacro.c:14065:12: warning: unused variable ‘isError’ [-Wunused-variable] 14065 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SequenceListAsnRead’: objmacro.c:14241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 14241 | AsnReadFunc func; | ^~~~ objmacro.c:14238:12: warning: unused variable ‘av’ [-Wunused-variable] 14238 | DataVal av; | ^~ objmacro.c: In function ‘SequenceListChoiceFree’: objmacro.c:14337:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 14337 | Pointer pnt; | ^~~ objmacro.c: In function ‘SequenceListChoiceAsnRead’: objmacro.c:14369:12: warning: unused variable ‘isError’ [-Wunused-variable] 14369 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ApplyFeatureActionAsnRead’: objmacro.c:14560:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 14560 | AsnReadFunc func; | ^~~~ objmacro.c:14559:12: warning: unused variable ‘isError’ [-Wunused-variable] 14559 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveFeatureActionAsnRead’: objmacro.c:14827:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 14827 | AsnReadFunc func; | ^~~~ objmacro.c:14826:12: warning: unused variable ‘isError’ [-Wunused-variable] 14826 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConvertFromCDSOptionsAsnRead’: objmacro.c:14994:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 14994 | AsnReadFunc func; | ^~~~ objmacro.c:14993:12: warning: unused variable ‘isError’ [-Wunused-variable] 14993 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConvertFeatureSrcOptionsFree’: objmacro.c:15131:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 15131 | Pointer pnt; | ^~~ objmacro.c: In function ‘ConvertFeatureSrcOptionsAsnRead’: objmacro.c:15163:12: warning: unused variable ‘isError’ [-Wunused-variable] 15163 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RegionTypeAsnRead’: objmacro.c:15332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 15332 | AsnReadFunc func; | ^~~~ objmacro.c:15331:12: warning: unused variable ‘isError’ [-Wunused-variable] 15331 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConvertFeatureDstOptionsFree’: objmacro.c:15451:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 15451 | Pointer pnt; | ^~~ objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’: objmacro.c:15486:12: warning: unused variable ‘isError’ [-Wunused-variable] 15486 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ConvertFeatureActionAsnRead’: objmacro.c:15702:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 15702 | AsnReadFunc func; | ^~~~ objmacro.c:15701:12: warning: unused variable ‘isError’ [-Wunused-variable] 15701 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘EditLocationStrandAsnRead’: objmacro.c:15911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 15911 | AsnReadFunc func; | ^~~~ objmacro.c:15910:12: warning: unused variable ‘isError’ [-Wunused-variable] 15910 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘Partial5SetActionAsnRead’: objmacro.c:16075:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 16075 | AsnReadFunc func; | ^~~~ objmacro.c:16074:12: warning: unused variable ‘isError’ [-Wunused-variable] 16074 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘Partial3SetActionAsnRead’: objmacro.c:16239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 16239 | AsnReadFunc func; | ^~~~ objmacro.c:16238:12: warning: unused variable ‘isError’ [-Wunused-variable] 16238 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘PartialBothSetActionAsnRead’: objmacro.c:16403:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 16403 | AsnReadFunc func; | ^~~~ objmacro.c:16402:12: warning: unused variable ‘isError’ [-Wunused-variable] 16402 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ExtendToFeatureAsnRead’: objmacro.c:16568:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 16568 | AsnReadFunc func; | ^~~~ objmacro.c:16567:12: warning: unused variable ‘isError’ [-Wunused-variable] 16567 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘LocationEditTypeFree’: objmacro.c:16708:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 16708 | Pointer pnt; | ^~~ objmacro.c: In function ‘LocationEditTypeAsnRead’: objmacro.c:16755:12: warning: unused variable ‘isError’ [-Wunused-variable] 16755 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘EditFeatureLocationActionAsnRead’: objmacro.c:17032:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17032 | AsnReadFunc func; | ^~~~ objmacro.c:17031:12: warning: unused variable ‘isError’ [-Wunused-variable] 17031 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoBlockAsnRead’: objmacro.c:17232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17232 | AsnReadFunc func; | ^~~~ objmacro.c:17231:12: warning: unused variable ‘isError’ [-Wunused-variable] 17231 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveDescriptorActionAsnRead’: objmacro.c:17415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17415 | AsnReadFunc func; | ^~~~ objmacro.c:17414:12: warning: unused variable ‘isError’ [-Wunused-variable] 17414 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AutodefActionAsnRead’: objmacro.c:17584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17584 | AsnReadFunc func; | ^~~~ objmacro.c: In function ‘FixPubCapsActionAsnRead’: objmacro.c:17758:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17758 | AsnReadFunc func; | ^~~~ objmacro.c:17757:12: warning: unused variable ‘isError’ [-Wunused-variable] 17757 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SortFieldsActionAsnRead’: objmacro.c:17963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 17963 | AsnReadFunc func; | ^~~~ objmacro.c:17962:12: warning: unused variable ‘isError’ [-Wunused-variable] 17962 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FixAuthorCapsAsnRead’: objmacro.c:18142:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 18142 | AsnReadFunc func; | ^~~~ objmacro.c:18141:12: warning: unused variable ‘isError’ [-Wunused-variable] 18141 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FixCapsActionFree’: objmacro.c:18261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 18261 | Pointer pnt; | ^~~ objmacro.c: In function ‘FixCapsActionAsnRead’: objmacro.c:18296:12: warning: unused variable ‘isError’ [-Wunused-variable] 18296 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FixFormatActionFree’: objmacro.c:18470:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 18470 | Pointer pnt; | ^~~ objmacro.c: In function ‘FixFormatActionAsnRead’: objmacro.c:18499:12: warning: unused variable ‘isError’ [-Wunused-variable] 18499 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveDuplicateFeatureActionAsnRead’: objmacro.c:18705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 18705 | AsnReadFunc func; | ^~~~ objmacro.c:18704:12: warning: unused variable ‘isError’ [-Wunused-variable] 18704 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘GeneXrefTypeAsnRead’: objmacro.c:18899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 18899 | AsnReadFunc func; | ^~~~ objmacro.c:18898:12: warning: unused variable ‘isError’ [-Wunused-variable] 18898 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘XrefTypeFree’: objmacro.c:19036:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 19036 | Pointer pnt; | ^~~ objmacro.c: In function ‘XrefTypeAsnRead’: objmacro.c:19068:12: warning: unused variable ‘isError’ [-Wunused-variable] 19068 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveXrefsActionAsnRead’: objmacro.c:19239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 19239 | AsnReadFunc func; | ^~~~ objmacro.c:19238:12: warning: unused variable ‘isError’ [-Wunused-variable] 19238 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MakeGeneXrefActionAsnRead’: objmacro.c:19410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 19410 | AsnReadFunc func; | ^~~~ objmacro.c:19409:12: warning: unused variable ‘isError’ [-Wunused-variable] 19409 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AuthorFixActionAsnRead’: objmacro.c:19578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 19578 | AsnReadFunc func; | ^~~~ objmacro.c:19577:12: warning: unused variable ‘isError’ [-Wunused-variable] 19577 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘UpdateSequencesActionAsnRead’: objmacro.c:19747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 19747 | AsnReadFunc func; | ^~~~ objmacro.c:19746:12: warning: unused variable ‘isError’ [-Wunused-variable] 19746 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CreateTSAIdsSrcFree’: objmacro.c:19877:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 19877 | Pointer pnt; | ^~~ objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’: objmacro.c:19909:12: warning: unused variable ‘isError’ [-Wunused-variable] 19909 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘CreateTSAIdsActionAsnRead’: objmacro.c:20092:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 20092 | AsnReadFunc func; | ^~~~ objmacro.c:20091:12: warning: unused variable ‘isError’ [-Wunused-variable] 20091 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AutofixActionAsnRead’: objmacro.c:20274:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 20274 | AsnReadFunc func; | ^~~~ objmacro.c:20273:12: warning: unused variable ‘isError’ [-Wunused-variable] 20273 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘FixSetsActionFree’: objmacro.c:20395:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 20395 | Pointer pnt; | ^~~ objmacro.c: In function ‘FixSetsActionAsnRead’: objmacro.c:20424:12: warning: unused variable ‘isError’ [-Wunused-variable] 20424 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TableMatchTypeFree’: objmacro.c:20582:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 20582 | Pointer pnt; | ^~~ objmacro.c: In function ‘TableMatchTypeAsnRead’: objmacro.c:20614:12: warning: unused variable ‘isError’ [-Wunused-variable] 20614 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘TableMatchAsnRead’: objmacro.c:20873:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 20873 | AsnReadFunc func; | ^~~~ objmacro.c:20872:12: warning: unused variable ‘isError’ [-Wunused-variable] 20872 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ApplyTableExtraDataFree’: objmacro.c:21004:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 21004 | Pointer pnt; | ^~~ objmacro.c: In function ‘ApplyTableExtraDataAsnRead’: objmacro.c:21033:12: warning: unused variable ‘isError’ [-Wunused-variable] 21033 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ApplyTableActionAsnRead’: objmacro.c:21210:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21210 | AsnReadFunc func; | ^~~~ objmacro.c:21209:12: warning: unused variable ‘isError’ [-Wunused-variable] 21209 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AddFileActionAsnRead’: objmacro.c:21411:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21411 | AsnReadFunc func; | ^~~~ objmacro.c:21410:12: warning: unused variable ‘isError’ [-Wunused-variable] 21410 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AddDescriptorListActionAsnRead’: objmacro.c:21582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21582 | AsnReadFunc func; | ^~~~ objmacro.c:21581:12: warning: unused variable ‘isError’ [-Wunused-variable] 21581 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RemoveSequencesActionAsnRead’: objmacro.c:21753:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21753 | AsnReadFunc func; | ^~~~ objmacro.c:21752:12: warning: unused variable ‘isError’ [-Wunused-variable] 21752 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘UpdateReplacedEcNumbersActionAsnRead’: objmacro.c:21911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 21911 | AsnReadFunc func; | ^~~~ objmacro.c:21910:12: warning: unused variable ‘isError’ [-Wunused-variable] 21910 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘RetranslateCdsActionAsnRead’: objmacro.c:22084:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 22084 | AsnReadFunc func; | ^~~~ objmacro.c:22083:12: warning: unused variable ‘isError’ [-Wunused-variable] 22083 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘AdjustFeaturesForGapsActionAsnRead’: objmacro.c:22239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 22239 | AsnReadFunc func; | ^~~~ objmacro.c:22238:12: warning: unused variable ‘isError’ [-Wunused-variable] 22238 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MacroActionChoiceFree’: objmacro.c:22412:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 22412 | Pointer pnt; | ^~~ objmacro.c: In function ‘MacroActionChoiceAsnRead’: objmacro.c:22522:12: warning: unused variable ‘isError’ [-Wunused-variable] 22522 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SearchFuncFree’: objmacro.c:23116:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 23116 | Pointer pnt; | ^~~ objmacro.c: In function ‘SearchFuncAsnRead’: objmacro.c:23154:12: warning: unused variable ‘isError’ [-Wunused-variable] 23154 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SimpleReplaceAsnRead’: objmacro.c:23425:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 23425 | AsnReadFunc func; | ^~~~ objmacro.c:23424:12: warning: unused variable ‘isError’ [-Wunused-variable] 23424 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ReplaceFuncFree’: objmacro.c:23564:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 23564 | Pointer pnt; | ^~~ objmacro.c: In function ‘ReplaceFuncAsnRead’: objmacro.c:23599:12: warning: unused variable ‘isError’ [-Wunused-variable] 23599 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘ReplaceRuleAsnRead’: objmacro.c:23781:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 23781 | AsnReadFunc func; | ^~~~ objmacro.c:23780:12: warning: unused variable ‘isError’ [-Wunused-variable] 23780 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘SuspectRuleAsnRead’: objmacro.c:23955:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 23955 | AsnReadFunc func; | ^~~~ objmacro.c:23954:12: warning: unused variable ‘isError’ [-Wunused-variable] 23954 | Boolean isError = FALSE; | ^~~~~~~ objmacro.c: In function ‘MolinfoFieldPairAsnRead’: objmacro.c:5883:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5883 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘TextTransformAsnRead’: objmacro.c:11149:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11149 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’: objmacro.c:13133:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13133 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘StructuredCommentFieldAsnRead’: objmacro.c:6371:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6371 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FixSetsActionAsnRead’: objmacro.c:20483:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 20483 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ConstraintChoiceAsnRead’: objmacro.c:9631:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9631 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FixFormatActionAsnRead’: objmacro.c:18565:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 18565 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FixCapsActionAsnRead’: objmacro.c:18363:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 18363 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘SourceQualChoiceAsnRead’: objmacro.c:3806:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3806 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘SourceQualValChoiceAsnRead’: objmacro.c:4182:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4182 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FieldTypeAsnRead’: objmacro.c:8543:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8543 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘MolinfoFieldAsnRead’: objmacro.c:4679:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4679 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘MacroActionChoiceAsnRead’: objmacro.c:22829:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 22829 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘LocationPosConstraintAsnRead’: objmacro.c:1491:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1491 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FeatQualChoiceAsnRead’: objmacro.c:2342:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2342 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘RnaFeatTypeAsnRead’: objmacro.c:3076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3076 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’: objmacro.c:7076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7076 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’: objmacro.c:8768:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8768 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘QuantityConstraintAsnRead’: objmacro.c:8963:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8963 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘TextMarkerAsnRead’: objmacro.c:9970:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9970 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘FieldPairTypeAsnRead’: objmacro.c:10594:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10594 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ActionChoiceAsnRead’: objmacro.c:12578:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12578 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’: objmacro.c:12778:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12778 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ParseSrcAsnRead’: objmacro.c:13365:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13365 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ParseDestAsnRead’: objmacro.c:13762:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 13762 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘LocationChoiceAsnRead’: objmacro.c:14121:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 14121 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘SequenceListChoiceAsnRead’: objmacro.c:14418:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 14418 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’: objmacro.c:15556:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 15556 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘LocationEditTypeAsnRead’: objmacro.c:16859:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16859 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’: objmacro.c:19958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 19958 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘TableMatchTypeAsnRead’: objmacro.c:20712:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 20712 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘SearchFuncAsnRead’: objmacro.c:23259:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23259 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function ‘ReplaceFuncAsnRead’: objmacro.c:23648:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23648 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objent2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objent2.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objent2.c: In function ‘Entrez2IdListAsnRead’: objent2.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objent2.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable] 86 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2BooleanExpAsnRead’: objent2.c:277:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 277 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2BooleanElementFree’: objent2.c:416:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 416 | Pointer pnt; | ^~~ objent2.c: In function ‘Entrez2BooleanElementAsnRead’: objent2.c:457:12: warning: unused variable ‘isError’ [-Wunused-variable] 457 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2LimitsAsnRead’: objent2.c:666:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 666 | AsnReadFunc func; | ^~~~ objent2.c:665:12: warning: unused variable ‘isError’ [-Wunused-variable] 665 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2BooleanTermAsnRead’: objent2.c:844:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 844 | AsnReadFunc func; | ^~~~ objent2.c:843:12: warning: unused variable ‘isError’ [-Wunused-variable] 843 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2RequestAsnRead’: objent2.c:1041:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1041 | AsnReadFunc func; | ^~~~ objent2.c:1040:12: warning: unused variable ‘isError’ [-Wunused-variable] 1040 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘E2RequestFree’: objent2.c:1203:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1203 | Pointer pnt; | ^~~ objent2.c: In function ‘E2RequestAsnRead’: objent2.c:1256:12: warning: unused variable ‘isError’ [-Wunused-variable] 1256 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2EvalBooleanAsnRead’: objent2.c:1493:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1493 | AsnReadFunc func; | ^~~~ objent2.c:1492:12: warning: unused variable ‘isError’ [-Wunused-variable] 1492 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2TermQueryAsnRead’: objent2.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1670 | AsnReadFunc func; | ^~~~ objent2.c:1669:12: warning: unused variable ‘isError’ [-Wunused-variable] 1669 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2TermPosAsnRead’: objent2.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1849 | AsnReadFunc func; | ^~~~ objent2.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable] 1848 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2HierQueryAsnRead’: objent2.c:2036:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2036 | AsnReadFunc func; | ^~~~ objent2.c:2035:12: warning: unused variable ‘isError’ [-Wunused-variable] 2035 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2GetLinksAsnRead’: objent2.c:2224:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2224 | AsnReadFunc func; | ^~~~ objent2.c:2223:12: warning: unused variable ‘isError’ [-Wunused-variable] 2223 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2IdAsnRead’: objent2.c:2419:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2419 | AsnReadFunc func; | ^~~~ objent2.c:2418:12: warning: unused variable ‘isError’ [-Wunused-variable] 2418 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2DtFilterAsnRead’: objent2.c:2584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2584 | AsnReadFunc func; | ^~~~ objent2.c:2583:12: warning: unused variable ‘isError’ [-Wunused-variable] 2583 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2ReplyAsnRead’: objent2.c:2762:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2762 | AsnReadFunc func; | ^~~~ objent2.c:2761:12: warning: unused variable ‘isError’ [-Wunused-variable] 2761 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘E2ReplyFree’: objent2.c:2935:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2935 | Pointer pnt; | ^~~ objent2.c: In function ‘E2ReplyAsnRead’: objent2.c:2991:12: warning: unused variable ‘isError’ [-Wunused-variable] 2991 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2InfoAsnRead’: objent2.c:3237:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3237 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2BooleanReplyAsnRead’: objent2.c:3409:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3409 | AsnReadFunc func; | ^~~~ objent2.c:3408:12: warning: unused variable ‘isError’ [-Wunused-variable] 3408 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2DocsumListAsnRead’: objent2.c:3587:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3587 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2TermListAsnRead’: objent2.c:3749:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3749 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2HierNodeAsnRead’: objent2.c:3922:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3922 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2LinkSetAsnRead’: objent2.c:4122:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4122 | AsnReadFunc func; | ^~~~ objent2.c:4121:12: warning: unused variable ‘isError’ [-Wunused-variable] 4121 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2LinkCountListAsnRead’: objent2.c:4299:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4299 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2DbInfoAsnRead’: objent2.c:4466:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4466 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2FieldInfoAsnRead’: objent2.c:4706:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4706 | AsnReadFunc func; | ^~~~ objent2.c:4705:12: warning: unused variable ‘isError’ [-Wunused-variable] 4705 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2LinkInfoAsnRead’: objent2.c:4950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4950 | AsnReadFunc func; | ^~~~ objent2.c:4949:12: warning: unused variable ‘isError’ [-Wunused-variable] 4949 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2DocsumFieldInfoAsnRead’: objent2.c:5149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5149 | AsnReadFunc func; | ^~~~ objent2.c:5148:12: warning: unused variable ‘isError’ [-Wunused-variable] 5148 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2DocsumAsnRead’: objent2.c:5325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5325 | AsnReadFunc func; | ^~~~ objent2.c: In function ‘Entrez2DocsumDataAsnRead’: objent2.c:5488:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5488 | AsnReadFunc func; | ^~~~ objent2.c:5487:12: warning: unused variable ‘isError’ [-Wunused-variable] 5487 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2TermAsnRead’: objent2.c:5655:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5655 | AsnReadFunc func; | ^~~~ objent2.c:5654:12: warning: unused variable ‘isError’ [-Wunused-variable] 5654 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2LinkCountAsnRead’: objent2.c:5838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5838 | AsnReadFunc func; | ^~~~ objent2.c:5837:12: warning: unused variable ‘isError’ [-Wunused-variable] 5837 | Boolean isError = FALSE; | ^~~~~~~ objent2.c: In function ‘Entrez2BooleanElementAsnRead’: objent2.c:524:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 524 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objent2.c: In function ‘E2RequestAsnRead’: objent2.c:1333:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1333 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objent2.c: In function ‘E2ReplyAsnRead’: objent2.c:3075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3075 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ent2api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ent2api.h:45, from ent2api.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pmfapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from pmfapi.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pmfapi.c:2813:24: warning: ‘SortByInt4’ defined but not used [-Wunused-function] 2813 | static int LIBCALLBACK SortByInt4 (VoidPtr vp1, VoidPtr vp2) | ^~~~~~~~~~ pmfapi.c: In function ‘ConfirmAccStrInSep’: pmfapi.c:1314:3: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1314 | SeqIdFree (tmp); | ^~~~~~~~~~~~~~~ pmfapi.c: In function ‘PubMedSynchronousQuery’: pmfapi.c:1224:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1224 | printf ("PubMedWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘PubSeqSynchronousQueryEx’: pmfapi.c:1479:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1479 | printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘PubSeqSynchronousQueryTI’: pmfapi.c:1663:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1663 | printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘PubSeqSynchronousQuerySRA’: pmfapi.c:1744:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1744 | printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘GiRevHistSynchronousQuery’: pmfapi.c:1817:61: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1817 | printf ("GiRevHistWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘GiAccVerSynchronousQuery’: pmfapi.c:1869:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1869 | printf ("GiAccVerWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘AccnRevHistSynchronousQuery’: pmfapi.c:1920:63: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1920 | printf ("AccnRevHistWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘GiSeqIdSetSynchronousQuery’: pmfapi.c:1971:62: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1971 | printf ("GiSeqIdSetWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function ‘AccnListSynchronousQuery’: pmfapi.c:2021:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021 | printf ("AccnListWaitForReply %ld\n", (long) (stoptime - starttime)); | ~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtax3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtax3.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objtax3.c: In function ‘Taxon3RequestAsnRead’: objtax3.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 86 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘T3RequestFree’: objtax3.c:200:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 200 | Pointer pnt; | ^~~ objtax3.c: In function ‘SequenceOfIntAsnRead’: objtax3.c:418:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 418 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘Taxon3ReplyAsnRead’: objtax3.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 547 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘T3ReplyFree’: objtax3.c:661:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 661 | Pointer pnt; | ^~~ objtax3.c: In function ‘T3ErrorAsnRead’: objtax3.c:872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 872 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘T3DataAsnRead’: objtax3.c:1072:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1072 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘Value_valueFree’: objtax3.c:1253:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1253 | Pointer pnt; | ^~~ objtax3.c: In function ‘T3StatusFlagsAsnRead’: objtax3.c:1283:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1283 | AsnReadFunc func; | ^~~~ objtax3.c: In function ‘T3RefreshFlagsAsnRead’: objtax3.c:1608:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1608 | AsnReadFunc func; | ^~~~ In file included from ../include/strimprt.h:72, from objtax3.c:5: objtax3.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from objtax3.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from objtax3.c:5: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from objtax3.c:5: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objtax3.c: In function ‘T3ReplyAsnRead’: objtax3.c:741:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 741 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtax3.c: In function ‘T3StatusFlagsAsnRead’: objtax3.c:1421:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1421 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtax3.c:1362:10: note: ‘choice’ was declared here 1362 | Uint1 choice; | ^~~~~~ objtax3.c: In function ‘T3RequestAsnRead’: objtax3.c:297:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 297 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tax3api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from tax3api.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ tax3api.c: In function ‘Tax3SynchronousQuery’: tax3api.c:189:27: warning: variable ‘t3’ set but not used [-Wunused-but-set-variable] 189 | time_t t1, t2, t3; | ^~ tax3api.c: In function ‘CheckSuggestedFixes’: tax3api.c:1030:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable] 1030 | T3ErrorPtr tep; | ^~~ tax3api.c: In function ‘TryNewSuggestedFixes’: tax3api.c:1142:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable] 1142 | T3ErrorPtr tep; | ^~~ tax3api.c: In function ‘RemoveSpeciesSpecific’: tax3api.c:1398:13: warning: unused variable ‘cp’ [-Wunused-variable] 1398 | CharPtr cp; | ^~ At top level: tax3api.c:3399:13: warning: ‘AddBioSourcesToChecklist’ defined but not used [-Wunused-function] 3399 | static void AddBioSourcesToChecklist (ValNodePtr biop_list, ValNodePtr check_list) | ^~~~~~~~~~~~~~~~~~~~~~~~ tax3api.c:2699:16: warning: ‘MatchesGenBankSynonym’ defined but not used [-Wunused-function] 2699 | static Boolean MatchesGenBankSynonym (CharPtr txt, OrgRefPtr response_org) | ^~~~~~~~~~~~~~~~~~~~~ tax3api.c:2682:16: warning: ‘MatchesSynonym’ defined but not used [-Wunused-function] 2682 | static Boolean MatchesSynonym (CharPtr txt, OrgRefPtr response_org) | ^~~~~~~~~~~~~~ tax3api.c:2273:16: warning: ‘EndsWithSp’ defined but not used [-Wunused-function] 2273 | static Boolean EndsWithSp (CharPtr str) | ^~~~~~~~~~ tax3api.c:990:19: warning: ‘MakeTaxFixRequestList’ defined but not used [-Wunused-function] 990 | static ValNodePtr MakeTaxFixRequestList (ValNodePtr biop_list) | ^~~~~~~~~~~~~~~~~~~~~ tax3api.c:362:16: warning: ‘HasMisspellingFlag’ defined but not used [-Wunused-function] 362 | static Boolean HasMisspellingFlag (T3DataPtr t) | ^~~~~~~~~~~~~~~~~~ tax3api.c:298:13: warning: ‘SaveTaxon3Request’ defined but not used [-Wunused-function] 298 | static void SaveTaxon3Request (Taxon3RequestPtr t3rp, CharPtr path) | ^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objegkludge.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objegkludge.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objentgene.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objentgene.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objentgene.c: In function ‘EntrezgeneAsnRead’: objentgene.c:103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 103 | AsnReadFunc func; | ^~~~ objentgene.c: In function ‘EntrezgeneSetAsnRead’: objentgene.c:412:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 412 | AsnReadFunc func; | ^~~~ objentgene.c:409:12: warning: unused variable ‘av’ [-Wunused-variable] 409 | DataVal av; | ^~ objentgene.c: In function ‘GeneTrackAsnRead’: objentgene.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 547 | AsnReadFunc func; | ^~~~ objentgene.c: In function ‘GeneCommentaryAsnRead’: objentgene.c:768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 768 | AsnReadFunc func; | ^~~~ objentgene.c: In function ‘Method_methodFree’: objentgene.c:1073:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1073 | Pointer pnt; | ^~~ objentgene.c: In function ‘MapsAsnRead’: objentgene.c:1104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1104 | AsnReadFunc func; | ^~~~ objentgene.c:1103:12: warning: unused variable ‘isError’ [-Wunused-variable] 1103 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘Method_methodAsnRead’: objentgene.c:1184:12: warning: unused variable ‘isError’ [-Wunused-variable] 1184 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘GeneSourceAsnRead’: objentgene.c:1426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1426 | AsnReadFunc func; | ^~~~ objentgene.c:1425:12: warning: unused variable ‘isError’ [-Wunused-variable] 1425 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘XtraTermsAsnRead’: objentgene.c:1641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1641 | AsnReadFunc func; | ^~~~ objentgene.c:1640:12: warning: unused variable ‘isError’ [-Wunused-variable] 1640 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘OtherSourceAsnRead’: objentgene.c:1812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1812 | AsnReadFunc func; | ^~~~ objentgene.c:1811:12: warning: unused variable ‘isError’ [-Wunused-variable] 1811 | Boolean isError = FALSE; | ^~~~~~~ objentgene.c: In function ‘MapsAsnRead’: objentgene.c:1236:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1236 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objentgene.c:1183:10: note: ‘choice’ was declared here 1183 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmla2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmla2.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmla2.c: In function ‘Mla2RequestFree’: objmla2.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 49 | Pointer pnt; | ^~~ objmla2.c: In function ‘Mla22RequestAsnRead’: objmla2.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable] 96 | Boolean isError = FALSE; | ^~~~~~~ objmla2.c: In function ‘TitleMsg2AsnRead’: objmla2.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 447 | AsnReadFunc func; | ^~~~ objmla2.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable] 446 | Boolean isError = FALSE; | ^~~~~~~ objmla2.c: In function ‘TitleMsgList2AsnRead’: objmla2.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 613 | AsnReadFunc func; | ^~~~ objmla2.c: In function ‘Mla22RequestAsnRead’: objmla2.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 249 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmla2.c: In function ‘Mla2BackAsnRead’: objmla2.c:904:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 904 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mla2api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/mla2api.h:45, from mla2api.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF qblastapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from qblastapi.c:123: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ qblastapi.c: In function ‘SecondQBlastCallback’: qblastapi.c:262:15: warning: variable ‘waiting’ set but not used [-Wunused-but-set-variable] 262 | Boolean waiting = FALSE; | ^~~~~~~ qblastapi.c: In function ‘BLASTGetSeqAnnotByRIDEx’: qblastapi.c:826:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 826 | EIO_Status status; | ^~~~~~ qblastapi.c: In function ‘BLASTGetQueryBioseqByRIDEx’: qblastapi.c:871:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 871 | EIO_Status status; | ^~~~~~ qblastapi.c: In function ‘QBlastCheckQueue’: qblastapi.c:688:36: warning: ‘&FORMAT_OBJECT=Alignment&FOR...’ directive writing 43 bytes into a region of size between 5 and 68 [-Wformat-overflow=] 688 | sprintf (str, "CMD=Get&RID=%s&FORMAT_OBJECT=Alignment&FORMAT_TYPE=ASN.1\n", curr->rid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from qblastapi.c:123: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 56 and 119 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vecscnapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from vecscnapi.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmim.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmim.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmim.c: In function ‘MimSetAsnRead’: objmim.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 86 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimDateAsnRead’: objmim.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 248 | AsnReadFunc func; | ^~~~ objmim.c:247:12: warning: unused variable ‘isError’ [-Wunused-variable] 247 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimEntryAsnRead’: objmim.c:448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 448 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimCitAsnRead’: objmim.c:909:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 909 | AsnReadFunc func; | ^~~~ objmim.c:908:12: warning: unused variable ‘isError’ [-Wunused-variable] 908 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimTextAsnRead’: objmim.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1096 | AsnReadFunc func; | ^~~~ objmim.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable] 1095 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimEditItemAsnRead’: objmim.c:1276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1276 | AsnReadFunc func; | ^~~~ objmim.c:1275:12: warning: unused variable ‘isError’ [-Wunused-variable] 1275 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimAllelicVariantAsnRead’: objmim.c:1448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1448 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimIndexTermAsnRead’: objmim.c:1640:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1640 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimReferenceAsnRead’: objmim.c:1819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1819 | AsnReadFunc func; | ^~~~ objmim.c: In function ‘MimLinkAsnRead’: objmim.c:2195:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2195 | AsnReadFunc func; | ^~~~ objmim.c:2194:12: warning: unused variable ‘isError’ [-Wunused-variable] 2194 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimAuthorAsnRead’: objmim.c:2369:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2369 | AsnReadFunc func; | ^~~~ objmim.c:2368:12: warning: unused variable ‘isError’ [-Wunused-variable] 2368 | Boolean isError = FALSE; | ^~~~~~~ objmim.c: In function ‘MimPageAsnRead’: objmim.c:2535:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2535 | AsnReadFunc func; | ^~~~ objmim.c:2534:12: warning: unused variable ‘isError’ [-Wunused-variable] 2534 | Boolean isError = FALSE; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objvalid.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objvalid.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objvalid.c: In function ‘FieldRuleAsnRead’: objvalid.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 88 | AsnReadFunc func; | ^~~~ objvalid.c:87:12: warning: unused variable ‘isError’ [-Wunused-variable] 87 | Boolean isError = FALSE; | ^~~~~~~ objvalid.c: In function ‘FieldSetAsnRead’: objvalid.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 259 | AsnReadFunc func; | ^~~~ objvalid.c:256:12: warning: unused variable ‘av’ [-Wunused-variable] 256 | DataVal av; | ^~ objvalid.c: In function ‘DependentFieldRuleAsnRead’: objvalid.c:396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 396 | AsnReadFunc func; | ^~~~ objvalid.c:395:12: warning: unused variable ‘isError’ [-Wunused-variable] 395 | Boolean isError = FALSE; | ^~~~~~~ objvalid.c: In function ‘DependentFieldSetAsnRead’: objvalid.c:582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 582 | AsnReadFunc func; | ^~~~ objvalid.c:579:12: warning: unused variable ‘av’ [-Wunused-variable] 579 | DataVal av; | ^~ objvalid.c: In function ‘CommentRuleAsnRead’: objvalid.c:721:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 721 | AsnReadFunc func; | ^~~~ objvalid.c:720:12: warning: unused variable ‘isError’ [-Wunused-variable] 720 | Boolean isError = FALSE; | ^~~~~~~ objvalid.c: In function ‘CommentSetAsnRead’: objvalid.c:926:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 926 | AsnReadFunc func; | ^~~~ objvalid.c:923:12: warning: unused variable ‘av’ [-Wunused-variable] 923 | DataVal av; | ^~ objvalid.c: In function ‘PhraseListAsnRead’: objvalid.c:1043:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1043 | AsnReadFunc func; | ^~~~ objvalid.c:1040:12: warning: unused variable ‘av’ [-Wunused-variable] 1040 | DataVal av; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mimapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mimapi.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cddapi.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqport.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from seqport.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqport.c: In function ‘productLoc_to_locationLoc’: seqport.c:4260:13: warning: variable ‘is_cdregion’ set but not used [-Wunused-but-set-variable] 4260 | Boolean is_cdregion = FALSE; | ^~~~~~~~~~~ seqport.c: In function ‘NaLocFromNaInterval’: seqport.c:4590:8: warning: variable ‘p_end_pos’ set but not used [-Wunused-but-set-variable] 4590 | Int4 p_end_pos; /*the end of the product sequence in the current loc*/ | ^~~~~~~~~ seqport.c: In function ‘dnaLoc_to_aaLoc’: seqport.c:4706:18: warning: variable ‘cds_right’ set but not used [-Wunused-but-set-variable] 4706 | Int4 cds_left, cds_right; | ^~~~~~~~~ seqport.c:4706:8: warning: variable ‘cds_left’ set but not used [-Wunused-but-set-variable] 4706 | Int4 cds_left, cds_right; | ^~~~~~~~ seqport.c: In function ‘DeltaRevComp’: seqport.c:5388:21: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable] 5388 | DeltaSeqPtr dsp, dspnext; | ^~~~~~~ seqport.c: In function ‘SeqSearchEnterNucWord’: seqport.c:6943:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable] 6943 | Int2 next, patLen, state; | ^~~~~~ seqport.c: In function ‘ProtSearchEnterProtWord’: seqport.c:7817:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable] 7817 | Int2 next, patLen, state; | ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from seqport.c:62: seqport.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sequtil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from sequtil.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequtil.c: In function ‘GetPointsForLeftAndRightOffsets’: sequtil.c:7994:11: warning: variable ‘first_strand’ set but not used [-Wunused-but-set-variable] 7994 | Uint1 first_strand, last_strand; | ^~~~~~~~~~~~ sequtil.c: In function ‘SeqPointWriteEx’: sequtil.c:8532:15: warning: variable ‘fuzzlen’ set but not used [-Wunused-but-set-variable] 8532 | Int4 fuzzlen, id_len; | ^~~~~~~ sequtil.c: In function ‘TaxNameFromCommon’: sequtil.c:8687:42: warning: missing braces around initializer [-Wmissing-braces] 8687 | static Nlm_TaxCommon taxcommon[40] = { | ^ 8688 | "Chinese hamsters", "Cricetulus sp." | { 8689 | ,"Syrian golden hamsters", "Mesocricetus auratus" | }{ 8690 | ,"Syrian hamsters", "Mesocricetus sp." | }{ 8691 | ,"barley", "Hordeum sp." | }{ 8692 | ,"carrots", "Daucus sp." | }{ 8693 | ,"cats", "Felis sp." | }{ 8694 | ,"cattles", "Bos sp." | }{ 8695 | ,"chickens", "Gallus sp." | }{ 8696 | ,"chimpanzees", "Pan sp." | }{ 8697 | ,"chimpanzes", "Pan sp." | }{ 8698 | ,"corn", "Zea sp." | }{ 8699 | ,"cucumber", "Cucumis sativus" | }{ 8700 | ,"dogs", "Canis sp." | }{ 8701 | ,"goats", "Capra sp." | }{ 8702 | ,"gorillas", "Gorilla sp." | }{ 8703 | ,"guinea pigs", "Cavia sp." | }{ 8704 | ,"hamsters", "Cricetidae gen. sp." | }{ 8705 | ,"horses", "Equus sp." | }{ 8706 | ,"humans", "Homo sapiens" | }{ 8707 | ,"maize", "Zea sp." | }{ 8708 | ,"mice", "Mus sp." | }{ 8709 | ,"mouse", "Mus sp." | }{ 8710 | ,"peas", "Pisum sp." | }{ 8711 | ,"potatoes", "Solanum sp." | }{ 8712 | ,"potato", "Solanum sp." | }{ 8713 | ,"quails", "Phasianidae gen. sp." | }{ 8714 | ,"rabbits", "Oryctolagus sp." | }{ 8715 | ,"rats", "Rattus sp." | }{ 8716 | ,"rices", "Oryza sp." | }{ 8717 | ,"sheeps", "Ovis sp." | }{ 8718 | ,"sorghums", "Sorghum sp." | }{ 8719 | ,"soybeans", "Glycine sp." | }{ 8720 | ,"spinach", "Spinacia sp." | }{ 8721 | ,"swine", "Sus sp." | }{ 8722 | ,"tobacco", "Nicotiania sp." | }{ 8723 | ,"tomatoes", "Lycopersicon sp." | }{ 8724 | ,"tomato", "Lycopersicon sp." | }{ 8725 | ,"turkeys", "Meleagris sp." | }{ 8726 | ,"wheat", "Triticum sp." | }{ 8727 | ,"zebrafish", "Brachydanio sp." | }{ 8728 | }; | } sequtil.c: In function ‘GetBestScoreAndEvalueFromScorePtr’: sequtil.c:9510:48: warning: variable ‘sum_set’ set but not used [-Wunused-but-set-variable] 9510 | Boolean score_set=FALSE, evalue_set=FALSE, sum_set=FALSE, bit_set=FALSE; | ^~~~~~~ sequtil.c: In function ‘SeqIdFromAccessionEx’: sequtil.c:10110:38: warning: variable ‘sip2’ set but not used [-Wunused-but-set-variable] 10110 | SeqIdPtr sip2; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prtutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objprt.h:67, from ../include/prtutil.h:69, from prtutil.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ prtutil.c: In function ‘StdFormatPrint’: prtutil.c:1422:10: warning: unused variable ‘ptr’ [-Wunused-variable] 1422 | CharPtr ptr = NULL; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF simple.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/simple.h:63, from simple.c:68: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from simple.c:69: ../include/all.h:7293: warning: "RNA_QUAL" redefined 7293 | #define RNA_QUAL &at[2254] | ../include/all.h:5823: note: this is the location of the previous definition 5823 | #define RNA_QUAL &at[1025] | arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tofasta.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/tofasta.h:47, from tofasta.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ tofasta.c: In function ‘DoSpecialDefline’: tofasta.c:1461:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable] 1461 | SeqFeatPtr gene = NULL; | ^~~~ tofasta.c: In function ‘FastaIdEx’: tofasta.c:3100:15: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable] 3100 | SeqIdPtr sip; | ^~~ tofasta.c: In function ‘CreateDefLineExEx’: tofasta.c:4991:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 4991 | if (vnp != NULL) | ^~ tofasta.c:4993:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 4993 | if (title != NULL) { | ^~ tofasta.c: In function ‘x_SetSuffix’: tofasta.c:8313:24: warning: variable ‘buf2’ set but not used [-Wunused-but-set-variable] 8313 | Char buf1 [512], buf2 [256]; | ^~~~ tofasta.c: In function ‘FastaToSeqEntryInternalExEx’: tofasta.c:2838:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2838 | fgets(buffer+1, BuffSize, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tofasta.c:2863:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2863 | fgets(buffer+i+1, FTSE_BUFF_CHUNK, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: tofasta.c:8058:17: warning: ‘x_StringInList’ defined but not used [-Wunused-function] 8058 | static Boolean x_StringInList ( | ^~~~~~~~~~~~~~ tofasta.c:3661:19: warning: ‘GatherGenesForCDS’ defined but not used [-Wunused-function] 3661 | static ValNodePtr GatherGenesForCDS(SeqLocPtr slp) | ^~~~~~~~~~~~~~~~~ tofasta.c:3627:19: warning: ‘GatherSeqFeatProt’ defined but not used [-Wunused-function] 3627 | static SeqFeatPtr GatherSeqFeatProt(BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~ tofasta.c:3541:19: warning: ‘GetCDSProtUnindexed’ defined but not used [-Wunused-function] 3541 | static SeqFeatPtr GetCDSProtUnindexed ( | ^~~~~~~~~~~~~~~~~~~ tofasta.c:3378:19: warning: ‘IndexedGatherDescrOnBioseq’ defined but not used [-Wunused-function] 3378 | static ValNodePtr IndexedGatherDescrOnBioseq (ItemInfoPtr iip, BioseqPtr bsp, Uint1 choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ tofasta.c:3283:16: warning: ‘get_descr’ defined but not used [-Wunused-function] 3283 | static Boolean get_descr (GatherContextPtr gcp) | ^~~~~~~~~ tofasta.c:3254:16: warning: ‘get_descr_on_top’ defined but not used [-Wunused-function] 3254 | static Boolean get_descr_on_top (GatherContextPtr gcp) | ^~~~~~~~~~~~~~~~ tofasta.c: In function ‘FastaReadSequenceInternalEx’: tofasta.c:2713:27: warning: ‘mask_to’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2713 | mask_sint->to = mask_to; | ~~~~~~~~~~~~~~^~~~~~~~~ tofasta.c: In function ‘FastaToSeqEntryInternalExEx’: tofasta.c:2774:25: warning: ‘firstchar’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2774 | const Char PNTR firstchar; | ^~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tofile.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from tofile.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tomedlin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmedli.h:80, from tomedlin.c:153: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valid.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from valid.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ valid.c: In function ‘GetUserFieldValueString’: valid.c:2212:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 2212 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld valid.c: In function ‘ValidateSeqIdCase’: valid.c:3574:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable] 3574 | GatherContextPtr gcp; | ^~~ valid.c: In function ‘ValidateGenProdSet’: valid.c:6046:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 6046 | GeneRefPtr grp; | ^~~ valid.c: In function ‘CountAdjacentProc’: valid.c:6730:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable] 6730 | GatherContextPtr gcp; | ^~~ valid.c: In function ‘CheckBioseqEndsForNAndGap’: valid.c:7040:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 7040 | if (str [0] == 'n' || str [0] == 'N' && begin_n != NULL) { | ^ valid.c:7061:56: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 7061 | if (str [len - 1] == 'n' || str [len - 1] == 'N' && end_n != NULL) { | ^ valid.c: In function ‘ValidateBioseqInst’: valid.c:7341:19: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable] 7341 | Uint1 tech; | ^~~~ valid.c:7278:19: warning: variable ‘prot’ set but not used [-Wunused-but-set-variable] 7278 | SeqFeatPtr prot; | ^~~~ valid.c: In function ‘FixOrgModVoucher’: valid.c:13882:22: warning: unused variable ‘allowed_type’ [-Wunused-variable] 13882 | Uint1 type = 0, allowed_type = 0; | ^~~~~~~~~~~~ valid.c: In function ‘ValidateBioSource’: valid.c:15514:19: warning: variable ‘isMicrosporidia’ set but not used [-Wunused-but-set-variable] 15514 | Boolean isMicrosporidia = FALSE; | ^~~~~~~~~~~~~~~ valid.c:15512:19: warning: variable ‘isEukaryote’ set but not used [-Wunused-but-set-variable] 15512 | Boolean isEukaryote = FALSE; | ^~~~~~~~~~~ valid.c:15503:19: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] 15503 | Int4 id; | ^~ valid.c: In function ‘ValidateDblink’: valid.c:16786:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable] 16786 | GatherContextPtr gcp; | ^~~ valid.c: In function ‘ValidateSeqDescrCommon’: valid.c:16883:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable] 16883 | PubdescPtr pdp; | ^~~ valid.c: In function ‘GetFeatsInGaps’: valid.c:18858:21: warning: variable ‘realBases’ set but not used [-Wunused-but-set-variable] 18858 | Int4 realBases; | ^~~~~~~~~ valid.c:18857:21: warning: variable ‘plusses’ set but not used [-Wunused-but-set-variable] 18857 | Int4 plusses; | ^~~~~~~ valid.c:18854:21: warning: variable ‘Ns’ set but not used [-Wunused-but-set-variable] 18854 | Int4 Ns; | ^~ valid.c:18851:21: warning: variable ‘dashes’ set but not used [-Wunused-but-set-variable] 18851 | Int4 dashes; | ^~~~~~ valid.c: In function ‘ValidateBioseqContextIndexed’: valid.c:20267:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 20267 | if (bvsp->is_mrna || cdscount == 1 && genecount < 2) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ valid.c:19476:65: warning: variable ‘cdsmgene’ set but not used [-Wunused-but-set-variable] 19476 | SeqFeatPtr utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene; | ^~~~~~~~ valid.c:19476:33: warning: variable ‘cdspgene’ set but not used [-Wunused-but-set-variable] 19476 | SeqFeatPtr utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene; | ^~~~~~~~ valid.c:19475:51: warning: variable ‘utr5minus’ set but not used [-Wunused-but-set-variable] 19475 | SeqFeatPtr utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus; | ^~~~~~~~~ valid.c:19475:41: warning: variable ‘utr3plus’ set but not used [-Wunused-but-set-variable] 19475 | SeqFeatPtr utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus; | ^~~~~~~~ valid.c:19442:41: warning: variable ‘utr3gene’ set but not used [-Wunused-but-set-variable] 19442 | SeqFeatPtr cdsgene, utr5gene, utr3gene; | ^~~~~~~~ valid.c: In function ‘ReportBadWGSGap’: valid.c:21153:18: warning: unused variable ‘is_wgs’ [-Wunused-variable] 21153 | Boolean is_wgs = FALSE; | ^~~~~~ valid.c: In function ‘ValidateBarcodeIndexNumber’: valid.c:21432:21: warning: variable ‘bin_len’ set but not used [-Wunused-but-set-variable] 21432 | Int4 bin_len; | ^~~~~~~ valid.c: In function ‘ValidateRptUnit’: valid.c:23411:32: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 23411 | Boolean badchars, found, just_nuc_letters, multi_rpt_unit, in_range; | ^~~~~ valid.c: In function ‘CheckForCommonCDSProduct’: valid.c:25628:19: warning: variable ‘is_nw’ set but not used [-Wunused-but-set-variable] 25628 | Boolean is_nw = FALSE; | ^~~~~ valid.c:25625:19: warning: variable ‘is_nc’ set but not used [-Wunused-but-set-variable] 25625 | Boolean is_nc = FALSE; | ^~~~~ valid.c: In function ‘CheckForIllegalDbxref’: valid.c:26017:16: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] 26017 | Int4 id; | ^~ valid.c: In function ‘ValidateAnticodon’: valid.c:26781:53: warning: variable ‘circular’ set but not used [-Wunused-but-set-variable] 26781 | ordered = TRUE, adjacent = FALSE, circular = FALSE, exception = FALSE; | ^~~~~~~~ valid.c:26780:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 26780 | Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE, | ^~~~~~ valid.c: In function ‘IsGeneXrefRedundant’: valid.c:28000:17: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 28000 | Int2 count; | ^~~~~ valid.c: In function ‘ValidateSeqFeat’: valid.c:28328:19: warning: unused variable ‘is_nc’ [-Wunused-variable] 28328 | Boolean is_nc = FALSE; | ^~~~~ valid.c:28308:19: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 28308 | Int2 count; | ^~~~~ valid.c:28286:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable] 28286 | PubdescPtr pdp; | ^~~ valid.c: In function ‘CdTransCheck’: valid.c:30490:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 30490 | GeneRefPtr grp; | ^~~ valid.c: In function ‘SpliceCheckEx’: valid.c:31313:19: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 31313 | SeqEntryPtr sep; | ^~~ valid.c: In function ‘CdsProductIdCheck’: valid.c:31689:15: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 31689 | GeneRefPtr grp; | ^~~ valid.c: In function ‘ValidateSeqLoc’: valid.c:31754:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 31754 | Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE, | ^~~~~~ valid.c:31753:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 31753 | SeqLocPtr tmp, prev; | ^~~~ valid.c: In function ‘SortSeqGraphProc’: valid.c:32156:26: warning: self-comparison always evaluates to false [-Wtautological-compare] 32156 | } else if (gip2->right < gip2->right) { | ^ At top level: valid.c:30138:13: warning: ‘ValidateTranslExcept’ defined but not used [-Wunused-function] 30138 | static void ValidateTranslExcept ( | ^~~~~~~~~~~~~~~~~~~~ valid.c:27650:16: warning: ‘CouldExtendPartial’ defined but not used [-Wunused-function] 27650 | static Boolean CouldExtendPartial (SeqLocPtr slp, Boolean partial5) | ^~~~~~~~~~~~~~~~~~ valid.c:20878:28: warning: ‘MultiGeneOverlapFree’ defined but not used [-Wunused-function] 20878 | static MultiGeneOverlapPtr MultiGeneOverlapFree (MultiGeneOverlapPtr m) | ^~~~~~~~~~~~~~~~~~~~ valid.c:20828:19: warning: ‘ListFeaturesContainedInLocation’ defined but not used [-Wunused-function] 20828 | static ValNodePtr ListFeaturesContainedInLocation (BioseqPtr bsp, SeqLocPtr slp, Uint1 seqfeatChoice, Uint1 featdefChoice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ valid.c:17541:16: warning: ‘IsEMBLAccn’ defined but not used [-Wunused-function] 17541 | static Boolean IsEMBLAccn (SeqEntryPtr sep, SeqLocPtr location) | ^~~~~~~~~~ valid.c:14642:16: warning: ‘CountryIsClosestToLatLon’ defined but not used [-Wunused-function] 14642 | static Boolean CountryIsClosestToLatLon ( | ^~~~~~~~~~~~~~~~~~~~~~~~ valid.c:14545:16: warning: ‘LatLonInRange’ defined but not used [-Wunused-function] 14545 | static Boolean LatLonInRange ( | ^~~~~~~~~~~~~ valid.c:13478:16: warning: ‘LatLonIsValid’ defined but not used [-Wunused-function] 13478 | static Boolean LatLonIsValid (CharPtr name) | ^~~~~~~~~~~~~ valid.c:10462:16: warning: ‘ConsistentWithC’ defined but not used [-Wunused-function] 10462 | static Boolean ConsistentWithC (Char ch) | ^~~~~~~~~~~~~~~ valid.c:6952:13: warning: ‘ReportLongSeqId’ defined but not used [-Wunused-function] 6952 | static void ReportLongSeqId (SeqIdPtr sip, ValidStructPtr vsp, Int4 max_len) | ^~~~~~~~~~~~~~~ valid.c:5932:13: warning: ‘CheckMutSetSources’ defined but not used [-Wunused-function] 5932 | static void CheckMutSetSources (BioSourcePtr biop, Pointer userdata) | ^~~~~~~~~~~~~~~~~~ valid.c:4360:13: warning: ‘FindLongIdsThatCollideWhenTruncated’ defined but not used [-Wunused-function] 4360 | static void FindLongIdsThatCollideWhenTruncated (SeqEntryPtr sep, ValidStructPtr vsp, Int4 trunc_len) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ valid.c:1511:16: warning: ‘IsNotUnclassifiedExcept’ defined but not used [-Wunused-function] 1511 | static Boolean IsNotUnclassifiedExcept (ValidStructPtr vsp) | ^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from valapi.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ valapi.c: In function ‘DoesStringMatchExpression’: valapi.c:263:15: warning: variable ‘errstr’ set but not used [-Wunused-but-set-variable] 263 | const char *errstr; | ^~~~~~ valapi.c: In function ‘DoesFieldValueMatchExpression’: valapi.c:292:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 292 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/alignmgr.h:261, from alignmgr.c:584: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ alignmgr.c: In function ‘AlnMgrIndexParentSA’: alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 1607 | sap->saip = (Pointer)AMAlignIndexFree(amaip); | ^ alignmgr.c: In function ‘AlnMgrGetNthBlockRange’: alignmgr.c:4182:21: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable] 4182 | AMAlignIndexPtr amaip; | ^~~~~ alignmgr.c: In function ‘AlnMgrMakeFakeMultipleEx’: alignmgr.c:5157:21: warning: variable ‘nogap’ set but not used [-Wunused-but-set-variable] 5157 | Boolean nogap; | ^~~~~ alignmgr.c: In function ‘AlnMgrMapBioseqToBioseq’: alignmgr.c:10840:19: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable] 10840 | Uint1 gap; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from alignmgr.c:584: alignmgr.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ alignmgr.c:10572:16: warning: ‘am_merge_after_edit’ defined but not used [-Wunused-function] 10572 | static Boolean am_merge_after_edit (SeqAlignPtr sap) | ^~~~~~~~~~~~~~~~~~~ alignmgr.c:6650:16: warning: ‘AlnMgrJaggedIndex’ defined but not used [-Wunused-function] 6650 | static Boolean AlnMgrJaggedIndex(SeqAlignPtr sap, AMmsmsPtr ams_head, AMmsmsPtr *ams_mhead, Int4 numrows) | ^~~~~~~~~~~~~~~~~ alignmgr.c:6123:18: warning: ‘AlnMgrConstructOverlaps’ defined but not used [-Wunused-function] 6123 | static AMmsmsPtr AlnMgrConstructOverlaps(AMmsmsPtr ams_head) | ^~~~~~~~~~~~~~~~~~~~~~~ alignmgr.c:5405:13: warning: ‘AlnMgrMergeNeighbors’ defined but not used [-Wunused-function] 5405 | static void AlnMgrMergeNeighbors(SeqAlignPtr salp) | ^~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function ‘AlnMgrUnpackSeqAlign’: alignmgr.c:1149:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1149 | sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function ‘AlnMgrGetNthSeqRangeInSA’: alignmgr.c:4115:19: warning: ‘tmp_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4115 | *stop = tmp_end; | ~~~~~~^~~~~~~~~ alignmgr.c:4113:20: warning: ‘tmp_beg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4113 | *start = tmp_beg; | ~~~~~~~^~~~~~~~~ alignmgr.c: In function ‘am_print_seqalign_indexes’: alignmgr.c:2416:30: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2416 | for (j=0; j<(saip->ssdp[i]->numsect); j++) | ~~~~^~~~~~ alignmgr.c:2481:34: warning: ‘amaip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2481 | for (j=0; j<(amaip->amadp[i]->numseg); j++) | ~~~~~^~~~~~~ alignmgr.c: In function ‘am_is_consistent’: alignmgr.c:10114:13: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10114 | AlnMgrGetNthUnalignedForNthRow(sap, n, i, &u_start, &u_stop); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function ‘AlnMgrGetSubAlign’: alignmgr.c:9097:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9097 | salp = am_cleanupsalp(salp); | ^~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function ‘AlnMgrMakeMultByIntersectOnMaster’: alignmgr.c:5592:4: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5592 | SeqIdFree(sip_tmp); | ^~~~~~~~~~~~~~~~~~ alignmgr.c:5865:10: warning: ‘sip_head’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5865 | while (sip && !done) | ^ alignmgr.c:5845:18: note: ‘sip_head’ was declared here 5845 | SeqIdPtr sip_head; | ^~~~~~~~ alignmgr.c:5881:16: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5881 | while (sip_tmp != NULL && !here) | ^ alignmgr.c:5846:18: note: ‘sip_tmp’ was declared here 5846 | SeqIdPtr sip_tmp; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aliparse.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/aliparse.h:12, from aliparse.c:9: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ aliparse.c: In function ‘s_IsInterleaved’: aliparse.c:929:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 929 | (s_configInfo.useMaybes == FALSE) && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 930 | (seqLinePtr->maybe == FALSE)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c:823:20: warning: variable ‘isMaybe’ set but not used [-Wunused-but-set-variable] 823 | Boolean isMaybe; | ^~~~~~~ aliparse.c: In function ‘s_ProcessInterId’: aliparse.c:1000:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 1000 | ErrInfoPtr errPtr; | ^~~~~~ aliparse.c: In function ‘s_ProcessInterSeq’: aliparse.c:1090:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 1090 | ErrInfoPtr errPtr = NULL; | ^~~~~~ aliparse.c: In function ‘s_AnalyzeInterleaved’: aliparse.c:1193:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1193 | (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c: In function ‘s_ProcessContigId’: aliparse.c:1385:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 1385 | ErrInfoPtr errPtr; | ^~~~~~ aliparse.c: In function ‘s_ProcessContigSeq’: aliparse.c:1476:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 1476 | ErrInfoPtr errPtr; | ^~~~~~ aliparse.c: In function ‘s_AnalyzeContiguous’: aliparse.c:1603:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1603 | (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c: In function ‘s_CheckContext’: aliparse.c:2150:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2150 | (seqLinePtr->maybe == TRUE) && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 2151 | (s_configInfo.useMaybes == TRUE)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c:2131:20: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable] 2131 | ErrInfoPtr errPtr; | ^~~~~~ aliparse.c: In function ‘PrintOutMultAlign’: aliparse.c:3161:10: warning: statement with no effect [-Wunused-value] 3161 | for (d; dnext = newSeqPart; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/aliparse.h:12, from aliparse.c:9: ../include/ncbistr.h:337:19: warning: ‘currentIdStr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 337 | #define StringCmp Nlm_StringCmp | ^~~~~~~~~~~~~ aliparse.c:631:18: note: ‘currentIdStr’ was declared here 631 | CharPtr currentIdStr; | ^~~~~~~~~~~~ aliparse.c: In function ‘Ali_Read’: aliparse.c:1355:16: warning: ‘previousLength’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1355 | errPtr = Ali_AddError (&(fileInfoPtr->errors),ERR_SEQ_LENGTH_MISMATCH, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 | previousLength, | ~~~~~~~~~~~~~~~ 1357 | s_configInfo.declaredInfo.seqLength); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c:1154:20: note: ‘previousLength’ was declared here 1154 | Int4 previousLength; | ^~~~~~~~~~~~~~ aliparse.c:927:18: warning: ‘seqLinePtr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 927 | if (seqLinePtr->sequence != NULL) | ~~~~~~~~~~^~~~~~~~~~ aliparse.c:820:20: note: ‘seqLinePtr’ was declared here 820 | SeqLineInfoPtr seqLinePtr; | ^~~~~~~~~~ aliparse.c:748:3: warning: ‘cLineType’ may be used uninitialized in this function [-Wmaybe-uninitialized] 748 | fprintf(stderr,"%04d: SEQUENCE[%c] : %s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 | seqLinePtr->rowNum, | ~~~~~~~~~~~~~~~~~~~ 750 | cLineType, | ~~~~~~~~~~ 751 | seqLinePtr->sequence); | ~~~~~~~~~~~~~~~~~~~~~ aliparse.c:723:20: note: ‘cLineType’ was declared here 723 | Char cLineType; | ^~~~~~~~~ aliparse.c: In function ‘ALI_ConvertToNCBIData’: aliparse.c:3276:4: warning: ‘sep_new’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3276 | SeqAlignAddInSeqEntry (sep_head, sanp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aliread.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from aliread.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/aliparse.h:15, from aliread.c:6: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignval.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from alignval.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ alignval.c: In function ‘ValidateSeqlengthInDenseSeg’: alignval.c:1267:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1267 | if(stptrtemp[j+i*aligndim]+lenptrtemp[i]>bslen) | ^ alignval.c: In function ‘PercentStringMatch’: alignval.c:1579:32: warning: variable ‘max_len’ set but not used [-Wunused-but-set-variable] 1579 | Int4 len1, len2, min_len, k, max_len; | ^~~~~~~ alignval.c: In function ‘CheckAlnSeqLens’: alignval.c:2004:12: warning: variable ‘aln_len’ set but not used [-Wunused-but-set-variable] 2004 | Int4 aln_len, start, stop; | ^~~~~~~ alignval.c: In function ‘ValidateSeqAlign’: alignval.c:2125:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable] 2125 | MsgAnswer ans; | ^~~ alignval.c: In function ‘GetAlignmentColumnPercentIdentities’: alignval.c:2511:14: warning: variable ‘num_match’ set but not used [-Wunused-but-set-variable] 2511 | Int4 num_match; | ^~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from alignval.c:57: alignval.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ alignval.c:2002:13: warning: ‘CheckAlnSeqLens’ defined but not used [-Wunused-function] 2002 | static void CheckAlnSeqLens (SeqAlignPtr salp) | ^~~~~~~~~~~~~~~ alignval.c:1560:16: warning: ‘IsSipContainedInStdseg’ defined but not used [-Wunused-function] 1560 | static Boolean IsSipContainedInStdseg(SeqIdPtr sip, StdSegPtr ssp) | ^~~~~~~~~~~~~~~~~~~~~~ alignval.c:602:13: warning: ‘delete_bioseqs’ defined but not used [-Wunused-function] 602 | static void delete_bioseqs (ValNodePtr ids, Uint2 entityID) | ^~~~~~~~~~~~~~ alignval.c: In function ‘ValMessage’: alignval.c:465:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=] 465 | sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence. Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from alignval.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignval.c:448:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=] 448 | sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence. Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from alignval.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sqnutil1.c: In function ‘GeneExtendFunc’: sqnutil1.c:2012:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 2012 | GeneRefPtr grp; | ^~~ sqnutil1.c: In function ‘ParseAnticodon’: sqnutil1.c:3494:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 3494 | Uint1 strand; | ^~~~~~ sqnutil1.c: In function ‘ParseCodeBreak’: sqnutil1.c:3617:17: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 3617 | Uint1 strand; | ^~~~~~ sqnutil1.c: In function ‘CleanUpPubdescAuthors’: sqnutil1.c:9093:20: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 9093 | ValNodePtr PNTR prev; | ^~~~ sqnutil1.c: In function ‘FixWrongFuzzOnPlusStrand’: sqnutil1.c:11948:15: warning: unused variable ‘spp’ [-Wunused-variable] 11948 | SeqPntPtr spp; | ^~~ sqnutil1.c: In function ‘FixWrongFuzzOnMinusStrand’: sqnutil1.c:12007:15: warning: unused variable ‘spp’ [-Wunused-variable] 12007 | SeqPntPtr spp; | ^~~ sqnutil1.c: In function ‘ConsolidateBioSourceNotes’: sqnutil1.c:13250:21: warning: variable ‘note_mod’ set but not used [-Wunused-but-set-variable] 13250 | OrgModPtr mod, note_mod; | ^~~~~~~~ sqnutil1.c:13249:21: warning: variable ‘note_ssp’ set but not used [-Wunused-but-set-variable] 13249 | SubSourcePtr ssp, note_ssp; | ^~~~~~~~ sqnutil1.c: In function ‘RemoveUnnecessaryGeneXrefs’: sqnutil1.c:15059:24: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 15059 | Int2 count; | ^~~~~ sqnutil1.c: In function ‘LinkTwoFeatures’: sqnutil1.c:17930:25: warning: variable ‘prev_xref’ set but not used [-Wunused-but-set-variable] 17930 | SeqFeatXrefPtr xref, prev_xref, next_xref; | ^~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sqnutil1.c:63: sqnutil1.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sqnutil1.c:10386:16: warning: ‘CleanUpSgml’ defined but not used [-Wunused-function] 10386 | static CharPtr CleanUpSgml ( | ^~~~~~~~~~~ sqnutil1.c:10272:13: warning: ‘SortGoTermsSfp’ defined but not used [-Wunused-function] 10272 | static void SortGoTermsSfp ( | ^~~~~~~~~~~~~~ sqnutil1.c:7405:16: warning: ‘IsStringSingleToken’ defined but not used [-Wunused-function] 7405 | static Boolean IsStringSingleToken (CharPtr str) | ^~~~~~~~~~~~~~~~~~~ sqnutil1.c:4942:13: warning: ‘CleanupConsSplice’ defined but not used [-Wunused-function] 4942 | static void CleanupConsSplice (GBQualPtr gbq) | ^~~~~~~~~~~~~~~~~ sqnutil1.c:2007:16: warning: ‘GeneExtendFunc’ defined but not used [-Wunused-function] 2007 | static Boolean GeneExtendFunc (GatherContextPtr gcp) | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sqnutil2.c: In function ‘FindResidueByName’: sqnutil2.c:5223:11: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 5223 | Uint1 last; | ^~~~ sqnutil2.c: In function ‘ReadFeatureTableEx’: sqnutil2.c:7254:18: warning: variable ‘isnote’ set but not used [-Wunused-but-set-variable] 7254 | Boolean isnote; | ^~~~~~ sqnutil2.c:7246:18: warning: variable ‘endsinspace’ set but not used [-Wunused-but-set-variable] 7246 | Boolean endsinspace; | ^~~~~~~~~~~ sqnutil2.c: In function ‘SeqEntryCopyReplace’: sqnutil2.c:9270:8: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 9270 | Uint1 type = 0; | ^~~~ sqnutil2.c: In function ‘StreamingReadBioseq’: sqnutil2.c:10095:10: warning: variable ‘level’ set but not used [-Wunused-but-set-variable] 10095 | Int2 level; | ^~~~~ sqnutil2.c: In function ‘StreamAsnForDescriptors’: sqnutil2.c:10328:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 10328 | while (rval = StreamingReadSeqEntry (aip, sp, &sr)) { | ^~~~ sqnutil2.c: In function ‘WriteAsnWithReplacedDescriptors’: sqnutil2.c:10749:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 10749 | while (rval = StreamingReadWriteSeqEntry(desc_stream_list, aip_in, aip_out, sp)) { | ^~~~ sqnutil2.c: In function ‘ReadFeatureTableFile’: sqnutil2.c:11700:18: warning: variable ‘begin’ set but not used [-Wunused-but-set-variable] 11700 | Int4 begin; | ^~~~~ sqnutil2.c: In function ‘ReadFastaOnly’: sqnutil2.c:11894:18: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable] 11894 | Char seqid [2048]; | ^~~~~ sqnutil2.c: In function ‘ReadDeltaFastaWithEmptyDefline’: sqnutil2.c:12446:29: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable] 12446 | Char line [4096], seqid [2048]; | ^~~~~ sqnutil2.c: In function ‘SortSeqGraphProc’: sqnutil2.c:13002:26: warning: self-comparison always evaluates to false [-Wtautological-compare] 13002 | } else if (gip2->right < gip2->right) { | ^ sqnutil2.c: In function ‘PrintQualityScoresToBuffer’: sqnutil2.c:13052:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 13052 | Uint2 entityID; | ^~~~~~~~ sqnutil2.c: In function ‘GetScoresbySeqId’: sqnutil2.c:13461:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 13461 | Uint2 entityID; | ^~~~~~~~ sqnutil2.c: In function ‘RemoveGapsFromDeltaLocation’: sqnutil2.c:15480:15: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 15480 | Uint1 strand; | ^~~~~~ sqnutil2.c: In function ‘IsStringInSpanInList’: sqnutil2.c:16693:11: warning: variable ‘str_val’ set but not used [-Wunused-but-set-variable] 16693 | Int4 str_val; | ^~~~~~~ sqnutil2.c:16691:27: warning: variable ‘suffix_len’ set but not used [-Wunused-but-set-variable] 16691 | Int4 prefix_len = 0, suffix_len; | ^~~~~~~~~~ sqnutil2.c: In function ‘CreateStructuredCommentsFromFile’: sqnutil2.c:18415:35: warning: variable ‘vnp_h’ set but not used [-Wunused-but-set-variable] 18415 | ValNodePtr table, header, line, vnp_h, vnp_l, tmp; | ^~~~~ sqnutil2.c: In function ‘AlignmentIntervalToString’: sqnutil2.c:18779:14: warning: variable ‘target_strand’ set but not used [-Wunused-but-set-variable] 18779 | Uint1 target_strand; | ^~~~~~~~~~~~~ sqnutil2.c:18778:14: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable] 18778 | Int4 seq_len; | ^~~~~~~ sqnutil2.c: In function ‘AdjustForConsensusSpliceCallback’: sqnutil2.c:20313:33: warning: variable ‘partial5_last’ set but not used [-Wunused-but-set-variable] 20313 | Boolean partial5, partial3, partial5_last, partial3_last, first = TRUE; | ^~~~~~~~~~~~~ sqnutil2.c: In function ‘RemoveGIProc’: sqnutil2.c:20926:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable] 20926 | SeqIdPtr nextid, sip; | ^~~~~~ sqnutil2.c: In function ‘RemoveBadCodonRecognizedCallback’: sqnutil2.c:22812:13: warning: variable ‘rcodon’ set but not used [-Wunused-but-set-variable] 22812 | Uint1 rcodon [4]; | ^~~~~~ sqnutil2.c: In function ‘CompareStructuredComment’: sqnutil2.c:25151:23: warning: variable ‘ovp2’ set but not used [-Wunused-but-set-variable] 25151 | ObjValNodePtr ovp1, ovp2; | ^~~~ sqnutil2.c:25151:17: warning: variable ‘ovp1’ set but not used [-Wunused-but-set-variable] 25151 | ObjValNodePtr ovp1, ovp2; | ^~~~ sqnutil2.c: In function ‘UniqueAndCountValNodeCS’: sqnutil2.c:25546:17: warning: variable ‘curr’ set but not used [-Wunused-but-set-variable] 25546 | ValNodePtr curr; | ^~~~ sqnutil2.c: In function ‘PerformArticleQuery’: sqnutil2.c:25810:20: warning: variable ‘debug_mode’ set but not used [-Wunused-but-set-variable] 25810 | Boolean debug_mode = FALSE; | ^~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sqnutil2.c:58: sqnutil2.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sqnutil2.c:18065:19: warning: ‘AuthAffilListFree’ defined but not used [-Wunused-function] 18065 | static ValNodePtr AuthAffilListFree (ValNodePtr list) | ^~~~~~~~~~~~~~~~~ sqnutil2.c:18044:21: warning: ‘AuthAffilNew’ defined but not used [-Wunused-function] 18044 | static AuthAffilPtr AuthAffilNew (CharPtr affil) | ^~~~~~~~~~~~ sqnutil2.c:16282:19: warning: ‘MakeTranscriptomeIDTokensFromLine’ defined but not used [-Wunused-function] 16282 | static ValNodePtr MakeTranscriptomeIDTokensFromLine (CharPtr line) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c:16188:13: warning: ‘RevCompFeatsOnBioseq’ defined but not used [-Wunused-function] 16188 | static void RevCompFeatsOnBioseq (BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~~~~ sqnutil2.c:8333:16: warning: ‘DoesSeqEntryAccessionMatchList’ defined but not used [-Wunused-function] 8333 | static Boolean DoesSeqEntryAccessionMatchList (SeqEntryPtr sep, ValNodePtr accn_list) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c:4684:16: warning: ‘IsNonSeqChar’ defined but not used [-Wunused-function] 4684 | static Boolean IsNonSeqChar (Char ch, Boolean is_prot) | ^~~~~~~~~~~~ sqnutil2.c: In function ‘ReplaceLocalID’: sqnutil2.c:23605:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 5 and 68 [-Wformat-overflow=] 23605 | sprintf (tmp, "%s__%d", str, (int) count); | ^~ sqnutil2.c:23605:17: note: directive argument in the range [-32768, 32767] 23605 | sprintf (tmp, "%s__%d", str, (int) count); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 72 bytes into a destination of size 70 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c: In function ‘AdjustSeqEntryForConsensusSpliceBioseqCallback’: sqnutil2.c:20313:48: warning: ‘partial3_last’ may be used uninitialized in this function [-Wmaybe-uninitialized] 20313 | Boolean partial5, partial3, partial5_last, partial3_last, first = TRUE; | ^~~~~~~~~~~~~ sqnutil2.c: In function ‘PrintQualityScoresToBuffer’: sqnutil2.c:13110:54: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 5 and 56 [-Wformat-overflow=] 13110 | sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title, | ^~~ sqnutil2.c:13110:17: note: directive argument in the range [-2147483647, 2147483647] 13110 | sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 32 or more bytes (assuming 93) into a destination of size 84 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil3.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sqnutil3.c: In function ‘BspLinkCDSmRNAbyOverlap’: sqnutil3.c:528:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 528 | Int2 count; | ^~~~~ sqnutil3.c: In function ‘CautiousSeqEntryCleanup’: sqnutil3.c:2178:16: warning: variable ‘taxserver’ set but not used [-Wunused-but-set-variable] 2178 | Boolean taxserver; | ^~~~~~~~~ sqnutil3.c: In function ‘AddGapSeqLit’: sqnutil3.c:3127:19: warning: unused variable ‘gap_chars’ [-Wunused-variable] 3127 | CharPtr gap_chars = "NNNNNNNNNN" | ^~~~~~~~~ sqnutil3.c: In function ‘ConvertSegSetsToDeltaSequencesInt’: sqnutil3.c:3382:26: warning: variable ‘prev_sep’ set but not used [-Wunused-but-set-variable] 3382 | SeqEntryPtr sub_sep, prev_sep, next_sep; | ^~~~~~~~ sqnutil3.c: In function ‘MakeSequinDataFromAlignmentEx’: sqnutil3.c:4797:32: warning: variable ‘num_sets’ set but not used [-Wunused-but-set-variable] 4797 | Int4 index, curr_seg, num_sets; | ^~~~~~~~ sqnutil3.c:4791:26: warning: variable ‘salp_last’ set but not used [-Wunused-but-set-variable] 4791 | SeqAlignPtr salp_list, salp_last; | ^~~~~~~~~ sqnutil3.c:4791:15: warning: variable ‘salp_list’ set but not used [-Wunused-but-set-variable] 4791 | SeqAlignPtr salp_list, salp_last; | ^~~~~~~~~ sqnutil3.c: In function ‘ConvertContainedCDSToMiscFeat’: sqnutil3.c:12824:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 12824 | Uint1 strand; | ^~~~~~ sqnutil3.c: In function ‘OrgNameMatchExceptOldName’: sqnutil3.c:13713:28: warning: self-comparison always evaluates to false [-Wtautological-compare] 13713 | || onp2->mgcode != onp2->mgcode | ^~ sqnutil3.c: In function ‘FindMismatchedCitSubAffiliations’: sqnutil3.c:19281:14: warning: variable ‘has_seq_submit’ set but not used [-Wunused-but-set-variable] 19281 | Boolean has_seq_submit = TRUE; | ^~~~~~~~~~~~~~ sqnutil3.c: In function ‘GetCDSformRNA’: sqnutil3.c:20267:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 20267 | Int2 count; | ^~~~~ sqnutil3.c: In function ‘FindTextInFlatfileOncaller’: sqnutil3.c:22140:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable] 22140 | Boolean okay; | ^~~~ sqnutil3.c: In function ‘CheckForTitleAuthorConflicts’: sqnutil3.c:23168:14: warning: variable ‘author_conflict’ set but not used [-Wunused-but-set-variable] 23168 | Boolean author_conflict = FALSE; | ^~~~~~~~~~~~~~~ sqnutil3.c: In function ‘SortVnpByBspProjectId’: sqnutil3.c:26956:31: warning: the comparison will always evaluate as ‘true’ for the address of ‘vnp2’ will never be NULL [-Waddress] 26956 | if (vnp1 != NULL &&& vnp2 != NULL) { | ^~ sqnutil3.c: In function ‘GetDiscrepancyItemTextEx’: sqnutil3.c:31033:21: warning: variable ‘special_flag’ set but not used [-Wunused-but-set-variable] 31033 | Boolean special_flag = FALSE; | ^~~~~~~~~~~~ sqnutil3.c: In function ‘CollectionDateIsInTheFuture’: sqnutil3.c:34586:20: warning: variable ‘time’ set but not used [-Wunused-but-set-variable] 34586 | CharPtr str, time; | ^~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sqnutil3.c:62: sqnutil3.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sqnutil3.c: In function ‘FillInMissingTraces’: sqnutil3.c:35189:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 35189 | system (cmmd); | ^~~~~~~~~~~~~ At top level: sqnutil3.c:36777:13: warning: ‘TestLatLonFormatting’ defined but not used [-Wunused-function] 36777 | static void TestLatLonFormatting (FILE *fp) | ^~~~~~~~~~~~~~~~~~~~ sqnutil3.c:34406:22: warning: ‘BetterDateFree’ defined but not used [-Wunused-function] 34406 | static BetterDatePtr BetterDateFree (BetterDatePtr dp) | ^~~~~~~~~~~~~~ sqnutil3.c:33998:16: warning: ‘GetColon’ defined but not used [-Wunused-function] 33998 | static CharPtr GetColon (CharPtr str) | ^~~~~~~~ sqnutil3.c:17224:24: warning: ‘IntervalPairFree’ defined but not used [-Wunused-function] 17224 | static IntervalPairPtr IntervalPairFree (IntervalPairPtr i) | ^~~~~~~~~~~~~~~~ sqnutil3.c:10883:16: warning: ‘IsMitochondrionBioseq’ defined but not used [-Wunused-function] 10883 | static Boolean IsMitochondrionBioseq(BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~~~~~ sqnutil3.c: In function ‘LinkCDSmRNAbyLabelAndLocationCallback’: sqnutil3.c:876:23: warning: ‘best_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 876 | } else if (diff < best_diff) { | ^ sqnutil3.c: In function ‘FillInMissingTraces’: sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=] 35188 | sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out); | ^~ ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil3.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=] 35188 | sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out); | ^~ ~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil3.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c: In function ‘tRNASameStrandBioseqCallback’: sqnutil3.c:16769:8: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16769 | if (strand == Seq_strand_minus) { | ^ sqnutil3.c: In function ‘CheckForDivConflicts’: sqnutil3.c:8132:15: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8132 | else ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQFEAT, sfp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c:8131:13: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 8131 | ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQDESC, sdp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c: In function ‘FindMismatchedComments’: sqnutil3.c:26612:47: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 26612 | sprintf (fmt, sub_fmt, (CharPtr) sdp->data.ptrvalue); | ~~~~~~~~~^~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil4.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sqnutil4.c: In function ‘ListClauses’: sqnutil4.c:8566:43: warning: variable ‘twobefore’ set but not used [-Wunused-but-set-variable] 8566 | FeatureClausePtr thisclause, onebefore, twobefore, oneafter, twoafter; | ^~~~~~~~~ sqnutil4.c: In function ‘SmashOneTallClause’: sqnutil4.c:9900:20: warning: variable ‘subclause_featlist’ set but not used [-Wunused-but-set-variable] 9900 | ValNodePtr subclause_featlist; | ^~~~~~~~~~~~~~~~~~ sqnutil4.c: In function ‘GetFeatureClauseForSeg’: sqnutil4.c:10787:21: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 10787 | Int4 start, stop; | ^~~~~ sqnutil4.c: In function ‘RemoveAutodefObjectsForDesc’: sqnutil4.c:13618:18: warning: unused variable ‘bssp’ [-Wunused-variable] 13618 | BioseqSetPtr bssp; | ^~~~ sqnutil4.c:13617:15: warning: unused variable ‘bsp’ [-Wunused-variable] 13617 | BioseqPtr bsp; | ^~~ sqnutil4.c: In function ‘ConvertProtToImpFunc’: sqnutil4.c:15072:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 15072 | Uint2 entityID; | ^~~~~~~~ sqnutil4.c: In function ‘ExtraCDSCreationActions’: sqnutil4.c:15989:28: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable] 15989 | SeqEntryPtr psep, nsep; | ^~~~ sqnutil4.c: In function ‘TESTDisplayQualCombo’: sqnutil4.c:17099:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 17099 | Int4 val; | ^~~ sqnutil4.c: In function ‘ConvertCDSToMatPeptideForOverlappingCDS’: sqnutil4.c:18589:15: warning: variable ‘crp’ set but not used [-Wunused-but-set-variable] 18589 | CdRegionPtr crp; | ^~~ sqnutil4.c: In function ‘AddNewUniqueAnnotations’: sqnutil4.c:18780:39: warning: variable ‘sap_tmp_next’ set but not used [-Wunused-but-set-variable] 18780 | SeqAnnotPtr sap, sap_next, sap_tmp, sap_tmp_next, sap_copy, last_sap; | ^~~~~~~~~~~~ sqnutil4.c: In function ‘AssignBioseqToLineageGroup’: sqnutil4.c:19443:27: warning: variable ‘vnp_last’ set but not used [-Wunused-but-set-variable] 19443 | ValNodePtr list, vnp, vnp_last = NULL; | ^~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from sqnutil4.c:58: sqnutil4.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/tax3api.h:51, from sqnutil4.c:64: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ sqnutil4.c:17248:13: warning: ‘TESTDisplayList’ defined but not used [-Wunused-function] 17248 | static void TESTDisplayList (ValNodePtr new_list) | ^~~~~~~~~~~~~~~ sqnutil4.c:17219:19: warning: ‘ExpandOneComboListUsingAllPresentQuals’ defined but not used [-Wunused-function] 17219 | static ValNodePtr ExpandOneComboListUsingAllPresentQuals (QualComboPtr q) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil4.c:16930:16: warning: ‘RemoveFieldFromUniqBioSrcGrpList’ defined but not used [-Wunused-function] 16930 | static Boolean RemoveFieldFromUniqBioSrcGrpList (ValNodePtr list, FieldTypePtr field) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil4.c:10029:19: warning: ‘RemoveAllButLastCDS’ defined but not used [-Wunused-function] 10029 | static ValNodePtr RemoveAllButLastCDS ( | ^~~~~~~~~~~~~~~~~~~ sqnutil4.c:9998:13: warning: ‘SmashTallClauses’ defined but not used [-Wunused-function] 9998 | static void SmashTallClauses ( | ^~~~~~~~~~~~~~~~ sqnutil4.c:9834:13: warning: ‘RemoveFeats’ defined but not used [-Wunused-function] 9834 | static void RemoveFeats ( | ^~~~~~~~~~~ sqnutil4.c:5211:13: warning: ‘CountFeatures’ defined but not used [-Wunused-function] 5211 | static Int4 CountFeatures ( | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF subutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from subutil.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ subutil.c: In function ‘AddSeqLitToBioseq’: subutil.c:769:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 769 | ValNodePtr vnp; | ^~~ subutil.c: In function ‘AddReferenceToSegmentedEntry’: subutil.c:1163:22: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 1163 | SeqEntryPtr tmp, prev; | ^~~~ subutil.c: In function ‘GetDNAConv’: subutil.c:1624:16: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1624 | dnaconv[*ptr] = *ptr; | ^~~~ subutil.c: In function ‘GetProteinConv’: subutil.c:1646:17: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1646 | protconv[*ptr] = *ptr; | ^~~~ subutil.c: In function ‘AddBasesToByteStore’: subutil.c:1669:26: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1669 | residue = dnaconv[ch]; | ^ subutil.c: In function ‘AddAAsToByteStore’: subutil.c:1700:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1700 | residue = aaconv[ch]; | ^ subutil.c: In function ‘CitArtBuild’: subutil.c:2683:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 2683 | ValNodePtr vnp, tmp; | ^~~ subutil.c: In function ‘MakeRNAFeature’: subutil.c:3639:29: warning: comparison between pointer and zero character constant [-Wpointer-compare] 3639 | if (AA_for_tRNA != '\0') | ^~ subutil.c:3639:17: note: did you mean to dereference the pointer? 3639 | if (AA_for_tRNA != '\0') | ^ At top level: subutil.c:3546:20: warning: ‘TranslateCdRegionNew’ defined but not used [-Wunused-function] 3546 | static SeqEntryPtr TranslateCdRegionNew ( | ^~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF edutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/edutil.h:188, from edutil.c:365: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ edutil.c: In function ‘SeqLocsToDeltaSeqs’: edutil.c:795:14: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable] 795 | SeqIdPtr sip; | ^~~ edutil.c: In function ‘SeqLocCopyPart’: edutil.c:2243:13: warning: variable ‘done’ set but not used [-Wunused-but-set-variable] 2243 | Boolean done, started, wasa_null, hada_null; | ^~~~ edutil.c: In function ‘IndexedSeqFeatsCopy’: edutil.c:2400:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable] 2400 | ValNodePtr region; | ^~~~~~ edutil.c: In function ‘SeqFeatsCopy’: edutil.c:2504:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable] 2504 | ValNodePtr region; | ^~~~~~ edutil.c: In function ‘SeqLocInsert’: edutil.c:3686:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable] 3686 | Int4 diff, numpnt, i, tpos; | ^~~~ edutil.c: In function ‘SeqEdRecreateDeletedFeats’: edutil.c:4212:19: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable] 4212 | SeqFeatPtr sfp; | ^~~ edutil.c: In function ‘SeqEdSeqLocInsert’: edutil.c:4512:8: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable] 4512 | Int4 diff, numpnt, i, tpos; | ^~~~ edutil.c: In function ‘SeqEdSeqLocDelete’: edutil.c:5069:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable] 5069 | Int4 diff; | ^~~~ edutil.c: In function ‘SeqEdInsertAdjustFeat’: edutil.c:5300:7: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 5300 | && sfp->data.choice == SEQFEAT_CDREGION) edutil.c: In function ‘SeqEdDeleteFromBsp’: edutil.c:6485:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 6485 | && sfp->data.choice == SEQFEAT_CDREGION) edutil.c:6548:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 6548 | && sfp->data.choice == SEQFEAT_CDREGION) edutil.c:6437:21: warning: variable ‘merge_mode’ set but not used [-Wunused-but-set-variable] 6437 | Boolean merge_mode; | ^~~~~~~~~~ edutil.c:6428:21: warning: variable ‘feats_altered’ set but not used [-Wunused-but-set-variable] 6428 | Boolean feats_altered = FALSE; | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from asn2ff1.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff1.c: In function ‘asn2ff_print’: asn2ff1.c:289:17: warning: unused variable ‘dsp’ [-Wunused-variable] 289 | DescrStructPtr dsp = NULL; | ^~~ asn2ff1.c: In function ‘Asn2ffJobCreate’: asn2ff1.c:351:18: warning: unused variable ‘itemID’ [-Wunused-variable] 351 | Uint4 itemID = 0; | ^~~~~~ asn2ff1.c: In function ‘SeqEntryToEntrez’: asn2ff1.c:498:15: warning: unused variable ‘slp’ [-Wunused-variable] 498 | SeqLocPtr slp = NULL; | ^~~ asn2ff1.c: In function ‘SeqLocToFlat’: asn2ff1.c:1518:19: warning: unused variable ‘itemID’ [-Wunused-variable] 1518 | Uint4 itemID=0; | ^~~~~~ asn2ff1.c: In function ‘asn2ff_setup’: asn2ff1.c:1579:12: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable] 1579 | BioseqPtr bsp; | ^~~ asn2ff1.c: In function ‘PrintStatusLine’: asn2ff1.c:2197:15: warning: unused variable ‘ptr’ [-Wunused-variable] 2197 | CharPtr u, ptr=NULL; | ^~~ asn2ff1.c: In function ‘asn2gb_setup’: asn2ff1.c:2403:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2403 | if (ajp->genome_view && gbp->map == FALSE || ajp->contig_view) { At top level: asn2ff1.c:2189:13: warning: ‘PrintStatusLine’ defined but not used [-Wunused-function] 2189 | static void PrintStatusLine(Asn2ffJobPtr ajp, GBEntryPtr gbp) | ^~~~~~~~~~~~~~~ asn2ff1.c:2171:16: warning: ‘find_user_object’ defined but not used [-Wunused-function] 2171 | static Boolean find_user_object(BioseqPtr bsp) | ^~~~~~~~~~~~~~~~ asn2ff1.c:816:19: warning: ‘SeqEntryToLinkStrEx’ defined but not used [-Wunused-function] 816 | static LinkStrPtr SeqEntryToLinkStrEx(Asn2ffJobPtr ajp, SeqEntryPtr sep, LinkStrPtr lsp, Uint1 format) | ^~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff1.c:45: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff1.c: In function ‘print_taxinfo’: asn2ff1.c:4356:19: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 4356 | sprintf(tmp, "%d", gcode); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from asn2ff1.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff1.c: In function ‘asn2embl_setup’: asn2ff1.c:2754:7: warning: ‘max’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2754 | if (max == index+1) { | ^ asn2ff1.c: In function ‘asn2gp_setup’: asn2ff1.c:2942:4: warning: ‘feat_num’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2942 | for (index=0; index < feat_num; index++) { | ^~~ asn2ff1.c: In function ‘SeqEntryToGBFlatNoSeq’: asn2ff1.c:1292:15: warning: ‘rsult’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1292 | Boolean rsult; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from asn2ff2.c:216: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff2.c: In function ‘GetStrForBankit’: asn2ff2.c:518:9: warning: unused variable ‘i’ [-Wunused-variable] 518 | Int2 i=0, ptrlen = 0; | ^ asn2ff2.c: In function ‘GetCommentByChoice’: asn2ff2.c:769:34: warning: unused variable ‘string’ [-Wunused-variable] 769 | CharPtr buf = NULL, ptr = NULL, string=NULL, new_string=NULL, str=NULL; | ^~~~~~ asn2ff2.c: In function ‘GP_GetSeqDescrComms’: asn2ff2.c:1163:10: warning: unused variable ‘got_comment’ [-Wunused-variable] 1163 | Boolean got_comment=FALSE; | ^~~~~~~~~~~ asn2ff2.c: At top level: asn2ff2.c:1358:8: warning: return type defaults to ‘int’ [-Wimplicit-int] 1358 | static ChoicePID(SeqIdPtr sid) | ^~~~~~~~~ asn2ff2.c: In function ‘GetGibbsqCommentLength’: asn2ff2.c:1600:7: warning: unused variable ‘gibbsq’ [-Wunused-variable] 1600 | Int4 gibbsq=0, total; | ^~~~~~ asn2ff2.c: In function ‘GatherDescrByChoice’: asn2ff2.c:1864:8: warning: variable ‘bspID’ set but not used [-Wunused-but-set-variable] 1864 | Uint2 bspID; | ^~~~~ At top level: asn2ff2.c:1190:16: warning: ‘GetSPBlock’ defined but not used [-Wunused-function] 1190 | static CharPtr GetSPBlock (Asn2ffJobPtr ajp, GBEntryPtr gbp) | ^~~~~~~~~~ asn2ff2.c:680:16: warning: ‘GetEvidence’ defined but not used [-Wunused-function] 680 | static CharPtr GetEvidence(Asn2ffJobPtr ajp, GBEntryPtr gbp) | ^~~~~~~~~~~ asn2ff2.c:232:16: warning: ‘has_comment’ defined but not used [-Wunused-variable] 232 | static Boolean has_comment; | ^~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff2.c:218: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff2.c: In function ‘GetCommentByChoice’: asn2ff2.c:829:8: warning: ‘is_other’ may be used uninitialized in this function [-Wmaybe-uninitialized] 829 | if (is_other == TRUE && mfp->completeness) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff3.c: In function ‘PutGeneFirst’: asn2ff3.c:1073:26: warning: unused variable ‘qual_temp’ [-Wunused-variable] 1073 | GBQualPtr gbqual, qual, qual_temp=NULL, qual_gene=NULL; | ^~~~~~~~~ asn2ff3.c:1072:10: warning: unused variable ‘still_looking’ [-Wunused-variable] 1072 | Boolean still_looking=TRUE; | ^~~~~~~~~~~~~ asn2ff3.c: In function ‘mRNAEvidenceComment’: asn2ff3.c:1157:9: warning: unused variable ‘Locus_id’ [-Wunused-variable] 1157 | Int4 Locus_id = 0; | ^~~~~~~~ asn2ff3.c: In function ‘Add_gene_id’: asn2ff3.c:2717:24: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘Nlm_VoidPtr’ {aka ‘void *’} [-Wformat=] 2717 | sprintf(val, "GeneID:%s", vnp->data.ptrvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | char * Nlm_VoidPtr {aka void *} | %p asn2ff3.c: In function ‘Add_trid’: asn2ff3.c:3142:20: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3142 | sprintf(buf, "%ld", sip->data.intvalue); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long int Nlm_Int8 {aka long long int} | %lld asn2ff3.c:3123:9: warning: unused variable ‘gi’ [-Wunused-variable] 3123 | BIG_ID gi = -1; | ^~ asn2ff3.c: In function ‘AddPID’: asn2ff3.c:3185:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3185 | sprintf(buf, "%ld", sip->data.intvalue); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long int Nlm_Int8 {aka long long int} | %lld At top level: asn2ff3.c:2702:13: warning: ‘Add_gene_id’ defined but not used [-Wunused-function] 2702 | static void Add_gene_id (GeneStructPtr gsp, SeqFeatPtr sfp_out) | ^~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff3.c:39: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: asn2ff3.c: In function ‘Add_dbxref’: ../include/ncbimem.h:232:23: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ asn2ff3.c:216:10: note: ‘val’ was declared here 216 | CharPtr val; | ^~~ asn2ff3.c: In function ‘GettRNAaa’: asn2ff3.c:1619:11: warning: ‘seq_code’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1619 | ptr = Get3LetterSymbol(seq_code, table, trna->aa, error_msgs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: asn2ff3.c: In function ‘mRNAEvidenceComment’: ../include/ncbistr.h:331:19: warning: ‘ne_name’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ asn2ff3.c:1153:32: note: ‘ne_name’ was declared here 1153 | CharPtr method = NULL, ptr, ne_name; | ^~~~~~~ asn2ff3.c: In function ‘ConvertToNAImpFeat’: asn2ff3.c:2254:23: warning: ‘%ld’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=] 2254 | sprintf(buf_ptr, "%ld", (long) (cdr->frame)); | ^~~ asn2ff3.c:2254:22: note: directive argument in the range [1, 255] 2254 | sprintf(buf_ptr, "%ld", (long) (cdr->frame)); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff4.c:273: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff4.c: In function ‘FlatLocPoint’: asn2ff4.c:437:15: warning: variable ‘order’ set but not used [-Wunused-but-set-variable] 437 | static Uint1 order[NUM_SEQID]; | ^~~~~ asn2ff4.c: In function ‘do_FlatLoc’: asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1122 | if ( ! FlatVirtLoc( bsp, slp)) | ^ asn2ff4.c: At top level: asn2ff4.c:1347:8: warning: return type defaults to ‘int’ [-Wimplicit-int] 1347 | static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2) | ^~~~~~~~~~ asn2ff4.c: In function ‘CreateImpFeatFromProt’: asn2ff4.c:1659:14: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 1659 | GeneRefPtr grp; | ^~~ asn2ff4.c: In function ‘MatchNAGeneToFeat’: asn2ff4.c:2196:17: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable] 2196 | NoteStructPtr nsp; /* UNUSED */ | ^~~ asn2ff4.c: In function ‘MatchAAGeneToFeat’: asn2ff4.c:2367:18: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable] 2367 | NoteStructPtr nsp; /* UNUSED */ | ^~~ asn2ff4.c: In function ‘SortOrganizeFeat’: asn2ff4.c:2457:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2457 | if (ofp == NULL) | ^~ asn2ff4.c:2459:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2459 | if (ofp->sfpListsize > 0 && ofp->sortListsize < ofp->sfpListsize) { | ^~ asn2ff4.c: In function ‘OrganizeSeqFeat’: asn2ff4.c:2578:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2578 | if (ajp->ignore_top) | ^~ asn2ff4.c:2580:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2580 | gsc.seglevels = 1; | ^~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff4.c:273: At top level: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff4.c: In function ‘CheckNewSfpLoc’: asn2ff4.c:1767:7: warning: ‘slp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1767 | if (SeqLocLen(slp) <= BioseqGetLen(bsp)) { | ^~~~~~~~~~~~~~ asn2ff4.c: In function ‘CreateImpFeatFromProt’: asn2ff4.c:1723:18: warning: ‘%d’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=] 1723 | sprintf(buf, "%d", cdr->frame); | ^~ asn2ff4.c:1723:17: note: directive argument in the range [1, 255] 1723 | sprintf(buf, "%d", cdr->frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff4.c:273: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff5.c: In function ‘format_cit_sub’: asn2ff5.c:1023:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1023 | format == EMBLPEPT_FMT && afp->choice == 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ asn2ff5.c:926:41: warning: variable ‘need_space’ set but not used [-Wunused-but-set-variable] 926 | Boolean need_comma = FALSE, /*UNUSED*/need_space = TRUE; | ^~~~~~~~~~ asn2ff5.c: In function ‘format_thesis’: asn2ff5.c:1213:20: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable] 1213 | Boolean /*UNUSED*/embl_format = FALSE; | ^~~~~~~~~~~ asn2ff5.c: In function ‘format_book’: asn2ff5.c:1296:10: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable] 1296 | Boolean embl_format = FALSE; | ^~~~~~~~~~~ asn2ff5.c: In function ‘format_jourarticle’: asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1680 | if (ip->pages != NULL) | ^ asn2ff5.c: In function ‘StripParanthesis’: asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value] 2124 | temp++; *ptr_in++; | ^~~~~~~~~ asn2ff5.c: In function ‘PostARefErrMessage’: asn2ff5.c:3005:20: warning: variable ‘ignore_this’ set but not used [-Wunused-but-set-variable] 3005 | Boolean /*UNUSED*/ignore_this, submit=FALSE, error; | ^~~~~~~~~~~ asn2ff5.c: At top level: asn2ff5.c:188:26: warning: ‘GetSubmitterName’ declared ‘static’ but never defined [-Wunused-function] 188 | static CharPtr /*UNUSED*/GetSubmitterName PROTO ((Uint1 format, ValNodePtr pub)); | ^~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff5.c:177: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff5.c: In function ‘CheckPubs’: asn2ff5.c:2772:5: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2772 | PostARefErrMessage (ajp, bsp, psp, NULL, status, NULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff5.c: In function ‘FlatJournal’: asn2ff5.c:1121:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 1121 | sprintf(buf,"%s%ld ", " ", (long) pat_seqid); | ^~~ asn2ff5.c:1121:16: note: directive argument in the range [1, 2147483647] 1121 | sprintf(buf,"%s%ld ", " ", (long) pat_seqid); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff5.c:1115:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 1115 | sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); | ^~~ asn2ff5.c:1115:16: note: directive argument in the range [1, 2147483647] 1115 | sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); | ^~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff5.c:1140:24: warning: ‘afp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1140 | if (ap == NULL || afp == NULL) { | ^ asn2ff5.c:1051:11: note: ‘afp’ was declared here 1051 | AffilPtr afp; | ^~~ In file included from ../include/ncbi.h:62, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: ../include/ncbistr.h:349:20: warning: ‘temp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 349 | #define StringMove Nlm_StringMove | ^~~~~~~~~~~~~~ asn2ff5.c:1946:23: note: ‘temp’ was declared here 1946 | CharPtr affil=NULL, temp, dup_pages=NULL, retval=NULL; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff6.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff6.c: In function ‘AddGBQual’: asn2ff6.c:1327:18: warning: variable ‘note’ set but not used [-Wunused-but-set-variable] 1327 | GBQualPtr curq, note = NULL; | ^~~~ asn2ff6.c: In function ‘FlatOrganelle’: asn2ff6.c:1483:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1483 | if (! retval ) | ^~ asn2ff6.c:1486:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1486 | break; | ^~~~~ asn2ff6.c: In function ‘BioseqGetGBDivCodeEx’: asn2ff6.c:1700:23: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable] 1700 | Int2 tech, /*UNUSED*/diff, retval = 0; | ^~~~ asn2ff6.c: In function ‘GR_PrintPubs’: asn2ff6.c:2297:41: warning: unused variable ‘stop’ [-Wunused-variable] 2297 | Int4 muid, pmid, pat_seqid=0, start=0, stop=0; | ^~~~ asn2ff6.c:2297:32: warning: unused variable ‘start’ [-Wunused-variable] 2297 | Int4 muid, pmid, pat_seqid=0, start=0, stop=0; | ^~~~~ asn2ff6.c:2297:13: warning: variable ‘pmid’ set but not used [-Wunused-but-set-variable] 2297 | Int4 muid, pmid, pat_seqid=0, start=0, stop=0; | ^~~~ asn2ff6.c:2296:10: warning: unused variable ‘descr’ [-Wunused-variable] 2296 | CharPtr descr = NULL; | ^~~~~ asn2ff6.c: In function ‘ValidateLocus’: asn2ff6.c:2786:17: warning: variable ‘base_locus_max’ set but not used [-Wunused-but-set-variable] 2786 | Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits; | ^~~~~~~~~~~~~~ asn2ff6.c: In function ‘ValidateOtherAccession’: asn2ff6.c:2886:29: warning: unused variable ‘FiveNum’ [-Wunused-variable] 2886 | Boolean FirstLetter=FALSE, FiveNum = FALSE; | ^~~~~~~ asn2ff6.c:2886:10: warning: unused variable ‘FirstLetter’ [-Wunused-variable] 2886 | Boolean FirstLetter=FALSE, FiveNum = FALSE; | ^~~~~~~~~~~ asn2ff6.c: In function ‘AddExtraAccessions’: asn2ff6.c:3498:20: warning: variable ‘ncbi’ set but not used [-Wunused-but-set-variable] 3498 | Boolean /*UNUSED*/ncbi = FALSE; | ^~~~ At top level: asn2ff6.c:2883:13: warning: ‘ValidateOtherAccession’ defined but not used [-Wunused-function] 2883 | static Int2 ValidateOtherAccession(CharPtr new_buf, CharPtr orig_buf) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from asn2ff6.c:347: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff6.c: In function ‘ValidateLocus’: asn2ff6.c:2866:33: warning: ‘exp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2866 | sprintf(buf_ext+num_of_digits-exp, "%ld", (long) num_seg); | ^ asn2ff6.c: In function ‘MakeBaseLocusAwp’: asn2ff6.c:3093:38: warning: ‘num_of_digits’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3093 | base_locus_max = MAX_LOCUS_NAME_LEN - num_of_digits; asn2ff6.c: In function ‘GetLocusPartsAwp’: asn2ff6.c:3449:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3449 | sprintf(gbp->locus, "%-16s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3447:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3447 | sprintf(gbp->locus, "%-10s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3372:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3372 | sprintf(gbp->locus, "%-16s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3370:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3370 | sprintf(gbp->locus, "%-10s", buf_acc); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb1.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb1.c: In function ‘IsWholeWordSubstr’: asn2gnb1.c:2202:19: warning: variable ‘right’ set but not used [-Wunused-but-set-variable] 2202 | Boolean left, right; | ^~~~~ asn2gnb1.c: In function ‘s_LocusGetBaseName’: asn2gnb1.c:2350:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 2350 | else | ^~~~ asn2gnb1.c:2352:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 2352 | newLength = segNameLen - deleteChars; | ^~~~~~~~~ asn2gnb1.c: In function ‘DoOneSection’: asn2gnb1.c:2522:24: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable] 2522 | IntAsn2gbSectPtr iasp; | ^~~~ asn2gnb1.c:2514:24: warning: variable ‘bkmask’ set but not used [-Wunused-but-set-variable] 2514 | BlockMask bkmask; | ^~~~~~ asn2gnb1.c: In function ‘Count2Seg’: asn2gnb1.c:3438:18: warning: variable ‘to’ set but not used [-Wunused-but-set-variable] 3438 | Int4 to; | ^~ asn2gnb1.c:3436:18: warning: variable ‘parent’ set but not used [-Wunused-but-set-variable] 3436 | BioseqPtr parent; | ^~~~~~ asn2gnb1.c: At top level: asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] 3714 | static ModeFlags flagTable [] = { | ^ asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c: In function ‘SeqIdWriteForTable’: asn2gnb1.c:5808:13: warning: variable ‘pdb’ set but not used [-Wunused-but-set-variable] 5808 | pdb = NULL, general = NULL, gi = NULL; | ^~~ asn2gnb1.c:5807:40: warning: variable ‘patent’ set but not used [-Wunused-but-set-variable] 5807 | SeqIdPtr accn = NULL, local = NULL, patent = NULL, | ^~~~~~ In file included from ../include/ncbi.h:58, from asn2gnb1.c:43: asn2gnb1.c: In function ‘DoImmediateFormat’: ../include/ncbistd.h:255:22: warning: comparison between ‘enum ’ and ‘enum ’ [-Wenum-compare] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^~ asn2gnb1.c:6951:19: note: in expansion of macro ‘MAX’ 6951 | max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); | ^~~ asn2gnb1.c:6930:20: warning: variable ‘is_www’ set but not used [-Wunused-but-set-variable] 6930 | Boolean is_www; | ^~~~~~ In file included from ../include/ncbi.h:58, from asn2gnb1.c:43: asn2gnb1.c: In function ‘asn2gnbk_format’: ../include/ncbistd.h:255:22: warning: comparison between ‘enum ’ and ‘enum ’ [-Wenum-compare] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^~ asn2gnb1.c:7072:19: note: in expansion of macro ‘MAX’ 7072 | max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); | ^~~ asn2gnb1.c: In function ‘asn2gnbk_cleanup’: asn2gnb1.c:7118:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable] 7118 | IntAsn2gbSectPtr iasp; | ^~~~ asn2gnb1.c: In function ‘SeqEntryToGnbk’: asn2gnb1.c:7304:22: warning: variable ‘userdata’ set but not used [-Wunused-but-set-variable] 7304 | Pointer userdata = NULL; | ^~~~~~~~ asn2gnb1.c:7299:22: warning: variable ‘gbseq’ set but not used [-Wunused-but-set-variable] 7299 | GBSeqPtr gbseq = NULL; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb1.c:58: asn2gnb1.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb1.c: In function ‘PrintFtableIntervals’: asn2gnb1.c:5463:28: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 62 [-Wformat-overflow=] 5463 | sprintf (str, "%s\t%s\t%s\n", str1, str2, label); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb1.c:43: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 66) into a destination of size 64 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb1.c:5487:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 5487 | sprintf (str, "%s\t%s\n", str1, str2); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb1.c:43: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 65 bytes into a destination of size 64 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb2.c: In function ‘s_LocusAddSuffix’: asn2gnb2.c:217:11: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable] 217 | Char ch; | ^~ asn2gnb2.c: In function ‘AddLocusBlock’: asn2gnb2.c:1361:66: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1361 | } else if ((moltype >= 2 && moltype <= 8) || moltype >= 10 && moltype <= 11) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ asn2gnb2.c: In function ‘IsSuccessor’: asn2gnb2.c:1742:15: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1742 | while (accp != '\0' && prevp != '\0') { | ^~ asn2gnb2.c:1742:10: note: did you mean to dereference the pointer? 1742 | while (accp != '\0' && prevp != '\0') { | ^ asn2gnb2.c:1742:34: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1742 | while (accp != '\0' && prevp != '\0') { | ^~ asn2gnb2.c:1742:28: note: did you mean to dereference the pointer? 1742 | while (accp != '\0' && prevp != '\0') { | ^ asn2gnb2.c: In function ‘IsProjectAccn’: asn2gnb2.c:1767:38: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1767 | for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue; | ^~ asn2gnb2.c:1767:34: note: did you mean to dereference the pointer? 1767 | for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue; | ^ asn2gnb2.c: In function ‘AddDblinkBlock’: asn2gnb2.c:2892:22: warning: variable ‘parentID’ set but not used [-Wunused-but-set-variable] 2892 | Int4 parentID; | ^~~~~~~~ asn2gnb2.c: In function ‘AddSPBlock’: asn2gnb2.c:3409:14: warning: implicit declaration of function ‘PrintDate’ [-Wimplicit-function-declaration] 3409 | string = PrintDate (spb->created); | ^~~~~~~~~ asn2gnb2.c:3409:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 3409 | string = PrintDate (spb->created); | ^ asn2gnb2.c:3417:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 3417 | string = PrintDate (spb->sequpd); | ^ asn2gnb2.c:3424:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 3424 | string = PrintDate (spb->annotupd); | ^ asn2gnb2.c: In function ‘AddSourceOrganismBlock’: asn2gnb2.c:5056:22: warning: variable ‘common’ set but not used [-Wunused-but-set-variable] 5056 | CharPtr common; | ^~~~~~ asn2gnb2.c: In function ‘GetRefsOnBioseq’: asn2gnb2.c:5893:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 5893 | Uint1 strand; | ^~~~~~ asn2gnb2.c:5890:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable] 5890 | Boolean split; | ^~~~~ asn2gnb2.c:5884:22: warning: variable ‘right’ set but not used [-Wunused-but-set-variable] 5884 | Int4 right; | ^~~~~ asn2gnb2.c:5878:22: warning: variable ‘left’ set but not used [-Wunused-but-set-variable] 5878 | Int4 left; | ^~~~ asn2gnb2.c: In function ‘AddLocusBlock’: asn2gnb2.c:239:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 239 | sprintf(segCountStr,"%d",awp->numsegs); | ^~ asn2gnb2.c:239:23: note: directive argument in the range [2, 2147483647] 239 | sprintf(segCountStr,"%d",awp->numsegs); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:244:25: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 4 [-Wformat-overflow=] 244 | sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg); | ^~~~ asn2gnb2.c:244:23: note: directive argument in the range [0, 65535] 244 | sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 32770 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:246:24: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 5 [-Wformat-overflow=] 246 | sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg); | ^~~~ asn2gnb2.c:246:23: note: directive argument in the range [0, 65535] 246 | sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg); | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1514:48: warning: ‘" title="Jump to the comment...’ directive writing 69 bytes into a region of size between 66 and 106 [-Wformat-overflow=] 1514 | sprintf (sect, "
  • Comment
  • ", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 92 and 132 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1518:46: warning: ‘" title="Jump to the feature...’ directive writing 68 bytes into a region of size between 66 and 106 [-Wformat-overflow=] 1518 | sprintf (sect, "
  • Features
  • ", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 91 and 131 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1527:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1527 | sprintf (sect, "
  • Genome
  • ", | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1532:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1532 | sprintf (sect, "
  • Contig
  • ", | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1579:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=] 1579 | sprintf (sect, "
  • Next
  • ", (long) nextGi, seqid); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 67 and 203 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1587:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=] 1587 | sprintf (sect, "
  • Next
  • ", (long) awp->nextGi, seqid); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 67 and 204 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1600:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=] 1600 | sprintf (sect, "
  • Previous
  • ", (long) prevGi, seqid); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 71 and 207 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1608:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=] 1608 | sprintf (sect, "
  • Previous
  • ", (long) awp->prevGi, seqid); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 71 and 208 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb3.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb3.c: In function ‘GetStatusForRefTrack’: asn2gnb3.c:796:22: warning: variable ‘urf’ set but not used [-Wunused-but-set-variable] 796 | UserFieldPtr ufp, urf = NULL; | ^~~ asn2gnb3.c: In function ‘AddCommentBlock’: asn2gnb3.c:2656:22: warning: variable ‘is_wgs’ set but not used [-Wunused-but-set-variable] 2656 | Boolean is_wgs = FALSE; | ^~~~~~ asn2gnb3.c: In function ‘GetSourcesOnBioseq’: asn2gnb3.c:5472:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 5472 | Uint1 strand; | ^~~~~~ asn2gnb3.c:5470:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 5470 | Int4 start; | ^~~~~ asn2gnb3.c:5468:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable] 5468 | Boolean split; | ^~~~~ asn2gnb3.c: In function ‘AddSourceFeatBlock’: asn2gnb3.c:5989:22: warning: unused variable ‘sip’ [-Wunused-variable] 5989 | SeqIdPtr sip; | ^~~ asn2gnb3.c: In function ‘GetFeatsOnCdsProduct’: asn2gnb3.c:6446:22: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable] 6446 | Boolean isRefSeq; | ^~~~~~~~ asn2gnb3.c: In function ‘GetRemoteFeatsOnCdsProduct’: asn2gnb3.c:6595:20: warning: variable ‘lastsfp’ set but not used [-Wunused-but-set-variable] 6595 | SeqFeatPtr lastsfp; | ^~~~~~~ asn2gnb3.c:6594:20: warning: variable ‘lastsap’ set but not used [-Wunused-but-set-variable] 6594 | SeqAnnotPtr lastsap; | ^~~~~~~ asn2gnb3.c:6593:20: warning: variable ‘lastright’ set but not used [-Wunused-but-set-variable] 6593 | Int4 lastright; | ^~~~~~~~~ asn2gnb3.c:6592:20: warning: variable ‘lastleft’ set but not used [-Wunused-but-set-variable] 6592 | Int4 lastleft; | ^~~~~~~~ asn2gnb3.c:6591:20: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable] 6591 | Boolean isRefSeq; | ^~~~~~~~ asn2gnb3.c: In function ‘GetFeatsOnBioseq’: asn2gnb3.c:6895:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 6895 | Int4 start; | ^~~~~ asn2gnb3.c:6866:22: warning: variable ‘icp’ set but not used [-Wunused-but-set-variable] 6866 | IntCdsBlockPtr icp; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb3.c:57: asn2gnb3.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb3.c:1582:16: warning: ‘nsWGSGapsString’ defined but not used [-Wunused-variable] 1582 | static CharPtr nsWGSGapsString = "The strings of n's in this record represent gaps between contigs or uncallable bases."; | ^~~~~~~~~~~~~~~ asn2gnb3.c:1581:16: warning: ‘nsAreGapsString’ defined but not used [-Wunused-variable] 1581 | static CharPtr nsAreGapsString = "The strings of n's in this record represent gaps between contigs, and the length of each string corresponds to the length of the gap."; | ^~~~~~~~~~~~~~~ asn2gnb3.c: In function ‘AddCommentBlock’: asn2gnb3.c:3429:29: warning: ‘nm’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3429 | if (IS_protdb_accession (nm)) { | ^~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb4.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb4.c: In function ‘FormatFeatureBlockQuals’: asn2gnb4.c:3723:50: warning: "/*" within comment [-Wcomment] 3723 | StringChr (str + 1, '(') == NULL /* && StringChr (str, ',') != NULL */) { | asn2gnb4.c:3101:24: warning: variable ‘split’ set but not used [-Wunused-but-set-variable] 3101 | Boolean split; | ^~~~~ asn2gnb4.c:3042:24: warning: variable ‘at_end’ set but not used [-Wunused-but-set-variable] 3042 | Boolean at_end = FALSE; | ^~~~~~ asn2gnb4.c: In function ‘FF_asn2gb_www_featkey_Ex’: asn2gnb4.c:5325:16: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable] 5325 | CharPtr prefix = "?"; | ^~~~~~ asn2gnb4.c: In function ‘FormatFeatureBlockEx’: asn2gnb4.c:6572:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable] 6572 | Boolean split; | ^~~~~ In file included from ../include/ncbi.h:58, from asn2gnb4.c:42: asn2gnb4.c: In function ‘DoImmediateRemoteFeatureFormat’: ../include/ncbistd.h:255:22: warning: comparison between ‘enum ’ and ‘enum ’ [-Wenum-compare] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^~ asn2gnb4.c:8796:19: note: in expansion of macro ‘MAX’ 8796 | max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); | ^~~ asn2gnb4.c: In function ‘FormatFeatureQuals’: ../include/ncbistd.h:255:22: warning: comparison between ‘enum ’ and ‘enum ’ [-Wenum-compare] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^~ asn2gnb4.c:8869:19: note: in expansion of macro ‘MAX’ 8869 | max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb4.c:57: asn2gnb4.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb4.c: In function ‘FormatFeatureBlockEx’: asn2gnb4.c:7695:26: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7695 | oldscope = SeqEntrySetScope (sep); | ^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb5.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb5.c: In function ‘FormatCitBookArt’: asn2gnb5.c:2108:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 2108 | ValNodePtr vnp; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb5.c:57: asn2gnb5.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb5.c: In function ‘FormatReferenceBlock’: asn2gnb5.c:2553:22: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 2553 | sprintf(buf,"%s%ld ", " ", (long) pat_seqid); | ^~~ asn2gnb5.c:2553:19: note: directive argument in the range [1, 2147483647] 2553 | sprintf(buf,"%s%ld ", " ", (long) pat_seqid); | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb5.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb5.c:2550:22: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 2550 | sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); | ^~~ asn2gnb5.c:2550:19: note: directive argument in the range [1, 2147483647] 2550 | sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); | ^~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb5.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb6.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gnb6.c: In function ‘FlatLocElement’: asn2gnb6.c:2546:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2546 | if (sintp->to > 0 && | ~~~~~~~~~~~~~~^~ 2547 | (sintp->to != sintp->from || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2548 | sintp->if_from != NULL || | ~~~~~~~~~~~~~~~~~~~~~~~~~ 2549 | sintp->if_to != NULL) || | ~~~~~~~~~~~~~~~~~~~~~ asn2gnb6.c: In function ‘FormatContigBlock’: asn2gnb6.c:5701:20: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable] 5701 | DeltaSeqPtr dspnext; | ^~~~~~~ asn2gnb6.c: In function ‘ProcessGapSpecialFormat’: asn2gnb6.c:6041:13: warning: unused variable ‘sip’ [-Wunused-variable] 6041 | SeqIdPtr sip; | ^~~ asn2gnb6.c: In function ‘FormatSequenceBlock’: asn2gnb6.c:6168:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable] 6168 | IntAsn2gbSectPtr iasp; | ^~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb6.c:57: asn2gnb6.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2gnb6.c:76:16: warning: ‘link_lat_lon’ defined but not used [-Wunused-variable] 76 | static CharPtr link_lat_lon = "https://www.ncbi.nlm.nih.gov/projects/Sequin/latlonview.html?"; | ^~~~~~~~~~~~ asn2gnb6.c: In function ‘FormatSourceFeatBlock’: asn2gnb6.c:4322:22: warning: ‘+’ directive writing 1 byte into a region of size between 0 and 128 [-Wformat-overflow=] 4322 | sprintf (tmp, "%s%s+%s%s", ns, tokens [0], ew, tokens [2]); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb6.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 131) into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ftusrstr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ftusrstr.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbfeat.c gbfeat.c: In function ‘CkLabelType’: gbfeat.c:1465:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1465 | for (str = bptr; *str != '\0' && IS_ALPHA(*str) || IS_DIGIT(*str) arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbftglob.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbparint.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/parsegb.h:57, from gbparint.c:102: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gbparint.c: In function ‘Nlm_gbparselex’: gbparint.c:2134:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2134 | if (*current_col != '\0') | ^ gbparint.c: In function ‘Nlm_gbparselex_ver’: gbparint.c:2520:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2520 | if (*current_col != '\0') | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF utilpars.c utilpars.c:112:39: warning: missing braces around initializer [-Wmissing-braces] 112 | ParFlat_AA_array[ParFlat_TOTAL_AA] = { | ^ 113 | "Ala", 'A', | { } 114 | "Asx", 'B', | { } 115 | "Cys", 'C', | { } 116 | "Asp", 'D', | { } 117 | "Glu", 'E', | { } 118 | "Phe", 'F', | { } 119 | "Gly", 'G', | { } 120 | "His", 'H', | { } 121 | "Ile", 'I', | { } 122 | "Xle", 'J', /* was - notice no 'J', breaks naive meaning of index -Karl */ | { } 123 | "Lys", 'K', | { } 124 | "Leu", 'L', | { } 125 | "Met", 'M', | { } 126 | "Asn", 'N', | { } 127 | "Pyl", 'O', /* was - no 'O' */ | { } 128 | "Pro", 'P', | { } 129 | "Gln", 'Q', | { } 130 | "Arg", 'R', | { } 131 | "Ser", 'S', | { } 132 | "Thr", 'T', | { } 133 | "Val", 'V', | { } 134 | "Trp", 'W', | { } 135 | "Sec", 'U', /* was - not in iupacaa */ | { } 136 | "Xxx", 'X', | { } 137 | "Tyr", 'Y', | { } 138 | "Glx", 'Z', | { } 139 | "TERM", '*', /* not in iupacaa */ /*changed by Tatiana 06.07.95?`*/ | { } 140 | "OTHER", 'X'}; | { } arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF utilpub.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from utilpub.c:13: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ utilpub.c: In function ‘FindCit’: utilpub.c:998:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable] 998 | ImpFeatPtr /*UNUSED*/ifp; | ^~~ utilpub.c: In function ‘ChangeCitQual’: utilpub.c:1053:53: warning: variable ‘pub’ set but not used [-Wunused-but-set-variable] 1053 | ValNodePtr vnp, pubset = NULL, pub_min, /*UNUSED*/pub; | ^~~ utilpub.c:1052:34: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable] 1052 | ValNodePtr PNTR vnpp, /*UNUSED*/descr; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ffprint.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from ffprint.c:127: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ffprint.c: In function ‘FFBSPrint’: ffprint.c:347:19: warning: unused variable ‘byte_sp’ [-Wunused-variable] 347 | ByteStorePtr byte_sp = NULL; | ^~~~~~~ At top level: ffprint.c:420:16: warning: ‘ff_print_insert’ defined but not used [-Wunused-function] 420 | static CharPtr ff_print_insert(CharPtr str, CharPtr ins) | ^~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from ffprint.c:127: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF wprint.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from wprint.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ wprint.c: In function ‘LocPrintGenome’: wprint.c:1696:14: warning: unused variable ‘sep’ [-Wunused-variable] 1696 | SeqEntryPtr sep = NULL; | ^~~ wprint.c:1695:25: warning: unused variable ‘b’ [-Wunused-variable] 1695 | BioseqPtr bsp = NULL, b = NULL; | ^ wprint.c:1695:13: warning: unused variable ‘bsp’ [-Wunused-variable] 1695 | BioseqPtr bsp = NULL, b = NULL; | ^~~ wprint.c:1692:34: warning: unused variable ‘temp’ [-Wunused-variable] 1692 | static Char buf[14], val[166], temp[166]; | ^~~~ At top level: wprint.c:1692:34: warning: ‘temp’ defined but not used [-Wunused-variable] wprint.c:79:13: warning: ‘link_gdb_map’ defined but not used [-Wunused-variable] 79 | static Char link_gdb_map[MAX_WWWBUF]; | ^~~~~~~~~~~~ wprint.c:77:13: warning: ‘link_pir’ defined but not used [-Wunused-variable] 77 | static Char link_pir[MAX_WWWBUF]; | ^~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from wprint.c:51: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ wprint.c: In function ‘PrintDate’: wprint.c:188:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 188 | sprintf(day, "%d", (int) (date -> data[3] )); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from wprint.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wprint.c: In function ‘www_db_xref’: wprint.c:969:20: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 4 and 9 [-Wformat-overflow=] 969 | sprintf(id, "%d%d", id1, id2); | ^~ wprint.c:969:17: note: directive argument in the range [-32768, 32767] 969 | sprintf(id, "%d%d", id1, id2); | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from wprint.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 13 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from wprint.c:46: wprint.c: In function ‘www_xref’: ../include/ncbistr.h:331:19: warning: ‘prefix’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ wprint.c:1358:19: note: ‘prefix’ was declared here 1358 | CharPtr s, link, prefix, ss; | ^~~~~~ In file included from ../include/ncbi.h:62, from wprint.c:46: ../include/ncbistr.h:331:19: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ wprint.c:1358:13: note: ‘link’ was declared here 1358 | CharPtr s, link, prefix, ss; | ^~~~ wprint.c: In function ‘PrintSPBlock’: wprint.c:1570:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1570 | AddLink(s); | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF satutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/satutil.h:12, from satutil.c:87: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ satutil.c: In function ‘CopyFeatureFromAlign’: satutil.c:1011:10: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable] 1011 | Boolean check_gap; | ^~~~~~~~~ At top level: satutil.c:168:16: warning: ‘bk_map_one_location’ defined but not used [-Wunused-function] 168 | static Boolean bk_map_one_location(SeqLocPtr source_loc, SeqAlignPtr align, SeqIdPtr target_sip, Boolean check_gap, Int4Ptr r_start, Int4Ptr r_stop, SeqLocPtr PNTR head_slp) | ^~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from seqmgr.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqmgr.c: In function ‘SeqEntrySetScope’: seqmgr.c:311:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 311 | Boolean found; | ^~~~~ seqmgr.c: In function ‘ClearBioseqFindCache’: seqmgr.c:897:14: warning: variable ‘smp’ set but not used [-Wunused-but-set-variable] 897 | SeqMgrPtr smp; | ^~~ seqmgr.c: In function ‘GetUniGeneIDForSeqId’: seqmgr.c:3676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3676 | if(StringCmp(db_tag->db, "BSNR") == 0) | ^~ seqmgr.c:3678:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3678 | if(StringCmp(db_tag->db, "HUMGEN") == 0) | ^~ seqmgr.c: In function ‘SeqMgrGetExtraDataForOmdp’: seqmgr.c:3736:14: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable] 3736 | ObjMgrPtr omp; | ^~~ seqmgr.c: In function ‘CheckForTransSplice’: seqmgr.c:5657:14: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 5657 | SeqLocPtr prev, tmp; | ^~~~ seqmgr.c: In function ‘SeqEntryAsnOut’: seqmgr.c:11799:41: warning: variable ‘aopp_desc’ set but not used [-Wunused-but-set-variable] 11799 | AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL; | ^~~~~~~~~ seqmgr.c:11799:23: warning: variable ‘aopp_feat’ set but not used [-Wunused-but-set-variable] 11799 | AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL; | ^~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from seqmgr.c:63: seqmgr.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from objmgr.c:51: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmgr.c: In function ‘ObjMgrReapOne’: objmgr.c:2727:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2727 | if (omp->reaping) /* protect against recursion caused by ObjMgrSendMsg */ | ^~ objmgr.c:2730:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2730 | lowest = UINT4_MAX; | ^~~~~~ objmgr.c: In function ‘ObjMgrDeSelectStructFunc’: objmgr.c:3767:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3767 | if (next != NULL) | ^~ objmgr.c:3770:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3770 | ObjMgrSendDeSelMsg (omp, ssp->entityID, ssp->itemID, ssp->itemtype, ssp->regiontype, ssp->region); | ^~~~~~~~~~~~~~~~~~ objmgr.c: In function ‘ObjMgrSelectFunc2’: objmgr.c:4031:22: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 4031 | Boolean retval = FALSE; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gather.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from gather.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gather.c: In function ‘AttachDataProc’: gather.c:4827:30: warning: variable ‘into_seqentry’ set but not used [-Wunused-but-set-variable] 4827 | Boolean no_good = FALSE, into_seqentry = FALSE; | ^~~~~~~~~~~~~ gather.c: In function ‘GatherSeqFeat’: gather.c:415:45: warning: ‘newid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 415 | if ((head == NULL) || (seq_loc == NULL) || (newid == NULL)) return NULL; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ gather.c:1414:14: note: ‘newid’ was declared here 1414 | SeqIdPtr newid; | ^~~~~ gather.c:1495:17: warning: ‘numcheck’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1495 | for (j = 0; ((j < numcheck) && (! takeit) && (!stop_now)); j++) | ^~~ gather.c:1530:86: warning: ‘max_interval’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1530 | lrdp = (GatherRangePtr)MemNew((size_t)((max_interval + 20) * sizeof(GatherRange))); | ^ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from gather.c:44: ../include/ncbimem.h:232:23: warning: ‘lrdp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ gather.c:1404:38: note: ‘lrdp’ was declared here 1404 | GatherRangePtr rdp = NULL, trdp, lrdp; | ^~~~ gather.c: In function ‘gather_align_data’: gather.c:2280:12: warning: ‘h_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2280 | if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gather.c:2280:11: warning: ‘h_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2280 | if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/ | ^ gather.c:2219:15: warning: ‘master_loc’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2219 | SeqLocPtr master_loc, m_loc; | ^~~~~~~~~~ gather.c:2218:10: warning: ‘mag_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2218 | Int4 mag_val; /*the magnification value */ | ^~~~~~~ gather.c: In function ‘GatherBioseqFunc’: gather.c:3307:53: warning: ‘tlen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3307 | rdp->right = offset + tlen - 1; | ~~~~~~~^~~~~~ gather.c:3280:39: warning: ‘trunc_r’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3280 | if (trunc_r) | ^ gather.c:3285:40: warning: ‘trunc_l’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3285 | if (trunc_l) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accmmdbs.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from accmmdbs.c:120: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF acccn3ds.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from acccn3ds.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lsqfetch.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/lsqfetch.h:110, from lsqfetch.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ lsqfetch.c: In function ‘ChangeLocalToGenbank’: lsqfetch.c:1403:21: warning: ‘%s’ directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=] 1403 | sprintf (tmp, "gb|%s", id); | ^~ ~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/lsqfetch.h:110, from lsqfetch.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 44 bytes into a destination of size 41 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF findrepl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from findrepl.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF codon.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/codon.h:61, from codon.c:2: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ codon.c: In function ‘make_cds_paragraph’: codon.c:262:7: warning: variable ‘space_len’ set but not used [-Wunused-but-set-variable] 262 | Int4 space_len, i; | ^~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jzcoll.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from jzcoll.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ jzcoll.c: In function ‘load_default_matrix’: jzcoll.c:99:13: warning: array subscript has type ‘char’ [-Wchar-subscripts] 99 | ss[pchars[i]][pchars[j]] = webb_blosum62[i][j]; | ~~~~~~^~~ jzcoll.c:99:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 99 | ss[pchars[i]][pchars[j]] = webb_blosum62[i][j]; | ~~~~~~^~~ jzcoll.c:101:12: warning: array subscript has type ‘char’ [-Wchar-subscripts] 101 | ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4; | ~~~~~~^~~ jzcoll.c:101:38: warning: array subscript has type ‘char’ [-Wchar-subscripts] 101 | ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4; | ~~~~~~^~~ jzcoll.c: In function ‘GetUseThisGi’: jzcoll.c:143:10: warning: unused variable ‘retval’ [-Wunused-variable] 143 | Boolean retval=FALSE; | ^~~~~~ jzcoll.c: In function ‘buffer_for_feature’: jzcoll.c:514:7: warning: unused variable ‘i’ [-Wunused-variable] 514 | Int2 i=0; | ^ jzcoll.c: In function ‘ProcessTextInsertion’: jzcoll.c:878:7: warning: variable ‘last_ins’ set but not used [-Wunused-but-set-variable] 878 | Int4 last_ins; | ^~~~~~~~ jzcoll.c: In function ‘satcollfunc’: jzcoll.c:1723:12: warning: variable ‘head’ set but not used [-Wunused-but-set-variable] 1723 | SeqLocPtr head; | ^~~~ jzcoll.c:1721:8: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 1721 | Uint1 strand; | ^~~~~~ jzcoll.c:1720:7: warning: variable ‘current_pos’ set but not used [-Wunused-but-set-variable] 1720 | Int4 current_pos; | ^~~~~~~~~~~ jzcoll.c:1714:12: warning: unused variable ‘slp’ [-Wunused-variable] 1714 | SeqLocPtr slp = NULL; | ^~~ jzcoll.c: In function ‘coll_align_data’: jzcoll.c:2631:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 2631 | sprintf(buf, "%d", gilist->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld jzcoll.c: In function ‘collect_anpnode_with_option’: jzcoll.c:3053:13: warning: unused variable ‘prev’ [-Wunused-variable] 3053 | ValNodePtr prev = NULL; | ^~~~ jzcoll.c: In function ‘ck_seqfeat_extra’: jzcoll.c:3414:10: warning: unused variable ‘has_gb’ [-Wunused-variable] 3414 | Boolean has_gb = FALSE, has_med = FALSE; | ^~~~~~ jzcoll.c: In function ‘collseqfunc’: jzcoll.c:3768:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3768 | if(omtp->labelfunc !=NULL) | ^~ jzcoll.c:3770:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3770 | fnp->landmark = check_feature_for_landmark(chp->thislabel, chp->gdata, sfp, gcp, chp->priority); | ^~~ jzcoll.c: In function ‘load_open_close_sts_mark’: jzcoll.c:4010:10: warning: variable ‘collected’ set but not used [-Wunused-but-set-variable] 4010 | Boolean collected = FALSE; | ^~~~~~~~~ jzcoll.c: In function ‘FeatNodeCompProc’: jzcoll.c:4225:20: warning: variable ‘gr2’ set but not used [-Wunused-but-set-variable] 4225 | GatherRange gr1, gr2; | ^~~ jzcoll.c:4225:15: warning: variable ‘gr1’ set but not used [-Wunused-but-set-variable] 4225 | GatherRange gr1, gr2; | ^~~ At top level: jzcoll.c:2316:16: warning: ‘stop_collecting_alignment’ defined but not used [-Wunused-function] 2316 | static Boolean stop_collecting_alignment(ValNodePtr anp_list, Int4 max_num) | ^~~~~~~~~~~~~~~~~~~~~~~~~ jzcoll.c:1654:16: warning: ‘collect_sequence_label’ defined but not used [-Wunused-function] 1654 | static Boolean collect_sequence_label(Uint1 format) | ^~~~~~~~~~~~~~~~~~~~~~ jzcoll.c: In function ‘load_text.isra’: jzcoll.c:421:41: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 421 | stdaa_res = SeqMapTableConvert(smtp, m_res); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jzmisc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/jzmisc.h:86, from jzmisc.c:23: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF maputil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from maputil.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ maputil.c: In function ‘load_gene_list’: maputil.c:690:8: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 690 | Uint1 val; | ^~~ maputil.c: In function ‘gmarkfunc’: maputil.c:985:13: warning: variable ‘syn’ set but not used [-Wunused-but-set-variable] 985 | ValNodePtr syn = NULL; | ^~~ maputil.c: In function ‘get_location_for_query’: cc1: warning: function may return address of local variable [-Wreturn-local-addr] maputil.c:1190:9: note: declared here 1190 | SeqLoc sl; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mconsist.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/mconsist.h:4, from mconsist.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF macroapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from macroapi.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ macroapi.c: In function ‘AdvancedStringCompare’: macroapi.c:4463:23: warning: variable ‘init_target_match_len’ set but not used [-Wunused-but-set-variable] 4463 | Int4 len1, len2, init_target_match_len = 0, target_match_len = 0; | ^~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function ‘RemoveGBQualMatch’: macroapi.c:6981:27: warning: variable ‘does_match’ set but not used [-Wunused-but-set-variable] 6981 | Boolean rval = FALSE, does_match, do_remove; | ^~~~~~~~~~ macroapi.c: In function ‘ParseCodonsRecognizedFromCommaDelimitedList’: macroapi.c:7726:41: warning: pointer targets in passing argument 1 of ‘ExpandWobbleCodon’ differ in signedness [-Wpointer-sign] 7726 | wobble_list = ExpandWobbleCodon(codon); | ^~~~~ | | | Nlm_Uint1 * {aka unsigned char *} macroapi.c:7636:46: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} 7636 | static ValNodePtr ExpandWobbleCodon (CharPtr codon) macroapi.c: In function ‘GetQualFromFeatureAnyType’: macroapi.c:8537:8: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 8536 | if (str == NULL | ~~~~~~~~~~~ 8537 | && (field->choice == FeatQualChoice_legal_qual && field->data.intvalue == Feat_qual_legal_pseudo) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:8681:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 8681 | sprintf (buf, "%d", vnp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘SetNameInPrimerList’: macroapi.c:10682:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable] 10682 | PCRPrimerPtr pp, prev_pp = NULL; | ^~~~~~~ macroapi.c: In function ‘SetSeqInPrimerList’: macroapi.c:10703:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable] 10703 | PCRPrimerPtr pp, prev_pp = NULL; | ^~~~~~~ macroapi.c: In function ‘GetGenomeProjectIdFromBioseq’: macroapi.c:12881:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 12881 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘RemoveGenomeProjectIdFromBioseq’: macroapi.c:12916:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 12916 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘SetGenomeProjectIdOnBioseq’: macroapi.c:12957:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 12957 | sprintf (buf, "%d", ufp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘GetPubFieldFromPub’: macroapi.c:15043:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 15043 | sprintf (str, "%d", the_pub->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘GetCitListsForSeqEntry’: macroapi.c:15825:19: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 15825 | Uint2 entityID; | ^~~~~~~~ macroapi.c:15823:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable] 15823 | Boolean okay; | ^~~~ macroapi.c: In function ‘GetPubclassQualFromPub’: macroapi.c:18324:11: warning: unused variable ‘str’ [-Wunused-variable] 18324 | CharPtr str = NULL; | ^~~ macroapi.c: In function ‘GetPubMLStatus’: macroapi.c:18681:14: warning: variable ‘csp’ set but not used [-Wunused-but-set-variable] 18681 | CitSubPtr csp; | ^~~ macroapi.c: In function ‘CollectDBLinkObjectsForApply’: macroapi.c:20029:72: warning: unused variable ‘tmp_tail’ [-Wunused-variable] 20029 | ValNodePtr target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp; | ^~~~~~~~ macroapi.c:20029:55: warning: unused variable ‘tmp_list’ [-Wunused-variable] 20029 | ValNodePtr target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp; | ^~~~~~~~ macroapi.c: In function ‘DoConvertActionToObjectListEx’: macroapi.c:20844:20: warning: unused variable ‘already_added’ [-Wunused-variable] 20844 | Boolean already_added, field_change; | ^~~~~~~~~~~~~ macroapi.c: In function ‘ApplyPartial5SetActionToSeqFeat’: macroapi.c:25749:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 25749 | Uint1 strand; | ^~~~~~ macroapi.c: In function ‘ApplyPartial3SetActionToSeqFeat’: macroapi.c:25872:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 25872 | Uint1 strand; | ^~~~~~ macroapi.c: In function ‘ApplyPartialBothSetActionToSeqFeat’: macroapi.c:25939:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 25939 | Uint1 strand; | ^~~~~~ macroapi.c: In function ‘FindPosBeforeFeat’: macroapi.c:26236:15: warning: variable ‘regulator’ set but not used [-Wunused-but-set-variable] 26236 | SeqFeatPtr regulator = NULL, candidate; | ^~~~~~~~~ macroapi.c: In function ‘PerformAutofixInSeqEntry’: macroapi.c:29471:8: warning: unused variable ‘num_created’ [-Wunused-variable] 29471 | Int4 num_created = 0; | ^~~~~~~~~~~ macroapi.c: In function ‘AddFileDescriptors’: macroapi.c:29871:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 29871 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ^~~ macroapi.c: In function ‘ApplyMacroToSeqEntryExEx’: macroapi.c:31907:28: warning: too many arguments for format [-Wformat-extra-args] 31907 | fprintf (log_fp, "Instantiated protein titles\n", num); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function ‘PreprocessAddDescriptorListMacro’: macroapi.c:32020:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 32020 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ^~~ macroapi.c: In function ‘FieldTypeFromString’: macroapi.c:32370:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 32370 | if (ft == NULL && StringsAreEquivalent(str, "location") || StringsAreEquivalent(str, "genome")) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function ‘SummarizeRemoveOutsideAction’: macroapi.c:32939:11: warning: unused variable ‘case_insensitive’ [-Wunused-variable] 32939 | CharPtr case_insensitive = " (case insensitive)"; | ^~~~~~~~~~~~~~~~ macroapi.c: In function ‘GetObjectTableForTabTable’: macroapi.c:37508:63: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 37508 | ValNodePtr obj_table = NULL, obj_row, last_obj = NULL, tmp, last = NULL; | ^~~~ macroapi.c: In function ‘FormatMultipleDestinationErrorMessage’: macroapi.c:37987:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 37987 | sprintf (buf, "%d", vnp->data.intvalue + 1); | ~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macroapi.c: In function ‘CheckObjTableForExistingText’: macroapi.c:38084:14: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 38084 | Uint2 entityID; | ^~~~~~~~ macroapi.c: In function ‘FixSuspectProductNamesInEntrezGene’: macroapi.c:40352:18: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable] 40352 | CharPtr prefix = NULL; | ^~~~~~ In file included from ../include/tax3api.h:51, from macroapi.c:67: macroapi.c: At top level: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ macroapi.c:37233:16: warning: ‘IsFieldTypeProteinDesc’ defined but not used [-Wunused-function] 37233 | static Boolean IsFieldTypeProteinDesc (FieldTypePtr ft) | ^~~~~~~~~~~~~~~~~~~~~~ macroapi.c:27097:13: warning: ‘GetDescriptorTypeFromDescriptorChoice’ defined but not used [-Wunused-function] 27097 | static Int4 GetDescriptorTypeFromDescriptorChoice (Uint1 descriptor_choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:21298:13: warning: ‘GetFieldsFromAECR’ defined but not used [-Wunused-function] 21298 | static void GetFieldsFromAECR (AECRActionPtr act, FieldTypePtr PNTR pField, ValNodePtr PNTR pFieldPair) | ^~~~~~~~~~~~~~~~~ macroapi.c:20787:16: warning: ‘NoFieldChange’ defined but not used [-Wunused-function] 20787 | static Boolean NoFieldChange (CharPtr new_val, ValNodePtr vnp, FieldTypePtr field_from, StringConstraintPtr scp, BatchExtraPtr batch_extra) | ^~~~~~~~~~~~~ macroapi.c:16014:13: warning: ‘InitBatchExtraForAECRActionAndObjectList’ defined but not used [-Wunused-function] 16014 | static void InitBatchExtraForAECRActionAndObjectList (BatchExtraPtr batch_extra, AECRActionPtr action, ValNodePtr object_list) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:10389:16: warning: ‘HasMultiplePrimerSets’ defined but not used [-Wunused-function] 10389 | static Boolean HasMultiplePrimerSets (CharPtr value) | ^~~~~~~~~~~~~~~~~~~~~ macroapi.c:5482:16: warning: ‘DoesLocationMatchConstraint’ defined but not used [-Wunused-function] 5482 | static Boolean DoesLocationMatchConstraint (SeqLocPtr slp, LocationConstraintPtr lcp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:4590:13: warning: ‘TestAdvancedStringMatch’ defined but not used [-Wunused-function] 4590 | static void TestAdvancedStringMatch (void) | ^~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:2806:13: warning: ‘OriginFromOriginName’ defined but not used [-Wunused-function] 2806 | static Int4 OriginFromOriginName (CharPtr origin_name) | ^~~~~~~~~~~~~~~~~~~~ macroapi.c:1200:16: warning: ‘IsObjectAppropriateForFieldPair’ defined but not used [-Wunused-function] 1200 | static Boolean IsObjectAppropriateForFieldPair (Uint1 choice, Pointer data, FieldPairTypePtr fieldpair) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function ‘AlsoChangeMrnaForObject’: macroapi.c:20637:10: warning: ‘mrna’ may be used uninitialized in this function [-Wmaybe-uninitialized] 20637 | if (mrna != NULL) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpedit.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from salpedit.c:2: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salpedit.c: In function ‘SeqAlignInsert’: salpedit.c:162:12: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable] 162 | StdSegPtr ssp; | ^~~ salpedit.c:161:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable] 161 | DenseDiagPtr ddp; | ^~~ At top level: salpedit.c:4120:18: warning: ‘build_slp_for_gcontig’ defined but not used [-Wunused-function] 4120 | static SeqLocPtr build_slp_for_gcontig (BioseqPtr gcontig_bsp, SeqIdPtr gcontig_sip) | ^~~~~~~~~~~~~~~~~~~~~ salpedit.c:4073:17: warning: ‘get_best_id’ defined but not used [-Wunused-function] 4073 | static SeqIdPtr get_best_id(BioseqPtr bsp) | ^~~~~~~~~~~ salpedit.c:4046:16: warning: ‘second_seq_has_gap’ defined but not used [-Wunused-function] 4046 | static Boolean second_seq_has_gap(BioseqPtr s_bsp) | ^~~~~~~~~~~~~~~~~~ salpedit.c:4016:18: warning: ‘dup_mul_locs’ defined but not used [-Wunused-function] 4016 | static SeqLocPtr dup_mul_locs(SeqLocPtr slp) | ^~~~~~~~~~~~ salpedit.c:3968:18: warning: ‘create_fake_bioseq’ defined but not used [-Wunused-function] 3968 | static BioseqPtr create_fake_bioseq(SeqLocPtr seq_loc, CharPtr fake_name) | ^~~~~~~~~~~~~~~~~~ salpedit.c:3937:13: warning: ‘reverse_seqloc’ defined but not used [-Wunused-function] 3937 | static void reverse_seqloc (SeqLocPtr s_loc) | ^~~~~~~~~~~~~~ salpedit.c:3850:13: warning: ‘save_output’ defined but not used [-Wunused-function] 3850 | static void save_output (SeqIdPtr sip, CharPtr f_name, SeqAlignPtr align) | ^~~~~~~~~~~ salpedit.c:3836:13: warning: ‘get_align_list_len’ defined but not used [-Wunused-function] 3836 | static Int4 get_align_list_len(SeqAlignPtr align) | ^~~~~~~~~~~~~~~~~~ salpedit.c:2939:20: warning: ‘open_annot’ defined but not used [-Wunused-function] 2939 | static SeqAnnotPtr open_annot(CharPtr f_name) | ^~~~~~~~~~ salpedit.c:2835:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function] 2835 | static void SeqAnnotWrite(SeqAlignPtr align) | ^~~~~~~~~~~~~ salpedit.c:2653:16: warning: ‘FigureAlignRange’ defined but not used [-Wunused-function] 2653 | static Boolean FigureAlignRange(SeqAlignPtr align, SeqLocPtr m_loc, SeqLocPtr s_loc) | ^~~~~~~~~~~~~~~~ salpedit.c:1665:16: warning: ‘free_diag_in_list’ defined but not used [-Wunused-function] 1665 | static Boolean free_diag_in_list(ValNodePtr ddp_list, DenseDiagPtr ddp) | ^~~~~~~~~~~~~~~~~ salpedit.c:1605:16: warning: ‘is_overlap’ defined but not used [-Wunused-function] 1605 | static Boolean is_overlap(BoolPtr status, Int4 from, Int4 len) | ^~~~~~~~~~ salpedit.c:1560:13: warning: ‘filter_wrong_orientation’ defined but not used [-Wunused-function] 1560 | static void filter_wrong_orientation (SeqAlignPtr align, Boolean same_orient) | ^~~~~~~~~~~~~~~~~~~~~~~~ salpedit.c:1479:16: warning: ‘filter_this_seg’ defined but not used [-Wunused-function] 1479 | static Boolean filter_this_seg (DenseDiagPtr curr, DenseDiagPtr PNTR h_list, Int2 order) | ^~~~~~~~~~~~~~~ salpedit.c:1422:16: warning: ‘convert_ddp_to_array’ defined but not used [-Wunused-function] 1422 | static Int4Ptr convert_ddp_to_array (ValNodePtr ddp_list, Uint1 strand, Int2 s_order, Int4Ptr p_num) | ^~~~~~~~~~~~~~~~~~~~ salpedit.c:1387:14: warning: ‘has_too_much_overlap’ defined but not used [-Wunused-function] 1387 | static Uint1 has_too_much_overlap (Int4 start_1, Int4 stop_1, Int4 start_2, Int4 stop_2) | ^~~~~~~~~~~~~~~~~~~~ salpedit.c:1281:13: warning: ‘attach_new_align’ defined but not used [-Wunused-function] 1281 | static void attach_new_align(SeqAlignPtr new_salp, SeqAlignPtr PNTR old) { | ^~~~~~~~~~~~~~~~ salpedit.c:1169:20: warning: ‘JZSeqAlignMerge’ defined but not used [-Wunused-function] 1169 | static SeqAlignPtr JZSeqAlignMerge(SeqAlignPtr f_align, SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr t_align) | ^~~~~~~~~~~~~~~ salpedit.c:254:16: warning: ‘is_gap_segment’ defined but not used [-Wunused-function] 254 | static Boolean is_gap_segment(Int4Ptr c_starts, Int2 dim) | ^~~~~~~~~~~~~~ salpedit.c:158:20: warning: ‘SeqAlignInsert’ defined but not used [-Wunused-function] 158 | static SeqAlignPtr SeqAlignInsert(SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr head, Boolean merge, Boolean add_insertion) | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpstat.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from salpstat.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salpstat.c: In function ‘DenseSegStats’: salpstat.c:310:10: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 310 | if(dsp && (((mmatches || mmismatches) && bsp_1 && bsp_2)) || !(mmatches || mmismatches)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salpstat.c: In function ‘SeqAlignScoreFix’: salpstat.c:162:20: warning: ‘sp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized] 162 | sp_last->next = (ScorePtr) MemNew(sizeof(Score)); salpstat.c: In function ‘DenseSegStats’: salpstat.c:369:31: warning: ‘spp_2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 369 | res_2 = SeqPortGetResidue(spp_2); | ^~~~~~~~~~~~~~~~~~~~~~~~ salpstat.c:368:31: warning: ‘spp_1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 368 | res_1 = SeqPortGetResidue(spp_1); | ^~~~~~~~~~~~~~~~~~~~~~~~ salpstat.c: In function ‘SeqAlignWindowScoreFN’: salpstat.c:2038:45: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2038 | residue_score[pos]=score; | ~~~~~~~~~~~~~~~~~~^~~~~~ salpstat.c:2020:34: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2020 | qgaps_score[last_pos]=-(g_open+len*g_ext); | ^ salpstat.c: In function ‘SeqAlignWindowScore’: salpstat.c:2214:12: warning: ‘scoreptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2214 | return scoreptr; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpacc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salpacc.h:33, from salpacc.c:40: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salpacc.c: In function ‘SeqAlignStrand’: salpacc.c:334:20: warning: unused variable ‘this_strand’ [-Wunused-variable] 334 | Uint1Ptr this_strand=Seq_strand_unknown; | ^~~~~~~~~~~ salpacc.c: In function ‘SeqAlignStop’: salpacc.c:561:13: warning: ‘this_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 561 | if(this_stop!=-1) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salprop.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salprop.h:46, from salprop.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salprop.c: In function ‘CopySeqLocFromSeqAlign’: salprop.c:398:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 398 | else | ^~~~ salprop.c:401:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 401 | if(crp != NULL) /*for coding region features*/ | ^~ salprop.c:291:12: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable] 291 | Boolean check_gap; | ^~~~~~~~~ salprop.c: In function ‘FeatListToProp’: salprop.c:1336:20: warning: variable ‘feat_itemID’ set but not used [-Wunused-but-set-variable] 1336 | Uint4 feat_itemID; | ^~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from salprop.c:46: salprop.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from salprop.c:42: ../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable] 50 | static CharPtr GBFeat[number_GBFeat] = { | ^~~~~~ salprop.c: In function ‘ApplyNewSeqFeat’: salprop.c:620:11: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 620 | j = stop - SeqLocStop(sfp_location); | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salprop.c:514:17: note: ‘stop’ was declared here 514 | stop, | ^~~~ salprop.c:718:27: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 718 | SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight); | ~~~^~~~~~~~~~ salprop.c:674:17: note: ‘sfp’ was declared here 674 | SeqFeatPtr sfp; | ^~~ salprop.c:733:24: warning: ‘ppp.p5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 733 | if (!sfp_p5 && ppp.p5) | ~~~~~~~~^~~~~~~~~ salprop.c:679:17: note: ‘ppp.p5’ was declared here 679 | ParTials ppp; | ^~~ salprop.c:737:12: warning: ‘ppp.p3’ may be used uninitialized in this function [-Wmaybe-uninitialized] 737 | SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salprop.c:679:17: note: ‘ppp.p3’ was declared here 679 | ParTials ppp; | ^~~ salprop.c:861:40: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 861 | if ((val2=is_id_unique (entityID, SeqLocId(sfp->product)))) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salsap.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salsap.h:57, from salsap.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salsap.c: In function ‘DenseDiagToDenseSegFunc’: salsap.c:2912:30: warning: variable ‘slpstop2’ set but not used [-Wunused-but-set-variable] 2912 | slpstop1 = 0, slpstop2 = 0; | ^~~~~~~~ salsap.c:2912:16: warning: variable ‘slpstop1’ set but not used [-Wunused-but-set-variable] 2912 | slpstop1 = 0, slpstop2 = 0; | ^~~~~~~~ salsap.c:2911:31: warning: variable ‘slpstart2’ set but not used [-Wunused-but-set-variable] 2911 | Int4 slpstart1 = 0, slpstart2 = 0, | ^~~~~~~~~ salsap.c:2911:16: warning: variable ‘slpstart1’ set but not used [-Wunused-but-set-variable] 2911 | Int4 slpstart1 = 0, slpstart2 = 0, | ^~~~~~~~~ salsap.c:2909:28: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable] 2909 | Int4 start1 = 0, start2 = 0, | ^~~~~~ salsap.c:2909:16: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable] 2909 | Int4 start1 = 0, start2 = 0, | ^~~~~~ In file included from ../include/sqnutils.h:51, from salsap.c:47: salsap.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ salsap.c:3631:13: warning: ‘FindSeqAlignCallback’ defined but not used [-Wunused-function] 3631 | static void FindSeqAlignCallback (SeqEntryPtr sep, Pointer mydata, | ^~~~~~~~~~~~~~~~~~~~ salsap.c:2157:16: warning: ‘AreDenseSegSegmentsValid’ defined but not used [-Wunused-function] 2157 | static Boolean AreDenseSegSegmentsValid (DenseSegPtr dsp, Int4 start, Int4 num) | ^~~~~~~~~~~~~~~~~~~~~~~~ salsap.c: In function ‘SeqAlignEndExtend’: salsap.c:986:18: warning: ‘n_strands’ may be used uninitialized in this function [-Wmaybe-uninitialized] 986 | Uint1Ptr n_strands; | ^~~~~~~~~ salsap.c: In function ‘CleanStrandsSeqAlign’: salsap.c:1662:29: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1662 | for (j=0; j < numseg*dim && strandp!=NULL; j++, strandp++) | ~~~~~~^~~~ salsap.c:1613:15: warning: ‘numseg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1613 | Int4 numseg; | ^~~~~~ salsap.c:1611:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1611 | Int4Ptr startp; | ^~~~~~ salsap.c:1610:15: warning: ‘lenp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1610 | Int4Ptr lenp; | ^~~~ salsap.c: In function ‘LocalAlignToSeqAnnotDimn’: salsap.c:1851:9: warning: ‘the_lens’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1851 | while ( j < lens ) | ^ salsap.c: In function ‘multseqalign_from_pairseqalign’: salsap.c:4394:19: warning: ‘strandp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4394 | strandp++; | ~~~~~~~^~ salsap.c:4245:6: warning: ‘ok’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4245 | if (!ok) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salstruc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salstruc.h:56, from salstruc.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salstruc.c: In function ‘prot_to_rputprot’: salstruc.c:734:18: warning: comparison between pointer and zero character constant [-Wpointer-compare] 734 | if (strptmp == '\0') break; | ^~ salstruc.c:734:10: note: did you mean to dereference the pointer? 734 | if (strptmp == '\0') break; | ^ salstruc.c: In function ‘data_collect_arrange’: salstruc.c:1338:22: warning: variable ‘maxscroll’ set but not used [-Wunused-but-set-variable] 1338 | Int4 maxscroll; | ^~~~~~~~~ salstruc.c: In function ‘ShowAlignmentText’: salstruc.c:2203:29: warning: variable ‘itemtype’ set but not used [-Wunused-but-set-variable] 2203 | Uint2 entityID, itemtype; | ^~~~~~~~ In file included from ../include/sqnutils.h:51, from salstruc.c:40: salstruc.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from salstruc.c:41: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salstruc.c: In function ‘data_collect_arrange’: salstruc.c:920:22: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 920 | bspssp = new_seledstruct (entityID, itemID, OBJ_(tdp->feattype), 0,itemID, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 | from + adp->bufferstart, to + adp->bufferstart, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 | bspsip, Seq_strand_plus, TRUE, NULL, (Pointer) tdp, 0, 1); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salstruc.c:872:19: note: ‘entityID’ was declared here 872 | Uint2 entityID; | ^~~~~~~~ salstruc.c:1093:44: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1093 | seq_info->entityID=entityID; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ salstruc.c:1005:17: note: ‘entityID’ was declared here 1005 | Uint2 entityID; | ^~~~~~~~ salstruc.c: In function ‘ShowAlignmentText’: salstruc.c:2194:19: warning: ‘bspsip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2194 | SeqIdPtr bspsip; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from salutil.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salutil.c: In function ‘ReadBufferFromSap’: salutil.c:128:24: warning: variable ‘buffstart’ set but not used [-Wunused-but-set-variable] 128 | Int4 bufflen, buffstart; | ^~~~~~~~~ salutil.c:127:15: warning: variable ‘sumstart’ set but not used [-Wunused-but-set-variable] 127 | Int4 sumstart; | ^~~~~~~~ salutil.c: In function ‘IS_protSeqLoc’: salutil.c:594:11: warning: variable ‘seq’ set but not used [-Wunused-but-set-variable] 594 | CharPtr seq; | ^~~ salutil.c: In function ‘ReplaceSeqIdWithSeqId’: salutil.c:1236:20: warning: variable ‘oldscope’ set but not used [-Wunused-but-set-variable] 1236 | SeqEntryPtr oldscope; | ^~~~~~~~ salutil.c: In function ‘del_ssp_fromid’: salutil.c:1722:24: warning: variable ‘pressp’ set but not used [-Wunused-but-set-variable] 1722 | SelEdStructPtr ssp, pressp = NULL; | ^~~~~~ salutil.c: In function ‘checkCDSselect_forprotein’: salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2510 | if (feat != NULL) | ^ salutil.c: In function ‘NoMoreSegGapForOneAlignment’: salutil.c:3647:8: warning: implicit declaration of function ‘AlnMgr2IndexSingleChildSeqAlign’ [-Wimplicit-function-declaration] 3647 | AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from salutil.c:53: salutil.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ salutil.c: In function ‘sesp_to_slp’: salutil.c:1927:18: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1927 | Int2 j,k; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udvseq.h:100, from udvseq.c:112: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ udvseq.c: In function ‘UDV_EncodeIdxFeat’: udvseq.c:448:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 448 | return *((Int4Ptr) index_g); | ~^~~~~~~~~~~~~~~~~~ udvseq.c: In function ‘UDV_BigEncodeIdxFeat’: udvseq.c:473:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 473 | return *((Uint8Ptr) index_g); | ~^~~~~~~~~~~~~~~~~~~ udvseq.c: In function ‘UDV_ParaGFTableFeatures’: udvseq.c:947:22: warning: ‘nFeatLines’ may be used uninitialized in this function [-Wmaybe-uninitialized] 947 | pgp->nFeatLines=nFeatLines/*-decal*/; | ~~~~~~~~~~~~~~~^~~~~~~~~~~ udvseq.c:966:32: warning: ‘PosFeat’ may be used uninitialized in this function [-Wmaybe-uninitialized] 966 | (Uint2) context->index,(Uint2)PosFeat-decal,(Uint2)0)); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blocks.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/blocks.h:88, from blocks.c:93: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blocks.c: In function ‘IndexBlocks’: blocks.c:928:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point] 928 | segp_align->to = segp_align->to = -1; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ blocks.c: In function ‘IndexNewBlocks’: blocks.c:1084:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point] 1084 | segp_align->to = segp_align->to = -1; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ blocks.c: In function ‘GetBlockOrientation’: blocks.c:2383:11: warning: ‘orient’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2383 | return orient; | ^~~~~~ blocks.c: In function ‘SAMergeBlocks’: blocks.c:2165:21: warning: ‘tmp2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2165 | tmp2 = tmp2->next; | ~~~~~^~~~~~~~~~~~ blocks.c:1572:28: warning: ‘tmp_head’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1572 | merged->segp_head = tmp_head; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ blocks.c:1470:27: warning: ‘tmp_curr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1470 | tmp1->prev = tmp_curr; | ~~~~~~~~~~~^~~~~~~~~~ blocks.c:1709:27: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1709 | tmp1->prev = prev; | ~~~~~~~~~~~^~~~~~ blocks.c:1670:34: warning: ‘new_sabp1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1670 | new_sabp1->segp_head = tmp_head; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ blocks.c: In function ‘SASplitBlock’: blocks.c:2796:25: warning: ‘segp2_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2796 | segp2->prev = segp2_prev; | ~~~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pgppop.c pgppop.c:58:2: warning: missing braces around initializer [-Wmissing-braces] 58 | { | ^ 59 | /* Red Grn Blue Color ColorID Old Hex New Hex */ 60 | 255, 255, 255, /* default 0 0xffffff - */ | { } 61 | 255, 00, 153, /* hotpink 1 0xff1493 0xff0099 */ | { } 62 | 255, 0, 255, /* magenta 2 0xff00ff - */ | { } 63 | 153, 51, 255, /* purple 3 0x9b30ff 0x9933ff */ | { } 64 | 0, 0, 255, /* blue 4 0x0000ff - */ | { } 65 | 00, 153, 255, /* sky 5 0x1e90ff 0x0099ff */ | { } 66 | 0, 255, 255, /* cyan 6 0x00ffff - */ | { } 67 | 0, 255, 153, /* sea 7 0x00ff8f 0x00ff99 */ | { } 68 | 0, 255, 0, /* green 8 0x00ff00 - */ | { } 69 | 255, 255, 0, /* yellow 9 0xffff00 - */ | { } 70 | 255, 204, 0, /* gold 10 0xffa500 0xffcc00 */ | { } 71 | 255, 102, 0, /* orange 11 0xff4500 0xff6600 */ | { } 72 | 255, 0, 0, /* red 12 0xff0000 - */ | { } 73 | 255, 153, 153, /* pink 13 0xff7256 0xff9999 */ | { } 74 | 255, 204, 204, /* pinktint 14 0xffaeb9 0xffcccc */ | { } 75 | 255, 255, 255, /* white 15 0xffffff -*/ | { } 76 | 0, 0, 0, /* black 16 0x000000 - */ | { } 77 | 204, 204, 255, /* bluetint 17 0xb0e2ff - 0xccccff*/ | { } 78 | 153, 255, 153, /* greentint 18 0x9aff9a - 0x99ff99 */ | { } 79 | 255, 255, 153, /* yellowtint 19 0xffec8b - 0xffff99 */ | { } 80 | 102, 102, 102, /* gray 20 0x7d7d7d 0x666666 */ | { } 81 | 153, 102, 51, /* brown 21 0x8b5742 01x996633 */ | { } 82 | 255, 0, 0, /* perm colors 22: red 0xff0000 - */ | { } 83 | 0, 255, 0, /* perm colors 23: green 0x00ff00 - */ | { } 84 | 255, 0, 255, /* perm colors 24: magenta 0xff00ff - */ | { } 85 | 00, 153, 255, /* perm colors 25: sky 0x1e90ff 0x0099ff */ | { } 86 | 153, 51, 255, /* perm colors 26: purple 0x9b30ff 0x9933ff */ | { } 87 | 0, 255, 0, /* SS colors 27: helix, green 0x00ff00 - */ | { } 88 | 255, 204, 0, /* SS colors 28: strand, gold 0xffa500 0xffcc00 */ | { } 89 | 255, 102, 0, /* SS colors 29: turn, orange 0xff4500 0xff6600 */ | { } 90 | 0, 255, 255, /* SS colors 30: coil, cyan ox00ffff - */ | { } 91 | 255, 255, 0, /* highlight colors 31: yellow 0xffff00 - */ | { } 92 | 0, 0, 0 /* background colors 32: black 0x000000 - */ | { 93 | }; | } pgppop.c: In function ‘DDV_WWW_get_CDS_minus’: pgppop.c:329:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable] 329 | Boolean bGiForProductOk=FALSE; | ^~~~~~~~~~~~~~~ pgppop.c:327:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable] 327 | numivals2=0; | ^~~~~~~~~ pgppop.c: In function ‘DDV_WWW_get_CDS_plus’: pgppop.c:451:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable] 451 | Boolean bGiForProductOk=FALSE; | ^~~~~~~~~~~~~~~ pgppop.c: In function ‘DDV_DisplayTopScale’: pgppop.c:1300:7: warning: unused variable ‘szBlank’ [-Wunused-variable] 1300 | Char szBlank[TABLE_LEFT_MARGIN+5]={""}; | ^~~~~~~ pgppop.c: In function ‘DDV_GetBLASTCompLine_1’: pgppop.c:1736:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1736 | if (matrix[s][q]>0){ | ^ pgppop.c:1736:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1736 | if (matrix[s][q]>0){ | ^ pgppop.c: In function ‘DDV_DisplayDefaultAlign’: pgppop.c:3169:13: warning: unused variable ‘sabp’ [-Wunused-variable] 3169 | SABlockPtr sabp=NULL;/*indexed SeqAlign*/ | ^~~~ pgppop.c: In function ‘DDV_ShowSeqAlign’: pgppop.c:3512:10: warning: unused variable ‘szPopSetAuth’ [-Wunused-variable] 3512 | Char szPopSetAuth[INFO_SIZE+1]={""}; | ^~~~~~~~~~~~ pgppop.c:3510:10: warning: unused variable ‘szPopSetName’ [-Wunused-variable] 3510 | Char szPopSetName[INFO_SIZE+1]={""};/*article title of the Pop-Set*/ | ^~~~~~~~~~~~ pgppop.c: In function ‘DDV_PrintPopSetSummary’: pgppop.c:3683:9: warning: variable ‘bPairwise’ set but not used [-Wunused-but-set-variable] 3683 | Boolean bPairwise=TRUE,bPrintTax,bPrintCom; | ^~~~~~~~~ In file included from ../include/sqnutils.h:51, from pgppop.c:49: pgppop.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/ddvcreate.h:143, from pgppop.c:54: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ pgppop.c:2664:13: warning: ‘DDV_PrintFastaGappedSequence’ defined but not used [-Wunused-function] 2664 | static void DDV_PrintFastaGappedSequence(CharPtr szSequence,FILE *fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pgppop.c:2617:13: warning: ‘DDV_GetGappedSequence’ defined but not used [-Wunused-function] 2617 | static void DDV_GetGappedSequence(SegmentPtr segp,CharPtr szSequence, | ^~~~~~~~~~~~~~~~~~~~~ pgppop.c:1841:13: warning: ‘DDV_HideMaskedLetters’ defined but not used [-Wunused-function] 1841 | static void DDV_HideMaskedLetters(CharPtr szSeqMaster,ParaGPtr pgp,ValNodePtr mask) | ^~~~~~~~~~~~~~~~~~~~~ pgppop.c:314:13: warning: ‘DDV_WWW_get_CDS_minus’ defined but not used [-Wunused-function] 314 | static void DDV_WWW_get_CDS_minus(SeqMgrFeatContextPtr context,Int4 start, | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from pgppop.c:51: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ pgppop.c: In function ‘DDV_GetPubValues’: pgppop.c:2873:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2873 | sprintf(szBuf,"%d",year); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from pgppop.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pgppop.c: In function ‘DDV_PopDisplay2’: pgppop.c:998:22: warning: ‘pgp2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 998 | pgp2->StopLetter=pgp2->StartLetter+AbsLengthAli-1; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pgppop.c:1004:14: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1004 | vnp->next=NULL; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF samutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/samutil.h:230, from samutil.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ samutil.c: In function ‘SAM_AlignIdComp’: samutil.c:796:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 796 | if ((a == NULL) || (b == NULL)) | ^~ samutil.c:799:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 799 | choice = a->choice; | ^~~~~~ samutil.c: In function ‘SAM_AlignIdDup’: samutil.c:852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 852 | if (oldid == NULL) | ^~ samutil.c:855:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 855 | newid = ValNodeNew(NULL); | ^~~~~ samutil.c: In function ‘DDE_FreeStack’: samutil.c:1556:11: warning: operation on ‘Index’ may be undefined [-Wsequence-point] 1556 | Index = ++Index % DDE_STACK_SIZE; samutil.c: In function ‘DDE_Add’: samutil.c:1611:22: warning: operation on ‘pStack->StackMin’ may be undefined [-Wsequence-point] 1611 | pStack->StackMin = ++pStack->StackMin % DDE_STACK_SIZE; samutil.c:1622:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point] 1622 | pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE; samutil.c: In function ‘DDE_Prev’: samutil.c:1686:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point] 1686 | pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE; samutil.c: In function ‘DDE_Next’: samutil.c:1717:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point] 1717 | pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE; samutil.c: In function ‘DDE_ShowRow’: samutil.c:1984:26: warning: variable ‘NumRows’ set but not used [-Wunused-but-set-variable] 1984 | Int4 i, NumRows, HiRow, LowRow, tmp1, tmp2; | ^~~~~~~ samutil.c: In function ‘DDE_AddGapToEndOfAllRows’: samutil.c:3106:41: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 3106 | ValNodePtr ptxtList, last_vnp, vnp; | ^~~ samutil.c: In function ‘DDE_RightAddNode’: samutil.c:3707:33: warning: variable ‘new_vnp’ set but not used [-Wunused-but-set-variable] 3707 | ValNodePtr vnp, next_vnp, new_vnp; | ^~~~~~~ samutil.c: In function ‘DDE_LeftMergeAndAddNodeList’: samutil.c:3757:24: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable] 3757 | Boolean RetVal1, RetVal2, IsLeftAlignedGap, NodeDeleted; | ^~~~~~~ samutil.c: In function ‘DDE_RightMergeAndAddNodeList’: samutil.c:3813:38: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable] 3813 | Boolean RetVal=FALSE, RetVal1, RetVal2, HeadChanged; | ^~~~~~~ samutil.c: In function ‘DDE_ShiftRightBoundaryLeft1’: samutil.c:4592:41: warning: variable ‘Index’ set but not used [-Wunused-but-set-variable] 4592 | Int4 NumBlocks, i, NumRows, Index, BlockCount=0; | ^~~~~ samutil.c: In function ‘DDE_CreateArraysForDenseSeg’: samutil.c:5028:22: warning: variable ‘NumSegs’ set but not used [-Wunused-but-set-variable] 5028 | Int4 NumRows, NumSegs, i, StartIndex, StopIndex, ArrayIndex=0; | ^~~~~~~ samutil.c: In function ‘DDE_AddAGap’: samutil.c:2676:22: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2676 | else if ((ptxtList == tail) && (!Before)) { | ~~~~~~~~~~^~~~~~~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objall.h:64, from ../include/samutil.h:231, from samutil.c:42: samutil.c: In function ‘DDE_RemoveGapFromEndOfAllRows’: ../include/ncbimem.h:232:23: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ samutil.c:3137:15: note: ‘last_vnp’ was declared here 3137 | ValNodePtr last_vnp; | ^~~~~~~~ samutil.c:3034:15: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3034 | last_msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samutil.c: In function ‘DDE_AddGapToEndOfAllRows’: samutil.c:3118:11: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3118 | vnp = DDE_AddAGap(pEditInfo, i, last_vnp, FALSE, TRUE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samutil.c: In function ‘DDE_GetLastVNP’: samutil.c:3143:9: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3143 | return(last_vnp); | ^ samutil.c: In function ‘DDE_GetNumResidues’: samutil.c:3166:13: warning: ‘to’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3166 | return((to-from) + 1); | ~~~^~~~~~ samutil.c: In function ‘DDE_ShiftLeftList’: samutil.c:3923:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3923 | msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samutil.c: In function ‘DDE_ShiftRowLeft1’: samutil.c:2325:13: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2325 | last_msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samutil.c: In function ‘DDE_RemoveGap’: samutil.c:2854:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2854 | msap = (MsaTxtDispPtr) vnp->data.ptrvalue; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samutil.c: In function ‘DDE_ShiftRowRight1’: samutil.c:2356:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2356 | msap = (MsaTxtDispPtr) DDE_GetLastVNP(ptxtList)->data.ptrvalue; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samutil.c: In function ‘DDE_LastColumnIsAligned’: samutil.c:4210:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4210 | msap = (MsaTxtDispPtr) vnp->data.ptrvalue; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samutil.c: In function ‘DDE_ShiftRightBoundaryLeft1’: samutil.c:4210:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4210 | msap = (MsaTxtDispPtr) vnp->data.ptrvalue; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samutil.c:3137:15: note: ‘last_vnp’ was declared here 3137 | ValNodePtr last_vnp; | ^~~~~~~~ samutil.c: In function ‘DDE_ShiftRightBoundaryRight1’: samutil.c:4210:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4210 | msap = (MsaTxtDispPtr) vnp->data.ptrvalue; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ samutil.c:3137:15: note: ‘last_vnp’ was declared here 3137 | ValNodePtr last_vnp; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvcolor.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvcolor.c:160: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvcolor.c: In function ‘DDV_GetColor’: ddvcolor.c:1422:10: warning: unused variable ‘retval’ [-Wunused-variable] 1422 | Int4 retval = 0; | ^~~~~~ In file included from ../include/samutil.h:234, from ddvcolor.c:165: ddvcolor.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewmgr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/viewmgr.h:111, from viewmgr.c:165: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from viewmgr.c:167: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from viewmgr.c:168: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ viewmgr.c:683:13: warning: ‘ViewMgr_Swap’ defined but not used [-Wunused-function] 683 | static void ViewMgr_Swap(SeqAlign *salp1, SeqAlign *salp2) | ^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvcreate.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ddvcreate.h:142, from ddvcreate.c:245: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvcreate.c:290:2: warning: missing braces around initializer [-Wmissing-braces] 290 | { | ^ 291 | /* Red Grn Blue Color ColorID Old Hex New Hex */ 292 | 255, 255, 255, /* default 0 0xffffff - */ | { } 293 | 255, 0, 153, /* hotpink 1 0xff1493 0xff0099 */ | { } 294 | 255, 0, 255, /* magenta 2 0xff00ff - */ | { } 295 | 153, 51, 255, /* purple 3 0x9b30ff 0x9933ff */ | { } 296 | 0, 0, 255, /* blue 4 0x0000ff - */ | { } 297 | 00, 153, 255, /* sky 5 0x1e90ff 0x0099ff */ | { } 298 | 0, 255, 255, /* cyan 6 0x00ffff - */ | { } 299 | 0, 255, 153, /* sea 7 0x00ff8f 0x00ff99 */ | { } 300 | 0, 192, 0, /* green 8 0x00ff00 - */ | { } 301 | 255, 255, 0, /* yellow 9 0xffff00 - */ | { } 302 | 255, 204, 0, /* gold 10 0xffa500 0xffcc00 */ | { } 303 | 255, 102, 0, /* orange 11 0xff4500 0xff6600 */ | { } 304 | 255, 0, 0, /* red 12 0xff0000 - */ | { } 305 | 255, 153, 153, /* pink 13 0xff7256 0xff9999 */ | { } 306 | 255, 204, 204, /* pinktint 14 0xffaeb9 0xffcccc */ | { } 307 | 255, 255, 255, /* white 15 0xffffff -*/ | { } 308 | 0, 0, 0, /* black 16 0x000000 - */ | { } 309 | 204, 204, 255, /* bluetint 17 0xb0e2ff - 0xccccff*/ | { } 310 | 153, 255, 153, /* greentint 18 0x9aff9a - 0x99ff99 */ | { } 311 | 255, 255, 153, /* yellowtint 19 0xffec8b - 0xffff99 */ | { } 312 | 102, 102, 102, /* gray 20 0x7d7d7d 0x666666 */ | { } 313 | 153, 102, 51, /* brown 21 0x8b5742 01x996633 */ | { } 314 | 255, 0, 0, /* perm colors 22: red 0xff0000 - */ | { } 315 | 0, 255, 0, /* perm colors 23: green 0x00ff00 - */ | { } 316 | 255, 0, 255, /* perm colors 24: magenta 0xff00ff - */ | { } 317 | 00, 153, 255, /* perm colors 25: sky 0x1e90ff 0x0099ff */ | { } 318 | 153, 51, 255, /* perm colors 26: purple 0x9b30ff 0x9933ff */ | { } 319 | 0, 255, 0, /* SS colors 27: helix, green 0x00ff00 - */ | { } 320 | 255, 204, 0, /* SS colors 28: strand, gold 0xffa500 0xffcc00 */ | { } 321 | 255, 102, 0, /* SS colors 29: turn, orange 0xff4500 0xff6600 */ | { } 322 | 0, 255, 255, /* SS colors 30: coil, cyan ox00ffff - */ | { } 323 | 255, 255, 0, /* highlight colors 31: yellow 0xffff00 - */ | { } 324 | 0, 0, 0 /* background colors 32: black 0x000000 - */ | { 325 | }; | } ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_1’: ddvcreate.c:493:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 493 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ^~~~ ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_2’: ddvcreate.c:529:21: warning: variable ‘more’ set but not used [-Wunused-but-set-variable] 529 | Boolean more; | ^~~~ ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_EX2’: ddvcreate.c:779:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 779 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ^~~~ ddvcreate.c:690:21: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 690 | Boolean last; | ^~~~ ddvcreate.c:686:21: warning: variable ‘PopulateTo’ set but not used [-Wunused-but-set-variable] 686 | Int4 PopulateTo; | ^~~~~~~~~~ ddvcreate.c: In function ‘DDV_DisplayNewBLAST’: ddvcreate.c:1942:16: warning: variable ‘what’ set but not used [-Wunused-but-set-variable] 1942 | Uint1 what; | ^~~~ ddvcreate.c: In function ‘UDV_BigEncodeIdxFeat4’: ddvcreate.c:2878:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2878 | return *((Uint8Ptr) index_g); | ~^~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/ddvcreate.h:143, from ddvcreate.c:245: ddvcreate.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ddvcreate.c:249: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ddvcreate.c:2362:16: warning: ‘DDV_DisplayBlastSAP’ defined but not used [-Wunused-function] 2362 | static Boolean DDV_DisplayBlastSAP(SeqAlignPtr sap, ValNodePtr mask, | ^~~~~~~~~~~~~~~~~~~ ddvcreate.c:525:16: warning: ‘DDV_CreateDisplayFromIndex_2’ defined but not used [-Wunused-function] 525 | static Boolean DDV_CreateDisplayFromIndex_2(SeqAlignPtr sap, MsaParaGPopListPtr mpplp, Int2 LineSize) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c: In function ‘UAMgrInitBitList’: ddvcreate.c:1141:11: warning: ‘stop_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1141 | ubd->from=Start; | ~~~~~~~~~^~~~~~ ddvcreate.c:1158:73: note: ‘stop_middle’ was declared here 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle; | ^~~~~~~~~~~ ddvcreate.c:1195:4: warning: ‘start_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1195 | UABitDescrInit(&uamp->ubd[0],0,start_middle-1,TRUE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c:1201:60: warning: ‘halfBspLengthSeqR’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1201 | UABitDescrInit(&uamp->ubd[1],halfBspLengthSeqL,MaxLength-halfBspLengthSeqR-1,TRUE); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ ddvcreate.c:1200:50: warning: ‘halfBspLengthSeqL’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1200 | UABitDescrInit(&uamp->ubd[0],BspStart,BspStart+halfBspLengthSeqL-1,FALSE); | ~~~~~~~~^~~~~~~~~~~~~~~~~~ ddvcreate.c: In function ‘DDV_PopulateDisplayForDisc’: ddvcreate.c:1048:16: warning: ‘vnp_para’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1048 | vnp_list[n-1]=vnp_para; | ~~~~~~~~~~~~~^~~~~~~~~ ddvcreate.c: In function ‘UABuildDescriptor2’: ddvcreate.c:1541:13: warning: ‘stopcopy’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1541 | *TotLength+=(stopcopy-startcopy);/*to be used for the display coord. system*/ | ^~ ddvcreate.c: In function ‘DDV_DumpSAPInAFile’: ddvcreate.c:1798:2: warning: ‘matrix’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1798 | DDV_AffichageParaG(mpplp,0,0,mpplp->LengthAli-1,mpplp->LengthAli,0,option, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1799 | LineSize,hFile,byteSpp,matrix,gclr,NULL); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c: In function ‘DDV_ReadSeqBin’: ddvcreate.c:2593:9: warning: ‘btr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2593 | return btr; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jsavlt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/jsavlt.h:4, from jsavlt.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF needleman.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/needleman.h:40, from needleman.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ needleman.c: In function ‘NeedlemanWunschQuadraticByLoc’: needleman.c:281:24: warning: variable ‘bestDbPos’ set but not used [-Wunused-but-set-variable] 281 | Int4 bestQueryPos, bestDbPos; /*position ending best score in | ^~~~~~~~~ needleman.c:281:10: warning: variable ‘bestQueryPos’ set but not used [-Wunused-but-set-variable] 281 | Int4 bestQueryPos, bestDbPos; /*position ending best score in | ^~~~~~~~~~~~ needleman.c: In function ‘FetchSequenceByLoc’: needleman.c:243:12: warning: ‘query’ may be used uninitialized in this function [-Wmaybe-uninitialized] 243 | return query; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF txalign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ txalign.c: In function ‘addLinkoutForDefline’: txalign.c:188:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable] 188 | Boolean hasLinkout=FALSE; | ^~~~~~~~~~ txalign.c: In function ‘addLinkoutForBioseq’: txalign.c:256:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable] 256 | Boolean hasLinkout=FALSE; | ^~~~~~~~~~ txalign.c: In function ‘DrawTextToBuffer’: txalign.c:1254:88: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 1254 | snprintf(checkboxBuf, 200, "", sip->data.intvalue, query_number_glb); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld txalign.c: In function ‘load_align_sum_for_StdSeg’: txalign.c:2230:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2230 | if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) { | ^~~ txalign.c: In function ‘ShowAlignNodeText2Ex’: txalign.c:3030:13: warning: variable ‘is_end’ set but not used [-Wunused-but-set-variable] 3030 | Boolean is_end, strip_semicolon=TRUE; | ^~~~~~ txalign.c: In function ‘Tx_PrintDefLine’: txalign.c:4079:7: warning: unused variable ‘seqid_length’ [-Wunused-variable] 4079 | Int4 seqid_length = 0, total_length = 0; | ^~~~~~~~~~~~ txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath’: txalign.c:4494:39: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 4494 | } else if (bestid != NULL && !(options & TXALIGN_NO_DUMPGNL) || (options & TXALIGN_NO_ENTREZ)) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4498:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 4498 | if (bsp = BioseqLockById(bestid)) { | ^~~ txalign.c:4200:10: warning: unused variable ‘ColumnDistance’ [-Wunused-variable] 4200 | Int2 ColumnDistance=2, extraSpace=0, extraSpace2=0, strLen=0, maxEvalWidth=5, maxNWidth=2; | ^~~~~~~~~~~~~~ txalign.c:4192:43: warning: unused variable ‘sip_list’ [-Wunused-variable] 4192 | SeqIdPtr bestid, gi_list, subject_id, sip_list=NULL, last_id; | ^~~~~~~~ txalign.c:4188:17: warning: variable ‘ptr_start’ set but not used [-Wunused-but-set-variable] 4188 | Char *ptr, *ptr_start, *eval_buff_ptr, *bit_score_buff_ptr; | ^~~~~~~~~ txalign.c: In function ‘FormatScoreFromSeqAlignEx’: txalign.c:4817:25: warning: unused variable ‘t_adj’ [-Wunused-variable] 4817 | Int4 m_adj = 0, t_adj = 0; | ^~~~~ txalign.c:4816:29: warning: unused variable ‘last_t_to’ [-Wunused-variable] 4816 | Int4 last_m_to = 0, last_t_to = 0; | ^~~~~~~~~ txalign.c: In function ‘FSFPrintOneDefline’: txalign.c:4925:14: warning: variable ‘seqid_len’ set but not used [-Wunused-but-set-variable] 4925 | Int4 gi, seqid_len = 0; | ^~~~~~~~~ txalign.c: In function ‘FormatScoreFunc’: txalign.c:5142:13: warning: variable ‘allocated’ set but not used [-Wunused-but-set-variable] 5142 | Boolean allocated, first; | ^~~~~~~~~ txalign.c: In function ‘OOFShowSingleAlignment’: txalign.c:5808:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 5808 | else if(matrix[line1[line_index]][line2[line_index]] > 0) | ~~~~~^~~~~~~~~~~~ txalign.c:5808:52: warning: array subscript has type ‘char’ [-Wchar-subscripts] 5808 | else if(matrix[line1[line_index]][line2[line_index]] > 0) | ~~~~~^~~~~~~~~~~~ txalign.c:5575:13: warning: variable ‘lines’ set but not used [-Wunused-but-set-variable] 5575 | Int4 i, lines, k, shift_info = 0; | ^~~~~ txalign.c: In function ‘OOFDisplayTraceBack1’: txalign.c:6063:33: warning: unused variable ‘st’ [-Wunused-variable] 6063 | tmp[10] = " ", *st; | ^~ txalign.c:6063:9: warning: unused variable ‘tmp’ [-Wunused-variable] 6063 | tmp[10] = " ", *st; | ^~~ txalign.c: In function ‘OOFDisplayTraceBack2’: txalign.c:6137:33: warning: unused variable ‘st’ [-Wunused-variable] 6137 | tmp[10] = " ", *st; | ^~ txalign.c: In function ‘FDGetTaxNamesFromBioseq’: txalign.c:6239:21: warning: variable ‘bdsp’ set but not used [-Wunused-but-set-variable] 6239 | BlastDefLinePtr bdsp; | ^~~~ txalign.c: At top level: txalign.c:310:19: warning: ‘ProcessTextInsertion’ declared ‘static’ but never defined [-Wunused-function] 310 | static ValNodePtr ProcessTextInsertion PROTO((AlignNodePtr anp, Int4 m_left, Int4 m_right, BioseqPtr bsp, Int4 line_len, Int1 frame)); | ^~~~~~~~~~~~~~~~~~~~ txalign.c:6137:33: warning: ‘st’ defined but not used [-Wunused-variable] 6137 | tmp[10] = " ", *st; | ^~ txalign.c:6063:9: warning: ‘tmp’ defined but not used [-Wunused-variable] 6063 | tmp[10] = " ", *st; | ^~~ txalign.c:6063:33: warning: ‘st’ defined but not used [-Wunused-variable] 6063 | tmp[10] = " ", *st; | ^~ txalign.c:2915:1: warning: ‘get_seq_id’ defined but not used [-Wunused-function] 2915 | get_seq_id(SeqAlignPtr sap, Int2 index) | ^~~~~~~~~~ txalign.c:1820:16: warning: ‘has_hit_in_region’ defined but not used [-Wunused-function] 1820 | static Boolean has_hit_in_region(Uint1Ptr all_frame) | ^~~~~~~~~~~~~~~~~ txalign.c:112:16: warning: ‘getNameInitials’ defined but not used [-Wunused-function] 112 | static CharPtr getNameInitials(CharPtr name){ | ^~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: txalign.c: In function ‘DrawTextToBuffer’: ../include/ncbistr.h:331:19: warning: ‘HTML_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ txalign.c:1094:10: note: ‘HTML_buffer’ was declared here 1094 | CharPtr HTML_buffer; | ^~~~~~~~~~~ txalign.c: In function ‘OOFShowSingleAlignment.constprop’: txalign.c:73:17: warning: ‘pro_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 73 | #define fprintf tx_fprintf | ^~~~~~~~~~ txalign.c:5571:48: note: ‘pro_line_start’ was declared here 5571 | Int4 dna_index, pro_index, dna_line_start, pro_line_start; | ^~~~~~~~~~~~~~ txalign.c:73:17: warning: ‘dna_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 73 | #define fprintf tx_fprintf | ^~~~~~~~~~ txalign.c:5571:32: note: ‘dna_line_start’ was declared here 5571 | Int4 dna_index, pro_index, dna_line_start, pro_line_start; | ^~~~~~~~~~~~~~ txalign.c: In function ‘find_score_in_align’: txalign.c:2080:35: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2080 | stdaa_res = SeqMapTableConvert(smtp, t_res); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:1980:20: note: ‘smtp’ was declared here 1980 | SeqMapTablePtr smtp; | ^~~~ txalign.c:1945:13: warning: ‘t_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1945 | SeqPortFree(t_spp); | ^~~~~~~~~~~~~~~~~~ txalign.c:1876:23: note: ‘t_spp’ was declared here 1876 | SeqPortPtr m_spp, t_spp; | ^~~~~ txalign.c:1942:11: warning: ‘m_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1942 | if(m_spp == NULL) | ^ txalign.c:1876:16: note: ‘m_spp’ was declared here 1876 | SeqPortPtr m_spp, t_spp; | ^~~~~ txalign.c: In function ‘ShowAlignNodeText2Ex.constprop’: txalign.c:1753:28: warning: ‘m_len’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1753 | n = MAX(0, (master_len-1 - m_stop)/3 -1); | ^ txalign.c:3025:10: note: ‘m_len’ was declared here 3025 | Int4 m_len; /*length of the master sequence*/ | ^~~~~ txalign.c: In function ‘ShowTextAlignFromAnnot3’: txalign.c:949:12: warning: ‘retval’ may be used uninitialized in this function [-Wmaybe-uninitialized] 949 | return retval; | ^~~~~~ txalign.c: In function ‘FormatScoreFunc’: txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=] 4747 | sprintf(buffer, "%d", frame); | ^~ txalign.c:4747:20: note: directive argument in the range [-32768, 32767] 4747 | sprintf(buffer, "%d", frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=] 4743 | sprintf(buffer, "+%d", frame); | ^~ txalign.c:4743:20: note: directive argument in the range [-32768, 32767] 4743 | sprintf(buffer, "+%d", frame); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=] 4747 | sprintf(buffer, "%d", frame); | ^~ txalign.c:4747:20: note: directive argument in the range [-32768, 32767] 4747 | sprintf(buffer, "%d", frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=] 4743 | sprintf(buffer, "+%d", frame); | ^~ txalign.c:4743:20: note: directive argument in the range [-32768, 32767] 4743 | sprintf(buffer, "+%d", frame); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=] 4747 | sprintf(buffer, "%d", frame); | ^~ txalign.c:4747:20: note: directive argument in the range [-32768, 32767] 4747 | sprintf(buffer, "%d", frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=] 4743 | sprintf(buffer, "+%d", frame); | ^~ txalign.c:4743:20: note: directive argument in the range [-32768, 32767] 4743 | sprintf(buffer, "+%d", frame); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=] 4747 | sprintf(buffer, "%d", frame); | ^~ txalign.c:4747:20: note: directive argument in the range [-32768, 32767] 4747 | sprintf(buffer, "%d", frame); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=] 4743 | sprintf(buffer, "+%d", frame); | ^~ txalign.c:4743:20: note: directive argument in the range [-32768, 32767] 4743 | sprintf(buffer, "+%d", frame); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath.part.0’: txalign.c:4647:50: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=] 4647 | sprintf(buffer1, "%s", id_buffer, bit_score_buff_ptr); | ^~ ~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 2074 bytes into a destination of size 2049 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4645:51: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2037 [-Wformat-overflow=] 4645 | sprintf(buffer1, " %s", id_buffer, bit_score_buff_ptr); | ^~ ~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 18 and 2074 bytes into a destination of size 2049 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fdlobj.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from fdlobj.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ fdlobj.c: In function ‘BlastDefLineSetAsnRead’: fdlobj.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 69 | AsnReadFunc func; | ^~~~ fdlobj.c: In function ‘BlastDefLineAsnRead’: fdlobj.c:202:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 202 | AsnReadFunc func; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignmgr2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/alignmgr2.h:110, from alignmgr2.c:242: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ alignmgr2.c: In function ‘AlnMgr2IndexSingleDenseSegSA’: alignmgr2.c:885:13: warning: statement with no effect [-Wunused-value] 885 | for (j; jnumseg && next == -1; j++) | ^~~ alignmgr2.c: In function ‘AlnMgr2CopySeg’: alignmgr2.c:2984:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2984 | if (ldelta = ABS(s->beg - beg)) { | ^~~~~~ alignmgr2.c: In function ‘AlnMgr2AddInNewPairwiseSA’: alignmgr2.c:3221:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3221 | while (a = AlnMgr2GetNextSeqPiece(a)) { | ^ alignmgr2.c:3223:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3223 | while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) { | ^ alignmgr2.c:3233:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3233 | while (A = AlnMgr2GetNextSeqPiece(A)) { | ^ alignmgr2.c:3237:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3237 | while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {}; | ^ alignmgr2.c: In function ‘AlnMgr2SetUnaln’: alignmgr2.c:5410:22: warning: variable ‘dsp’ set but not used [-Wunused-but-set-variable] 5410 | DenseSegPtr dsp; | ^~~ alignmgr2.c: In function ‘AlnMgr2PrintSeqAlign’: alignmgr2.c:5623:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 5623 | while (more = AlnMgr2GetNextAlnBit(sap, amp)) | ^~~~ alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’: alignmgr2.c:5719:21: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 5719 | Boolean found; | ^~~~~ alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’: alignmgr2.c:6085:22: warning: variable ‘saip’ set but not used [-Wunused-but-set-variable] 6085 | SAIndex2Ptr saip; | ^~~~ alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’: alignmgr2.c:6331:7: warning: statement with no effect [-Wunused-value] 6331 | for (i; isegnum; i++) | ^~~ alignmgr2.c: In function ‘AlnMgr2GetAlnLength’: alignmgr2.c:6774:20: warning: comparison between pointer and zero character constant [-Wpointer-compare] 6774 | if (saip->unaln == FALSE || fill_in == FALSE) | ^~ alignmgr2.c:6774:8: note: did you mean to dereference the pointer? 6774 | if (saip->unaln == FALSE || fill_in == FALSE) | ^ alignmgr2.c: In function ‘AlnMgr2ComputeScoreForSeqAlign’: alignmgr2.c:8341:17: warning: variable ‘numseqs’ set but not used [-Wunused-but-set-variable] 8341 | Int4 numseqs; | ^~~~~~~ alignmgr2.c:8339:17: warning: variable ‘mismatch’ set but not used [-Wunused-but-set-variable] 8339 | Int4 mismatch; | ^~~~~~~~ alignmgr2.c:8338:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 8338 | Int4 len; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from alignmgr2.c:242: alignmgr2.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ alignmgr2.c:3557:13: warning: ‘AlnMgr2AddInNewSA’ defined but not used [-Wunused-function] 3557 | static void AlnMgr2AddInNewSA(SeqAlignPtr parent, SeqAlignPtr sap) | ^~~~~~~~~~~~~~~~~ alignmgr2.c:2368:18: warning: ‘AlnMgr2GetEdgeList’ defined but not used [-Wunused-function] 2368 | static AMEdgePtr AlnMgr2GetEdgeList(Int4 vertexnum, AMEdgePtr edge_head, AMEdgePtr already_used) | ^~~~~~~~~~~~~~~~~~ alignmgr2.c:2140:13: warning: ‘AlnMgr2SortVerticesByNumEdges’ defined but not used [-Wunused-function] 2140 | static void AlnMgr2SortVerticesByNumEdges(AMVertexPtr PNTR vertexarray, Int4 numvertices) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:1061:13: warning: ‘AlnMgr2UnpackSeqAlignChain’ defined but not used [-Wunused-function] 1061 | static void AlnMgr2UnpackSeqAlignChain(SeqAlignPtr sap) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2IndexLite’: alignmgr2.c:1001:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1001 | sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:968:17: note: ‘sap_segs_prev’ was declared here 968 | SeqAlignPtr sap_segs_prev; | ^~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’: alignmgr2.c:6122:54: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6122 | *from = dsp->starts[dsp->dim*i+row-1]+dsp->lens[i]; | ~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetMaxUnalignedLength’: alignmgr2.c:7068:23: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7068 | for (i=0; isrdp[row]->numunaln && !found; i++) | ~~~~^~~~~~ alignmgr2.c:7077:19: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7077 | for (i=0; idim; i++) | ~~~^~~~~ alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’: alignmgr2.c:6353:16: warning: ‘iip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6353 | iip->strand = strand; | ~~~~~~~~~~~~^~~~~~~~ alignmgr2.c:6182:19: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6182 | trans = saip->srdp[saip->anchor-1]->sect; | ~~~~^~~~~~ alignmgr2.c:6337:48: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6337 | iip->starts[k] = dsp->starts[dsp->dim*i + interrupt->row-1]; | ~~~^~~~~ alignmgr2.c: In function ‘AlnMgr2GetNthSeqRangeInSA’: alignmgr2.c:6478:15: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6478 | srdp = saip->srdp[n-1]; | ~~~~^~~~~~ alignmgr2.c:6485:43: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6485 | beg = dsp->starts[srdp->sect[0]*(dsp->dim) + n-1]; | ~~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNthRowSpanInSA’: alignmgr2.c:6550:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6550 | *start = saip->aligncoords[i]; | ~~~~^~~~~~~~~~~~~ alignmgr2.c:6558:41: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6558 | *stop = saip->aligncoords[i] + dsp->lens[srdp->sect[srdp->numsect-1]] - 1; | ~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetAlnLength’: alignmgr2.c:6789:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6789 | len += AlnMgr2GetMaxUnalignedLength(salp, i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:6780:24: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6780 | lastseg = saip->srdp[saip->anchor-1]->sect[saip->srdp[saip->anchor-1]->numsect-1]; | ~~~~^~~~~~ alignmgr2.c:6788:20: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6788 | len += dsp->lens[i]; | ~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’: alignmgr2.c:6025:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6025 | if (saip->anchor <= 0) | ~~~~^~~~~~~~ alignmgr2.c:6017:29: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6017 | amp->from_row = dsp->starts[trans[stop_sect]*dsp->dim+amp->row_num-1] + endoffset; | ~~~^~~~~~~~ alignmgr2.c: In function ‘AlnMgr2IsSAPDiscAli’: alignmgr2.c:6813:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6813 | if (saip->numunaln > 0) | ~~~~^~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNumAlnBlocks’: alignmgr2.c:6836:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6836 | if (saip->numunaln >= 0) | ~~~~^~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNthBlockRange’: alignmgr2.c:6870:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6870 | *start = saip->aligncoords[saip->unaln[n-1]+1]; | ~~~~^~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNthUnalignedForNthRow’: alignmgr2.c:6911:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6911 | if (saip->numunaln == -1 || unaligned > saip->numunaln) | ~~~~^~~~~~~~~~ alignmgr2.c:6932:19: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6932 | *start = dsp->starts[(saip->srdp[row-1]->unaligned[i]+1)*dsp->dim+row-1] + dsp->lens[(saip->srdp[row-1]->unaligned[i])]; | ~~~^~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNextLengthBit’: alignmgr2.c:7019:26: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7019 | maxseg = saip->unaln[*seg]; | ~~~~^~~~~~~ alignmgr2.c:7024:26: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7024 | (*len) += dsp->lens[i]; | ~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetNumSegsInRange’: alignmgr2.c:7185:62: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7185 | start = binary_search_on_uint4_list(aligncoords, from, dsp->numseg); | ~~~^~~~~~~~ alignmgr2.c:6045:15: warning: ‘aligncoords’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6045 | if (list[mid + 1] <= pos) | ^ alignmgr2.c:7150:21: note: ‘aligncoords’ was declared here 7150 | Uint4Ptr aligncoords; | ^~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlign’: alignmgr2.c:7652:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7652 | if (saip->anchor > 0) | ~~~~^~~~~~~~ alignmgr2.c:7649:51: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7649 | offset = pos - dsp->starts[(srdp->sect[L])*(dsp->dim)+row-1]; | ~~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseq’: alignmgr2.c:7715:11: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7715 | sect = binary_search_on_uint4_list(saip->aligncoords, pos, saip->numseg); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:7730:55: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7730 | return (dsp->starts[sect*(dsp->dim)+row-1] + dsp->lens[sect] - 1 - offset); | ~~~^~~~~~ alignmgr2.c: In function ‘AlnMgr2GetSubAlign’: alignmgr2.c:7554:26: warning: ‘sap_real’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7554 | if (sap == NULL || sap->saip == NULL) | ~~~^~~~~~ alignmgr2.c:7999:21: note: ‘sap_real’ was declared here 7999 | SeqAlignPtr sap_real; | ^~~~~~~~ alignmgr2.c: In function ‘AlnMgr2FillInUnaligned’: alignmgr2.c:9869:12: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9869 | curr = curr + 1 + offset; | ~~~~~^~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlignStdSeg’: alignmgr2.c:10175:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10175 | stop1 = SeqLocStop(slp_longest); | ^~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseqStdSeg’: alignmgr2.c:10209:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10209 | stop1 = SeqLocStop(slp_longest); | ^~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function ‘AlnMgr2GetAlnLengthStdSeg’: alignmgr2.c:10236:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10236 | return (SeqLocLen(slp_longest)); | ~^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alnread.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF acerdapi.c acerdapi.c: In function ‘DoesSeqStringMatchBsp’: acerdapi.c:201:30: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable] 201 | Int4 ctr, pos = 0, i, len, seq_len; | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from acerdapi.c:40: acerdapi.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aceread.c aceread.c:3308:12: warning: ‘s_GetUngappedPosition’ defined but not used [-Wunused-function] 3308 | static int s_GetUngappedPosition (int gapped_pos, char *seq) | ^~~~~~~~~~~~~~~~~~~~~ aceread.c:276:13: warning: ‘AdjustGapInfoFor3Trim’ defined but not used [-Wunused-function] 276 | static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len) | ^~~~~~~~~~~~~~~~~~~~~ aceread.c:247:13: warning: ‘AdjustGapInfoFor5Trim’ defined but not used [-Wunused-function] 247 | static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim) | ^~~~~~~~~~~~~~~~~~~~~ aceread.c:134:12: warning: ‘s_IsGapChar’ defined but not used [-Wunused-function] 134 | static int s_IsGapChar (char ch, char *gap_chars) | ^~~~~~~~~~~ aceread.c: In function ‘s_ReadContig’: aceread.c:1477:12: warning: ‘linestring’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1477 | if (linestring != NULL) free (linestring); | ^ rm -f libncbiobj.a ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiobj.a ../lib ranlib ../lib/libncbiobj.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdentrez.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cdentrez.c:283:23: warning: ‘CdEntMlSumGet’ declared ‘static’ but never defined [-Wunused-function] 283 | static DocSumPtr NEAR CdEntMlSumGet PROTO((Int4 uid)); | ^~~~~~~~~~~~~ cdentrez.c:310:23: warning: ‘CdEntSeqSumGet’ declared ‘static’ but never defined [-Wunused-function] 310 | static DocSumPtr NEAR CdEntSeqSumGet PROTO((Int4 uid, DocType type)); | ^~~~~~~~~~~~~~ cdentrez.c:2935:23: warning: ‘MedSumAsnRead’ defined but not used [-Wunused-function] 2935 | static DocSumPtr NEAR MedSumAsnRead (AsnIoPtr aip, DocUid uid) | ^~~~~~~~~~~~~ cdentrez.c:1616:26: warning: ‘FreePostingList’ defined but not used [-Wunused-function] 1616 | static ByteStorePtr NEAR FreePostingList (ByteStorePtr lst) | ^~~~~~~~~~~~~~~ cdentrez.c:307:20: warning: ‘BIOSEQ_id_E’ defined but not used [-Wunused-variable] 307 | static AsnTypePtr BIOSEQ_id_E = NULL; | ^~~~~~~~~~~ cdentrez.c: In function ‘CdEntrezMergeTerm’: cdentrez.c:2675:17: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2675 | *totl = total; | ~~~~~~^~~~~~~ cdentrez.c:2672:17: warning: ‘special’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2672 | *spcl = special; | ~~~~~~^~~~~~~~~ cdentrez.c:2640:5: warning: ‘termpage’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2640 | cd3_CdTermScan (db, fld, termpage, (Int4)0, ScanAndFreeProc); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: In function ‘strncpy’, inlined from ‘FindTermNode’ at cdentrez.c:1813:11: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdentrez.c: In function ‘FindTermNode’: cdentrez.c:1895:24: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1895 | if (scanOk && total > 0) { | ~~~~~~~^~~~~~~~~~~~ cdentrez.c: In function ‘CdLinkUidList’: cdentrez.c:938:9: warning: ‘count’ may be used uninitialized in this function [-Wmaybe-uninitialized] 938 | return count; | ^~~~~ cdentrez.c: In function ‘CdTermListByTerm’: cdentrez.c:1036:12: warning: ‘first’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1036 | rsult = cd3_CdTermScan(type,field,first,0,TermListTermScanProc); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: cdentrez.c: In function ‘CdEntrezFindTerm’: ../include/ncbimem.h:232:23: warning: ‘ctp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ cdentrez.c:1100:12: note: ‘ctp’ was declared here 1100 | CdTermPtr ctp; | ^~~ cdentrez.c: In function ‘CdEntMedlineEntryListGet’: cdentrez.c:2720:6: warning: ‘aip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2720 | cd3_CdDocAsnClose(aip); | ^~~~~~~~~~~~~~~~~~~~~~ cdentrez.c: In function ‘CdSeqSumAsnRead’: cdentrez.c:3424:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3424 | sprintf (cds, " cds%d", (int) proteins); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdromlib.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdromlib.c:73: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdnewlib.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cdnewlib.c:600:27: warning: missing braces around initializer [-Wmissing-braces] 600 | struct CdFInfo _finfo[] = { | ^ 601 | "", 0, 0, | { } 602 | "hca", MAGIC_hca, FORMAT_hca, | { } 603 | "sum", MAGIC_sum, FORMAT_sum, | { } 604 | "lnk", MAGIC_lnk, FORMAT_lnk, | { } 605 | "ofs", MAGIC_ofs, FORMAT_ofs, | { } 606 | "oix", MAGIC_oix, FORMAT_oix, | { } 607 | "trm", MAGIC_trm, FORMAT_trm, | { } 608 | "tix", MAGIC_tix, FORMAT_tix, | { } 609 | "pst", MAGIC_pst, FORMAT_pst, | { } 610 | "inf", MAGIC_inf, FORMAT_inf | { 611 | }; | } cdnewlib.c:614:27: warning: missing braces around initializer [-Wmissing-braces] 614 | struct CdDirInfo _dir[] = { | ^ cdnewlib.c: In function ‘cd3_CdDocAsnOpen’: cdnewlib.c:1327:9: warning: unused variable ‘fdir’ [-Wunused-variable] 1327 | char *fdir = NULL; | ^~~~ cdnewlib.c: In function ‘CdDevice_Init’: cdnewlib.c:2739:6: warning: variable ‘cd_num’ set but not used [-Wunused-but-set-variable] 2739 | int cd_num; | ^~~~~~ At top level: cdnewlib.c:3605:13: warning: ‘Cache_Purge’ defined but not used [-Wunused-function] 3605 | static void Cache_Purge (Cache *cache) | ^~~~~~~~~~~ cdnewlib.c:3592:14: warning: ‘Cache_Peek’ defined but not used [-Wunused-function] 3592 | static void* Cache_Peek (Cache *cache, long id) | ^~~~~~~~~~ cdnewlib.c:3569:12: warning: ‘Cache_Touch’ defined but not used [-Wunused-function] 3569 | static int Cache_Touch (Cache *cache, long id) | ^~~~~~~~~~~ cdnewlib.c:3506:12: warning: ‘Cache_Delete’ defined but not used [-Wunused-function] 3506 | static int Cache_Delete (Cache *cache, long id) | ^~~~~~~~~~~~ cdnewlib.c:638:18: warning: ‘_div’ defined but not used [-Wunused-variable] 638 | static DivInfo * _div; | ^~~~ cdnewlib.c:582:15: warning: ‘_empty_string’ defined but not used [-Wunused-variable] 582 | static char * _empty_string = ""; | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: In function ‘strncat’, inlined from ‘CdDevice_FileBuildPath.part.0.isra’ at cdnewlib.c:2679:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-overflow=] In function ‘strncat’, inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdnewlib.c: In function ‘TrmIndex_Lookup’: cdnewlib.c:2166:12: warning: ‘d’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2166 | for ( ; d <= 0 && mid >0; --mid) | ~~^~~~ cdnewlib.c:2168:27: warning: ‘term’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2168 | if (d==0 && len == (int)strlen(term)) | ^~~~~~~~~~~~ cdnewlib.c:2166:28: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2166 | for ( ; d <= 0 && mid >0; --mid) | ^~~~~ cdnewlib.c: In function ‘UidIndex_Lookup’: cdnewlib.c:1986:20: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1986 | page_num = (uid < *p && mid >0) ? mid-1 : mid; | ^~ cdnewlib.c:1986:42: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1986 | page_num = (uid < *p && mid >0) ? mid-1 : mid; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF casn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from casn.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdconfig.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cdconfig.c:75: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/ncbi.h:58, from cdconfig.c:75: cdconfig.c: In function ‘ChangeMedia’: ../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value] 247 | #define FALSE ((Nlm_Boolean)0) | ^ ../include/ncbifile.h:144:76: note: in expansion of macro ‘FALSE’ 144 | #define EjectCd(sVolume, deviceName, rawDeviceName, mountPoint, mountCmd) FALSE | ^~~~~ cdconfig.c:941:29: note: in expansion of macro ‘EjectCd’ 941 | EjectCd(toBeEjected->entrez_info->volume_label, | ^~~~~~~ ../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value] 247 | #define FALSE ((Nlm_Boolean)0) | ^ ../include/ncbifile.h:145:76: note: in expansion of macro ‘FALSE’ 145 | #define MountCd(sVolume, deviceName, mountPoint, mountCmd) FALSE | ^~~~~ cdconfig.c:960:17: note: in expansion of macro ‘MountCd’ 960 | MountCd(newMedia->entrez_info->volume_label, cdm->device_name, | ^~~~~~~ cdconfig.c: At top level: cdconfig.c:191:17: warning: ‘UnMarkLRUineligible’ declared ‘static’ but never defined [-Wunused-function] 191 | static void UnMarkLRUineligible PROTO((void)); | ^~~~~~~~~~~~~~~~~~~ cdconfig.c: In function ‘EntrezInfoMerge’: cdconfig.c:1257:45: warning: ‘besttype’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1257 | besttype->fields[f].num_terms; | ~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/cdrom.h:9, from objentr.c:102: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objentr.c: In function ‘CdRomAsnLoad’: objentr.c:170:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 170 | if (loaded) | ^~ objentr.c:172:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 172 | loaded = TRUE; | ^~~~~~ objentr.c: In function ‘DocSumAsnRead’: objentr.c:970:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 970 | AsnReadFunc func; | ^~~~ objentr.c:969:12: warning: unused variable ‘isError’ [-Wunused-variable] 969 | Boolean isError = FALSE; | ^~~~~~~ At top level: objentr.c:806:23: warning: ‘EntrezDivInfo_Destruct’ defined but not used [-Wunused-function] 806 | static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div) | ^~~~~~~~~~~~~~~~~~~~~~ objentr.c:771:16: warning: ‘EntrezLinkInfo_AsnWrite’ defined but not used [-Wunused-function] 771 | static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type) | ^~~~~~~~~~~~~~~~~~~~~~~ objentr.c: In function ‘EntrezInfoAsnRead’: objentr.c:392:4: warning: ‘div’ may be used uninitialized in this function [-Wmaybe-uninitialized] 392 | EntrezDivInfo_AsnRead(div++,stream,atp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ objentr.c:763:17: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized] 763 | link->datasize = (int) val.intvalue; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ objentr.c:240:18: note: ‘link’ was declared here 240 | EntrezLinkInfo *link; | ^~~~ objentr.c:704:19: warning: ‘fld’ may be used uninitialized in this function [-Wmaybe-uninitialized] 704 | fld->post_type = (PostType) val.intvalue; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ objentr.c:239:19: note: ‘fld’ was declared here 239 | EntrezFieldInfo *fld; | ^~~ objentr.c:649:18: warning: ‘tinf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 649 | tinf->asntype = (char*) val.ptrvalue; | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ objentr.c:238:18: note: ‘tinf’ was declared here 238 | EntrezTypeInfo *tinf; | ^~~~ objentr.c:856:16: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 856 | div->docs[i++] = val.intvalue; | ~^~ objentr.c:824:7: note: ‘i’ was declared here 824 | int i; | ^ rm -f libncbicdr.a ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbicdr.a ../lib ranlib ../lib/libncbicdr.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibbutns.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibbutns.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibbutns.c: In function ‘Nlm_CheckCallback’: vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 354 | Nlm_ControlTool c; | ^ vibbutns.c: In function ‘Nlm_RadioCallback’: vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 373 | Nlm_ControlTool c; | ^ vibbutns.c: In function ‘Nlm_SetButtonStatus’: vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 694 | Nlm_Int2 val; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibextra.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibextra.c:87: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibextra.c: In function ‘Nlm_RGB2HSL.constprop’: vibextra.c:1219:13: warning: ‘min’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1219 | i++; if ( i > 2 ) i=0; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibfiles.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibfiles.c: In function ‘Nlm_WriteCard’: vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~ vibfiles.c:715:18: note: directive argument in the range [0, 65535] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function ‘Nlm_WriteInt’: vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 725 | sprintf (temp, "%*d", length, intval); | ^~~ vibfiles.c:725:18: note: directive argument in the range [-32768, 32767] 725 | sprintf (temp, "%*d", length, intval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function ‘Nlm_CardToStr’: vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~ vibfiles.c:715:18: note: directive argument in the range [0, 65535] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function ‘Nlm_IntToStr’: vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 725 | sprintf (temp, "%*d", length, intval); | ^~~ vibfiles.c:725:18: note: directive argument in the range [-32768, 32767] 725 | sprintf (temp, "%*d", length, intval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibforms.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibforms.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibgroup.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibgroup.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viblists.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from viblists.c:164: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ viblists.c: In function ‘Nlm_SetListPosition’: viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable] 1121 | Nlm_Boolean is_realized; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmenus.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmenus.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibmenus.c: In function ‘Nlm_IsMenuItemChecked’: vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 563 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_CheckMenuItem’: vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 591 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableMenuItem’: vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2006 | Nlm_Int2 itm; | ^~~ vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2005 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoice’: vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2072 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoiceGroup’: vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2122 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoiceItem’: vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2166 | Nlm_Int2 itm; | ^~~ vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2164 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableMenuItem’: vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2329 | Nlm_Int2 itm; | ^~~ vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2328 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableChoice’: vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2395 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableChoiceItem’: vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2489 | Nlm_Int2 itm; | ^~~ vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2487 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_RemoveSubMenu’: vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2627 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_CountMenuItems’: vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 3056 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_GetMenuItem’: vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 3239 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_GetPopListTitle’: vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 3349 | Nlm_MenU m; | ^ vibmenus.c: In function ‘Nlm_AppendItems’: vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable] 3978 | Nlm_Char accel; | ^~~~~ vibmenus.c: In function ‘Nlm_NewPopupList’: vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable] 4969 | Widget lbl; | ^~~ vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable] 4967 | Pixel color; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibprmpt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibprmpt.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibsbars.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibsbars.c:135: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibslate.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibslate.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibslate.c: In function ‘Nlm_EnableSlate’: vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 1199 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_DisableSlate’: vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 1254 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_SelectSlate’: vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=] 1515 | XtVaGetValues (h, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=] 1517 | XtVaGetValues (h, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SelectPanel’: vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=] 1544 | XtVaGetValues (h, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=] 1546 | XtVaGetValues (h, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateClick’: vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2026 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_SlateClickCallback’: vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=] 2157 | XtVaGetValues (w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=] 2159 | XtVaGetValues (w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateInputCallback’: vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=] 2313 | XtVaGetValues(w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=] 2315 | XtVaGetValues(w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateDrawCallback’: vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=] 2359 | XtVaGetValues (w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=] 2361 | XtVaGetValues (w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_ResetPanel’: vibslate.c:1390:5: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1390 | rst ((Nlm_PaneL) p); | ^~~~~~~~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_RemoveSlate’: vibslate.c:1454:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1454 | rst (p); | ^~~~~~~ vibslate.c:1450:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1450 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:1449:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c: In function ‘Nlm_ResetSlate’: vibslate.c:1354:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1354 | rst (p); | ^~~~~~~ vibslate.c:1347:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1347 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:1346:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c: In function ‘Nlm_SlateDrawCallback’: vibslate.c:2215:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.click’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.drag’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.hold’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.release’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2223:11: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2223 | drw (p); | ^~~~~~~ vibslate.c:560:18: note: ‘pdata.draw’ was declared here 560 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2216:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2216 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2202:20: note: ‘pdata.reset’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2216:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2216 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2202:20: note: ‘pdata.draw’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c: In function ‘Nlm_SlateClick’: vibslate.c:2048:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2053:12: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2053 | if (clk != NULL && Nlm_GetEnabled ((Nlm_GraphiC) p) | ^ vibslate.c:2049:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2049 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2049:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2049 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibtexts.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibtexts.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibtexts.c: In function ‘Nlm_TextCallback’: vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable] 2982 | XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data; | ^~~ vibtexts.c: In function ‘Nlm_LoseFocusCallback’: vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable] 2999 | XmAnyCallbackStruct *cbs; | ^~~ vibtexts.c: In function ‘Nlm_TabCallback’: vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable] 3109 | XKeyEvent *event; | ^~~~~ vibtexts.c: In function ‘Nlm_HiddenReturnCallback’: vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable] 3122 | XKeyEvent *event; | ^~~~~ vibtexts.c: In function ‘Nlm_HiddenActivateCallback’: vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable] 3135 | XmAnyCallbackStruct *cbs; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from vibutils.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibwndws.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibwndws.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibwndws.c: In function ‘Nlm_SetColorMap’: vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable] 1060 | int defaultdepth; | ^~~~~~~~~~~~ vibwndws.c: In function ‘Nlm_SetWindowTitle’: vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 1567 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_GetWindowTitle’: vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 1610 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_NewWindow’: vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable] 2155 | int screen_num; | ^~~~~~~~~~ vibwndws.c: In function ‘Nlm_HideWindow’: vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 2526 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowNormal’: vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 2969 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowModal’: vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 3014 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowDocument’: vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 3060 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_VibMainPrelude’: vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable] 6800 | Nlm_Int2 retval; | ^~~~~~ vibwndws.c: In function ‘Nlm_RemoveDyingWindows’: vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 6922 | Nlm_WindowTool wptr; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmain.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmain.c:40: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int] 121 | main (int argc, char *argv[]) | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbidraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ncbidraw.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbidraw.c: In function ‘Nlm_SelectFont.part.0’: ncbidraw.c:500:12: warning: ‘fdata.print’ may be used uninitialized in this function [-Wmaybe-uninitialized] 500 | *fdata = *fp; | ~~~~~~~^~~~~ ncbidraw.c:2875:17: note: ‘fdata.print’ was declared here 2875 | Nlm_FontData fdata; | ^~~~~ ncbidraw.c:2900:9: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2900 | XSetFont (Nlm_currentXDisplay, Nlm_currentXGC, fdata.handle->fid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidraw.c: In function ‘Nlm_EraseRect.part.0’: ncbidraw.c:4464:41: warning: ‘rtool.height’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4464 | rtool.width+1, rtool.height+1); | ~~~~~^~~~~~~ ncbidraw.c:4464:26: warning: ‘rtool.width’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4464 | rtool.width+1, rtool.height+1); | ~~~~~^~~~~~ ncbidraw.c:4463:49: warning: ‘rtool.y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4463 | rtool.x - Nlm_XOffset, rtool.y - Nlm_YOffset, | ~~~~~^~ ncbidraw.c:4463:26: warning: ‘rtool.x’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4463 | rtool.x - Nlm_XOffset, rtool.y - Nlm_YOffset, | ~~~~~^~ ncbidraw.c: In function ‘s_DoQuadrant’: ncbidraw.c:5618:10: warning: ‘rr.right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5618 | rx = rr.right - rr.left; | ~~^~~~~~ ncbidraw.c:5618:22: warning: ‘rr.left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5618 | rx = rr.right - rr.left; | ~~^~~~~ ncbidraw.c:5619:10: warning: ‘rr.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5619 | ry = rr.bottom - rr.top; | ~~^~~~~~~ ncbidraw.c:5619:22: warning: ‘rr.top’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5619 | ry = rr.bottom - rr.top; | ~~^~~~ ncbidraw.c: In function ‘Nlm_CleanUpDrawingTools’: ncbidraw.c:7541:5: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7541 | XFreeFont (Nlm_currentXDisplay, fdata.handle); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drawing.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from drawing.c:128: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mapping.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from mapping.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mapping.c: In function ‘Nlm_MapRectToWorldBox’: mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable] 139 | Int4 curScale; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF picture.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from picture.c:100: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewer.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from viewer.c:120: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF document.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from document.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ document.c: In function ‘Nlm_PrintDocument’: document.c:4419:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4419 | system (cmmd); | ^~~~~~~~~~~~~ document.c:4423:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4423 | system (cmmd); | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF table.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from table.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF palette.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from palette.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF diagnost.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from diagnost.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF image.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from image.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ image.c: In function ‘ShiftXMask’: image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses] 840 | if(!((mask >> hi + low) & (unsigned long)1)) break; | ~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pictur3d.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/pictur3d.h:49, from ../include/ppict3d.h:49, from pictur3d.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pictur3d.c: In function ‘Nlm_DeleteFromSeg’: pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 114 | else seg->first = b->next; | ^~~~ pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 115 | if ( seg->last == b ) seg->last = bprev; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d1.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d2.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d3.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d4.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d5.c:66: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewer3d.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmouse.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibmouse.c:67: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF netscape.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from netscape.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netscape.c: In function ‘NS_Obtain_lock’: netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable] 236 | Bool waited = False; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF imagelst.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/imagelst.h:52, from imagelst.c:61: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF treeview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/treemgr.h:67, from treeview.c:91: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF shim3d.c shim3d.c: In function ‘Nlm_AddHalfWorm3D’: shim3d.c:3470:46: warning: unused variable ‘tmp’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:40: warning: unused variable ‘pCz’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:34: warning: unused variable ‘pCy’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:28: warning: unused variable ‘pCx’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:22: warning: unused variable ‘pNz’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:16: warning: unused variable ‘pNy’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3470:10: warning: unused variable ‘pNx’ [-Wunused-variable] 3470 | *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; | ^~~ shim3d.c:3469:47: warning: unused variable ‘Cz’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:42: warning: unused variable ‘Cy’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:37: warning: unused variable ‘Cx’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:32: warning: unused variable ‘Nz’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:27: warning: unused variable ‘Ny’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3469:15: warning: unused variable ‘Nx’ [-Wunused-variable] 3469 | GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, | ^~ shim3d.c:3468:21: warning: unused variable ‘pi’ [-Wunused-variable] 3468 | cosj, sinj, pi = 3.14159265358979323846; | ^~ shim3d.c:3468:15: warning: unused variable ‘sinj’ [-Wunused-variable] 3468 | cosj, sinj, pi = 3.14159265358979323846; | ^~~~ shim3d.c:3468:9: warning: unused variable ‘cosj’ [-Wunused-variable] 3468 | cosj, sinj, pi = 3.14159265358979323846; | ^~~~ shim3d.c:3467:33: warning: unused variable ‘prevlen’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~~~~~~ shim3d.c:3467:29: warning: unused variable ‘Vz’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:25: warning: unused variable ‘Vy’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:21: warning: unused variable ‘Vx’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:17: warning: unused variable ‘Hz’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:13: warning: unused variable ‘Hy’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3467:9: warning: unused variable ‘Hx’ [-Wunused-variable] 3467 | Hx, Hy, Hz, Vx, Vy, Vz, prevlen, | ^~ shim3d.c:3466:21: warning: unused variable ‘dQtz’ [-Wunused-variable] 3466 | dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/ | ^~~~ shim3d.c:3466:15: warning: unused variable ‘dQty’ [-Wunused-variable] 3466 | dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/ | ^~~~ shim3d.c:3466:9: warning: unused variable ‘dQtx’ [-Wunused-variable] 3466 | dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/ | ^~~~ shim3d.c:3464:14: warning: unused variable ‘len’ [-Wunused-variable] 3464 | GLdouble len, R1x, R1y, R1z, R2x, R2y, R2z, MG[4][3], | ^~~ shim3d.c:3463:26: warning: unused variable ‘offset’ [-Wunused-variable] 3463 | Nlm_Int4 i, j, k, m, offset; | ^~~~~~ shim3d.c:3463:23: warning: unused variable ‘m’ [-Wunused-variable] 3463 | Nlm_Int4 i, j, k, m, offset; | ^ shim3d.c:3463:20: warning: unused variable ‘k’ [-Wunused-variable] 3463 | Nlm_Int4 i, j, k, m, offset; | ^ shim3d.c:3463:17: warning: unused variable ‘j’ [-Wunused-variable] 3463 | Nlm_Int4 i, j, k, m, offset; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF odlbox.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from odlbox.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ odlbox.c: In function ‘LB_onVScroll’: odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable] 424 | Boolean IsGoUp=FALSE; | ^~~~~~ rm -f libvibrant.a ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibrant.a ../lib ranlib ../lib/libvibrant.a mv vibbutns.o vibbutns.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibbutns.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibbutns.c: In function ‘Nlm_CheckCallback’: vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 354 | Nlm_ControlTool c; | ^ vibbutns.c: In function ‘Nlm_RadioCallback’: vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 373 | Nlm_ControlTool c; | ^ vibbutns.c: In function ‘Nlm_SetButtonStatus’: vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 694 | Nlm_Int2 val; | ^~~ mv vibbutns.o vibbutns.glo mv vibbutns.tmp vibbutns.o mv vibextra.o vibextra.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibextra.c:87: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibextra.c: In function ‘Nlm_RGB2HSL.constprop’: vibextra.c:1219:13: warning: ‘min’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1219 | i++; if ( i > 2 ) i=0; | ^ mv vibextra.o vibextra.glo mv vibextra.tmp vibextra.o mv vibfiles.o vibfiles.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibfiles.c: In function ‘Nlm_WriteCard’: vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~ vibfiles.c:715:18: note: directive argument in the range [0, 65535] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function ‘Nlm_WriteInt’: vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 725 | sprintf (temp, "%*d", length, intval); | ^~~ vibfiles.c:725:18: note: directive argument in the range [-32768, 32767] 725 | sprintf (temp, "%*d", length, intval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function ‘Nlm_CardToStr’: vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~ vibfiles.c:715:18: note: directive argument in the range [0, 65535] 715 | sprintf (temp, "%*u", length, (int)cardval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function ‘Nlm_IntToStr’: vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] 725 | sprintf (temp, "%*d", length, intval); | ^~~ vibfiles.c:725:18: note: directive argument in the range [-32768, 32767] 725 | sprintf (temp, "%*d", length, intval); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv vibfiles.o vibfiles.glo mv vibfiles.tmp vibfiles.o mv vibforms.o vibforms.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibforms.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibforms.o vibforms.glo mv vibforms.tmp vibforms.o mv vibgroup.o vibgroup.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibgroup.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibgroup.o vibgroup.glo mv vibgroup.tmp vibgroup.o mv viblists.o viblists.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from viblists.c:164: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ viblists.c: In function ‘Nlm_SetListPosition’: viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable] 1121 | Nlm_Boolean is_realized; | ^~~~~~~~~~~ mv viblists.o viblists.glo mv viblists.tmp viblists.o mv vibmenus.o vibmenus.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmenus.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibmenus.c: In function ‘Nlm_IsMenuItemChecked’: vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 563 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_CheckMenuItem’: vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 591 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableMenuItem’: vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2006 | Nlm_Int2 itm; | ^~~ vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2005 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoice’: vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2072 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoiceGroup’: vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2122 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_EnableChoiceItem’: vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2166 | Nlm_Int2 itm; | ^~~ vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2164 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableMenuItem’: vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2329 | Nlm_Int2 itm; | ^~~ vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2328 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableChoice’: vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2395 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_DisableChoiceItem’: vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable] 2489 | Nlm_Int2 itm; | ^~~ vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2487 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_RemoveSubMenu’: vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2627 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_CountMenuItems’: vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 3056 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_GetMenuItem’: vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 3239 | Nlm_MenuTool h; | ^ vibmenus.c: In function ‘Nlm_GetPopListTitle’: vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 3349 | Nlm_MenU m; | ^ vibmenus.c: In function ‘Nlm_AppendItems’: vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable] 3978 | Nlm_Char accel; | ^~~~~ vibmenus.c: In function ‘Nlm_NewPopupList’: vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable] 4969 | Widget lbl; | ^~~ vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable] 4967 | Pixel color; | ^~~~~ mv vibmenus.o vibmenus.glo mv vibmenus.tmp vibmenus.o mv vibprmpt.o vibprmpt.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibprmpt.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibprmpt.o vibprmpt.glo mv vibprmpt.tmp vibprmpt.o mv vibsbars.o vibsbars.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibsbars.c:135: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibsbars.o vibsbars.glo mv vibsbars.tmp vibsbars.o mv vibslate.o vibslate.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibslate.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibslate.c: In function ‘Nlm_EnableSlate’: vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 1199 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_DisableSlate’: vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 1254 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_SelectSlate’: vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=] 1515 | XtVaGetValues (h, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=] 1517 | XtVaGetValues (h, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SelectPanel’: vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=] 1544 | XtVaGetValues (h, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=] 1546 | XtVaGetValues (h, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateClick’: vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 2026 | Nlm_SlateTool h; | ^ vibslate.c: In function ‘Nlm_SlateClickCallback’: vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=] 2157 | XtVaGetValues (w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=] 2159 | XtVaGetValues (w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateInputCallback’: vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=] 2313 | XtVaGetValues(w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=] 2315 | XtVaGetValues(w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_SlateDrawCallback’: vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=] 2359 | XtVaGetValues (w, XmNbackground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=] 2361 | XtVaGetValues (w, XmNforeground, &color, 0); | ^~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_Set3DColorMap’: vibslate.c:2686:17: warning: unused variable ‘testvisual’ [-Wunused-variable] 2686 | Boolean testvisual; | ^~~~~~~~~~ vibslate.c:2685:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable] 2685 | int defaultdepth; | ^~~~~~~~~~~~ vibslate.c: In function ‘Nlm_ResetPanel’: vibslate.c:1390:5: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1390 | rst ((Nlm_PaneL) p); | ^~~~~~~~~~~~~~~~~~~ vibslate.c: In function ‘Nlm_RemoveSlate’: vibslate.c:1454:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1454 | rst (p); | ^~~~~~~ vibslate.c:1450:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1450 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:1449:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1449:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1449 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c: In function ‘Nlm_ResetSlate’: vibslate.c:1354:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1354 | rst (p); | ^~~~~~~ vibslate.c:1347:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1347 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:1346:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:1346:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1346 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c: In function ‘Nlm_SlateDrawCallback’: vibslate.c:2215:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.click’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.drag’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.hold’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2215:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2202:20: note: ‘pdata.release’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2223:11: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2223 | drw (p); | ^~~~~~~ vibslate.c:560:18: note: ‘pdata.draw’ was declared here 560 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2216:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2216 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2202:20: note: ‘pdata.reset’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c:2216:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2216 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2202:20: note: ‘pdata.draw’ was declared here 2202 | Nlm_PanelData pdata; | ^~~~~ vibslate.c: In function ‘Nlm_SlateClick’: vibslate.c:2048:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2048:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2048 | if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL || | ^ vibslate.c:2053:12: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2053 | if (clk != NULL && Nlm_GetEnabled ((Nlm_GraphiC) p) | ^ vibslate.c:2049:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2049 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ vibslate.c:2049:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2049 | pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) { | ^ mv vibslate.o vibslate.glo mv vibslate.tmp vibslate.o mv vibtexts.o vibtexts.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibtexts.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibtexts.c: In function ‘Nlm_TextCallback’: vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable] 2982 | XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data; | ^~~ vibtexts.c: In function ‘Nlm_LoseFocusCallback’: vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable] 2999 | XmAnyCallbackStruct *cbs; | ^~~ vibtexts.c: In function ‘Nlm_TabCallback’: vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable] 3109 | XKeyEvent *event; | ^~~~~ vibtexts.c: In function ‘Nlm_HiddenReturnCallback’: vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable] 3122 | XKeyEvent *event; | ^~~~~ vibtexts.c: In function ‘Nlm_HiddenActivateCallback’: vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable] 3135 | XmAnyCallbackStruct *cbs; | ^~~ mv vibtexts.o vibtexts.glo mv vibtexts.tmp vibtexts.o mv vibutils.o vibutils.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from vibutils.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibutils.o vibutils.glo mv vibutils.tmp vibutils.o mv vibwndws.o vibwndws.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibwndws.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibwndws.c: In function ‘Nlm_SetColorMap’: vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable] 1060 | int defaultdepth; | ^~~~~~~~~~~~ vibwndws.c: In function ‘Nlm_SetWindowTitle’: vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 1567 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_GetWindowTitle’: vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 1610 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_NewWindow’: vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable] 2155 | int screen_num; | ^~~~~~~~~~ vibwndws.c: In function ‘Nlm_HideWindow’: vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 2526 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowNormal’: vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 2969 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowModal’: vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 3014 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_ShowDocument’: vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 3060 | Nlm_WindowTool wptr; | ^~~~ vibwndws.c: In function ‘Nlm_VibMainPrelude’: vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable] 6800 | Nlm_Int2 retval; | ^~~~~~ vibwndws.c: In function ‘Nlm_RemoveDyingWindows’: vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable] 6922 | Nlm_WindowTool wptr; | ^~~~ At top level: vibwndws.c:1318:16: warning: ‘Nlm_StandardColormap’ defined but not used [-Wunused-function] 1318 | static Boolean Nlm_StandardColormap(Colormap *cMap, | ^~~~~~~~~~~~~~~~~~~~ mv vibwndws.o vibwndws.glo mv vibwndws.tmp vibwndws.o mv vibmain.o vibmain.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmain.c:40: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int] 121 | main (int argc, char *argv[]) | ^~~~ mv vibmain.o vibmain.glo mv vibmain.tmp vibmain.o mv ncbidraw.o ncbidraw.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ncbidraw.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbidraw.c: In function ‘Nlm_SelectFont.part.0’: ncbidraw.c:500:12: warning: ‘fdata.print’ may be used uninitialized in this function [-Wmaybe-uninitialized] 500 | *fdata = *fp; | ~~~~~~~^~~~~ ncbidraw.c:2875:17: note: ‘fdata.print’ was declared here 2875 | Nlm_FontData fdata; | ^~~~~ ncbidraw.c:2900:9: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2900 | XSetFont (Nlm_currentXDisplay, Nlm_currentXGC, fdata.handle->fid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidraw.c: In function ‘Nlm_EraseRect.part.0’: ncbidraw.c:4464:41: warning: ‘rtool.height’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4464 | rtool.width+1, rtool.height+1); | ~~~~~^~~~~~~ ncbidraw.c:4464:26: warning: ‘rtool.width’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4464 | rtool.width+1, rtool.height+1); | ~~~~~^~~~~~ ncbidraw.c:4463:49: warning: ‘rtool.y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4463 | rtool.x - Nlm_XOffset, rtool.y - Nlm_YOffset, | ~~~~~^~ ncbidraw.c:4463:26: warning: ‘rtool.x’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4463 | rtool.x - Nlm_XOffset, rtool.y - Nlm_YOffset, | ~~~~~^~ ncbidraw.c: In function ‘s_DoQuadrant’: ncbidraw.c:5618:10: warning: ‘rr.right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5618 | rx = rr.right - rr.left; | ~~^~~~~~ ncbidraw.c:5618:22: warning: ‘rr.left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5618 | rx = rr.right - rr.left; | ~~^~~~~ ncbidraw.c:5619:10: warning: ‘rr.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5619 | ry = rr.bottom - rr.top; | ~~^~~~~~~ ncbidraw.c:5619:22: warning: ‘rr.top’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5619 | ry = rr.bottom - rr.top; | ~~^~~~ ncbidraw.c: In function ‘Nlm_CleanUpDrawingTools’: ncbidraw.c:7541:5: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized] 7541 | XFreeFont (Nlm_currentXDisplay, fdata.handle); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv ncbidraw.o ncbidraw.glo mv ncbidraw.tmp ncbidraw.o mv drawing.o drawing.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from drawing.c:128: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv drawing.o drawing.glo mv drawing.tmp drawing.o mv mapping.o mapping.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from mapping.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mapping.c: In function ‘Nlm_MapRectToWorldBox’: mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable] 139 | Int4 curScale; | ^~~~~~~~ mv mapping.o mapping.glo mv mapping.tmp mapping.o mv picture.o picture.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from picture.c:100: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv picture.o picture.glo mv picture.tmp picture.o mv viewer.o viewer.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from viewer.c:120: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv viewer.o viewer.glo mv viewer.tmp viewer.o mv document.o document.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from document.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ document.c: In function ‘Nlm_PrintDocument’: document.c:4419:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4419 | system (cmmd); | ^~~~~~~~~~~~~ document.c:4423:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4423 | system (cmmd); | ^~~~~~~~~~~~~ mv document.o document.glo mv document.tmp document.o mv table.o table.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from table.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv table.o table.glo mv table.tmp table.o mv palette.o palette.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from palette.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv palette.o palette.glo mv palette.tmp palette.o mv diagnost.o diagnost.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from diagnost.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv diagnost.o diagnost.glo mv diagnost.tmp diagnost.o mv image.o image.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from image.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ image.c: In function ‘ShiftXMask’: image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses] 840 | if(!((mask >> hi + low) & (unsigned long)1)) break; | ~~~^~~~~ mv image.o image.glo mv image.tmp image.o mv pictur3d.o pictur3d.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/pictur3d.h:49, from ../include/ppict3d.h:49, from pictur3d.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pictur3d.c: In function ‘Nlm_DeleteFromSeg’: pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 114 | else seg->first = b->next; | ^~~~ pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 115 | if ( seg->last == b ) seg->last = bprev; | ^~ mv pictur3d.o pictur3d.glo mv pictur3d.tmp pictur3d.o mv prim3d1.o prim3d1.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d1.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d1.o prim3d1.glo mv prim3d1.tmp prim3d1.o mv prim3d2.o prim3d2.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d2.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d2.o prim3d2.glo mv prim3d2.tmp prim3d2.o mv prim3d3.o prim3d3.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d3.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d3.o prim3d3.glo mv prim3d3.tmp prim3d3.o mv prim3d4.o prim3d4.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d4.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d4.o prim3d4.glo mv prim3d4.tmp prim3d4.o mv prim3d5.o prim3d5.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d5.c:66: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv prim3d5.o prim3d5.glo mv prim3d5.tmp prim3d5.o mv viewer3d.o viewer3d.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c mv viewer3d.o viewer3d.glo mv viewer3d.tmp viewer3d.o mv vibmouse.o vibmouse.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibmouse.c:67: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv vibmouse.o vibmouse.glo mv vibmouse.tmp vibmouse.o mv netscape.o netscape.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from netscape.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netscape.c: In function ‘NS_Obtain_lock’: netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable] 236 | Bool waited = False; | ^~~~~~ mv netscape.o netscape.glo mv netscape.tmp netscape.o mv imagelst.o imagelst.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/imagelst.h:52, from imagelst.c:61: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv imagelst.o imagelst.glo mv imagelst.tmp imagelst.o mv treeview.o treeview.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/treemgr.h:67, from treeview.c:91: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv treeview.o treeview.glo mv treeview.tmp treeview.o mv shim3d.o shim3d.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c shim3d.c: In function ‘OGL_AddCylinder3D’: shim3d.c:918:14: warning: unused variable ‘iCount’ [-Wunused-variable] 918 | Nlm_Int4 iCount; | ^~~~~~ shim3d.c: In function ‘OGL_AddText3D’: shim3d.c:1210:22: warning: unused variable ‘i’ [-Wunused-variable] 1210 | Nlm_Int4 Length, i; | ^ shim3d.c: In function ‘OGL_Zoom_DragMA’: shim3d.c:1770:16: warning: unused variable ‘OGL_Data’ [-Wunused-variable] 1770 | TOGL_Data *OGL_Data = MAToOGL(ma); | ^~~~~~~~ shim3d.c: In function ‘OGL_Hit’: shim3d.c:2065:37: warning: left shift count >= width of type [-Wshift-count-overflow] 2065 | ZMinName = ZMinName << (sizeof(GLuint) * 8); | ^~ shim3d.c: In function ‘write_row_callback’: shim3d.c:2923:48: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2923 | (((float) row) / (-nRows)) * ((end - start) / 15) | ~~~~~^~~~~~~~ shim3d.c:2923:48: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from shim3d.c:331: In function ‘strncpy’, inlined from ‘Nlm_FindAvailableFonts’ at shim3d.c:2234:9: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shim3d.c: In function ‘SetOGLFont’: shim3d.c:2381:64: warning: ‘closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2381 | fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]); | ^ shim3d.c:2376:37: warning: ‘mindiff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2376 | if (ii == 0 || diff < mindiff) { | ~~~~~^~~~~~~~~ shim3d.c:2381:64: warning: ‘list’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2381 | fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]); | ^ shim3d.c: In function ‘Nlm_AddHalfWorm3D’: shim3d.c:3463:26: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3463 | Nlm_Int4 i, j, k, m, offset; | ^~~~~~ mv shim3d.o shim3d.glo mv shim3d.tmp shim3d.o mv odlbox.o odlbox.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from odlbox.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ odlbox.c: In function ‘LB_onVScroll’: odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable] 424 | Boolean IsGoUp=FALSE; | ^~~~~~ mv odlbox.o odlbox.glo mv odlbox.tmp odlbox.o rm -f libvibrantOGL.a ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibrantOGL.a ../lib ranlib ../lib/libvibrantOGL.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from accentr.c:297: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ accentr.c: In function ‘EntrezBiostrucGet’: accentr.c:2113:17: warning: unused variable ‘retval’ [-Wunused-variable] 2113 | BiostrucPtr retval = NULL; | ^~~~~~ accentr.c: In function ‘EntrezGIForSeqIdFunc’: accentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3283 | if (! gi) return OM_MSG_RET_OK; | ^~ accentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3285 | sip2 = ValNodeNew(NULL); | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from ../include/accutils.h:119, from accutils.c:149: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from ../include/accutils.h:119, from accutils.c:149: In function ‘strncpy’, inlined from ‘EntrezFieldToString’ at accutils.c:691:13: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libncbiacc.a ar cru libncbiacc.a accentr.o accutils.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiacc.a ../lib ranlib ../lib/libncbiacc.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drawseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from drawseq.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ drawseq.c: In function ‘AddFlatNodeSymbol’: drawseq.c:811:7: warning: unused variable ‘symbol_height’ [-Wunused-variable] 811 | Int4 symbol_height = 8; | ^~~~~~~~~~~~~ drawseq.c: In function ‘AddAlignBlocks’: drawseq.c:970:7: warning: variable ‘c_num’ set but not used [-Wunused-but-set-variable] 970 | Int2 c_num; | ^~~~~ drawseq.c: In function ‘AddAlignFeature’: drawseq.c:1369:8: warning: unused variable ‘ptype’ [-Wunused-variable] 1369 | Uint1 ptype = 0; | ^~~~~ drawseq.c: In function ‘AddAlignmentMismatch’: drawseq.c:1523:7: warning: variable ‘i_right’ set but not used [-Wunused-but-set-variable] 1523 | Int4 i_right; | ^~~~~~~ drawseq.c: In function ‘DrawRestrictionMap’: drawseq.c:1811:10: warning: unused variable ‘retval’ [-Wunused-variable] 1811 | Boolean retval = FALSE; | ^~~~~~ drawseq.c:1802:15: warning: variable ‘center’ set but not used [-Wunused-but-set-variable] 1802 | Int4 x1, x2, center; | ^~~~~~ drawseq.c: In function ‘DrawFeatures’: drawseq.c:2563:7: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 2563 | Int2 entityID; | ^~~~~~~~ drawseq.c: In function ‘DrawOneSeqLoc’: drawseq.c:3020:10: warning: variable ‘show_seq_label’ set but not used [-Wunused-but-set-variable] 3020 | Boolean show_seq_label = TRUE; /*show the label of a sequence*/ | ^~~~~~~~~~~~~~ drawseq.c:3009:10: warning: variable ‘ends’ set but not used [-Wunused-but-set-variable] 3009 | Boolean ends; | ^~~~ drawseq.c: In function ‘Label_GData’: drawseq.c:3439:10: warning: variable ‘success’ set but not used [-Wunused-but-set-variable] 3439 | Boolean success = FALSE; | ^~~~~~~ drawseq.c: In function ‘DrawEquivAlign’: drawseq.c:3594:8: warning: unused variable ‘my_gray_color’ [-Wunused-variable] 3594 | Uint1 my_gray_color[]={63, 63, 63}; | ^~~~~~~~~~~~~ drawseq.c: In function ‘load_align_label_rectangle’: drawseq.c:4352:10: warning: variable ‘found_it’ set but not used [-Wunused-but-set-variable] 4352 | Boolean found_it; | ^~~~~~~~ drawseq.c: In function ‘PicForAlignNode’: drawseq.c:4558:18: warning: variable ‘min_scale’ set but not used [-Wunused-but-set-variable] 4558 | Int4 max_width, min_scale; | ^~~~~~~~~ At top level: drawseq.c:3525:22: warning: ‘get_ith_arp’ defined but not used [-Wunused-function] 3525 | static AlignRangePtr get_ith_arp(AlignRangePtr arp, Int2 i) | ^~~~~~~~~~~ drawseq.c:3511:18: warning: ‘get_map_pos’ defined but not used [-Wunused-function] 3511 | static MapPosPtr get_map_pos(MapLayoutPtr mlp, SeqIdPtr sip) | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotmatrx.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dotmatrx.h:47, from dotmatrx.c:32: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fea2seg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from fea2seg.c:74: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fstyle.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from fstyle.c:55: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smdlg1.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smdlg2.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ smdlg2.c: In function ‘Nlm_CreateDlgGroup’: smdlg2.c:631:12: warning: variable ‘toAlign’ set but not used [-Wunused-but-set-variable] 631 | Handle toAlign[3]; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smdlg3.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ smdlg3.c: In function ‘FeatureExtraDraw’: smdlg3.c:508:17: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 508 | p1.y = (y0+y1)/2; p2.y = y0; | ~~~^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smtools.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smtools.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ smtools.c: In function ‘Nlm_CtreateToolsSM’: smtools.c:534:30: warning: ‘%s’ directive writing up to 227 bytes into a region of size 32 [-Wformat-overflow=] 534 | sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size ); | ^~ smtools.c:534:29: note: directive argument in the range [-32768, 32767] 534 | sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size ); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smtools.c:48: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 235 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF styleman.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from styleman.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF stylemui.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from stylemui.c:48: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF glbpic.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from glbpic.c:22: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ glbpic.c: In function ‘label_linear_mark’: glbpic.c:1295:7: warning: unused variable ‘tick_len’ [-Wunused-variable] 1295 | Int4 tick_len = TICK_LEN; | ^~~~~~~~ glbpic.c: In function ‘add_alignment_to_global’: glbpic.c:1552:8: warning: variable ‘p_val’ set but not used [-Wunused-but-set-variable] 1552 | Uint1 p_val; | ^~~~~ At top level: glbpic.c:1748:16: warning: ‘get_print_score’ defined but not used [-Wunused-function] 1748 | static Boolean get_print_score(FloatHi min_score, FloatHi max_score, CharPtr label, Uint1 status) | ^~~~~~~~~~~~~~~ glbpic.c:584:19: warning: ‘extract_align_range’ defined but not used [-Wunused-function] 584 | static ValNodePtr extract_align_range(ValNodePtr PNTR arp_list, Uint1 displayOrder) | ^~~~~~~~~~~~~~~~~~~ glbpic.c: In function ‘get_circle_label_align’: glbpic.c:2349:9: warning: ‘align’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2349 | return align; | ^~~~~ glbpic.c: In function ‘label_circle_mark.isra’: glbpic.c:2474:26: warning: ‘first_left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2474 | if(ABS(first_left - left) < (t_width +3)) | ^ glbpic.c:2473:24: warning: ‘first_top’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2473 | if(ABS(first_top - top )< (font_height+3)) | ^ glbpic.c:2417:30: warning: ‘first_align’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2417 | Uint1 label_align, p_align, first_align; | ^~~~~~~~~~~ glbpic.c:2469:28: warning: ‘first_width’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2469 | t_width = (first_width + width)/2; | ~~~~~~~~~~~~~^~~~~~~~ glbpic.c:2417:21: warning: ‘p_align’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2417 | Uint1 label_align, p_align, first_align; | ^~~~~~~ In file included from ../include/glbpic.h:7, from glbpic.c:23: glbpic.c: In function ‘add_alignment_to_global’: ../include/picture.h:520:22: warning: ‘g_top’ may be used uninitialized in this function [-Wmaybe-uninitialized] 520 | #define AddTextLabel Nlm_AddTextLabel | ^~~~~~~~~~~~~~~~ glbpic.c:1560:7: note: ‘g_top’ was declared here 1560 | Int4 g_top, g_bottom; | ^~~~~ glbpic.c: In function ‘Draw_Global’: glbpic.c:2177:12: warning: ‘seglen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2177 | m_stop += seglen; | ~~~~~~~^~~~~~~~~ glbpic.c:1943:8: note: ‘seglen’ was declared here 1943 | Int4 seglen; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF layout.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/layout.h:3, from layout.c:2: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ layout.c: In function ‘LayoutNodeFlat’: layout.c:326:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable] 326 | ValNodePtr vnp, next, prev; | ^~~~ layout.c: In function ‘layout_uncompressed_group’: layout.c:1244:20: warning: variable ‘group_stop’ set but not used [-Wunused-but-set-variable] 1244 | Int2 group_start, group_stop; | ^~~~~~~~~~ layout.c: In function ‘LayoutFeatNode’: layout.c:1365:17: warning: variable ‘y_next’ set but not used [-Wunused-but-set-variable] 1365 | Int4 cur_line, y_next; | ^~~~~~ layout.c:1364:17: warning: variable ‘labelstyle’ set but not used [-Wunused-but-set-variable] 1364 | Int4 segstyle, labelstyle; | ^~~~~~~~~~ layout.c:1363:10: warning: variable ‘show_trunc’ set but not used [-Wunused-but-set-variable] 1363 | Boolean show_trunc = FALSE; | ^~~~~~~~~~ layout.c:1350:10: warning: variable ‘k’ set but not used [-Wunused-but-set-variable] 1350 | Int2 i, k; | ^ layout.c: In function ‘LayoutAlignNode’: layout.c:2208:7: warning: unused variable ‘num’ [-Wunused-variable] 2208 | Int4 num = 0; | ^~~ At top level: layout.c:1779:16: warning: ‘modify_master_line’ defined but not used [-Wunused-function] 1779 | static Boolean modify_master_line(ValNodePtr vnp, Int4Ptr m_left, Int4Ptr m_right, Int4 maxScale, Uint1 label_align) | ^~~~~~~~~~~~~~~~~~ layout.c: In function ‘GroupFeatNode’: layout.c:636:14: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 636 | prev->next = new; | ~~~~~~~~~~~^~~~~ layout.c:594:35: note: ‘prev’ was declared here 594 | ValNodePtr my_node = NULL, curr, prev, next; | ^~~~ layout.c: In function ‘OrderCdsmRNA’: layout.c:969:14: warning: ‘m_missed’ may be used uninitialized in this function [-Wmaybe-uninitialized] 969 | else if(missed == m_missed && m_offset > offset) | ^ layout.c:940:15: note: ‘m_missed’ was declared here 940 | Int2 missed, m_missed; /*number of exons missed at both end*/ | ^~~~~~~~ layout.c: In function ‘LayoutFeatNode’: layout.c:1503:12: warning: ‘p_right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1503 | p_right = MAX(right, p_right); layout.c:1502:11: warning: ‘p_left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1502 | p_left = MIN(left, p_left); layout.c:1504:14: warning: ‘height’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1504 | maxHeight = MAX(height, maxHeight); layout.c: In function ‘LayoutAlignNode’: layout.c:2215:17: warning: ‘next_line’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2215 | Int4 cur_line, next_line; | ^~~~~~~~~ layout.c:2251:7: warning: ‘next’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2251 | i = find_align_line_number(anp, vnp->next, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2252 | label_align, &next, &line_status_list, m_right, maxScale); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF saldist.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/saldist.h:48, from saldist.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ saldist.c: In function ‘AAcode’: saldist.c:1003:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1003 | if (car=='A') return(1); if (car=='B') return(2); | ^~ saldist.c:1003:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1003 | if (car=='A') return(1); if (car=='B') return(2); | ^~ saldist.c:1004:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1004 | if (car=='C') return(3); if (car=='D') return(4); | ^~ saldist.c:1004:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1004 | if (car=='C') return(3); if (car=='D') return(4); | ^~ saldist.c:1005:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1005 | if (car=='E') return(5); if (car=='F') return(6); | ^~ saldist.c:1005:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1005 | if (car=='E') return(5); if (car=='F') return(6); | ^~ saldist.c:1006:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1006 | if (car=='G') return(7); if (car=='H') return(8); | ^~ saldist.c:1006:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1006 | if (car=='G') return(7); if (car=='H') return(8); | ^~ saldist.c:1007:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1007 | if (car=='I') return(9); if (car=='K') return(10); | ^~ saldist.c:1007:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1007 | if (car=='I') return(9); if (car=='K') return(10); | ^~ saldist.c:1008:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1008 | if (car=='L') return(11); if (car=='M') return(12); | ^~ saldist.c:1008:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1008 | if (car=='L') return(11); if (car=='M') return(12); | ^~ saldist.c:1009:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1009 | if (car=='N') return(13); if (car=='P') return(14); | ^~ saldist.c:1009:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1009 | if (car=='N') return(13); if (car=='P') return(14); | ^~ saldist.c:1010:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1010 | if (car=='Q') return(15); if (car=='R') return(16); | ^~ saldist.c:1010:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1010 | if (car=='Q') return(15); if (car=='R') return(16); | ^~ saldist.c:1011:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1011 | if (car=='S') return(17); if (car=='T') return(18); | ^~ saldist.c:1011:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1011 | if (car=='S') return(17); if (car=='T') return(18); | ^~ saldist.c:1012:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1012 | if (car=='V') return(19); if (car=='W') return(20); | ^~ saldist.c:1012:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1012 | if (car=='V') return(19); if (car=='W') return(20); | ^~ saldist.c:1013:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1013 | if (car=='X') return(21); if (car=='Y') return(22); | ^~ saldist.c:1013:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1013 | if (car=='X') return(21); if (car=='Y') return(22); | ^~ saldist.c:1014:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1014 | if (car=='Z') return(23); if (car=='U') return(24); | ^~ saldist.c:1014:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1014 | if (car=='Z') return(23); if (car=='U') return(24); | ^~ saldist.c: In function ‘copy_string’: saldist.c:1289:12: warning: value computed is not used [-Wunused-value] 1289 | *from++; | ^~~~~~~ saldist.c:1302:11: warning: value computed is not used [-Wunused-value] 1302 | *from++; | ^~~~~~~ saldist.c: In function ‘nss_ref_complength’: saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1479 | if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-') | ^ saldist.c:1455:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable] 1455 | c1, c2; | ^~ saldist.c:1455:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable] 1455 | c1, c2; | ^~ saldist.c: In function ‘nss_pw_complength’: saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1572 | if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-') | ^ saldist.c:1547:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable] 1547 | c1, c2; | ^~ saldist.c:1547:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable] 1547 | c1, c2; | ^~ saldist.c: In function ‘nss_gp_complength’: saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1675 | if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-') | ^ saldist.c:1640:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable] 1640 | c1, c2; | ^~ saldist.c:1640:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable] 1640 | c1, c2; | ^~ saldist.c: In function ‘SortbySimProc’: saldist.c:2139:31: warning: variable ‘newsalpd’ set but not used [-Wunused-but-set-variable] 2139 | SeqAlignPtr newsalp, newsalpd; | ^~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from saldist.c:49: saldist.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ saldist.c:1853:22: warning: ‘scangp_calcul’ defined but not used [-Wunused-function] 1853 | static Int4Ptr PNTR scangp_calcul (EditAlignDataPtr adp, Int2 seq1, Int2 seq2, Int4 from, Int4 to, Int2 group, Int2 choice, Int2 win_width) | ^~~~~~~~~~~~~ saldist.c:1080:24: warning: ‘FloatLomatrix’ defined but not used [-Wunused-function] 1080 | static FloatLoPtr PNTR FloatLomatrix (Int2 nrows, Int2 ncol) | ^~~~~~~~~~~~~ saldist.c:999:13: warning: ‘AAcode’ defined but not used [-Wunused-function] 999 | static Int2 AAcode(Char car) | ^~~~~~ saldist.c:928:16: warning: ‘new_matrice’ defined but not used [-Wunused-function] 928 | static Boolean new_matrice (Int2 simmatrix, CharPtr path) | ^~~~~~~~~~~ saldist.c:910:14: warning: ‘matrixlst’ defined but not used [-Wunused-variable] 910 | static Char *matrixlst [] = {"", "idmat", | ^~~~~~~~~ saldist.c: In function ‘writematrixhalf.constprop’: saldist.c:1225:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1225 | vnp=vnp->next; | ~~~^~~~~~~~~~ saldist.c: In function ‘PwDistProc’: saldist.c:1151:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1151 | vnp=vnp->next; | ~~~^~~~~~~~~~ saldist.c:1104:19: note: ‘vnp’ was declared here 1104 | ValNodePtr vnp, | ^~~ saldist.c: In function ‘SortbyLenItem’: saldist.c:2192:11: warning: ‘mink’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2192 | lens [mink] = maxlens + 10; | ^ saldist.c:2172:28: note: ‘mink’ was declared here 2172 | Int2 j, k, mink; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF saled.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/saledit.h:48, from saled.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ saled.c: In function ‘ReadAlignmentForSeqEntry’: saled.c:3310:21: warning: unused variable ‘dirty’ [-Wunused-variable] 3310 | dirty = FALSE; | ^~~~~ saled.c:3306:21: warning: unused variable ‘salp’ [-Wunused-variable] 3306 | SeqAlignPtr salp=NULL, | ^~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from saled.c:49: saled.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from saled.c:55: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salfiles.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/saledit.h:48, from ../include/salfiles.h:48, from salfiles.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salfiles.c: In function ‘NewFastaRead’: salfiles.c:315:30: warning: variable ‘lastsegsip’ set but not used [-Wunused-but-set-variable] 315 | SeqIdPtr segsip=NULL, lastsegsip=NULL; | ^~~~~~~~~~ salfiles.c: In function ‘ReadAlignmentToStrings’: salfiles.c:664:16: warning: unused variable ‘nseq’ [-Wunused-variable] 664 | Int2 nseq = 0; | ^~~~ salfiles.c: In function ‘MacawRead’: salfiles.c:1257:15: warning: unused variable ‘vnp’ [-Wunused-variable] 1257 | vnp = NULL; | ^~~ salfiles.c: In function ‘ReadLocalAlign’: salfiles.c:1444:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1444 | while (tmp!='\0' && !isdigit (*tmp)) | ^~ salfiles.c:1444:22: note: did you mean to dereference the pointer? 1444 | while (tmp!='\0' && !isdigit (*tmp)) | ^ salfiles.c:1446:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1446 | if (tmp!='\0') | ^~ salfiles.c:1446:19: note: did you mean to dereference the pointer? 1446 | if (tmp!='\0') | ^ salfiles.c:1455:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1455 | while (tmp!='\0' && !isdigit (*tmp)) | ^~ salfiles.c:1455:22: note: did you mean to dereference the pointer? 1455 | while (tmp!='\0' && !isdigit (*tmp)) | ^ salfiles.c:1457:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1457 | if (tmp!='\0') | ^~ salfiles.c:1457:19: note: did you mean to dereference the pointer? 1457 | if (tmp!='\0') | ^ salfiles.c:1536:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1536 | while (tmp!='\0' && !isdigit (*tmp)) | ^~ salfiles.c:1536:22: note: did you mean to dereference the pointer? 1536 | while (tmp!='\0' && !isdigit (*tmp)) | ^ salfiles.c:1538:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1538 | if (tmp!='\0') | ^~ salfiles.c:1538:19: note: did you mean to dereference the pointer? 1538 | if (tmp!='\0') | ^ salfiles.c:1547:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1547 | while (tmp!='\0' && !isdigit (*tmp)) | ^~ salfiles.c:1547:22: note: did you mean to dereference the pointer? 1547 | while (tmp!='\0' && !isdigit (*tmp)) | ^ salfiles.c:1549:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] 1549 | if (tmp!='\0') | ^~ salfiles.c:1549:19: note: did you mean to dereference the pointer? 1549 | if (tmp!='\0') | ^ salfiles.c:1370:14: warning: variable ‘tmp1’ set but not used [-Wunused-but-set-variable] 1370 | tmp1; | ^~~~ salfiles.c: In function ‘ImportFromFile’: salfiles.c:2072:20: warning: unused variable ‘sep’ [-Wunused-variable] 2072 | SeqEntryPtr sep = NULL; | ^~~ salfiles.c:2071:20: warning: unused variable ‘sap’ [-Wunused-variable] 2071 | SeqAnnotPtr sap = NULL; | ^~~ salfiles.c: In function ‘FindSeqEntryForSeqIdCallback’: salfiles.c:2672:12: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2672 | if (SeqIdForSameBioseq(cip->sip, sip)) | ^~ salfiles.c:2674:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2674 | cip->bsp = bsp; | ^~~ salfiles.c: In function ‘sesp_to_pept’: salfiles.c:2713:18: warning: unused variable ‘bufferPtr’ [-Wunused-variable] 2713 | bufferPtr = NULL; | ^~~~~~~~~ salfiles.c: In function ‘SaveFeatProc’: salfiles.c:3387:22: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable] 3387 | Int2 handled; | ^~~~~~~ salfiles.c: In function ‘CCReadAnythingLoop’: salfiles.c:3685:16: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 3685 | Uint2 entityID; | ^~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salfiles.c:48: salfiles.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ salfiles.c:501:19: warning: ‘get_lens_fromseqalign’ defined but not used [-Wunused-function] 501 | static ValNodePtr get_lens_fromseqalign (SeqAlignPtr salp) | ^~~~~~~~~~~~~~~~~~~~~ salfiles.c: In function ‘NewFastaRead.constprop’: salfiles.c:460:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 460 | if (sip!=NULL) | ^ salfiles.c: In function ‘GapFastaRead’: salfiles.c:751:19: warning: ‘seqstr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 751 | seqstr [lgseq] = '\0'; | ^ salfiles.c:654:16: note: ‘seqstr’ was declared here 654 | seqstr; | ^~~~~~ salfiles.c:724:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 724 | if (!startp) { | ^ salfiles.c:660:16: note: ‘startp’ was declared here 660 | Boolean startp; | ^~~~~~ salfiles.c: In function ‘CCDownloadProc’: salfiles.c:2218:9: warning: ‘new_sep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2218 | vnp = SeqEntryToSeqLoc (sep, &n, adp->mol_type); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salfiles.c:2286:15: note: ‘new_sep’ was declared here 2286 | SeqEntryPtr new_sep; | ^~~~~~~ salfiles.c: In function ‘ReadLocalAlignment’: salfiles.c:1287:3: warning: ‘seqvnp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1287 | ValNodeFree (seqvnp); | ^~~~~~~~~~~~~~~~~~~~ salfiles.c:1113:19: note: ‘seqvnp’ was declared here 1113 | ValNodePtr vnp, seqvnp; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpanel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/saledit.h:48, from salpanel.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salpanel.c: In function ‘go_to_next_to_draw’: salpanel.c:331:17: warning: statement with no effect [-Wunused-value] 331 | offsettmp; | ^~~~~~~~~ salpanel.c: In function ‘next_to_draw’: salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 471 | if ( curstr != NULL ) | ^ salpanel.c: In function ‘AssociatePropagatedSubloc’: salpanel.c:3131:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 3131 | ValNodePtr vnp; | ^~~ salpanel.c: In function ‘FeaturePropagateForm’: salpanel.c:4674:15: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable] 4674 | PrompT ppt; | ^~~ salpanel.c:4669:15: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 4669 | ButtoN b; | ^ salpanel.c: In function ‘OkToContinueWithFeatureApply’: salpanel.c:6103:14: warning: unused variable ‘num_missing’ [-Wunused-variable] 6103 | Int4 num_missing = 0, seq_num, start_num; | ^~~~~~~~~~~ salpanel.c: In function ‘DoApplyFeatureToAlignment’: salpanel.c:6219:31: warning: unused variable ‘found_null’ [-Wunused-variable] 6219 | Boolean found_null = FALSE; | ^~~~~~~~~~ salpanel.c: In function ‘ApplyFeatureToAlignment’: salpanel.c:6421:31: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 6421 | ButtoN b; | ^ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salpanel.c:45: salpanel.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from salpanel.c:52: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salpanel.c:5059:13: warning: ‘BatchApplyFeatureDetailsMessage’ defined but not used [-Wunused-function] 5059 | static void BatchApplyFeatureDetailsMessage (DialoG d, Int2 mssg) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salpanel.c:224:13: warning: ‘get_client_rectxy’ defined but not used [-Wunused-function] 224 | static void get_client_rectxy (PaneL p, RectPtr prc, Int2 x, Int2 y) | ^~~~~~~~~~~~~~~~~ salpanel.c:113:14: warning: ‘leftOvalFillSym’ defined but not used [-Wunused-variable] 113 | static Uint1 leftOvalFillSym [] = { | ^~~~~~~~~~~~~~~ salpanel.c:110:14: warning: ‘rightOvalFillSym’ defined but not used [-Wunused-variable] 110 | static Uint1 rightOvalFillSym [] = { | ^~~~~~~~~~~~~~~~ salpanel.c:107:14: warning: ‘leftOvalSym’ defined but not used [-Wunused-variable] 107 | static Uint1 leftOvalSym [] = { | ^~~~~~~~~~~ salpanel.c:104:14: warning: ‘rightOvalSym’ defined but not used [-Wunused-variable] 104 | static Uint1 rightOvalSym [] = { | ^~~~~~~~~~~~ salpanel.c:101:14: warning: ‘downTriFillSym’ defined but not used [-Wunused-variable] 101 | static Uint1 downTriFillSym [] = { | ^~~~~~~~~~~~~~ salpanel.c:98:14: warning: ‘upTriFillSym’ defined but not used [-Wunused-variable] 98 | static Uint1 upTriFillSym [] = { | ^~~~~~~~~~~~ salpanel.c:89:14: warning: ‘ovalFillSym’ defined but not used [-Wunused-variable] 89 | static Uint1 ovalFillSym [] = { | ^~~~~~~~~~~ salpanel.c:86:14: warning: ‘diamondFillSym’ defined but not used [-Wunused-variable] 86 | static Uint1 diamondFillSym [] = { | ^~~~~~~~~~~~~~ salpanel.c:80:14: warning: ‘downTriSym’ defined but not used [-Wunused-variable] 80 | static Uint1 downTriSym [] = { | ^~~~~~~~~~ salpanel.c:77:14: warning: ‘upTriSym’ defined but not used [-Wunused-variable] 77 | static Uint1 upTriSym [] = { | ^~~~~~~~ salpanel.c:68:14: warning: ‘ovalSym’ defined but not used [-Wunused-variable] 68 | static Uint1 ovalSym [] = { | ^~~~~~~ salpanel.c:65:14: warning: ‘diamondSym’ defined but not used [-Wunused-variable] 65 | static Uint1 diamondSym [] = { | ^~~~~~~~~~ salpanel.c: In function ‘draw_feat.isra’: salpanel.c:1939:17: warning: ‘col1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1939 | Int4 col1; | ^~~~ salpanel.c: In function ‘on_draw’: salpanel.c:2527:23: warning: ‘draw_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2527 | draw_seq (adp, curssp, from_inseq, drw_width, ptlh, curstr, draw_diff, masterstr, TRUE, itemsubtype, FALSE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salparam.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salparam.c: In function ‘mergelst’: salparam.c:1325:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 1325 | Boolean val; | ^~~ salparam.c: In function ‘unmergelst’: salparam.c:1340:20: warning: variable ‘dbdp’ set but not used [-Wunused-but-set-variable] 1340 | DialogBoxDataPtr dbdp; | ^~~~ salparam.c: In function ‘FormulaDialog’: salparam.c:1398:36: warning: variable ‘b5’ set but not used [-Wunused-but-set-variable] 1398 | ButtoN b1, b2, b3, b4, b5; | ^~ salparam.c: In function ‘JK_NTPattern2Ex’: salparam.c:1596:19: warning: variable ‘debug_str’ set but not used [-Wunused-but-set-variable] 1596 | CharPtr debug_str; | ^~~~~~~~~ salparam.c: In function ‘DotPlotBtn’: salparam.c:1936:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 1936 | Int2 status; | ^~~~~~ salparam.c: In function ‘DotPlotDialog’: salparam.c:1973:20: warning: variable ‘bt1’ set but not used [-Wunused-but-set-variable] 1973 | ButtoN bt1, bt2; | ^~~ salparam.c: In function ‘DotPlotItem’: salparam.c:2004:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 2004 | Int2 status; | ^~~~~~ salparam.c: In function ‘SelectSeqFunc’: salparam.c:2308:20: warning: variable ‘str’ set but not used [-Wunused-but-set-variable] 2308 | CharPtr str; | ^~~ salparam.c: In function ‘HighlightSelectionFunc’: salparam.c:2344:22: warning: variable ‘wdp’ set but not used [-Wunused-but-set-variable] 2344 | SeqEditViewFormPtr wdp; | ^~~ salparam.c: In function ‘PropagateFeatureProc’: salparam.c:2623:25: warning: variable ‘iID’ set but not used [-Wunused-but-set-variable] 2623 | Uint2 eID, iID, | ^~~ salparam.c:2614:20: warning: variable ‘salp’ set but not used [-Wunused-but-set-variable] 2614 | SeqAlignPtr salp; | ^~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salparam.c:49: salparam.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from salparam.c:58: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salparam.c: In function ‘FileInProc’: salparam.c:782:10: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 782 | fscanf(fp, "%d %ld", &n, &lens); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c: In function ‘DotPlotBtn’: salparam.c:1951:13: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1951 | bsp = (BioseqPtr) sep->data.ptrvalue; | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c: In function ‘PropagateFeatDialog’: salparam.c:2964:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=] 2964 | sprintf (str2, " (%ld..%ld)", (long)start, (long)stop); | ^~~ salparam.c:2964:24: note: directive argument in the range [-2147483647, 2147483647] 2964 | sprintf (str2, " (%ld..%ld)", (long)start, (long)stop); | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 28 bytes into a destination of size 24 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c:2962:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=] 2962 | sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop); | ^~~ salparam.c:2962:24: note: directive argument in the range [-2147483647, 2147483647] 2962 | sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 21 and 41 bytes into a destination of size 24 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salsa.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from salsa.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salsa.c: In function ‘SelectSubsProc’: salsa.c:2140:23: warning: variable ‘svpp’ set but not used [-Wunused-but-set-variable] 2140 | SeqEditViewProcsPtr svpp=NULL; | ^~~~ salsa.c: In function ‘SetSeqInfo’: salsa.c:3195:17: warning: unused variable ‘vnp’ [-Wunused-variable] 3195 | ValNodePtr vnp = NULL; | ^~~ salsa.c: In function ‘SetupAlignDataSap’: salsa.c:3410:16: warning: variable ‘entityID_sap’ set but not used [-Wunused-but-set-variable] 3410 | Uint2 entityID_sap; | ^~~~~~~~~~~~ salsa.c: In function ‘get_bestpos_formerge’: salsa.c:4304:17: warning: variable ‘insert_after’ set but not used [-Wunused-but-set-variable] 4304 | insert_after=FALSE; | ^~~~~~~~~~~~ salsa.c:4303:17: warning: variable ‘insert_before’ set but not used [-Wunused-but-set-variable] 4303 | Boolean insert_before=FALSE, | ^~~~~~~~~~~~~ salsa.c: In function ‘CreateSeqAlignViewForm’: salsa.c:4689:22: warning: variable ‘mergebtn’ set but not used [-Wunused-but-set-variable] 4689 | ButtoN mergebtn; | ^~~~~~~~ salsa.c: In function ‘AlgEditFunc’: salsa.c:4976:23: warning: unused variable ‘wdp’ [-Wunused-variable] 4976 | SeqEditViewFormPtr wdp = NULL; | ^~~ salsa.c:4974:23: warning: unused variable ‘w’ [-Wunused-variable] 4974 | WindoW w = NULL; | ^ salsa.c: In function ‘OldAlignmentEditor’: salsa.c:5106:16: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable] 5106 | Int2 rval; | ^~~~ salsa.c: In function ‘LaunchAnnotAlignEditor’: salsa.c:5293:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable] 5293 | Int2 handled; | ^~~~~~~ salsa.c: In function ‘LaunchAlignEditor’: salsa.c:5310:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable] 5310 | Int2 handled; | ^~~~~~~ salsa.c: In function ‘LaunchAlignViewer’: salsa.c:5327:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable] 5327 | Int2 handled; | ^~~~~~~ salsa.c: In function ‘LaunchAlignEditorFromDesktop’: salsa.c:5342:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable] 5342 | OMProcControlPtr ompcp; | ^~~~~ salsa.c: In function ‘LaunchAlignEditorFromDesktop2’: salsa.c:5359:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable] 5359 | OMProcControlPtr ompcp; | ^~~~~ salsa.c: In function ‘InsertSeqProc’: salsa.c:5538:17: warning: variable ‘cnclbt’ set but not used [-Wunused-but-set-variable] 5538 | ButtoN insbt, cnclbt; | ^~~~~~ salsa.c:5536:10: warning: variable ‘insprt’ set but not used [-Wunused-but-set-variable] 5536 | PrompT insprt; | ^~~~~~ salsa.c: In function ‘SeqAlignBestHit’: salsa.c:5605:22: warning: variable ‘last’ set but not used [-Wunused-but-set-variable] 5605 | Int4 last; | ^~~~ salsa.c: In function ‘SeqAlignStartUpdate’: salsa.c:5791:22: warning: variable ‘k’ set but not used [-Wunused-but-set-variable] 5791 | Int2 index, k, j; | ^ salsa.c:5790:15: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 5790 | start; | ^~~~~ salsa.c:5789:15: warning: variable ‘len_sum’ set but not used [-Wunused-but-set-variable] 5789 | Int4 len_sum, | ^~~~~~~ salsa.c:5786:15: warning: variable ‘lenp’ set but not used [-Wunused-but-set-variable] 5786 | Int4Ptr lenp, | ^~~~ salsa.c:5785:15: warning: variable ‘pre’ set but not used [-Wunused-but-set-variable] 5785 | SeqIdPtr pre, sip, next; | ^~~ salsa.c: In function ‘CCNormalizeSeqAlignId’: salsa.c:6746:23: warning: unused variable ‘gi’ [-Wunused-variable] 6746 | Int4 gi = 0; | ^~ salsa.c:6745:17: warning: unused variable ‘missing_fmt’ [-Wunused-variable] 6745 | CharPtr missing_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\n"; | ^~~~~~~~~~~ salsa.c:6744:17: warning: unused variable ‘missing_cont_fmt’ [-Wunused-variable] 6744 | CharPtr missing_cont_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\nContinue anyway?\n"; | ^~~~~~~~~~~~~~~~ salsa.c: In function ‘ValidateSeqAlignandACCEx’: salsa.c:7106:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable] 7106 | MsgAnswer ans; | ^~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salsa.c:48: salsa.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from salsa.c:68: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salsa.c:87:13: warning: ‘InsertSequenceDlg’ declared ‘static’ but never defined [-Wunused-function] 87 | static void InsertSequenceDlg (ButtoN b); | ^~~~~~~~~~~~~~~~~ salsa.c:5973:13: warning: ‘SWPrintFarpointerAln’ defined but not used [-Wunused-function] 5973 | static void SWPrintFarpointerAln(SeqAlignPtr sap, FILE *fp) | ^~~~~~~~~~~~~~~~~~~~ salsa.c:2360:13: warning: ‘MakeCdRgnrProc’ defined but not used [-Wunused-function] 2360 | static void MakeCdRgnrProc (IteM i) { | ^~~~~~~~~~~~~~ salsa.c:2356:13: warning: ‘MakeCdRgnProc’ defined but not used [-Wunused-function] 2356 | static void MakeCdRgnProc (IteM i) { | ^~~~~~~~~~~~~ salsa.c:1760:13: warning: ‘AcceptCloseWindowButton’ defined but not used [-Wunused-function] 1760 | static void AcceptCloseWindowButton (ButtoN b) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from salsa.c:52: ../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable] 50 | static CharPtr GBFeat[number_GBFeat] = { | ^~~~~~ In file included from ../include/ncbi.h:65, from ../include/salsa.h:48, from salsa.c:43: salsa.c: In function ‘ExportFASTAForUnselectedUpdates’: ../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 113 | #define FileClose Nlm_FileClose | ^~~~~~~~~~~~~ salsa.c:6350:23: note: ‘fp’ was declared here 6350 | FILE *fp; | ^~ In file included from ../include/ncbi.h:65, from ../include/salsa.h:48, from salsa.c:43: salsa.c: In function ‘ExportBadAlignments’: ../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 113 | #define FileClose Nlm_FileClose | ^~~~~~~~~~~~~ salsa.c:6318:23: note: ‘fp’ was declared here 6318 | FILE *fp; | ^~ salsa.c: In function ‘SeqAlignBestHit.constprop’: salsa.c:5746:23: warning: ‘nctr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5746 | *nonly = nctr+beg+end; | ~~~~^~~~ salsa.c:5748:24: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5748 | *nonly = -(beg+end); | ~~~~^~~~~ salsa.c:5746:23: warning: ‘beg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5746 | *nonly = nctr+beg+end; | ~~~~^~~~ salsa.c: In function ‘SkipThisWindowProc’: salsa.c:4574:22: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4574 | SeqAlignPtr salp; | ^~~~ salsa.c: In function ‘DeleteProc’: salsa.c:1955:165: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1955 | if ((adp->sap1_original && (FindSeqIdinSeqAlign ((SeqAlignPtr)adp->sap1_original->data, SeqLocId(slp))) > 0) || (FindSeqIdinSeqAlign ((SeqAlignPtr)sap->data, SeqLocId(slp))) > 0) | ~~~^~~~~~ salsa.c: In function ‘BioseqEditMsgFunc’: salsa.c:912:51: warning: ‘anp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 912 | ssp = SelStructNew (anp->seq_entityID, anp->bsp_itemID, OBJ_BIOSEQ, from, to, anp->sip, Seq_strand_plus, FALSE); | ~~~^~~~~~~~~~~~ salsa.c:890:20: note: ‘anp’ was declared here 890 | AlignNodePtr anp; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqfltr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from seqfltr.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqfltr.c: In function ‘FilterSeq’: seqfltr.c:259:21: warning: ‘fptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 259 | sgp->values = (Pointer) fptr; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqgraph.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from seqgraph.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqgraph.c: In function ‘EndPointDialogToEndPointValNode’: seqgraph.c:140:10: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 140 | return (Pointer) eplist; | ^~~~~~~~~~~~~~~~ seqgraph.c: In function ‘SeqLocGraphViewProc’: seqgraph.c:1136:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1136 | while (eplist != NULL) | ^ seqgraph.c: In function ‘CutOffProc’: seqgraph.c:911:11: warning: ‘fval’ may be used uninitialized in this function [-Wmaybe-uninitialized] 911 | val = fval/2; | ~~~~^~~~~~~~ seqgraph.c:841:14: note: ‘fval’ was declared here 841 | FloatHi fval; | ^~~~ seqgraph.c:1018:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1018 | while (eplist != NULL) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqgrphx.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from seqgrphx.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqgrphx.c:301:13: warning: ‘CleanupGCFilterForm’ defined but not used [-Wunused-function] 301 | static void CleanupGCFilterForm (GraphiC g, VoidPtr data) | ^~~~~~~~~~~~~~~~~~~ seqgrphx.c:152:25: warning: ‘FilterMsgFunc’ defined but not used [-Wunused-function] 152 | static Int2 LIBCALLBACK FilterMsgFunc (OMMsgStructPtr ommsp) | ^~~~~~~~~~~~~ seqgrphx.c:28:25: warning: ‘MatrixMsgFunc’ defined but not used [-Wunused-function] 28 | static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp) | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqmtrx.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from seqmtrx.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqmtrx.c:387:20: warning: ‘MatrixSearch’ defined but not used [-Wunused-function] 387 | static SeqGraphPtr MatrixSearch (BioseqPtr bsp, Int2 matrixtype) | ^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqpcc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from seqpcc.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqpcc.c: In function ‘PCCProc’: seqpcc.c:229:14: warning: ‘pbsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 229 | if ((spp = SeqPortNew (pbsp, start, end, 0, Seq_code_iupacaa)) != NULL) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqanal.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from seqanal.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aacomp.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from aacomp.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ aacomp.c:86:20: warning: ‘AACGraph’ defined but not used [-Wunused-function] 86 | static SeqGraphPtr AACGraph (SeqPortPtr spp, Int4 start, Int4 end, Int4 window, | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqscrl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from ../include/seqscrl.h:4, from seqscrl.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valdlg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/vibforms.h:46, from valdlg.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ valdlg.c: In function ‘ClickRulesDoc’: valdlg.c:373:22: warning: unused variable ‘scroll_pos’ [-Wunused-variable] 373 | Int2 scroll_pos = 0; | ^~~~~~~~~~ valdlg.c:372:22: warning: unused variable ‘sb_vert’ [-Wunused-variable] 372 | BaR sb_vert = NULL; | ^~~~~~~ valdlg.c: In function ‘UpdateRuleList’: valdlg.c:479:26: warning: unused variable ‘last_cr’ [-Wunused-variable] 479 | CommentRulePtr new_cr, last_cr = NULL; | ^~~~~~~ valdlg.c: In function ‘SaveRuleChanges’: valdlg.c:540:23: warning: variable ‘dlg’ set but not used [-Wunused-but-set-variable] 540 | CommentSetDlgPtr dlg; | ^~~ valdlg.c: In function ‘LaunchCommentRulesEditor’: valdlg.c:553:23: warning: unused variable ‘m’ [-Wunused-variable] 553 | MenU m; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsm.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/vsmpriv.h:48, from vsm.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vsm.c: In function ‘VSMDrawAbout’: vsm.c:1436:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1436 | if (vsmp->title != NULL) | ^~ vsm.c:1438:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1438 | if (vsmp->aboutinfo != NULL) | ^~ vsm.c: In function ‘VSMAboutProc’: vsm.c:1466:8: warning: variable ‘p’ set but not used [-Wunused-but-set-variable] 1466 | PaneL p; | ^ vsm.c: In function ‘VSeqMgrCreateMainWindow’: vsm.c:1569:12: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable] 1569 | ObjMgrPtr omp; | ^~~ vsm.c: In function ‘VSeqMgrPopulateMain’: vsm.c:1710:13: warning: variable ‘atp’ set but not used [-Wunused-but-set-variable] 1710 | AsnTypePtr atp; | ^~~ vsm.c: In function ‘VSMGatherPictProc’: vsm.c:2193:15: warning: variable ‘bssp’ set but not used [-Wunused-but-set-variable] 2193 | BioseqSetPtr bssp; | ^~~~ vsm.c:2188:30: warning: variable ‘bottom’ set but not used [-Wunused-but-set-variable] 2188 | Int4 top, lineheight, left, bottom, width, maxwidth; | ^~~~~~ vsm.c: In function ‘VSMAddPictureToEntity’: vsm.c:2821:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] 2821 | Pointer ptr; | ^~~ vsm.c:2820:13: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 2820 | ValNodePtr vnp; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsmfile.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/vsmpriv.h:48, from vsmfile.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vsmfile.c: In function ‘VSMGenericBinAsnOpen’: vsmfile.c:259:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 259 | ButtoN b; | ^ vsmfile.c: In function ‘VSMGenericFastaSave’: vsmfile.c:395:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable] 395 | Uint1 code; | ^~~~ vsmfile.c: In function ‘VSMFastaProtSaveWithProduct’: vsmfile.c:527:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable] 527 | Uint1 code; | ^~~~ vsmfile.c: In function ‘VSMSaveSetsAsFiles’: vsmfile.c:1368:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable] 1368 | OMProcControlPtr ompcp; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsmutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vsmutil.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vsmutil.c: In function ‘GetDocPosForError’: vsmutil.c:1743:18: warning: variable ‘val’ set but not used [-Wunused-but-set-variable] 1743 | Int2 val; | ^~~ At top level: vsmutil.c:1628:16: warning: ‘MakeFieldReports’ defined but not used [-Wunused-function] 1628 | static Boolean MakeFieldReports (ValNodePtr report_list, ValNodePtr field_list, FILE *fp) | ^~~~~~~~~~~~~~~~ vsmutil.c:387:20: warning: ‘GetSeqDescGivenIDs’ defined but not used [-Wunused-function] 387 | static SeqDescrPtr GetSeqDescGivenIDs (Uint2 entityID, Uint4 itemID, Uint2 itemtype) | ^~~~~~~~~~~~~~~~~~ vsmutil.c: In function ‘ContinueProc’: vsmutil.c:2256:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 2256 | vep->counts [i] = 0; | ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2255:5: note: within this loop 2255 | for (i = SEV_NONE; i <= SEV_MAX; i++) { | ^~~ vsmutil.c: In function ‘RevalidateProc’: vsmutil.c:2223:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 2223 | vep->counts [i] = 0; | ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2222:5: note: within this loop 2222 | for (i = SEV_NONE; i <= SEV_MAX; i++) { | ^~~ vsmutil.c: In function ‘SetVerbosityAndRepopulate’: vsmutil.c:2297:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 2297 | vep->counts [i] = 0; | ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2296:5: note: within this loop 2296 | for (i = SEV_NONE; i <= SEV_MAX; i++) { | ^~~ vsmutil.c: In function ‘ClearValidateWindow’: vsmutil.c:613:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 613 | vep->counts [sev] = 0; | ~~~~~~~~~~~~~~~~~~^~~ vsmutil.c:612:7: note: within this loop 612 | for (sev = SEV_NONE; sev <= SEV_MAX; sev++) { | ^~~ vsmutil.c: In function ‘CreateValidateWindowExExEx’: vsmutil.c:2620:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] 2620 | vep->counts [i] = 0; | ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2619:9: note: within this loop 2619 | for (i = SEV_NONE; i <= SEV_MAX; i++) { | ^~~ vsmutil.c: In function ‘ContinueProc’: vsmutil.c:2256:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 2256 | vep->counts [i] = 0; | ~~~~~~~~~~~~^~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ vsmutil.c: In function ‘RevalidateProc’: vsmutil.c:2223:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 2223 | vep->counts [i] = 0; | ~~~~~~~~~~~~^~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ vsmutil.c: In function ‘SetVerbosityAndRepopulate’: vsmutil.c:2297:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 2297 | vep->counts [i] = 0; | ~~~~~~~~~~~~^~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ vsmutil.c: In function ‘ClearValidateWindow’: vsmutil.c:613:21: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 613 | vep->counts [sev] = 0; | ~~~~~~~~~~~~^~~~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ vsmutil.c: In function ‘CreateValidateWindowExExEx’: vsmutil.c:2620:23: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds] 2620 | vep->counts [i] = 0; | ~~~~~~~~~~~~^~~ vsmutil.c:107:18: note: while referencing ‘counts’ 107 | Int4 counts [6]; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvgraph.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvgraph.c:177: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ udvgraph.c: In function ‘UDV_click_item’: udvgraph.c:877:9: warning: unused variable ‘IsTransNeeded’ [-Wunused-variable] 877 | Boolean IsTransNeeded=FALSE; | ^~~~~~~~~~~~~ udvgraph.c: In function ‘UDV_SendBSPSelectMsg’: udvgraph.c:1230:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable] 1230 | Boolean bDeselectAll=TRUE; | ^~~~~~~~~~~~ udvgraph.c:1226:30: warning: variable ‘bsp_coord_old’ set but not used [-Wunused-but-set-variable] 1226 | Int4 first_bsp_coord, bsp_coord_old,old_pos; | ^~~~~~~~~~~~~ udvgraph.c: In function ‘UDV_draw_helixDNA’: udvgraph.c:1827:15: warning: variable ‘cyChar_2’ set but not used [-Wunused-but-set-variable] 1827 | Int2 cxChar_2,cyChar_2; | ^~~~~~~~ udvgraph.c: In function ‘draw_logo’: udvgraph.c:1940:38: warning: variable ‘cyGlobal’ set but not used [-Wunused-but-set-variable] 1940 | Int2 pos,cxChar=7,cyChar=13,cxGlobal,cyGlobal; | ^~~~~~~~ udvgraph.c: In function ‘UDV_draw_CDS_minus’: udvgraph.c:2337:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable] 2337 | Boolean bGiForProductOk=FALSE; | ^~~~~~~~~~~~~~~ udvgraph.c:2332:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable] 2332 | numivals2=0, | ^~~~~~~~~ udvgraph.c: In function ‘UDV_draw_CDS_plus’: udvgraph.c:2461:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable] 2461 | Boolean bGiForProductOk=FALSE; | ^~~~~~~~~~~~~~~ udvgraph.c: In function ‘UDV_draw_panel’: udvgraph.c:4111:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 4111 | if(vdp->vgp->MasterViewer == SAMVIEWDDV) | ^~ udvgraph.c:4113:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 4113 | Row = ViewMgr_GetRow(svpp, vdp->userkey); | ^~~ udvgraph.c:4041:21: warning: unused variable ‘vnp_seqinfo’ [-Wunused-variable] 4041 | ValNodePtr vnp_seqinfo=NULL; | ^~~~~~~~~~~ udvgraph.c:4035:45: warning: variable ‘nLinesDraw’ set but not used [-Wunused-but-set-variable] 4035 | Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw; | ^~~~~~~~~~ udvgraph.c:4035:37: warning: variable ‘nTotRow’ set but not used [-Wunused-but-set-variable] 4035 | Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw; | ^~~~~~~ At top level: udvgraph.c:3921:14: warning: ‘UDV_calc_decalRC’ defined but not used [-Wunused-function] 3921 | static Int4 UDV_calc_decalRC(ValNodePtr ParaG,Int4 ScrollPos, | ^~~~~~~~~~~~~~~~ udvgraph.c:3433:14: warning: ‘UDV_Draw_features_label’ defined but not used [-Wunused-function] 3433 | static void UDV_Draw_features_label(UnDViewerGraphDataPtr GrData, | ^~~~~~~~~~~~~~~~~~~~~~~ udvgraph.c:1298:13: warning: ‘UDV_AutoSelectAllSeq’ defined but not used [-Wunused-function] 1298 | static void UDV_AutoSelectAllSeq(ViewerDialogDataPtr vdp,Boolean bSelect) | ^~~~~~~~~~~~~~~~~~~~ udvgraph.c:971:14: warning: ‘UDV_draw_horz_cursor’ defined but not used [-Wunused-function] 971 | static void UDV_draw_horz_cursor(UnDViewerGraphDataPtr GrData, | ^~~~~~~~~~~~~~~~~~~~ udvgraph.c:948:13: warning: ‘UDV_draw_vert_cursor’ defined but not used [-Wunused-function] 948 | static void UDV_draw_vert_cursor(RecT rcClip,PoinT pos) | ^~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from udvgraph.c:180: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ udvgraph.c: In function ‘UDV_GetCurrentDispRange’: udvgraph.c:638:15: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 638 | *from_bsp=pgp->StartLetter; | ~~~^~~~~~~~~~~~~ udvgraph.c: In function ‘UDV_Draw_features’: udvgraph.c:3203:58: warning: ‘idx6’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3203 | UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y, | ~~~~~~~^~~~~~ udvgraph.c:3203:38: warning: ‘idx5’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3203 | UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y, | ~~~~~~~~^~~~~~ udvgraph.c:3196:47: warning: ‘idx4’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3196 | stop2=_min_(pgp->StopLetter,context->ivals[idx4]); | ^ udvgraph.c:3189:58: warning: ‘idx3’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3189 | UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y, | ~~~~~~~^~~~~~ udvgraph.c:3189:38: warning: ‘idx2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3189 | UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y, | ~~~~~~~~^~~~~~ udvgraph.c:3182:49: warning: ‘idx1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3182 | start2=_max_(pgp->StartLetter,context->ivals[idx1]); | ^ In file included from ../include/udviewer.h:225, from udvgraph.c:177: ../include/udvdef.h:187:40: warning: ‘stop_x2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 187 | #define _max_(a,b) ((a)>=(b)?(a):(b)) | ^ udvgraph.c:2803:21: note: ‘stop_x2’ was declared here 2803 | Int2 start_x,stop_x,stop_x2, /*id. but in pixels*/ | ^~~~~~~ udvgraph.c: In function ‘UDV_ClickProc’: udvgraph.c:1461:8: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1461 | UDV_SelectFeatInFeatDlg(vmp,entityID,itemID); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvopen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvopen.c:101: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ udvopen.c: In function ‘UDV_FileOpen’: udvopen.c:875:16: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 875 | ButtoN b,b1,b2; | ^~ udvopen.c:875:11: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 875 | ButtoN b,b1,b2; | ^ udvopen.c: In function ‘UDV_CreateListBioseqDlg’: udvopen.c:1180:9: warning: the address of ‘szName’ will always evaluate as ‘true’ [-Waddress] 1180 | if (szName){ | ^~~~~~ udvopen.c: In function ‘UDV_FOpenCancelProc’: udvopen.c:792:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 792 | UDV_set_PullMenus(&vmp->MainMenu,TRUE); | ^~~~~~~~~~~~~~ udvopen.c: In function ‘UDV_analyze_SEP_for_open’: udvopen.c:325:15: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized] 325 | vmp->entityID=entityID; | ~~~~~~~~~~~~~^~~~~~~~~ udvopen.c:327:14: warning: ‘dataptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] 327 | vmp->dataptr=dataptr; | ~~~~~~~~~~~~^~~~~~~~ udvopen.c: In function ‘UDV_FOpenAcceptProc’: udvopen.c:855:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 855 | UDV_set_PullMenus(&vmp->MainMenu,TRUE); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvpanel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvpanel.c:197: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ udvpanel.c: In function ‘UDV_GotoBtnProc’: udvpanel.c:2080:22: warning: variable ‘old_ivalue’ set but not used [-Wunused-but-set-variable] 2080 | Int4 iValue,old_ivalue,line_num,from_bsp,to_bsp, | ^~~~~~~~~~ udvpanel.c:2079:15: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 2079 | ValNodePtr vnp; | ^~~ udvpanel.c: In function ‘CreateMainControls’: udvpanel.c:2165:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable] 2165 | Int2 cxChar,cyChar,Margins; | ^~~~~~ udvpanel.c: In function ‘UDV_SearchFeatForKey’: udvpanel.c:3478:14: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 3478 | ButtoN b1,b2; | ^~ At top level: udvpanel.c:2773:28: warning: ‘FeaturesListBoxScan’ defined but not used [-Wunused-function] 2773 | static Boolean LIBCALLBACK FeaturesListBoxScan (SeqFeatPtr sfp, | ^~~~~~~~~~~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/udviewer.h:220, from udvpanel.c:197: udvpanel.c: In function ‘InitFeaturesListDlg’: ../include/vibdefns.h:342:19: warning: ‘pop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 342 | #define PopupItem Nlm_PopupItem | ^~~~~~~~~~~~~ udvpanel.c:3194:7: note: ‘pop’ was declared here 3194 | PopuP pop; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotvibrant.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/dotviewer.h:15, from dotvibrant.c:84: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dotvibrant.c: In function ‘DOT_DisplayHits’: dotvibrant.c:564:18: warning: variable ‘ycomp’ set but not used [-Wunused-but-set-variable] 564 | Int4 ycomp, xcomp; | ^~~~~ dotvibrant.c: In function ‘DOT_VscrlProc’: dotvibrant.c:918:16: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable] 918 | Int2 visLines, vmargin, hmargin; | ^~~~~~~~ dotvibrant.c: In function ‘DOT_HscrlProc’: dotvibrant.c:972:20: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable] 972 | Int2 dx, visLines, offset, hmargin, vmargin; | ^~~~~~~~ dotvibrant.c: In function ‘DOT_VCrossHairs’: dotvibrant.c:1402:10: warning: unused variable ‘cursor_size’ [-Wunused-variable] 1402 | Int4 cursor_size =15; | ^~~~~~~~~~~ dotvibrant.c: In function ‘DOT_HCrossHairs’: dotvibrant.c:1427:9: warning: unused variable ‘cursor_size’ [-Wunused-variable] 1427 | Int4 cursor_size = 15; | ^~~~~~~~~~~ dotvibrant.c: In function ‘DOT_MoveCrossHairs’: dotvibrant.c:1453:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable] 1453 | DOTSelDataPtr data; | ^~~~ dotvibrant.c:1452:10: warning: unused variable ‘cursor_size’ [-Wunused-variable] 1452 | Int4 cursor_size = 15; | ^~~~~~~~~~~ dotvibrant.c: In function ‘DOT_DrawXAxis’: dotvibrant.c:1532:38: warning: unused variable ‘title’ [-Wunused-variable] 1532 | Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/ | ^~~~~ dotvibrant.c: In function ‘DOT_DrawYAxis’: dotvibrant.c:1642:38: warning: unused variable ‘title’ [-Wunused-variable] 1642 | Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/ | ^~~~~ dotvibrant.c:1641:55: warning: variable ‘Fh_4’ set but not used [-Wunused-but-set-variable] 1641 | Int4 pos, ylen, x, y, scale_pos, i, j, Fh_2,Fh_4; | ^~~~ dotvibrant.c: In function ‘DOT_SVDisplayDiags’: dotvibrant.c:1770:28: warning: variable ‘aln_diag’ set but not used [-Wunused-but-set-variable] 1770 | Int4 diag, aln_diag; | ^~~~~~~~ dotvibrant.c:1770:22: warning: variable ‘diag’ set but not used [-Wunused-but-set-variable] 1770 | Int4 diag, aln_diag; | ^~~~ dotvibrant.c:1766:22: warning: variable ‘width’ set but not used [-Wunused-but-set-variable] 1766 | Int4 width, height; | ^~~~~ dotvibrant.c:1765:31: warning: variable ‘p_HFrom’ set but not used [-Wunused-but-set-variable] 1765 | Int4 p_VFrom, p_HFrom; | ^~~~~~~ dotvibrant.c:1765:22: warning: variable ‘p_VFrom’ set but not used [-Wunused-but-set-variable] 1765 | Int4 p_VFrom, p_HFrom; | ^~~~~~~ dotvibrant.c:1762:28: warning: unused variable ‘cutoff’ [-Wunused-variable] 1762 | Int4 stop, cutoff=0, q_start, s_start, length; | ^~~~~~ dotvibrant.c:1760:34: warning: variable ‘seg3’ set but not used [-Wunused-but-set-variable] 1760 | SegmenT seg1, seg2, seg3, seg4; | ^~~~ dotvibrant.c: In function ‘DOT_FillNewSeqBufs’: dotvibrant.c:2197:19: warning: unused variable ‘alp’ [-Wunused-variable] 2197 | DOTAlignInfoPtr alp=NULL; | ^~~ dotvibrant.c: In function ‘DOT_InitCInfo’: dotvibrant.c:2258:14: warning: unused variable ‘colBuf’ [-Wunused-variable] 2258 | Char colBuf[12]={""}; | ^~~~~~ dotvibrant.c: In function ‘DOT_SVDisplaySequence’: dotvibrant.c:2379:16: warning: variable ‘matrix’ set but not used [-Wunused-but-set-variable] 2379 | Int4Ptr PNTR matrix; | ^~~~~~ dotvibrant.c:2367:14: warning: variable ‘vis_2’ set but not used [-Wunused-but-set-variable] 2367 | Int4 vis_2, buf_len; | ^~~~~ dotvibrant.c:2364:14: warning: unused variable ‘prot_threshold’ [-Wunused-variable] 2364 | Int4 prot_threshold=0, bloc_cntr; | ^~~~~~~~~~~~~~ dotvibrant.c:2350:24: warning: variable ‘mip2’ set but not used [-Wunused-but-set-variable] 2350 | DOTMainDataPtr mip1, mip2; | ^~~~ dotvibrant.c: In function ‘DOT_SVClickProc’: dotvibrant.c:2807:17: warning: unused variable ‘handled’ [-Wunused-variable] 2807 | Int2 handled=0; | ^~~~~~~ dotvibrant.c: In function ‘DOT_ResizeFeatWindow’: dotvibrant.c:3016:63: warning: variable ‘SubjectHeight’ set but not used [-Wunused-but-set-variable] 3016 | Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw; | ^~~~~~~~~~~~~ dotvibrant.c:3016:51: warning: variable ‘QueryHeight’ set but not used [-Wunused-but-set-variable] 3016 | Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw; | ^~~~~~~~~~~ dotvibrant.c:3016:37: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable] 3016 | Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw; | ^~~ dotvibrant.c: In function ‘DOT_ResizeSequenceWindow’: dotvibrant.c:3098:25: warning: variable ‘is_visible2’ set but not used [-Wunused-but-set-variable] 3098 | Boolean is_visible1, is_visible2; | ^~~~~~~~~~~ dotvibrant.c:3098:12: warning: variable ‘is_visible1’ set but not used [-Wunused-but-set-variable] 3098 | Boolean is_visible1, is_visible2; | ^~~~~~~~~~~ dotvibrant.c:3095:51: warning: variable ‘V1Height’ set but not used [-Wunused-but-set-variable] 3095 | Int2 height,width,gap,vsbWidth,in,hsbHeight,V1Height,V2Height, goHeight; | ^~~~~~~~ dotvibrant.c: In function ‘DOT_HideFeatDlg’: dotvibrant.c:3745:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 3745 | ButtoN b; | ^ dotvibrant.c: In function ‘DOT_SVBuildDiagViewer’: dotvibrant.c:4031:18: warning: variable ‘mip’ set but not used [-Wunused-but-set-variable] 4031 | DOTMainDataPtr mip; | ^~~ dotvibrant.c:4029:28: warning: unused variable ‘str2’ [-Wunused-variable] 4029 | Char str1[41]={""}, str2[41]={""}; | ^~~~ dotvibrant.c:4029:13: warning: unused variable ‘str1’ [-Wunused-variable] 4029 | Char str1[41]={""}, str2[41]={""}; | ^~~~ dotvibrant.c:4022:18: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable] 4022 | PrompT pr1, pr2; | ^~~ dotvibrant.c:4022:13: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable] 4022 | PrompT pr1, pr2; | ^~~ dotvibrant.c: In function ‘DOT_UpdateDataRects’: dotvibrant.c:4166:19: warning: variable ‘dy’ set but not used [-Wunused-but-set-variable] 4166 | Int4 comp, dx, dy, xstart, ystart; | ^~ dotvibrant.c:4166:15: warning: variable ‘dx’ set but not used [-Wunused-but-set-variable] 4166 | Int4 comp, dx, dy, xstart, ystart; | ^~ dotvibrant.c: In function ‘DOT_MsgFunc’: dotvibrant.c:4215:17: warning: variable ‘vdp2’ set but not used [-Wunused-but-set-variable] 4215 | DOTVibDataPtr vdp2 = NULL; | ^~~~ dotvibrant.c: In function ‘DOT_ReleaseProc’: dotvibrant.c:4373:32: warning: unused variable ‘yaxis_incr’ [-Wunused-variable] 4373 | Boolean xaxis_incr=TRUE, yaxis_incr=TRUE; | ^~~~~~~~~~ dotvibrant.c:4373:15: warning: unused variable ‘xaxis_incr’ [-Wunused-variable] 4373 | Boolean xaxis_incr=TRUE, yaxis_incr=TRUE; | ^~~~~~~~~~ dotvibrant.c:4371:19: warning: variable ‘alp’ set but not used [-Wunused-but-set-variable] 4371 | DOTAlignInfoPtr alp=NULL; | ^~~ dotvibrant.c:4370:18: warning: variable ‘mip1’ set but not used [-Wunused-but-set-variable] 4370 | DOTMainDataPtr mip1=NULL; | ^~~~ dotvibrant.c: In function ‘DOT_StartDOTPLOT’: dotvibrant.c:4891:23: warning: variable ‘vdp’ set but not used [-Wunused-but-set-variable] 4891 | DOTVibDataPtr vdp; | ^~~ dotvibrant.c: In function ‘DOT_DoZoom’: dotvibrant.c:5106:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable] 5106 | DOTSelDataPtr data; | ^~~~ dotvibrant.c: In function ‘DOT_ZoomProc’: dotvibrant.c:5204:23: warning: variable ‘temport’ set but not used [-Wunused-but-set-variable] 5204 | WindoW temport, w; | ^~~~~~~ dotvibrant.c: In function ‘AlnMgr2GetNextLine’: dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value] 5315 | *n++; | ^~~~ dotvibrant.c: In function ‘DOT_GetAlign’: dotvibrant.c:5332:44: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 5332 | Int4 x1, y1, x2, y2, numlines=0, n=0, i=0; | ^ dotvibrant.c: In function ‘DOT_FillAlignInfoPointer’: dotvibrant.c:5565:16: warning: unused variable ‘i’ [-Wunused-variable] 5565 | Int4 i=0, n=0; | ^ dotvibrant.c: In function ‘DOT_Prob_FillAlignInfoPointer’: dotvibrant.c:5681:16: warning: unused variable ‘i’ [-Wunused-variable] 5681 | Int4 i=0, n=0; | ^ dotvibrant.c:5680:16: warning: unused variable ‘numsaps’ [-Wunused-variable] 5680 | Int4 numsaps = 0, numlines = 0; | ^~~~~~~ dotvibrant.c:5678:37: warning: unused variable ‘sap_tmp’ [-Wunused-variable] 5678 | SeqAlignPtr sap=NULL, salp=NULL, sap_tmp=NULL; | ^~~~~~~ dotvibrant.c: In function ‘DOT_DoBlast’: dotvibrant.c:5918:23: warning: unused variable ‘eval’ [-Wunused-variable] 5918 | Char eval[11]={""}; | ^~~~ dotvibrant.c:5917:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable] 5917 | Boolean is_local; | ^~~~~~~~ dotvibrant.c:5915:23: warning: unused variable ‘entityID’ [-Wunused-variable] 5915 | Uint2 entityID=0; | ^~~~~~~~ dotvibrant.c: In function ‘DOT_CreateWindowDetails’: dotvibrant.c:6214:27: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable] 6214 | PrompT pr1, pr2; | ^~~ dotvibrant.c:6214:22: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable] 6214 | PrompT pr1, pr2; | ^~~ dotvibrant.c:6207:21: warning: variable ‘g1’ set but not used [-Wunused-but-set-variable] 6207 | GrouP g, g1, g2; | ^~ dotvibrant.c: In function ‘DOT_ResizeMainWindow’: dotvibrant.c:6273:35: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable] 6273 | Int2 height, width, in , gap; | ^~~ dotvibrant.c: In function ‘DOT_FindAlignment’: dotvibrant.c:6662:29: warning: unused variable ‘rb_fixed’ [-Wunused-variable] 6662 | Boolean lt_fixed=FALSE, rb_fixed=FALSE; | ^~~~~~~~ dotvibrant.c:6662:13: warning: unused variable ‘lt_fixed’ [-Wunused-variable] 6662 | Boolean lt_fixed=FALSE, rb_fixed=FALSE; | ^~~~~~~~ dotvibrant.c:6661:17: warning: variable ‘data’ set but not used [-Wunused-but-set-variable] 6661 | DOTSelDataPtr data; | ^~~~ dotvibrant.c: In function ‘SCP_CompareOrderOrganizeBioseqs’: dotvibrant.c:6792:25: warning: variable ‘itemID’ set but not used [-Wunused-but-set-variable] 6792 | Uint4 itemID=0; | ^~~~~~ dotvibrant.c: In function ‘SCP_OrganizeAlnsInSet’: dotvibrant.c:6873:21: warning: variable ‘indextype’ set but not used [-Wunused-but-set-variable] 6873 | Int4 indextype; | ^~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/alignmgr2.h:111, from ../include/actutils.h:105, from ../include/dotviewer.h:32, from dotvibrant.c:84: dotvibrant.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/dotviewer.h:32, from dotvibrant.c:84: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ dotvibrant.c:6642:16: warning: ‘DOT_DeselectPrim’ defined but not used [-Wunused-function] 6642 | static Boolean DOT_DeselectPrim (SegmenT seg, PrimitivE prim, Uint2 segID,Uint2 primID, Uint2 primCt, VoidPtr userdata) | ^~~~~~~~~~~~~~~~ dotvibrant.c:6346:13: warning: ‘DOT_NewAnalysis’ defined but not used [-Wunused-function] 6346 | static void DOT_NewAnalysis (ButtoN b) | ^~~~~~~~~~~~~~~ dotvibrant.c:5894:16: warning: ‘DOT_get_eval’ defined but not used [-Wunused-function] 5894 | static FloatHi DOT_get_eval(Int4 exp) | ^~~~~~~~~~~~ dotvibrant.c:5325:16: warning: ‘DOT_GetAlign’ defined but not used [-Wunused-function] 5325 | static Boolean DOT_GetAlign (DOTAlignInfoPtr alp) | ^~~~~~~~~~~~ dotvibrant.c:5281:16: warning: ‘AlnMgr2GetNextLine’ defined but not used [-Wunused-function] 5281 | static Boolean AlnMgr2GetNextLine(SeqAlignPtr sap, AlnMsg2Ptr amp1, AlnMsg2Ptr amp2, Int4Ptr x1, Int4Ptr y1, Int4Ptr x2, Int4Ptr y2, Int4Ptr n) | ^~~~~~~~~~~~~~~~~~ dotvibrant.c:4767:13: warning: ‘DOT_FeatAnalysisProc’ defined but not used [-Wunused-function] 4767 | static void DOT_FeatAnalysisProc(ButtoN b) | ^~~~~~~~~~~~~~~~~~~~ dotvibrant.c:4749:13: warning: ‘DOT_GetInfoProc’ defined but not used [-Wunused-function] 4749 | static void DOT_GetInfoProc (IteM i) | ^~~~~~~~~~~~~~~ dotvibrant.c:4213:25: warning: ‘DOT_MsgFunc’ defined but not used [-Wunused-function] 4213 | static Int2 LIBCALLBACK DOT_MsgFunc (OMMsgStructPtr ommsp) | ^~~~~~~~~~~ dotvibrant.c:3688:13: warning: ‘DOT_HideAcceptProc’ defined but not used [-Wunused-function] 3688 | static void DOT_HideAcceptProc(ButtoN b) | ^~~~~~~~~~~~~~~~~~ dotvibrant.c:3318:13: warning: ‘DOT_AddFeatureToSegment’ defined but not used [-Wunused-function] 3318 | static void DOT_AddFeatureToSegment(SeqMgrFeatContextPtr context, | ^~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2954:13: warning: ‘DOT_SVChangeLabels’ defined but not used [-Wunused-function] 2954 | static void DOT_SVChangeLabels (GrouP g) | ^~~~~~~~~~~~~~~~~~ dotvibrant.c:2760:16: warning: ‘DOT_SVGetDiag’ defined but not used [-Wunused-function] 2760 | static Boolean DOT_SVGetDiag (Uint2 segID, Uint2 primID, VoidPtr userdata) | ^~~~~~~~~~~~~ dotvibrant.c: In function ‘DOT_GetNthSeqFromAlign’: dotvibrant.c:5087:3: warning: ‘spp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5087 | SeqPortFree(spp); | ^~~~~~~~~~~~~~~~ dotvibrant.c: In function ‘DOT_SVPopulateSequenceViewer.part.0’: dotvibrant.c:2611:19: warning: ‘strand2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2611 | DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2380:23: note: ‘strand2’ was declared here 2380 | Uint1 strand1, strand2; | ^~~~~~~ dotvibrant.c:2611:19: warning: ‘strand1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2611 | DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2380:14: note: ‘strand1’ was declared here 2380 | Uint1 strand1, strand2; | ^~~~~~~ dotvibrant.c:2561:45: warning: ‘residue_names’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2561 | sBuf[c]=*residue_names[(int)*s]; | ^ dotvibrant.c:2378:16: note: ‘residue_names’ was declared here 2378 | CharPtr PNTR residue_names; | ^~~~~~~~~~~~~ dotvibrant.c:2611:19: warning: ‘s_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2611 | DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2370:42: note: ‘s_pos’ was declared here 2370 | Int4 hit_start, hit_stop, q_pos, s_pos; | ^~~~~ dotvibrant.c:2611:19: warning: ‘q_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2611 | DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2370:35: note: ‘q_pos’ was declared here 2370 | Int4 hit_start, hit_stop, q_pos, s_pos; | ^~~~~ dotvibrant.c:2504:21: warning: ‘hit_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2504 | hit_stop+=hit_stop/10; | ~~~~~~~~^~~ dotvibrant.c:2370:25: note: ‘hit_stop’ was declared here 2370 | Int4 hit_start, hit_stop, q_pos, s_pos; | ^~~~~~~~ dotvibrant.c:2572:27: warning: ‘hit_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2572 | DOT_HlSeq(sbSeg, rc, margin, i+1, bloc_size, hit_start, hit_stop, Fh,chw_2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2370:14: note: ‘hit_start’ was declared here 2370 | Int4 hit_start, hit_stop, q_pos, s_pos; | ^~~~~~~~~ dotvibrant.c:2503:16: warning: ‘buf_len’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2503 | end=s+buf_len-1; | ^ dotvibrant.c:2367:21: note: ‘buf_len’ was declared here 2367 | Int4 vis_2, buf_len; | ^~~~~~~ dotvibrant.c:2545:18: warning: ‘is_na’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2545 | if (is_na) | ^ dotvibrant.c:2361:27: note: ‘is_na’ was declared here 2361 | Boolean ambig=FALSE, is_na; | ^~~~~ dotvibrant.c:2503:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2503 | end=s+buf_len-1; | ~~~^~~~~~~~~~~~ dotvibrant.c:2357:14: note: ‘s’ was declared here 2357 | Uint1Ptr s; | ^ dotvibrant.c:2356:14: warning: ‘q’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2356 | Uint1Ptr q; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dlgutil1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from dlgutil1.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dlgutil1.c: In function ‘IsAuthList’: dlgutil1.c:2962:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 2962 | Int4 len; | ^~~ dlgutil1.c: In function ‘TestIntervalEditor’: dlgutil1.c:5324:20: warning: variable ‘fuzz_to’ set but not used [-Wunused-but-set-variable] 5324 | Int2 fuzz_to; | ^~~~~~~ dlgutil1.c:5323:20: warning: variable ‘fuzz_from’ set but not used [-Wunused-but-set-variable] 5323 | Int2 fuzz_from; | ^~~~~~~~~ dlgutil1.c:5322:41: warning: variable ‘fuzz_before’ set but not used [-Wunused-but-set-variable] 5322 | Boolean isInterval, isPoint, fuzz_before, fuzz_after; | ^~~~~~~~~~~ dlgutil1.c: In function ‘DbtagDialogToDbtagPtr’: dlgutil1.c:7254:16: warning: unused variable ‘val’ [-Wunused-variable] 7254 | long int val; | ^~~ dlgutil1.c:7250:16: warning: unused variable ‘ptr’ [-Wunused-variable] 7250 | CharPtr ptr; | ^~~ dlgutil1.c:7247:16: warning: unused variable ‘num_digits’ [-Wunused-variable] 7247 | Int2 num_digits; | ^~~~~~~~~~ dlgutil1.c:7246:16: warning: unused variable ‘notallzero’ [-Wunused-variable] 7246 | Boolean notallzero; | ^~~~~~~~~~ dlgutil1.c:7243:16: warning: unused variable ‘leadingzero’ [-Wunused-variable] 7243 | Boolean leadingzero; | ^~~~~~~~~~~ dlgutil1.c:7238:16: warning: unused variable ‘alldigits’ [-Wunused-variable] 7238 | Boolean alldigits; | ^~~~~~~~~ dlgutil1.c: In function ‘CreateStandardEditMenu’: dlgutil1.c:9427:8: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 9427 | IteM i; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from dlgutil1.c:55: dlgutil1.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ dlgutil1.c:8603:25: warning: ‘GetNthNameValuePair’ defined but not used [-Wunused-function] 8603 | static NameValuePairPtr GetNthNameValuePair (Int4 n, ValNodePtr list) | ^~~~~~~~~~~~~~~~~~~ dlgutil1.c:8051:16: warning: ‘ParseSpecimenVoucherOk’ defined but not used [-Wunused-function] 8051 | static Boolean ParseSpecimenVoucherOk (CharPtr str) | ^~~~~~~~~~~~~~~~~~~~~~ dlgutil1.c:1293:13: warning: ‘GbqualsToVisStringDialog’ defined but not used [-Wunused-function] 1293 | static void GbqualsToVisStringDialog (SeqFeatPtr sfp, DialoG d, CharPtr qual) | ^~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dlgutil2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from dlgutil2.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dlgutil2.c: In function ‘CreateImportFields’: dlgutil2.c:1401:19: warning: variable ‘is_gap’ set but not used [-Wunused-but-set-variable] 1401 | Boolean is_gap = FALSE; | ^~~~~~ dlgutil2.c: In function ‘UpdateTableDisplayDialogScrollBars’: dlgutil2.c:3552:11: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] 3552 | Int4 x, y; | ^ dlgutil2.c:3552:8: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] 3552 | Int4 x, y; | ^ dlgutil2.c: In function ‘GetTableDisplayCell’: dlgutil2.c:3951:8: warning: variable ‘start_row’ set but not used [-Wunused-but-set-variable] 3951 | Int4 start_row, start_col; | ^~~~~~~~~ dlgutil2.c: In function ‘NewCreateInferenceDialog’: dlgutil2.c:7633:19: warning: variable ‘fnt’ set but not used [-Wunused-but-set-variable] 7633 | FonT fnt; | ^~~ dlgutil2.c: In function ‘ClickableListOnKey’: dlgutil2.c:10479:20: warning: variable ‘clp’ set but not used [-Wunused-but-set-variable] 10479 | ClickableListPtr clp; | ^~~ dlgutil2.c: In function ‘GetSelectedClickableListText’: dlgutil2.c:11151:36: warning: variable ‘char_offset’ set but not used [-Wunused-but-set-variable] 11151 | Int2 item, row, col, char_offset; | ^~~~~~~~~~~ dlgutil2.c: In function ‘AutomatchFeatures’: dlgutil2.c:14210:36: warning: variable ‘s3’ set but not used [-Wunused-but-set-variable] 14210 | SeqIntPtr s1, s2, s3; | ^~ At top level: dlgutil2.c:12342:16: warning: ‘ParseMultiListQualOk’ defined but not used [-Wunused-function] 12342 | static Boolean ParseMultiListQualOk (CharPtr val) | ^~~~~~~~~~~~~~~~~~~~ dlgutil2.c:10336:13: warning: ‘ClickClickableListItem’ defined but not used [-Wunused-function] 10336 | static void ClickClickableListItem (DoC d, PoinT pt) | ^~~~~~~~~~~~~~~~~~~~~~ dlgutil2.c:10316:13: warning: ‘DrawClickableListItem’ defined but not used [-Wunused-function] 10316 | static void DrawClickableListItem (DoC d, RectPtr r, Int2 item, Int2 firstLine) | ^~~~~~~~~~~~~~~~~~~~~ dlgutil2.c:8854:13: warning: ‘GetCategoryNumFromName’ defined but not used [-Wunused-function] 8854 | static Int4 GetCategoryNumFromName (CharPtr category) | ^~~~~~~~~~~~~~~~~~~~~~ dlgutil2.c:1676:16: warning: ‘GetNameForFeature’ defined but not used [-Wunused-function] 1676 | static CharPtr GetNameForFeature (SeqFeatPtr sfp) | ^~~~~~~~~~~~~~~~~ dlgutil2.c: In function ‘PopulateDayPopup’: dlgutil2.c:11438:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 11438 | sprintf (day, "%d", i); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from dlgutil2.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF e2trmlst.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from e2trmlst.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ e2trmlst.c: In function ‘ReadAFew’: e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value] 2230 | for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF e2docsum.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from e2docsum.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ e2docsum.c: In function ‘FormatCdsSeq’: e2docsum.c:1523:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable] 1523 | SeqFeatPtr gene = NULL; | ^~~~ e2docsum.c: In function ‘FetchSequence’: e2docsum.c:1591:16: warning: variable ‘currDbName’ set but not used [-Wunused-but-set-variable] 1591 | CharPtr currDbName; | ^~~~~~~~~~ e2docsum.c:1580:16: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable] 1580 | Uint1 group_segs = 0; | ^~~~~~~~~~ e2docsum.c: In function ‘SaveDocsumProject’: e2docsum.c:3606:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable] 3606 | SummFormPtr sfp; | ^~~ e2docsum.c: In function ‘RetrieveGeneration’: e2docsum.c:4135:19: warning: variable ‘e2ip’ set but not used [-Wunused-but-set-variable] 4135 | Entrez2InfoPtr e2ip; | ^~~~ e2docsum.c: In function ‘SetupMenus’: e2docsum.c:4849:16: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 4849 | ChoicE c; | ^ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/bspview.h:48, from e2docsum.c:53: e2docsum.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strucapi.h:52, from e2docsum.c:62: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ e2docsum.c: In function ‘LaunchStructureViewer’: e2docsum.c:2981:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2981 | system (cmmd); | ^~~~~~~~~~~~~ e2docsum.c: In function ‘LaunchSequin’: e2docsum.c:2838:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2838 | system (cmmd); | ^~~~~~~~~~~~~ At top level: e2docsum.c:2883:13: warning: ‘GetBiostrucMaxModels’ defined but not used [-Wunused-function] 2883 | static Int4 GetBiostrucMaxModels (void) | ^~~~~~~~~~~~~~~~~~~~ e2docsum.c:2850:13: warning: ‘GetBiostrucComplexity’ defined but not used [-Wunused-function] 2850 | static Int4 GetBiostrucComplexity (void) | ^~~~~~~~~~~~~~~~~~~~~ e2docsum.c:2154:20: warning: ‘cddDocProcs’ defined but not used [-Wunused-variable] 2154 | static DocPrntProc cddDocProcs [] = { Query_FetchDocSum, Query_FetchFields, FetchUid, NULL }; | ^~~~~~~~~~~ e2docsum.c: In function ‘LaunchStructureViewer’: e2docsum.c:2980:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=] 2980 | sprintf (cmmd, "Cn3D %s &", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from e2docsum.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ e2docsum.c: In function ‘LaunchSequin.constprop’: e2docsum.c:2837:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4084 [-Wformat-overflow=] 2837 | sprintf (cmmd, "sequin -x < %s &", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from e2docsum.c:42: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2graphic.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2graphic.c: In function ‘ParseFilterItem’: asn2graphic.c:1191:21: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 1191 | Int2 i, j; | ^ asn2graphic.c: In function ‘GeneProductsLayoutInternal’: asn2graphic.c:3730:36: warning: variable ‘featureStart’ set but not used [-Wunused-but-set-variable] 3730 | Int4 newLeft, featureStart, rowMaxRight; | ^~~~~~~~~~~~ asn2graphic.c: In function ‘ScaleSntDrawProc’: asn2graphic.c:4402:28: warning: variable ‘r’ set but not used [-Wunused-but-set-variable] 4402 | RecT r; | ^ asn2graphic.c: In function ‘GphSentProc’: asn2graphic.c:4997:16: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable] 4997 | Int4 scaleY; | ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2graphic.c:46: asn2graphic.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asn2graphic.c: In function ‘ProcessRows’: asn2graphic.c:4362:13: warning: ‘SegmentTreeBot’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4362 | if (! EnsureFeatureHasSegment (FPSP, featdeftype, SegmentTreeBot)) return 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2graphic.h:46, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: ../include/picture.h:499:23: warning: ‘SegmentTreeMid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 499 | #define CreateSegment Nlm_CreateSegment | ^~~~~~~~~~~~~~~~~ asn2graphic.c:4278:27: note: ‘SegmentTreeMid’ was declared here 4278 | SegmenT SegmentTreeMid; | ^~~~~~~~~~~~~~ In file included from ../include/asn2graphic.h:46, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: ../include/picture.h:499:23: warning: ‘SegmentTreeTop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 499 | #define CreateSegment Nlm_CreateSegment | ^~~~~~~~~~~~~~~~~ asn2graphic.c:4277:27: note: ‘SegmentTreeTop’ was declared here 4277 | SegmenT SegmentTreeTop; | ^~~~~~~~~~~~~~ asn2graphic.c: In function ‘ParseConfigFile’: asn2graphic.c:1198:27: warning: ‘%s’ directive writing up to 127 bytes into a region of size 120 [-Wformat-overflow=] 1198 | sprintf (sect, "filters.%s", filterItemName); | ^~ ...... 1500 | FIP = ParseFilterItem (buf, defaultRowPadding, defaultGroupPadding, defaultLayout, VCP); | ~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 136 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:946:21: warning: ‘.master’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 946 | sprintf (sect, "%s.master", appearanceNameInFile); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1006:29: warning: ‘.bioseq’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 1006 | sprintf (outputBuffer, "%s.bioseq", appearanceNameInFile); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1008:29: warning: ‘.imp’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 1008 | sprintf (outputBuffer, "%s.imp", appearanceNameInFile); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1011:31: warning: ‘.import’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] 1011 | sprintf (outputBuffer, "%s.import", appearanceNameInFile); | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1021:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1021 | sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i)); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 129) into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1021:32: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 127 [-Wformat-overflow=] 707 | featName = "graph"; | ~~~~~~~ ...... 1021 | sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i)); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 134 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1021:32: warning: ‘%s’ directive writing between 5 and 7 bytes into a region of size between 0 and 127 [-Wformat-overflow=] 1021 | sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i)); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 136 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF medview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/medview.h:48, from medview.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ medview.c: In function ‘PrintMedlineViewForm’: medview.c:588:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 588 | system (cmmd); | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bspview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from bspview.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbfview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from gbfview.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gbfview.c: In function ‘RelModeFailText’: gbfview.c:1004:22: warning: variable ‘hasPubs’ set but not used [-Wunused-but-set-variable] 1004 | Boolean hasPubs; | ^~~~~~~ gbfview.c: In function ‘PopulateFlatFile’: gbfview.c:1292:22: warning: variable ‘doColors’ set but not used [-Wunused-but-set-variable] 1292 | Boolean doColors; | ^~~~~~~~ gbfview.c: In function ‘PopulateFasta’: gbfview.c:1717:33: warning: left-hand operand of comma expression has no effect [-Wunused-value] 1717 | if (ISA_na (bsp->mol)) {TRUE, | ^ gbfview.c:1649:20: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable] 1649 | Uint1 group_segs; | ^~~~~~~~~~ gbfview.c: In function ‘PopulateAsnOrXML’: gbfview.c:1972:16: warning: variable ‘lookupFar’ set but not used [-Wunused-but-set-variable] 1972 | Boolean lookupFar = FALSE; | ^~~~~~~~~ gbfview.c:1971:16: warning: variable ‘lockFar’ set but not used [-Wunused-but-set-variable] 1971 | Boolean lockFar = FALSE; | ^~~~~~~ gbfview.c: In function ‘PrintFlatFileFastaOrAsn’: gbfview.c:2494:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2494 | system (cmmd); | ^~~~~~~~~~~~~ gbfview.c: In function ‘ReleaseIcon’: gbfview.c:667:21: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 667 | system (cmmd); | ^~~~~~~~~~~~~ At top level: gbfview.c:1234:13: warning: ‘LookForFarProds’ defined but not used [-Wunused-function] 1234 | static void LookForFarProds ( | ^~~~~~~~~~~~~~~ gbfview.c:1215:13: warning: ‘LookForFarBsp’ defined but not used [-Wunused-function] 1215 | static void LookForFarBsp ( | ^~~~~~~~~~~~~ gbfview.c:944:13: warning: ‘LookForPubs’ defined but not used [-Wunused-function] 944 | static void LookForPubs (BioseqPtr bsp, Pointer userdata) | ^~~~~~~~~~~ gbfview.c:289:16: warning: ‘ColorIcon’ defined but not used [-Wunused-function] 289 | static Boolean ColorIcon ( | ^~~~~~~~~ gbfview.c: In function ‘ReleaseIcon’: gbfview.c:666:42: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=] 666 | sprintf (cmmd, "open %s", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from gbfview.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gphview.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from gphview.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gphview.c: In function ‘ReleaseAlignment’: gphview.c:1306:18: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable] 1306 | SeqLocPtr slp; | ^~~ gphview.c: In function ‘DrawAlignOnAllSequences’: gphview.c:1391:10: warning: variable ‘vn’ set but not used [-Wunused-but-set-variable] 1391 | ValNode vn; | ^~ gphview.c: In function ‘ReleaseDesktop’: gphview.c:1836:18: warning: variable ‘seg’ set but not used [-Wunused-but-set-variable] 1836 | SegmenT seg; | ^~~ gphview.c: In function ‘AutoScrollGeneName’: gphview.c:2100:21: warning: variable ‘num’ set but not used [-Wunused-but-set-variable] 2100 | Int2 num; | ^~~ gphview.c: In function ‘DisplayGeneChoiceWindow’: gphview.c:2426:22: warning: variable ‘p’ set but not used [-Wunused-but-set-variable] 2426 | PrompT p; | ^ gphview.c: In function ‘PrintGraphical’: gphview.c:3268:14: warning: unused variable ‘ans’ [-Wunused-variable] 3268 | MsgAnswer ans; | ^~~ gphview.c: In function ‘PopulateAsn2GphGraphic’: gphview.c:3868:16: warning: variable ‘min’ set but not used [-Wunused-but-set-variable] 3868 | Int4 min; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gphdraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from gphdraw.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gphdraw.c: In function ‘GraphSentProc’: gphdraw.c:195:18: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable] 195 | Int4 scaleY; | ^~~~~~ gphdraw.c: In function ‘DrawGraphToPanel’: gphdraw.c:453:27: warning: variable ‘xp’ set but not used [-Wunused-but-set-variable] 453 | Int4Ptr xpoints, xp; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gxydraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from gxydraw.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gxydraw.c: In function ‘DotXYPlot’: gxydraw.c:259:19: warning: ‘xaxiscount’ may be used uninitialized in this function [-Wmaybe-uninitialized] 259 | gsp->xaxiscount = xaxiscount; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ gxydraw.c:182:19: note: ‘xaxiscount’ was declared here 182 | Int4 xaxiscount, yaxiscount; | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gtrdraw.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from gtrdraw.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqpanel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqpanel.c: In function ‘FillFeatureInfo’: seqpanel.c:427:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable] 427 | Int4 j, start, stop; | ^~~~ seqpanel.c:427:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 427 | Int4 j, start, stop; | ^~~~~ seqpanel.c: In function ‘DrawFeatureCodonLines’: seqpanel.c:1897:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 1897 | Char tmp[2]; | ^~~ seqpanel.c: In function ‘DrawFeature’: seqpanel.c:2127:21: warning: variable ‘prot_len’ set but not used [-Wunused-but-set-variable] 2127 | Int4 prot_len; | ^~~~~~~~ seqpanel.c: In function ‘GetSeqChapterFeatureInfo’: seqpanel.c:3136:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable] 3136 | Int4 j, start, stop; | ^~~~ seqpanel.c:3136:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 3136 | Int4 j, start, stop; | ^~~~~ seqpanel.c: In function ‘onSeqEdVScrollBarSeqPanel’: seqpanel.c:3406:17: warning: variable ‘totallines’ set but not used [-Wunused-but-set-variable] 3406 | Int4 totallines; | ^~~~~~~~~~ seqpanel.c: In function ‘PrintFeature’: seqpanel.c:3812:28: warning: variable ‘fRight’ set but not used [-Wunused-but-set-variable] 3812 | Int4 fLeft, fRight, swap; | ^~~~~~ seqpanel.c:3812:21: warning: variable ‘fLeft’ set but not used [-Wunused-but-set-variable] 3812 | Int4 fLeft, fRight, swap; | ^~~~~ seqpanel.c: In function ‘PrintTranslatedFrame’: seqpanel.c:3966:17: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 3966 | Char tmp[2]; | ^~~ seqpanel.c: In function ‘ExportSequenceText’: seqpanel.c:4372:44: warning: pointer targets in passing argument 1 of ‘complement_string’ differ in signedness [-Wpointer-sign] 4372 | complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET); | ^ | | | Nlm_Uint1Ptr {aka unsigned char *} In file included from ../include/alignmgr2.h:112, from seqpanel.c:39: ../include/salutil.h:78:47: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1Ptr’ {aka ‘unsigned char *’} 78 | NLM_EXTERN CharPtr complement_string (CharPtr str); seqpanel.c:4236:17: warning: variable ‘curr_para_strings’ set but not used [-Wunused-but-set-variable] 4236 | ValNodePtr curr_para_strings = NULL; | ^~~~~~~~~~~~~~~~~ seqpanel.c:4229:17: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable] 4229 | Uint1Ptr buf; | ^~~ seqpanel.c: In function ‘SeqEdOnClick’: seqpanel.c:4946:21: warning: variable ‘direction’ set but not used [-Wunused-but-set-variable] 4946 | Int4 direction; | ^~~~~~~~~ seqpanel.c: In function ‘SeqAlnOnDrag’: seqpanel.c:5685:34: warning: variable ‘is_ctrl’ set but not used [-Wunused-but-set-variable] 5685 | Boolean is_double_click, is_ctrl; | ^~~~~~~ seqpanel.c:5685:17: warning: variable ‘is_double_click’ set but not used [-Wunused-but-set-variable] 5685 | Boolean is_double_click, is_ctrl; | ^~~~~~~~~~~~~~~ seqpanel.c: In function ‘ResizeSeqEdView’: seqpanel.c:5760:8: warning: variable ‘sequence_pos’ set but not used [-Wunused-but-set-variable] 5760 | Int4 sequence_pos = 0; | ^~~~~~~~~~~~ seqpanel.c:5755:8: warning: variable ‘height’ set but not used [-Wunused-but-set-variable] 5755 | Int4 height, width; | ^~~~~~ seqpanel.c: In function ‘WriteAlignmentInterleaveToFileEx’: seqpanel.c:8665:22: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types] 8665 | fputs (fp, printed_line); | ^~ | | | FILE * In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/stdio.h:626:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’ 626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream); | ~~~~~~~~~~~~~~~~~~~~~~~^~~ seqpanel.c:8665:26: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types] 8665 | fputs (fp, printed_line); | ^~~~~~~~~~~~ | | | Nlm_CharPtr {aka char *} In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/stdio.h:626:64: note: expected ‘FILE * restrict’ but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’} 626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream); | ~~~~~~~~~~~~~~~~~^~~~~~~~ seqpanel.c: In function ‘WriteAlignmentContiguousToFile’: seqpanel.c:8761:20: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types] 8761 | fputs (fp, printed_line); | ^~ | | | FILE * In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/stdio.h:626:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’ 626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream); | ~~~~~~~~~~~~~~~~~~~~~~~^~~ seqpanel.c:8761:24: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types] 8761 | fputs (fp, printed_line); | ^~~~~~~~~~~~ | | | Nlm_CharPtr {aka char *} In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/arm-linux-gnueabihf/include/stdio.h:626:64: note: expected ‘FILE * restrict’ but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’} 626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream); | ~~~~~~~~~~~~~~~~~^~~~~~~~ seqpanel.c: In function ‘ReverseSequenceStrandsInAlignment’: seqpanel.c:9008:17: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 9008 | SeqEntryPtr sep; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from seqpanel.c:39: seqpanel.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ seqpanel.c:1171:16: warning: ‘GetAlignmentColumnPercentIDsForAlignmentSection’ defined but not used [-Wunused-function] 1171 | static double *GetAlignmentColumnPercentIDsForAlignmentSection (BioseqViewPtr bvp, Int4 line, Int4 aln_idx) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: seqpanel.c: In function ‘SeqEdFindPatternDialog’: ../include/vibdefns.h:535:22: warning: ‘g1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 535 | #define AlignObjects Nlm_AlignObjects | ^~~~~~~~~~~~~~~~ seqpanel.c:7632:25: note: ‘g1’ was declared here 7632 | GrouP h, g1, g2; | ^~ In file included from ../include/ncbi.h:62, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: seqpanel.c: In function ‘PrintFeature’: ../include/ncbistr.h:331:19: warning: ‘str_prot’ may be used uninitialized in this function [-Wmaybe-uninitialized] 331 | #define StringLen Nlm_StringLen | ^~~~~~~~~~~~~ seqpanel.c:3810:21: note: ‘str_prot’ was declared here 3810 | CharPtr str_prot; | ^~~~~~~~ seqpanel.c: In function ‘SeqEdExportProc’: seqpanel.c:4329:13: warning: ‘seq_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4329 | SeqEdPrintTextLineToFile ((CharPtr)file_line, from, to, seq_pos, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqpanel.c:4233:17: note: ‘seq_pos’ was declared here 4233 | Int4 seq_pos; | ^~~~~~~ seqpanel.c: In function ‘onDrawSeqPanel’: seqpanel.c:1301:24: warning: ‘alnbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1301 | MemCpy(buf, alnbuf + from, len); | ~~~~~~~^~~~~~ seqpanel.c:2466:33: note: ‘alnbuf’ was declared here 2466 | Uint1Ptr buf, seqbuf, alnbuf; | ^~~~~~ seqpanel.c:1252:3: warning: ‘seqbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1252 | AlignmentIntervalToString (tmp_salp, row, start, stop, bvp->TargetRow, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | bvp->viewWholeEntity, seqbuf, alnbuf, &alnbuf_len, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | bvp->showAlnSubstitutions); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ seqpanel.c:2466:25: note: ‘seqbuf’ was declared here 2466 | Uint1Ptr buf, seqbuf, alnbuf; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingengraph.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/ingengraph.h:52, from ingengraph.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ingengraph.c: In function ‘Ing_BigEncodeIdxFeat’: ingengraph.c:262:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 262 | return *((Uint8Ptr) index_g); | ~^~~~~~~~~~~~~~~~~~~ ingengraph.c: In function ‘Ing_AddOneAlignToOverviewPage’: ingengraph.c:355:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 355 | else | ^~~~ ingengraph.c:357:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 357 | prim = AddRectangle(seg, start, (row)*(-20), stop, (row)*(-20)+j, NO_ARROW, FALSE,0); | ^~~~ ingengraph.c:347:13: warning: unused variable ‘bsp’ [-Wunused-variable] 347 | BioseqPtr bsp=NULL; | ^~~ ingengraph.c: In function ‘Ing_AddAlignsToOverviewPage’: ingengraph.c:372:18: warning: unused variable ‘buf’ [-Wunused-variable] 372 | Char buf[41]={""}; | ^~~ ingengraph.c:367:18: warning: variable ‘NewLine’ set but not used [-Wunused-but-set-variable] 367 | Boolean NewLine=FALSE; | ^~~~~~~ ingengraph.c: In function ‘Ing_DrawOverviewPage’: ingengraph.c:492:14: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 492 | Int4 offset; | ^~~~~~ In file included from ../include/vibrant.h:130, from ../include/ingengraph.h:54, from ingengraph.c:45: ../include/vibdefns.h:468:17: warning: unused variable ‘Nlm_Visible’ [-Wunused-variable] 468 | #define Visible Nlm_Visible | ^~~~~~~~~~~ ingengraph.c:488:14: note: in expansion of macro ‘Visible’ 488 | Boolean Visible=FALSE; | ^~~~~~~ ingengraph.c: In function ‘Ing_PopOverviewPage’: ingengraph.c:715:16: warning: variable ‘margin’ set but not used [-Wunused-but-set-variable] 715 | Int4 margin, len; | ^~~~~~ ingengraph.c:714:16: warning: unused variable ‘buf’ [-Wunused-variable] 714 | Char buf[50]={""}; | ^~~ ingengraph.c:708:16: warning: unused variable ‘sanp’ [-Wunused-variable] 708 | SeqAnnotPtr sanp=NULL; | ^~~~ ingengraph.c: In function ‘Ing_AddAlignsToDetailedPage’: ingengraph.c:1097:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1097 | if ((start - offset - (label_len - feat_len)/2)<0) | ^~ ingengraph.c:1099:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1099 | if (bOver_the_edge) | ^~ ingengraph.c: In function ‘Ing_PopDetailedPage’: ingengraph.c:1437:16: warning: variable ‘CurrentSeg’ set but not used [-Wunused-but-set-variable] 1437 | SegmenT CurrentSeg=NULL; | ^~~~~~~~~~ ingengraph.c: In function ‘Ing_ExploreSegments’: ingengraph.c:1829:22: warning: unused variable ‘isDraft’ [-Wunused-variable] 1829 | Boolean isDraft = FALSE; | ^~~~~~~ ingengraph.c:1827:22: warning: unused variable ‘vnp’ [-Wunused-variable] 1827 | ValNodePtr vnp = NULL; | ^~~ ingengraph.c:1826:22: warning: unused variable ‘gbp’ [-Wunused-variable] 1826 | GBBlockPtr gbp = NULL; | ^~~ ingengraph.c:1824:33: warning: variable ‘black’ set but not used [-Wunused-but-set-variable] 1824 | Uint1 orange[3], black[3]; | ^~~~~ ingengraph.c:1823:33: warning: variable ‘lime’ set but not used [-Wunused-but-set-variable] 1823 | Uint1 indigo[3], lime[3]; | ^~~~ ingengraph.c:1823:22: warning: variable ‘indigo’ set but not used [-Wunused-but-set-variable] 1823 | Uint1 indigo[3], lime[3]; | ^~~~~~ ingengraph.c: In function ‘Ing_AddGCRect’: ingengraph.c:1933:17: warning: variable ‘comp2’ set but not used [-Wunused-but-set-variable] 1933 | FloatHi comp2, comp_prev; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/ingengraph.h:63, from ingengraph.c:45: ingengraph.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ ingengraph.c:71:13: warning: ‘Ing_GetNamesZoomedVal’ declared ‘static’ but never defined [-Wunused-function] 71 | static void Ing_GetNamesZoomedVal(VieweR vNames,Int4Ptr from, Int4Ptr to, | ^~~~~~~~~~~~~~~~~~~~~ ingengraph.c:602:28: warning: ‘Ing_CollectFeatures1’ defined but not used [-Wunused-function] 602 | static Boolean LIBCALLBACK Ing_CollectFeatures1(SeqFeatPtr sfp, SeqMgrFeatContextPtr sfc) | ^~~~~~~~~~~~~~~~~~~~ ingengraph.c:583:24: warning: ‘Ing_SortByChoice’ defined but not used [-Wunused-function] 583 | static int LIBCALLBACK Ing_SortByChoice (VoidPtr ptr1, VoidPtr ptr2) | ^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingenext.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ingenext.c: In function ‘Ing_KeepTheBestAlignments’: ingenext.c:167:20: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable] 167 | AMAlignIndex2Ptr amaip = NULL; | ^~~~~ ingenext.c: In function ‘Ing_HandleQBlastResults’: ingenext.c:272:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 272 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ^~~~~~~ ingenext.c: In function ‘Ing_HandleResults’: ingenext.c:535:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 535 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ^~~~~~~ ingenext.c: In function ‘Ing_AccepttRNAargsProc’: ingenext.c:739:18: warning: unused variable ‘paramlist’ [-Wunused-variable] 739 | ValNodePtr paramlist = NULL; | ^~~~~~~~~ ingenext.c: In function ‘Ing_tRNAscanProc’: ingenext.c:915:22: warning: unused variable ‘moveMe’ [-Wunused-variable] 915 | ValNodePtr moveMe = NULL; | ^~~~~~ ingenext.c:906:22: warning: unused variable ‘first’ [-Wunused-variable] 906 | TexT first = NULL; | ^~~~~ ingenext.c:902:22: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 902 | ButtoN b; | ^ ingenext.c:896:17: warning: unused variable ‘args’ [-Wunused-variable] 896 | CharPtr args = NULL; | ^~~~ ingenext.c: In function ‘Ing_ReadtRNAConfigFile’: ingenext.c:1125:15: warning: variable ‘demomode’ set but not used [-Wunused-but-set-variable] 1125 | Boolean demomode = FALSE; | ^~~~~~~~ ingenext.c: In function ‘Ing_DoBlast2Seqs’: ingenext.c:1312:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable] 1312 | Boolean is_local, first_bsp=TRUE; | ^~~~~~~~ ingenext.c: In function ‘Ing_CreateDotMatrixForm’: ingenext.c:1834:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1834 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ^~~~~~~ ingenext.c: In function ‘Ing_RunSpidey’: ingenext.c:1994:20: warning: unused variable ‘sanp’ [-Wunused-variable] 1994 | SeqAnnotPtr sanp = NULL; | ^~~~ ingenext.c:1993:20: warning: unused variable ‘spidp_next’ [-Wunused-variable] 1993 | SPI_mRNAPtr spidp_next = NULL; | ^~~~~~~~~~ ingenext.c:1992:20: warning: unused variable ‘spidp_head’ [-Wunused-variable] 1992 | SPI_mRNAPtr spidp_head = NULL; | ^~~~~~~~~~ ingenext.c: In function ‘Ing_ReadmRNAs_ext’: ingenext.c:2025:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2025 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ^~~~~~~ ingenext.c: In function ‘Ing_DeleteInsertInGenomic’: ingenext.c:2522:16: warning: unused variable ‘newsegs’ [-Wunused-variable] 2522 | Int2 newsegs = 0, offset = 0; | ^~~~~~~ ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’: ingenext.c:2777:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2777 | if (!All) | ^~ ingenext.c:2781:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2781 | SeqLocReplace(msip, mmis, mmis, mstrand, gsip, gmis, gmis, gstrand); | ^~~~~~~~~~~~~ ingenext.c:2615:21: warning: unused variable ‘str’ [-Wunused-variable] 2615 | Char str[200] = {""}; | ^~~ ingenext.c:2612:22: warning: unused variable ‘amaip’ [-Wunused-variable] 2612 | AMAlignIndex2Ptr amaip = NULL; | ^~~~~ ingenext.c: In function ‘Ing_MismatchProc’: ingenext.c:3025:15: warning: unused variable ‘sip’ [-Wunused-variable] 3025 | SeqIdPtr sip = NULL; | ^~~ ingenext.c: In function ‘Ing_PrintSpideyReport’: ingenext.c:3471:27: warning: variable ‘gmis’ set but not used [-Wunused-but-set-variable] 3471 | Int4 mmis, gmis, miscount = 0; | ^~~~ ingenext.c: In function ‘Ing_PrintBlastReport’: ingenext.c:3853:18: warning: unused variable ‘more’ [-Wunused-variable] 3853 | Boolean more = FALSE; | ^~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ../include/ingenext.h:53, from ingenext.c:46: ../include/vibdefns.h:652:16: warning: variable ‘Nlm_DkGray’ set but not used [-Wunused-but-set-variable] 652 | #define DkGray Nlm_DkGray | ^~~~~~~~~~ ingenext.c:3850:18: note: in expansion of macro ‘DkGray’ 3850 | Uint1 DkGray[3]; | ^~~~~~ ingenext.c: In function ‘Ing_PopulateReport’: ingenext.c:4328:20: warning: unused variable ‘sip’ [-Wunused-variable] 4328 | SeqIdPtr sip=NULL; | ^~~ ingenext.c:4324:20: warning: unused variable ‘temp’ [-Wunused-variable] 4324 | CharPtr temp = NULL; | ^~~~ ingenext.c: In function ‘Ing_ResizeReportWindow’: ingenext.c:4484:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable] 4484 | BaR hsb; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/ingenwin.h:60, from ../include/ingenext.h:53, from ingenext.c:46: ingenext.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:135, from ../include/ingenwin.h:62, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function] 180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function] 181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function] 182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function] 199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function] 200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ingenext.c:130:13: warning: ‘querytimercount’ defined but not used [-Wunused-variable] 130 | static Int4 querytimercount = 0; | ^~~~~~~~~~~~~~~ ingenext.c:129:13: warning: ‘querytimerlimit’ defined but not used [-Wunused-variable] 129 | static Int4 querytimerlimit = 100; | ^~~~~~~~~~~~~~~ ingenext.c:59:28: warning: ‘Ing_BlastCallback’ defined but not used [-Wunused-function] 59 | static Boolean LIBCALLBACK Ing_BlastCallback (BlastResponse *brp, | ^~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from ../include/ingenwin.h:62, from ../include/ingenext.h:53, from ingenext.c:46: ../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable] 229 | static AsnModulePtr amp = ampx; | ^~~ ../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable] 228 | static AsnTypePtr at = atx; | ^~ ../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable] 227 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "blstspc.h23"; | ^~~~~~~~~~~ ingenext.c: In function ‘Ing_DoBlast2Seqs’: ingenext.c:1457:17: warning: ‘e_head’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1457 | e_tmp->next=e_head; | ~~~~~~~~~~~^~~~~~~ ingenext.c: In function ‘Ing_MismatchProc’: ingenext.c:3170:32: warning: ‘gstart’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3170 | gstart = start + (stop - gstart); | ~~~~~~^~~~~~~~~ ingenext.c:3206:23: warning: ‘mstart’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3206 | else if (mstart == R1 || mstart == R2 || mstart == R3){ | ~~~~~~~^~~~~ ingenext.c: In function ‘Ing_AccepttRNAargsProc’: ingenext.c:780:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 780 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c:794:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 794 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’: ingenext.c:2651:7: warning: ‘nmismatches’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2651 | for (j = 0; j < nmismatches; j++){ | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingenwin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ingenwin.c: In function ‘Ing_PopulateDetailedPage’: ingenwin.c:134:22: warning: unused variable ‘bSelected’ [-Wunused-variable] 134 | Boolean bSelected = FALSE; | ^~~~~~~~~ ingenwin.c: In function ‘Ing_DoRange’: ingenwin.c:394:22: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable] 394 | BioseqPtr bsp; | ^~~ ingenwin.c: In function ‘Ing_PopulateCpG’: ingenwin.c:576:19: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable] 576 | Int2 cxChar, nchars; | ^~~~~~ ingenwin.c: In function ‘Ing_ResizeCpGWindow’: ingenwin.c:642:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable] 642 | BaR hsb; | ^~~ ingenwin.c: In function ‘Ing_PopulateMotif’: ingenwin.c:718:26: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable] 718 | Int2 cxChar, nchars; | ^~~~~~ ingenwin.c:717:24: warning: variable ‘swidth’ set but not used [-Wunused-but-set-variable] 717 | Int4 slen, swidth; | ^~~~~~ ingenwin.c:717:18: warning: variable ‘slen’ set but not used [-Wunused-but-set-variable] 717 | Int4 slen, swidth; | ^~~~ ingenwin.c: In function ‘Ing_ResizeMotifWindow’: ingenwin.c:785:12: warning: unused variable ‘name’ [-Wunused-variable] 785 | CharPtr name = NULL; | ^~~~ ingenwin.c:783:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable] 783 | BaR hsb; | ^~~ ingenwin.c: In function ‘Ing_ShowComplexity’: ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1270 | while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){ | ^ ingenwin.c: In function ‘Ing_CreateNewFeature’: ingenwin.c:1301:22: warning: unused variable ‘rnatype’ [-Wunused-variable] 1301 | Uint1 rnatype=0; | ^~~~~~~ ingenwin.c: In function ‘Ing_GetAlignmentIntervals’: ingenwin.c:1418:20: warning: unused variable ‘master’ [-Wunused-variable] 1418 | SeqIdPtr master = NULL; | ^~~~~~ ingenwin.c: In function ‘Ing_OldGetAlignmentIntervals’: ingenwin.c:1494:20: warning: unused variable ‘master’ [-Wunused-variable] 1494 | SeqIdPtr master = NULL; | ^~~~~~ ingenwin.c: In function ‘Ing_OldMakeLocListFromSAP’: ingenwin.c:1613:26: warning: unused variable ‘slp2’ [-Wunused-variable] 1613 | SeqLocPtr slp1 = NULL, slp2 = NULL; | ^~~~ ingenwin.c:1613:13: warning: unused variable ‘slp1’ [-Wunused-variable] 1613 | SeqLocPtr slp1 = NULL, slp2 = NULL; | ^~~~ ingenwin.c: In function ‘Ing_OM_MsgFunc’: ingenwin.c:2380:15: warning: the address of ‘sfc’ will always evaluate as ‘true’ [-Waddress] 2380 | if (&sfc) | ^ ingenwin.c:2284:22: warning: unused variable ‘segID’ [-Wunused-variable] 2284 | Uint2 segID=0; | ^~~~~ ingenwin.c:2280:22: warning: unused variable ‘sep’ [-Wunused-variable] 2280 | SeqEntryPtr sep=NULL; | ^~~ ingenwin.c:2271:31: warning: unused variable ‘number’ [-Wunused-variable] 2271 | Int4 score=0, number=0; | ^~~~~~ ingenwin.c:2271:22: warning: unused variable ‘score’ [-Wunused-variable] 2271 | Int4 score=0, number=0; | ^~~~~ ingenwin.c:2270:34: warning: unused variable ‘n’ [-Wunused-variable] 2270 | Int4 s1=0, s2=0, n=1; | ^ ingenwin.c:2270:28: warning: unused variable ‘s2’ [-Wunused-variable] 2270 | Int4 s1=0, s2=0, n=1; | ^~ ingenwin.c:2270:22: warning: unused variable ‘s1’ [-Wunused-variable] 2270 | Int4 s1=0, s2=0, n=1; | ^~ ingenwin.c: In function ‘Ing_MoveCursor’: ingenwin.c:2631:9: warning: variable ‘grayClr2’ set but not used [-Wunused-but-set-variable] 2631 | Uint1 grayClr2[3]; | ^~~~~~~~ ingenwin.c: In function ‘Ing_FeatViewerClickProc’: ingenwin.c:2814:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2814 | if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){ | ^~~~~~ ingenwin.c:2804:14: warning: unused variable ‘slp’ [-Wunused-variable] 2804 | SeqLocPtr slp=NULL; | ^~~ ingenwin.c: In function ‘Ing_SequenceClickProc’: ingenwin.c:2908:22: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable] 2908 | SelStructPtr ssp=NULL; | ^~~ ingenwin.c: In function ‘Ing_ReadInBlastAsn’: ingenwin.c:3077:19: warning: unused variable ‘Report’ [-Wunused-variable] 3077 | IngReportPtr Report=NULL; | ^~~~~~ ingenwin.c:3075:19: warning: unused variable ‘sip’ [-Wunused-variable] 3075 | SeqIdPtr sip=NULL; | ^~~ ingenwin.c:3074:19: warning: unused variable ‘salp’ [-Wunused-variable] 3074 | SeqAlignPtr salp=NULL; | ^~~~ ingenwin.c:3073:19: warning: unused variable ‘n_sap’ [-Wunused-variable] 3073 | SeqAlignPtr n_sap=NULL; | ^~~~~ ingenwin.c: In function ‘Ing_ParseSeqIdFile’: ingenwin.c:3142:20: warning: unused variable ‘bsp’ [-Wunused-variable] 3142 | BioseqPtr bsp=NULL; | ^~~ ingenwin.c: In function ‘Ing_ReadInFeatureTable’: ingenwin.c:3194:20: warning: variable ‘sanp’ set but not used [-Wunused-but-set-variable] 3194 | SeqAnnotPtr sanp; | ^~~~ ingenwin.c: In function ‘Ing_AssembleGenscanInfo’: ingenwin.c:3258:17: warning: unused variable ‘slp’ [-Wunused-variable] 3258 | SeqLocPtr slp=NULL; | ^~~ ingenwin.c: In function ‘Ing_ReadInGenscan’: ingenwin.c:3300:33: warning: unused variable ‘str’ [-Wunused-variable] 3300 | CharPtr letter=NULL, str=NULL; | ^~~ ingenwin.c:3300:20: warning: unused variable ‘letter’ [-Wunused-variable] 3300 | CharPtr letter=NULL, str=NULL; | ^~~~~~ ingenwin.c:3298:33: warning: unused variable ‘first_pass’ [-Wunused-variable] 3298 | Boolean found=FALSE, first_pass=FALSE; | ^~~~~~~~~~ ingenwin.c: In function ‘Ing_AssembleTabDelimited’: ingenwin.c:3519:17: warning: variable ‘score’ set but not used [-Wunused-but-set-variable] 3519 | Int4 score; | ^~~~~ ingenwin.c:3516:17: warning: unused variable ‘tmp’ [-Wunused-variable] 3516 | CharPtr tmp=NULL; | ^~~ ingenwin.c: In function ‘Ing_ReadInTabDelimited’: ingenwin.c:3659:40: warning: variable ‘label_str’ set but not used [-Wunused-but-set-variable] 3659 | CharPtr tmp=NULL, str=NULL, label_str=NULL; | ^~~~~~~~~ ingenwin.c:3659:20: warning: unused variable ‘tmp’ [-Wunused-variable] 3659 | CharPtr tmp=NULL, str=NULL, label_str=NULL; | ^~~ ingenwin.c:3653:20: warning: unused variable ‘lip_tmp’ [-Wunused-variable] 3653 | IngInfoPtr lip_tmp=NULL; | ^~~~~~~ ingenwin.c:3650:20: warning: unused variable ‘letter’ [-Wunused-variable] 3650 | CharPtr letter=NULL; | ^~~~~~ ingenwin.c: In function ‘Ing_FileOpenSpecial’: ingenwin.c:3984:16: warning: unused variable ‘Report’ [-Wunused-variable] 3984 | IngReportPtr Report=NULL; | ^~~~~~ ingenwin.c: In function ‘Ing_FileOpenMain’: ingenwin.c:4078:21: warning: unused variable ‘sep_orig’ [-Wunused-variable] 4078 | SeqEntryPtr sep_orig=NULL, sep=NULL; | ^~~~~~~~ ingenwin.c: In function ‘Ing_ResizeMainWindow’: ingenwin.c:4187:25: warning: variable ‘InfoHeight’ set but not used [-Wunused-but-set-variable] 4187 | Int2 RulerHeight, InfoHeight; | ^~~~~~~~~~ ingenwin.c: In function ‘Ing_OpenFromFileORNetwork’: ingenwin.c:4491:25: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 4491 | ButtoN b,b2; | ^~ ingenwin.c: In function ‘Ing_EditFeature’: ingenwin.c:4640:22: warning: variable ‘igvp’ set but not used [-Wunused-but-set-variable] 4640 | IngGenomeViewerPtr igvp=NULL; | ^~~~ ingenwin.c: In function ‘Ing_MarkSeqAnnot’: ingenwin.c:4713:16: warning: unused variable ‘bNoParent’ [-Wunused-variable] 4713 | Boolean bNoParent = FALSE; | ^~~~~~~~~ ingenwin.c: In function ‘Ing_PropagateClickProc’: ingenwin.c:5064:22: warning: unused variable ‘primID’ [-Wunused-variable] 5064 | Uint2 primID=0; | ^~~~~~ ingenwin.c:5063:22: warning: unused variable ‘itemtype’ [-Wunused-variable] 5063 | Uint2 itemtype=0; | ^~~~~~~~ ingenwin.c:5062:22: warning: unused variable ‘itemID’ [-Wunused-variable] 5062 | Uint4 itemID=0; | ^~~~~~ ingenwin.c:5061:22: warning: unused variable ‘entityID’ [-Wunused-variable] 5061 | Uint2 entityID=0; | ^~~~~~~~ ingenwin.c:5060:22: warning: unused variable ‘ssp’ [-Wunused-variable] 5060 | SelStructPtr ssp=NULL; | ^~~ ingenwin.c:5059:22: warning: unused variable ‘igvp’ [-Wunused-variable] 5059 | IngGenomeViewerPtr igvp=NULL; | ^~~~ ingenwin.c: In function ‘Ing_PrintCompProteins’: ingenwin.c:5146:32: warning: unused variable ‘str2’ [-Wunused-variable] 5146 | Char str1[200] = {""}, str2[10] = {""}; | ^~~~ ingenwin.c: In function ‘Ing_PropagateReport’: ingenwin.c:5282:14: warning: variable ‘ARROW’ set but not used [-Wunused-but-set-variable] 5282 | Uint1 ARROW=NO_ARROW; | ^~~~~ ingenwin.c:5279:14: warning: unused variable ‘stringwidth’ [-Wunused-variable] 5279 | Int4 stringwidth = 0; | ^~~~~~~~~~~ ingenwin.c:5277:14: warning: unused variable ‘left’ [-Wunused-variable] 5277 | Int4 left = 10; | ^~~~ ingenwin.c:5276:14: warning: variable ‘prim’ set but not used [-Wunused-but-set-variable] 5276 | PrimitivE prim; | ^~~~ ingenwin.c: In function ‘Ing_DoPropagate’: ingenwin.c:5596:14: warning: unused variable ‘strErr’ [-Wunused-variable] 5596 | Char strErr[50]={""}; | ^~~~~~ ingenwin.c: In function ‘Ing_GetFromNetwork’: ingenwin.c:7518:11: warning: unused variable ‘szAppName’ [-Wunused-variable] 7518 | Char szAppName [10]={"Ingenue"}; | ^~~~~~~~~ ingenwin.c: In function ‘Ing_SetupMainWindow’: ingenwin.c:7761:16: warning: unused variable ‘szAppName’ [-Wunused-variable] 7761 | Char szAppName [10]={"Ingenue"}; | ^~~~~~~~~ ingenwin.c:7760:48: warning: unused variable ‘str2’ [-Wunused-variable] 7760 | Char title[100]={""}, str1[20]={""}, str2[20]={""}; | ^~~~ ingenwin.c:7760:33: warning: unused variable ‘str1’ [-Wunused-variable] 7760 | Char title[100]={""}, str1[20]={""}, str2[20]={""}; | ^~~~ ingenwin.c:7760:16: warning: unused variable ‘title’ [-Wunused-variable] 7760 | Char title[100]={""}, str1[20]={""}, str2[20]={""}; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/ingenwin.h:60, from ingenwin.c:45: ingenwin.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:135, from ../include/ingenwin.h:62, from ingenwin.c:45: ../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function] 180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function] 181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function] 182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function] 199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function] 200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ingenwin.c:7552:13: warning: ‘Ing_ItemtoNetwork’ defined but not used [-Wunused-function] 7552 | static void Ing_ItemtoNetwork(IteM i){ | ^~~~~~~~~~~~~~~~~ ingenwin.c:6717:13: warning: ‘Ing_BspListProc’ defined but not used [-Wunused-function] 6717 | static void Ing_BspListProc(IteM i) | ^~~~~~~~~~~~~~~ ingenwin.c:5535:16: warning: ‘Ing_KeywordAlreadyInList’ defined but not used [-Wunused-function] 5535 | static Boolean Ing_KeywordAlreadyInList (ValNodePtr head, CharPtr kwd) | ^~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:1869:16: warning: ‘Ing_DeSelectPrim’ defined but not used [-Wunused-function] 1869 | static Boolean Ing_DeSelectPrim (SegmenT seg, PrimitivE prim, Uint2 segID, Uint2 primID, Uint2 primCt, VoidPtr userdata) | ^~~~~~~~~~~~~~~~ ingenwin.c:1610:18: warning: ‘Ing_OldMakeLocListFromSAP’ defined but not used [-Wunused-function] 1610 | static SeqLocPtr Ing_OldMakeLocListFromSAP(SeqAlignPtr sap) | ^~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:1487:23: warning: ‘Ing_OldGetAlignmentIntervals’ defined but not used [-Wunused-function] 1487 | static IngIvalInfoPtr Ing_OldGetAlignmentIntervals (SeqAlignPtr sap, Int4 from_row, Int4 to_row, Int4 from, Int4 to, Uint1 strand) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from ../include/ingenwin.h:62, from ingenwin.c:45: ../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable] 229 | static AsnModulePtr amp = ampx; | ^~~ ../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable] 228 | static AsnTypePtr at = atx; | ^~ ../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable] 227 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "blstspc.h23"; | ^~~~~~~~~~~ ingenwin.c: In function ‘Ing_ReplaceMismatchedProc’: ingenwin.c:4902:3: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4902 | Ing_ReplaceAllMismatchedInLocation(igvp, rmp->sap, start, stop, GetStatus(rmp->all), GetStatus(rmp->gaps), GetStatus(rmp->inserts)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:4902:3: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized] ingenwin.c: In function ‘Ing_PropagateReport’: ingenwin.c:5353:17: warning: ‘%s’ directive writing up to 299 bytes into a region of size 255 [-Wformat-overflow=] 5353 | sprintf(str, "%s", pfp->name); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 300 bytes into a destination of size 255 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:5229:37: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5229 | for (i = last_pos; i <= exit; i += nchars_row){ | ~~^~~~~~~~~~~~~ ingenwin.c:5137:17: note: ‘j’ was declared here 5137 | Int4 i, j, k, row; | ^ ingenwin.c: In function ‘Ing_DoPropagate’: ingenwin.c:5625:26: warning: ‘ already exists. Do you stil...’ directive writing 51 bytes into a region of size between 1 and 300 [-Wformat-overflow=] 5625 | sprintf (str_buf, "%s already exists. Do you still want to propagate it?", pfp->name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 52 and 351 bytes into a destination of size 300 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c: In function ‘Ing_FileOpenSpecial’: ingenwin.c:3290:13: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3290 | slp_list=Ing_MakeSlpList(NULL, n/2, ivals, strand, igvp->bsp->id); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:3255:17: note: ‘strand’ was declared here 3255 | Uint1 strand; | ^~~~~~ ingenwin.c: In function ‘Ing_KozakProc’: ingenwin.c:1048:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1048 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:1006:22: note: ‘ReportW’ was declared here 1006 | WindoW ReportW; | ^~~~~~~ ingenwin.c: In function ‘Ing_SignalPeptideProc’: ingenwin.c:1099:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1099 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:1057:22: note: ‘ReportW’ was declared here 1057 | WindoW ReportW; | ^~~~~~~ ingenwin.c: In function ‘Ing_RepeatsProc’: ingenwin.c:997:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 997 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:955:22: note: ‘ReportW’ was declared here 955 | WindoW ReportW; | ^~~~~~~ ingenwin.c: In function ‘Ing_PolyAProc’: ingenwin.c:946:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 946 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:904:22: note: ‘ReportW’ was declared here 904 | WindoW ReportW; | ^~~~~~~ ingenwin.c: In function ‘Ing_CpGProc’: ingenwin.c:895:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized] 895 | if (ans == ANS_NO) | ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized] 476 | #define Select Nlm_Select | ^~~~~~~~~~ ingenwin.c:857:22: note: ‘ReportW’ was declared here 857 | WindoW ReportW; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF macrodlg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from macrodlg.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ macrodlg.c: In function ‘ExistingTextDialog’: macrodlg.c:1959:22: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable] 1959 | PrompT ppt; | ^~~ macrodlg.c: In function ‘EndDistanceToDialog’: macrodlg.c:3076:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3076 | sprintf (buf, "%d", v->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:3082:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3082 | sprintf (buf, "%d", v->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:3088:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 3088 | sprintf (buf, "%d", v->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c: In function ‘SourceQualChoiceDialog’: macrodlg.c:3757:48: warning: variable ‘b4’ set but not used [-Wunused-but-set-variable] 3757 | ButtoN b1, b2, b3 = NULL, b4 = NULL; | ^~ macrodlg.c:3757:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable] 3757 | ButtoN b1, b2, b3 = NULL, b4 = NULL; | ^~ macrodlg.c:3757:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 3757 | ButtoN b1, b2, b3 = NULL, b4 = NULL; | ^~ macrodlg.c:3757:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable] 3757 | ButtoN b1, b2, b3 = NULL, b4 = NULL; | ^~ macrodlg.c: In function ‘SourceConstraintDialog’: macrodlg.c:3995:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable] 3995 | ButtoN b1, b2, b3; | ^~ macrodlg.c:3995:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 3995 | ButtoN b1, b2, b3; | ^~ macrodlg.c:3995:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable] 3995 | ButtoN b1, b2, b3; | ^~ macrodlg.c: In function ‘CDSGeneProtQualConstraintDialog’: macrodlg.c:4309:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable] 4309 | ButtoN b1, b2, b3; | ^~ macrodlg.c:4309:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable] 4309 | ButtoN b1, b2, b3; | ^~ macrodlg.c:4309:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable] 4309 | ButtoN b1, b2, b3; | ^~ macrodlg.c: In function ‘QuantityConstraintToDialog’: macrodlg.c:7368:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 7368 | sprintf (buf, "%d", vnp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:7373:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 7373 | sprintf (buf, "%d", vnp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:7378:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 7378 | sprintf (buf, "%d", vnp->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c: In function ‘TestApplyActionDialog’: macrodlg.c:12965:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable] 12965 | Int2 field_type = 0; | ^~~~~~~~~~ macrodlg.c: In function ‘TestEditActionDialog’: macrodlg.c:13170:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable] 13170 | Int2 field_type = 0; | ^~~~~~~~~~ macrodlg.c: In function ‘TestRemoveOutsideActionDialog’: macrodlg.c:13328:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable] 13328 | Int2 field_type = 0; | ^~~~~~~~~~ macrodlg.c: In function ‘ApplyFeatureActionToDialog’: macrodlg.c:15186:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 15186 | sprintf (num, "%d^", action->location->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:15188:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 15188 | sprintf (num, "%d", action->location->data.intvalue + 1); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c: In function ‘AddMacroActions’: macrodlg.c:20523:25: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable] 20523 | Boolean rval = FALSE; | ^~~~ macrodlg.c: In function ‘PointerToSampleDialog’: macrodlg.c:20659:19: warning: variable ‘max_char_per_line’ set but not used [-Wunused-but-set-variable] 20659 | Int4 max_char_per_line; | ^~~~~~~~~~~~~~~~~ macrodlg.c: In function ‘SampleDialogCopy’: macrodlg.c:20779:53: warning: variable ‘last_col’ set but not used [-Wunused-but-set-variable] 20779 | Int2 start_col = 0, end_col = 0, first_col, last_col; | ^~~~~~~~ macrodlg.c:20779:42: warning: variable ‘first_col’ set but not used [-Wunused-but-set-variable] 20779 | Int2 start_col = 0, end_col = 0, first_col, last_col; | ^~~~~~~~~ macrodlg.c: In function ‘SingleMacroAcceptButton’: macrodlg.c:22071:33: warning: variable ‘num_features’ set but not used [-Wunused-but-set-variable] 22071 | Int4 num_fields, num_features; | ^~~~~~~~~~~~ macrodlg.c:22071:21: warning: variable ‘num_fields’ set but not used [-Wunused-but-set-variable] 22071 | Int4 num_fields, num_features; | ^~~~~~~~~~ macrodlg.c: In function ‘LaunchMacroTemplateEditor’: macrodlg.c:23785:23: warning: variable ‘bfp’ set but not used [-Wunused-but-set-variable] 23785 | BaseFormPtr bfp; | ^~~ macrodlg.c: In function ‘SearchFuncToDialog’: macrodlg.c:25755:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 25755 | sprintf (buf, "%d", func->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld macrodlg.c:25776:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 25776 | sprintf (buf, "%d", func->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld At top level: macrodlg.c:20095:13: warning: ‘ChangeMacroActionPopup’ defined but not used [-Wunused-function] 20095 | static void ChangeMacroActionPopup (LisT t) | ^~~~~~~~~~~~~~~~~~~~~~ macrodlg.c:20038:13: warning: ‘GetPopupChoiceForActionChoice’ defined but not used [-Wunused-function] 20038 | static Int2 GetPopupChoiceForActionChoice (Uint1 action_choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macrodlg.c:19715:13: warning: ‘GetCategoryForActionChoice’ defined but not used [-Wunused-function] 19715 | static Int2 GetCategoryForActionChoice (Uint1 action_choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ macrodlg.c:19698:14: warning: ‘GetActionChoiceForCategoryPopupChoice’ defined but not used [-Wunused-function] 19698 | static Uint1 GetActionChoiceForCategoryPopupChoice (Int2 category, Int2 popup_choice) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macrodlg.c: In function ‘ActionToSingleMacroActionForm’: macrodlg.c:22273:30: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 22273 | Show (frm->action_dlgs[val - 1]); | ~~~~^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF biosrc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/biosrc.h:48, from biosrc.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ biosrc.c: In function ‘CreateSimpleBioSourceDialog’: biosrc.c:2455:18: warning: variable ‘indexerVersion’ set but not used [-Wunused-but-set-variable] 2455 | Boolean indexerVersion; | ^~~~~~~~~~~~~~ biosrc.c: In function ‘CreateBioSourceDialog’: biosrc.c:3615:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] 3615 | PrompT y; | ^ At top level: biosrc.c:3291:26: warning: ‘EnumListFromQualNameAssoc’ defined but not used [-Wunused-function] 3291 | static EnumFieldAssocPtr EnumListFromQualNameAssoc (Nlm_QualNameAssocPtr qp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:3100:16: warning: ‘SubsourceDialogToSubSourcePtr’ defined but not used [-Wunused-function] 3100 | static Pointer SubsourceDialogToSubSourcePtr (DialoG d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:2677:13: warning: ‘SubSourcePtrToSubsourceDialog’ defined but not used [-Wunused-function] 2677 | static void SubSourcePtrToSubsourceDialog (DialoG d, Pointer data) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:2617:16: warning: ‘OrgmodDialogToOrgModPtr’ defined but not used [-Wunused-function] 2617 | static Pointer OrgmodDialogToOrgModPtr (DialoG d) | ^~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:2568:13: warning: ‘OrgModPtrToOrgmodDialog’ defined but not used [-Wunused-function] 2568 | static void OrgModPtrToOrgmodDialog (DialoG d, Pointer data) | ^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdrgn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/cdrgn.h:89, from cdrgn.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cdrgn.c: In function ‘SetBestProteinFeature’: cdrgn.c:1003:21: warning: unused variable ‘prp’ [-Wunused-variable] 1003 | ProtRefPtr prp; | ^~~ cdrgn.c: In function ‘CdRegionPtrToForm’: cdrgn.c:1050:19: warning: unused variable ‘vnp’ [-Wunused-variable] 1050 | ValNodePtr vnp; | ^~~ cdrgn.c: In function ‘ProductToSeqLocPtr’: cdrgn.c:1293:19: warning: variable ‘rfp’ set but not used [-Wunused-but-set-variable] 1293 | RnaFormPtr rfp = NULL; | ^~~ cdrgn.c: In function ‘CreateCodeBreakAlist’: cdrgn.c:1926:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 1926 | Uint1 first; | ^~~~~ cdrgn.c: In function ‘CodeBreakPtrToCodeBreakDialog’: cdrgn.c:1977:19: warning: variable ‘aa’ set but not used [-Wunused-but-set-variable] 1977 | Uint1 aa; | ^~ cdrgn.c: In function ‘PopulateAAPopup’: cdrgn.c:7041:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 7041 | Uint1 first; | ^~~~~ cdrgn.c: In function ‘RnaRefPtrToForm’: cdrgn.c:7557:17: warning: unused variable ‘is_iMet’ [-Wunused-variable] 7557 | Boolean is_iMet = FALSE; | ^~~~~~~ cdrgn.c:7556:17: warning: unused variable ‘is_fMet’ [-Wunused-variable] 7556 | Boolean is_fMet = FALSE; | ^~~~~~~ At top level: cdrgn.c:6851:13: warning: ‘ConvertRnaRefNameToProductQual’ defined but not used [-Wunused-function] 6851 | static void ConvertRnaRefNameToProductQual (SeqFeatPtr sfp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdrgn.c:6789:13: warning: ‘RemoveQualByName’ defined but not used [-Wunused-function] 6789 | static void RemoveQualByName (SeqFeatPtr sfp, CharPtr qual_name) | ^~~~~~~~~~~~~~~~ cdrgn.c:6770:18: warning: ‘FindOrAddQual’ defined but not used [-Wunused-function] 6770 | static GBQualPtr FindOrAddQual (SeqFeatPtr sfp, CharPtr qual_name) | ^~~~~~~~~~~~~ cdrgn.c:6323:15: warning: ‘CreateMrnaUserObjectDialog’ defined but not used [-Wunused-function] 6323 | static DialoG CreateMrnaUserObjectDialog (GrouP h, CharPtr label, SeqEntryPtr sep, BaseFormPtr bfp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cdrgn.c:6246:14: warning: ‘check_rna_type’ defined but not used [-Wunused-function] 6246 | static Uint1 check_rna_type (Uint1 type) | ^~~~~~~~~~~~~~ cdrgn.c:3183:13: warning: ‘SetComment’ defined but not used [-Wunused-function] 3183 | static void SetComment (CharPtr new_comment, WindoW w) | ^~~~~~~~~~ cdrgn.c:2149:13: warning: ‘AccessionToGi’ defined but not used [-Wunused-function] 2149 | static Int4 AccessionToGi (CharPtr string) | ^~~~~~~~~~~~~ cdrgn.c:961:13: warning: ‘FormToProtRef’ defined but not used [-Wunused-function] 961 | static void FormToProtRef(CdRgnFormPtr cfp, ProtRefPtr prp) | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF import.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/import.h:48, from import.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ import.c:3776:22: warning: ‘kDoNotEditTitle’ initialized and declared ‘extern’ 3776 | extern const CharPtr kDoNotEditTitle = "You are manually editing a title. If you continue, the title will not be automatically updated if the taxonomy information changes. Are you sure you want to do this? It is a very bad idea."; | ^~~~~~~~~~~~~~~ import.c: In function ‘ExpandSecondaries’: import.c:3394:30: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=] 3394 | sprintf (numbers, "%*ld", digits, (long) idx); | ^~~~ import.c:3394:29: note: directive argument in the range [1, 2147483647] 3394 | sprintf (numbers, "%*ld", digits, (long) idx); | ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/import.h:48, from import.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pubdesc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/pubdesc.h:48, from pubdesc.c:44: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pubdesc.c: In function ‘MakeReplaceAuthorsForm’: pubdesc.c:4303:24: warning: variable ‘pepp’ set but not used [-Wunused-but-set-variable] 4303 | PubdescEditProcsPtr pepp; | ^~~~ pubdesc.c: In function ‘DisplayDocSum’: pubdesc.c:4865:9: warning: variable ‘lineheight’ set but not used [-Wunused-but-set-variable] 4865 | Int2 lineheight; | ^~~~~~~~~~ At top level: pubdesc.c:5377:13: warning: ‘Quit’ defined but not used [-Wunused-function] 5377 | static void Quit (ButtoN b) | ^~~~ pubdesc.c:5113:14: warning: ‘AddAll’ defined but not used [-Wunused-function] 5113 | static void AddAll(Entrez2RequestPtr e2rp, CharPtr term, Boolean is_1st) | ^~~~~~ pubdesc.c: In function ‘SendQuery’: pubdesc.c:5096:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 5096 | sprintf (year_buf, "%d", year - 1); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/pubdesc.h:48, from pubdesc.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pubdesc.c:5099:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 5099 | sprintf (year_buf, "%d", year); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/pubdesc.h:48, from pubdesc.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pubdesc.c:5102:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 5102 | sprintf (year_buf, "%d", year + 1); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/pubdesc.h:48, from pubdesc.c:44: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsub.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/seqsub.h:58, from seqsub.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqsub.c: In function ‘SeqSubmitFromTemplateEditor’: seqsub.c:3250:20: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable] 3250 | ObjMgrDataPtr omdp; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mapgene.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from mapgene.c:2: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mapgene.c: In function ‘load_new_align’: mapgene.c:79:17: warning: variable ‘match_slp’ set but not used [-Wunused-but-set-variable] 79 | SeqLocPtr slp, match_slp, t_slp; | ^~~~~~~~~ mapgene.c: In function ‘figure_loc_by_position’: mapgene.c:1039:20: warning: variable ‘center’ set but not used [-Wunused-but-set-variable] 1039 | Int4 start, stop, center; | ^~~~~~ mapgene.c: In function ‘cvt_loc_for_single_gene’: mapgene.c:1958:29: warning: variable ‘p_align_offset’ set but not used [-Wunused-but-set-variable] 1958 | Int4 offset, align_offset, p_align_offset; | ^~~~~~~~~~~~~~ mapgene.c:1957:7: warning: unused variable ‘shift’ [-Wunused-variable] 1957 | Int4 shift = 0; | ^~~~~ mapgene.c: In function ‘print_header_for_center’: mapgene.c:2693:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable] 2693 | CharPtr link; | ^~~~ mapgene.c: In function ‘PrintGeneticMarkerForOneMap’: mapgene.c:3635:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable] 3635 | CharPtr link; | ^~~~ At top level: mapgene.c:3207:16: warning: ‘convert_center_name_to_gifname’ defined but not used [-Wunused-function] 3207 | static Boolean convert_center_name_to_gifname (CharPtr center_name, CharPtr gif_name) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mapgene.c:1788:13: warning: ‘adjust_slp_list’ defined but not used [-Wunused-function] 1788 | static void adjust_slp_list(ValNodePtr slp_list) | ^~~~~~~~~~~~~~~ mapgene.c:1748:16: warning: ‘merge_slp_list’ defined but not used [-Wunused-function] 1748 | static Boolean merge_slp_list(ValNodePtr PNTR gene_slp_list, ValNodePtr slp_list) | ^~~~~~~~~~~~~~ mapgene.c:1280:13: warning: ‘change_anchor_to_front’ defined but not used [-Wunused-function] 1280 | static void change_anchor_to_front(ValNodePtr msp_list, SeqIdPtr anchor_id) | ^~~~~~~~~~~~~~~~~~~~~~ mapgene.c:200:13: warning: ‘get_center_pointer’ defined but not used [-Wunused-function] 200 | static Int4 get_center_pointer(SeqLocPtr slp) | ^~~~~~~~~~~~~~~~~~ mapgene.c:27:13: warning: ‘print_this_id’ defined but not used [-Wunused-function] 27 | static void print_this_id (SeqIdPtr sip) | ^~~~~~~~~~~~~ mapgene.c: In function ‘PrintHTMLContigAlign.constprop’: mapgene.c:2798:30: warning: ‘%s’ directive writing up to 30 bytes into a region of size 25 [-Wformat-overflow=] 2798 | sprintf(link_name, "CONTIG%s", alpha_name); | ^~ ~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from mapgene.c:2: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 37 bytes into a destination of size 31 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mapgene.c: In function ‘PrintContigForOneMap’: mapgene.c:3126:2: warning: ‘yac_num’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3126 | for(i = 0; i>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prtgene.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/tofile.h:66, from ../include/prtgene.h:3, from prtgene.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ prtgene.c: In function ‘print_sfp_ext’: prtgene.c:108:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 108 | if(ufp->choice == 2) /*integer */ | ^~ prtgene.c:110:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 110 | print_store_buf(temp, buf, buf_size, &len, fp); | ^~~~~~~~~~~~~~~ prtgene.c: In function ‘print_store_for_html’: prtgene.c:749:7: warning: variable ‘white_sp’ set but not used [-Wunused-but-set-variable] 749 | Char white_sp; | ^~~~~~~~ prtgene.c: In function ‘PrintSequenceToFile.isra’: prtgene.c:950:28: warning: ‘ (bp) on the genome’ directive writing 19 bytes into a region of size between 16 and 96 [-Wformat-overflow=] 950 | sprintf(temp, ": %s - %s (bp) on the genome", temp_1, temp_2); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/tofile.h:66, from ../include/prtgene.h:3, from prtgene.c:1: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 105 bytes into a destination of size 101 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libncbidesk.a ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbidesk.a ../lib ranlib ../lib/libncbidesk.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvclick.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvclick.c:248: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvclick.c: In function ‘DDV_SendBSPSelectMsg_OLD’: ddvclick.c:979:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable] 979 | Boolean bDeselectAll=TRUE; | ^~~~~~~~~~~~ ddvclick.c: In function ‘DDV_SendBSPSelectMsg’: ddvclick.c:1090:18: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable] 1090 | Boolean bDeselectAll=TRUE; | ^~~~~~~~~~~~ ddvclick.c: In function ‘DDV_DragProc’: ddvclick.c:2013:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable] 2013 | ParaGPtr cur_pgp=NULL; | ^~~~~~~ ddvclick.c: In function ‘DDV_HoldProc’: ddvclick.c:2494:13: warning: unused variable ‘Scroll’ [-Wunused-variable] 2494 | Boolean Scroll=FALSE; | ^~~~~~ ddvclick.c:2490:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable] 2490 | ParaGPtr cur_pgp=NULL; | ^~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvclick.c:252: ddvclick.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvclick.c:252: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvclick.c:252: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvclick.c:252: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ddvclick.c:1823:13: warning: ‘EraseOutline’ defined but not used [-Wunused-function] 1823 | static void EraseOutline(PaneL p) { | ^~~~~~~~~~~~ ddvclick.c:1811:16: warning: ‘RectanglesAreSame’ defined but not used [-Wunused-function] 1811 | static Boolean RectanglesAreSame(RecT rc1, RecT rc2) { | ^~~~~~~~~~~~~~~~~ ddvclick.c:970:13: warning: ‘DDV_SendBSPSelectMsg_OLD’ defined but not used [-Wunused-function] 970 | static void DDV_SendBSPSelectMsg_OLD(DdvMainPtr dmp,Int4 bsp_coord,Int4 SeqAlign_coord, | ^~~~~~~~~~~~~~~~~~~~~~~~ ddvclick.c:611:13: warning: ‘DDV_GetSeqAlignCoordGivenCol’ defined but not used [-Wunused-function] 611 | static Int4 DDV_GetSeqAlignCoordGivenCol(DdvMainPtr dmp, Int4 Disp_coord) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvclick.c: In function ‘DDV_GetSeqNameGivenRow’: ddvclick.c:956:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 956 | if (!sip) | ^ ddvclick.c: In function ‘DDV_ReleaseProc’: ddvclick.c:1127:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1127 | slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvclick.c:1091:18: note: ‘pgp’ was declared here 1091 | ParaGPtr pgp; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvgraph.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvgraph.c:210: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvgraph.c: In function ‘DDV_DrawSequence’: ddvgraph.c:701:31: warning: unused variable ‘pos’ [-Wunused-variable] 701 | Int2 decal=1,i,x,y,pos=0; | ^~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ddvgraph.c:215: ddvgraph.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ddvgraph.c:215: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ddvgraph.c:215: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ddvgraph.c:215: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvopen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvopen.c:372: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvopen.c: In function ‘DDV_GetAndCheckSeqAlign’: ddvopen.c:1739:8: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable] 1739 | Uint2 nRet=DVV_MSG_M_OK; | ^~~~ ddvopen.c: In function ‘DDV_FOpenAcceptProc’: ddvopen.c:1932:11: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable] 1932 | Uint2 nRet=DVV_MSG_M_OK,The_entityID; | ^~~~ ddvopen.c: In function ‘DDV_NetOpen_okProc’: ddvopen.c:2141:8: warning: variable ‘AccessType’ set but not used [-Wunused-but-set-variable] 2141 | Int2 AccessType,procval; | ^~~~~~~~~~ ddvopen.c: In function ‘DDV_StartMainWin_Slave’: ddvopen.c:2411:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 2411 | else | ^~~~ ddvopen.c:2417:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 2417 | if (!w) return(NULL); | ^~ ddvopen.c: In function ‘DDV_ImportBioseqDlg’: ddvopen.c:2819:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 2819 | ButtoN b; | ^ ddvopen.c: In function ‘DDV_HideDlg’: ddvopen.c:3135:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 3135 | ButtoN b; | ^ In file included from ../include/sqnutils.h:51, from ../include/udviewer.h:219, from ddvopen.c:376: ddvopen.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/udviewer.h:228, from ddvopen.c:376: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ddvopen.c:377: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ddvopen.c:377: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ddvopen.c:377: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ddvopen.c:377: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ddvopen.c:2111:16: warning: ‘DDV_IsInt’ defined but not used [-Wunused-function] 2111 | static Boolean DDV_IsInt(CharPtr szAccess) | ^~~~~~~~~ ddvopen.c:1285:13: warning: ‘DDV_NoConvert’ defined but not used [-Wunused-function] 1285 | static void DDV_NoConvert(ButtoN g) { | ^~~~~~~~~~~~~ ddvopen.c:1272:13: warning: ‘DDV_Convert’ defined but not used [-Wunused-function] 1272 | static void DDV_Convert(ButtoN g) { | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvpanel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvpanel.c:389: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvpanel.c: In function ‘DDV_CreateViewerPanel’: ddvpanel.c:1177:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable] 1177 | Int2 cxChar,cyChar; | ^~~~~~ ddvpanel.c: In function ‘DDV_DispStyles_OkProc’: ddvpanel.c:1543:21: warning: unused variable ‘szBuf’ [-Wunused-variable] 1543 | Char szBuf[15]={""}; | ^~~~~ ddvpanel.c: In function ‘DDV_ExportTexte’: ddvpanel.c:2799:40: warning: variable ‘browse’ set but not used [-Wunused-but-set-variable] 2799 | ButtoN chk2,chk3,chk4,chk5,chk6,browse,ok; | ^~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvpanel.c:392: ddvpanel.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvpanel.c:392: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvpanel.c:392: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ddvopen.h:140, from ../include/ddvmain.h:202, from ../include/ddvpanel.h:150, from ddvpanel.c:392: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3377:13: warning: ‘write_annot’ defined but not used [-Wunused-function] 3377 | static void write_annot(SeqAlignPtr align) | ^~~~~~~~~~~ ddvpanel.c:3296:13: warning: ‘DDV_MoveRightBoundaryRight’ defined but not used [-Wunused-function] 3296 | static void DDV_MoveRightBoundaryRight(IteM i) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3290:13: warning: ‘DDV_MoveRightBoundaryLeft’ defined but not used [-Wunused-function] 3290 | static void DDV_MoveRightBoundaryLeft(IteM i) | ^~~~~~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3284:13: warning: ‘DDV_MoveLeftBoundaryRight’ defined but not used [-Wunused-function] 3284 | static void DDV_MoveLeftBoundaryRight(IteM i) | ^~~~~~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3278:13: warning: ‘DDV_MoveLeftBoundaryLeft’ defined but not used [-Wunused-function] 3278 | static void DDV_MoveLeftBoundaryLeft(IteM i) | ^~~~~~~~~~~~~~~~~~~~~~~~ ddvpanel.c:3272:13: warning: ‘DDV_MoveRowRight’ defined but not used [-Wunused-function] 3272 | static void DDV_MoveRowRight(IteM i) | ^~~~~~~~~~~~~~~~ ddvpanel.c:3266:13: warning: ‘DDV_MoveRowLeft’ defined but not used [-Wunused-function] 3266 | static void DDV_MoveRowLeft(IteM i) | ^~~~~~~~~~~~~~~ ddvpanel.c:3024:13: warning: ‘DDV_DeleteRow’ defined but not used [-Wunused-function] 3024 | static void DDV_DeleteRow(IteM i) | ^~~~~~~~~~~~~ ddvpanel.c: In function ‘DDV_SortPGPLineNum’: ddvpanel.c:2441:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2441 | n+=pgp->nLines; | ~~~^~~~~~~~ rm -f libddvlib.a ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libddvlib.a ../lib ranlib ../lib/libddvlib.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF corematx.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corematx.c:135: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dvncode.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from dvncode.c:69: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmmdb1.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmmdb1.c: In function ‘BiostrucAsnRead’: objmmdb1.c:90:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 90 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiostrucIdFree’: objmmdb1.c:323:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 323 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘BiostrucIdAsnRead’: objmmdb1.c:358:12: warning: unused variable ‘isError’ [-Wunused-variable] 358 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucSetAsnRead’: objmmdb1.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 547 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiostrucAnnotSetAsnRead’: objmmdb1.c:716:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 716 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiostrucResidueGraphSetAsnRead’: objmmdb1.c:885:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 885 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiostrucDescrFree’: objmmdb1.c:1015:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1015 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘BiostrucDescrAsnRead’: objmmdb1.c:1059:12: warning: unused variable ‘isError’ [-Wunused-variable] 1059 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucHistoryAsnRead’: objmmdb1.c:1270:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1270 | AsnReadFunc func; | ^~~~ objmmdb1.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable] 1269 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucReplaceAsnRead’: objmmdb1.c:1450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1450 | AsnReadFunc func; | ^~~~ objmmdb1.c:1449:12: warning: unused variable ‘isError’ [-Wunused-variable] 1449 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseFree’: objmmdb1.c:1618:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1618 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘BiostrucSourceAsnRead’: objmmdb1.c:1652:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1652 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseAsnRead’: objmmdb1.c:1753:12: warning: unused variable ‘isError’ [-Wunused-variable] 1753 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucGraphAsnRead’: objmmdb1.c:2001:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2001 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘BiomolDescrFree’: objmmdb1.c:2139:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2139 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘BiomolDescrAsnRead’: objmmdb1.c:2189:12: warning: unused variable ‘isError’ [-Wunused-variable] 2189 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘ResidueGraphAsnRead’: objmmdb1.c:2446:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2446 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘MoleculeGraphAsnRead’: objmmdb1.c:2654:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2654 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘InterResidueBondAsnRead’: objmmdb1.c:2856:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2856 | AsnReadFunc func; | ^~~~ objmmdb1.c:2855:12: warning: unused variable ‘isError’ [-Wunused-variable] 2855 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘ResidueAsnRead’: objmmdb1.c:3037:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3037 | AsnReadFunc func; | ^~~~ objmmdb1.c:3036:12: warning: unused variable ‘isError’ [-Wunused-variable] 3036 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘ResidueGraphPntrFree’: objmmdb1.c:3177:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3177 | Pointer pnt; | ^~~ objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’: objmmdb1.c:3212:12: warning: unused variable ‘isError’ [-Wunused-variable] 3212 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucGraphPntrAsnRead’: objmmdb1.c:3399:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3399 | AsnReadFunc func; | ^~~~ objmmdb1.c:3398:12: warning: unused variable ‘isError’ [-Wunused-variable] 3398 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘BiostrucResidueGraphSetPntrAsnRead’: objmmdb1.c:3565:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3565 | AsnReadFunc func; | ^~~~ objmmdb1.c:3564:12: warning: unused variable ‘isError’ [-Wunused-variable] 3564 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘AtomAsnRead’: objmmdb1.c:3732:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3732 | AsnReadFunc func; | ^~~~ objmmdb1.c: In function ‘IntraResidueBondAsnRead’: objmmdb1.c:3924:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3924 | AsnReadFunc func; | ^~~~ objmmdb1.c:3923:12: warning: unused variable ‘isError’ [-Wunused-variable] 3923 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘ChiralCenterAsnRead’: objmmdb1.c:4097:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4097 | AsnReadFunc func; | ^~~~ objmmdb1.c:4096:12: warning: unused variable ‘isError’ [-Wunused-variable] 4096 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘AtomPntrAsnRead’: objmmdb1.c:4286:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4286 | AsnReadFunc func; | ^~~~ objmmdb1.c:4285:12: warning: unused variable ‘isError’ [-Wunused-variable] 4285 | Boolean isError = FALSE; | ^~~~~~~ objmmdb1.c: In function ‘AtomPntrSetAsnRead’: objmmdb1.c:4441:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4441 | AsnReadFunc func; | ^~~~ In file included from ../include/strimprt.h:73, from objmmdb1.c:5: objmmdb1.c: At top level: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from objmmdb1.c:5: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objmmdb1.c: In function ‘BiostrucIdAsnRead’: objmmdb1.c:411:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 411 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb1.c: In function ‘BiostrucDescrAsnRead’: objmmdb1.c:1126:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1126 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb1.c: In function ‘BiomolDescrAsnRead’: objmmdb1.c:2284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2284 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb1.c: In function ‘BiostrucSourceAsnRead’: objmmdb1.c:1802:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1802 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb1.c:1752:10: note: ‘choice’ was declared here 1752 | Uint1 choice; | ^~~~~~ objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’: objmmdb1.c:3265:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3265 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmmdb2.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmmdb2.c: In function ‘BiostrucModelAsnRead’: objmmdb2.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 88 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘ModelDescrFree’: objmmdb2.c:242:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 242 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘ModelDescrAsnRead’: objmmdb2.c:289:12: warning: unused variable ‘isError’ [-Wunused-variable] 289 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘ModelSpaceAsnRead’: objmmdb2.c:512:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 512 | AsnReadFunc func; | ^~~~ objmmdb2.c:511:12: warning: unused variable ‘isError’ [-Wunused-variable] 511 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘Coordinates_coordinatesFree’: objmmdb2.c:709:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 709 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’: objmmdb2.c:743:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 743 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘Coordinates_coordinatesAsnRead’: objmmdb2.c:831:12: warning: unused variable ‘isError’ [-Wunused-variable] 831 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘ReferenceFrameAsnRead’: objmmdb2.c:1063:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1063 | AsnReadFunc func; | ^~~~ objmmdb2.c:1062:12: warning: unused variable ‘isError’ [-Wunused-variable] 1062 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘CoordinatesFree’: objmmdb2.c:1193:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1193 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘CoordinatesAsnRead’: objmmdb2.c:1231:12: warning: unused variable ‘isError’ [-Wunused-variable] 1231 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘AtomicCoordinatesAsnRead’: objmmdb2.c:1420:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1420 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘Surface_surfaceFree’: objmmdb2.c:1640:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1640 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’: objmmdb2.c:1686:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1686 | AsnReadFunc func; | ^~~~ objmmdb2.c:1685:12: warning: unused variable ‘isError’ [-Wunused-variable] 1685 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘Surface_surfaceAsnRead’: objmmdb2.c:1766:12: warning: unused variable ‘isError’ [-Wunused-variable] 1766 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘DensityCoordinatesAsnRead’: objmmdb2.c:2030:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2030 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘ModelSpacePointsAsnRead’: objmmdb2.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2263 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘AtomicTemperatureFactorsFree’: objmmdb2.c:2404:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2404 | Pointer pnt; | ^~~ objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’: objmmdb2.c:2439:12: warning: unused variable ‘isError’ [-Wunused-variable] 2439 | Boolean isError = FALSE; | ^~~~~~~ objmmdb2.c: In function ‘AtomicOccupanciesAsnRead’: objmmdb2.c:2615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2615 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘AlternateConformationIdsAsnRead’: objmmdb2.c:2760:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2760 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘ConformationEnsembleAsnRead’: objmmdb2.c:2890:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2890 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘IsotropicTemperatureFactorsAsnRead’: objmmdb2.c:3054:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3054 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘AnisotropicTemperatureFactorsAsnRead’: objmmdb2.c:3221:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3221 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘TMeshAsnRead’: objmmdb2.c:3426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3426 | AsnReadFunc func; | ^~~~ objmmdb2.c: In function ‘TrianglesAsnRead’: objmmdb2.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3626 | AsnReadFunc func; | ^~~~ In file included from ../include/strimprt.h:72, from objmmdb2.c:5: objmmdb2.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from objmmdb2.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from objmmdb2.c:5: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objmmdb2.c: In function ‘CoordinatesAsnRead’: objmmdb2.c:1281:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1281 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c: In function ‘ModelDescrAsnRead’: objmmdb2.c:366:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 366 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’: objmmdb2.c:2485:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2485 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’: objmmdb2.c:877:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 877 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c:830:10: note: ‘choice’ was declared here 830 | Uint1 choice; | ^~~~~~ objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’: objmmdb2.c:1828:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1828 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb2.c:1765:10: note: ‘choice’ was declared here 1765 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmmdb3.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmmdb3.c: In function ‘BiostrucFeatureSetAsnRead’: objmmdb3.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ChemGraphPntrsFree’: objmmdb3.c:220:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 220 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘AtomPntrsAsnRead’: objmmdb3.c:443:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 443 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ChemGraphAlignmentAsnRead’: objmmdb3.c:626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 626 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ChemGraphInteractionAsnRead’: objmmdb3.c:824:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 824 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘SphereAsnRead’: objmmdb3.c:1024:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1024 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ConeAsnRead’: objmmdb3.c:1192:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1192 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘CylinderAsnRead’: objmmdb3.c:1372:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1372 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BrickAsnRead’: objmmdb3.c:1557:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1557 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘TransformAsnRead’: objmmdb3.c:1796:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1796 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BiostrucFeatureSetDescrFree’: objmmdb3.c:1921:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1921 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘Location_locationFree’: objmmdb3.c:2161:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2161 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘BiostrucFeatureAsnRead’: objmmdb3.c:2206:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2206 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘Property_propertyFree’: objmmdb3.c:2722:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2722 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘ColorPropAsnRead’: objmmdb3.c:2798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2798 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘CameraAsnRead’: objmmdb3.c:2986:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2986 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BiostrucScriptAsnRead’: objmmdb3.c:3171:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3171 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RegionPntrsAsnRead’: objmmdb3.c:3330:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3330 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RegionSimilarityAsnRead’: objmmdb3.c:3648:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3648 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘OtherFeatureAsnRead’: objmmdb3.c:3825:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3825 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BiostrucMoleculePntrAsnRead’: objmmdb3.c:3999:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3999 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘MoleculePntrsAsnRead’: objmmdb3.c:4342:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4342 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ResidueExplicitPntrsAsnRead’: objmmdb3.c:4505:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4505 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ResidueIntervalPntrAsnRead’: objmmdb3.c:4673:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4673 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RegionCoordinatesAsnRead’: objmmdb3.c:4845:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4845 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RegionBoundaryFree’: objmmdb3.c:4981:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 4981 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘AlignStatsAsnRead’: objmmdb3.c:5212:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5212 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘RealValueAsnRead’: objmmdb3.c:5454:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5454 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘ModelSpacePointAsnRead’: objmmdb3.c:5615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5615 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘MoveFree’: objmmdb3.c:5759:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 5759 | Pointer pnt; | ^~~ objmmdb3.c: In function ‘RotMatrixAsnRead’: objmmdb3.c:5967:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5967 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘TransMatrixAsnRead’: objmmdb3.c:6200:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6200 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘GLMatrixAsnRead’: objmmdb3.c:6379:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6379 | AsnReadFunc func; | ^~~~ objmmdb3.c: In function ‘BiostrucScriptStepAsnRead’: objmmdb3.c:6680:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6680 | AsnReadFunc func; | ^~~~ In file included from ../include/strimprt.h:72, from objmmdb3.c:5: objmmdb3.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from objmmdb3.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from objmmdb3.c:5: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ objmmdb3.c: In function ‘MoveAsnRead’: objmmdb3.c:5839:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5839 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘ChemGraphPntrsAsnRead’: objmmdb3.c:307:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 307 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘RegionBoundaryAsnRead’: objmmdb3.c:5075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5075 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘ResiduePntrsAsnRead’: objmmdb3.c:4213:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4213 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘RegionPntrsAsnRead’: objmmdb3.c:3464:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3464 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c:3409:10: note: ‘choice’ was declared here 3409 | Uint1 choice; | ^~~~~~ objmmdb3.c: In function ‘BiostrucFeatureSetDescrAsnRead’: objmmdb3.c:2024:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2024 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c: In function ‘BiostrucFeatureAsnRead’: objmmdb3.c:2691:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2691 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c:2626:10: note: ‘choice’ was declared here 2626 | Uint1 choice; | ^~~~~~ objmmdb3.c:2370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2370 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmmdb3.c:2308:10: note: ‘choice’ was declared here 2308 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcn3d.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objcn3d.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objcn3d.c: In function ‘Cn3dStyleDictionaryAsnRead’: objcn3d.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 87 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dUserAnnotationsAsnRead’: objcn3d.c:251:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 251 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dColorAsnRead’: objcn3d.c:415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 415 | AsnReadFunc func; | ^~~~ objcn3d.c:414:12: warning: unused variable ‘isError’ [-Wunused-variable] 414 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dBackboneStyleAsnRead’: objcn3d.c:605:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 605 | AsnReadFunc func; | ^~~~ objcn3d.c:604:12: warning: unused variable ‘isError’ [-Wunused-variable] 604 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dGeneralStyleAsnRead’: objcn3d.c:789:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 789 | AsnReadFunc func; | ^~~~ objcn3d.c:788:12: warning: unused variable ‘isError’ [-Wunused-variable] 788 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dBackboneLabelStyleAsnRead’: objcn3d.c:972:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 972 | AsnReadFunc func; | ^~~~ objcn3d.c:971:12: warning: unused variable ‘isError’ [-Wunused-variable] 971 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dStyleSettingsAsnRead’: objcn3d.c:1175:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1175 | AsnReadFunc func; | ^~~~ objcn3d.c:1174:12: warning: unused variable ‘isError’ [-Wunused-variable] 1174 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dStyleSettingsSetAsnRead’: objcn3d.c:1578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1578 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dStyleTableItemAsnRead’: objcn3d.c:1707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1707 | AsnReadFunc func; | ^~~~ objcn3d.c:1706:12: warning: unused variable ‘isError’ [-Wunused-variable] 1706 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dResidueRangeAsnRead’: objcn3d.c:1872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1872 | AsnReadFunc func; | ^~~~ objcn3d.c:1871:12: warning: unused variable ‘isError’ [-Wunused-variable] 1871 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dMoleculeLocationAsnRead’: objcn3d.c:2035:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2035 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dObjectLocationAsnRead’: objcn3d.c:2198:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2198 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dUserAnnotationAsnRead’: objcn3d.c:2363:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2363 | AsnReadFunc func; | ^~~~ objcn3d.c: In function ‘Cn3dGLMatrixAsnRead’: objcn3d.c:2555:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2555 | AsnReadFunc func; | ^~~~ objcn3d.c:2554:12: warning: unused variable ‘isError’ [-Wunused-variable] 2554 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dVectorAsnRead’: objcn3d.c:2843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2843 | AsnReadFunc func; | ^~~~ objcn3d.c:2842:12: warning: unused variable ‘isError’ [-Wunused-variable] 2842 | Boolean isError = FALSE; | ^~~~~~~ objcn3d.c: In function ‘Cn3dViewSettingsAsnRead’: objcn3d.c:3016:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3016 | AsnReadFunc func; | ^~~~ objcn3d.c:3015:12: warning: unused variable ‘isError’ [-Wunused-variable] 3015 | Boolean isError = FALSE; | ^~~~~~~ In file included from ../include/mapcn3d.h:8, from objcn3d.c:5: objcn3d.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/mapcn3d.h:8, from objcn3d.c:5: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/mmdbapi1.h:232, from ../include/mmdbapi.h:92, from mmdbapi.c:116: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi.c: In function ‘MakeAModelstruc’: mmdbapi.c:192:11: warning: unused variable ‘iCount’ [-Wunused-variable] 192 | Int4 iCount = 0; | ^~~~~~ mmdbapi.c:189:11: warning: unused variable ‘pdnmsCount’ [-Wunused-variable] 189 | PDNMS pdnmsCount = NULL; | ^~~~~~~~~~ mmdbapi.c: In function ‘AddPFBSelect’: mmdbapi.c:532:11: warning: unused variable ‘pmsdStruc’ [-Wunused-variable] 532 | PMSD pmsdStruc = NULL; | ^~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mmdbapi1.c:294: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi1.c: In function ‘FreeAtomicModelAsnLists’: mmdbapi1.c:1037:21: warning: unused variable ‘pcoThis’ [-Wunused-variable] 1037 | CoordinatesPtr pcoThis = NULL; | ^~~~~~~ mmdbapi1.c: In function ‘FetchBS’: mmdbapi1.c:1242:13: warning: unused variable ‘bIsNetwork’ [-Wunused-variable] 1242 | Boolean bIsNetwork = FALSE; | ^~~~~~~~~~ mmdbapi1.c: In function ‘FreeSurfaceModelAsnList’: mmdbapi1.c:1627:16: warning: variable ‘pvnX’ set but not used [-Wunused-but-set-variable] 1627 | ValNodePtr pvnX = NULL; | ^~~~ mmdbapi1.c: In function ‘MakeChemGraphNodeList’: mmdbapi1.c:2343:16: warning: variable ‘pvnThis’ set but not used [-Wunused-but-set-variable] 2343 | ValNodePtr pvnThis = NULL; | ^~~~~~~ mmdbapi1.c: In function ‘DoApplyTransform’: mmdbapi1.c:2573:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 2573 | PMSD pmsdThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘DoReverseTransform’: mmdbapi1.c:2713:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 2713 | PMSD pmsdThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘InstBSAnnotSet’: mmdbapi1.c:2860:8: warning: unused variable ‘psfsThis’ [-Wunused-variable] 2860 | PSFS psfsThis = NULL; | ^~~~~~~~ mmdbapi1.c:2859:22: warning: unused variable ‘pbsfThis’ [-Wunused-variable] 2859 | BiostrucFeaturePtr pbsfThis = NULL; | ^~~~~~~~ mmdbapi1.c:2855:9: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 2855 | PMSD pmsdThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘BiosToSeq’: mmdbapi1.c:2978:19: warning: unused variable ‘loc1’ [-Wunused-variable] 2978 | ValNodePtr loc1 = NULL; | ^~~~ mmdbapi1.c:2967:22: warning: unused variable ‘pbsf’ [-Wunused-variable] 2967 | BiostrucFeaturePtr pbsf=NULL; | ^~~~ mmdbapi1.c: In function ‘fnPBSFtoPSA’: mmdbapi1.c:3174:19: warning: unused variable ‘loc1’ [-Wunused-variable] 3174 | ValNodePtr loc1 = NULL; | ^~~~ mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’: mmdbapi1.c:3408:19: warning: unused variable ‘loc1’ [-Wunused-variable] 3408 | ValNodePtr loc1 = NULL; | ^~~~ mmdbapi1.c:3397:22: warning: unused variable ‘pbsf’ [-Wunused-variable] 3397 | BiostrucFeaturePtr pbsf=NULL; | ^~~~ mmdbapi1.c: In function ‘InstallAlignedSlave’: mmdbapi1.c:3877:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 3877 | Int2 iTest; | ^~~~~ mmdbapi1.c:3874:9: warning: unused variable ‘psfsThis’ [-Wunused-variable] 3874 | PSFS psfsThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘BiostrucAddFeature’: mmdbapi1.c:4184:11: warning: variable ‘ncbiVast’ set but not used [-Wunused-but-set-variable] 4184 | Boolean ncbiVast = FALSE; | ^~~~~~~~ mmdbapi1.c:4182:11: warning: variable ‘pdbFootnote’ set but not used [-Wunused-but-set-variable] 4182 | Boolean pdbFootnote = FALSE; | ^~~~~~~~~~~ mmdbapi1.c:4181:11: warning: variable ‘pdbSite’ set but not used [-Wunused-but-set-variable] 4181 | Boolean pdbSite = FALSE; | ^~~~~~~ mmdbapi1.c:4172:15: warning: unused variable ‘pdvnThis’ [-Wunused-variable] 4172 | DValNodePtr pdvnThis = NULL; | ^~~~~~~~ mmdbapi1.c: In function ‘BiostrucAsnGet’: mmdbapi1.c:5289:18: warning: variable ‘aop’ set but not used [-Wunused-but-set-variable] 5289 | AsnOptionPtr aop; | ^~~ mmdbapi1.c: In function ‘BiosToSeq’: mmdbapi1.c:3083:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=] 3083 | sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from mmdbapi1.c:294: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdbapi1.c:3127:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3127 | dsp->ids->next = slavesip; | ~~~~~~~~~~~~~~~^~~~~~~~~~ mmdbapi1.c: In function ‘fnPBSFtoPSA’: mmdbapi1.c:3275:52: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=] 3275 | sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from mmdbapi1.c:294: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’: mmdbapi1.c:3515:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=] 3515 | sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from mmdbapi1.c:294: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdbapi1.c:3559:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3559 | dsp->ids->next = slavesip; | ~~~~~~~~~~~~~~~^~~~~~~~~~ mmdbapi1.c: In function ‘InstBSAnnotSet’: mmdbapi1.c:2885:15: warning: ‘iMMDBId’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2885 | pdnmsThis = FindLoadedBiostruc(NULL, iMMDBId); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mmdbapi2.c:159: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi2.c: In function ‘GetAtomLocs’: mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1471 | if (pmadThis) | ^ mmdbapi2.c: In function ‘AssignAtomLocId’: mmdbapi2.c:1537:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1537 | Int2 iTest = 0; | ^~~~~ mmdbapi2.c: In function ‘AssignBackBone’: mmdbapi2.c:1686:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1686 | Int2 iTest = 0; | ^~~~~ mmdbapi2.c: In function ‘AssignVirtual’: mmdbapi2.c:1790:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1790 | Int2 iTest = 0; | ^~~~~ mmdbapi2.c: In function ‘AssignIons’: mmdbapi2.c:1846:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1846 | Int2 iTest = 0; | ^~~~~ mmdbapi2.c: In function ‘MolFromPDBChain’: mmdbapi2.c:1931:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1931 | Int2 iTest; | ^~~~~ mmdbapi2.c: In function ‘SeqStringFromMol’: mmdbapi2.c:1948:9: warning: unused variable ‘iTest’ [-Wunused-variable] 1948 | Int4 iTest =0; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mmdbapi3.c:207: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi3.c: In function ‘WritePDBHeader’: mmdbapi3.c:840:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 840 | if(org) | ^~ mmdbapi3.c:845:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 845 | src = orgstring; | ^~~ mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 840 | if(org) | ^ mmdbapi3.c: In function ‘WritePDBRemarks’: mmdbapi3.c:1389:8: warning: unused variable ‘len’ [-Wunused-variable] 1389 | int len; | ^~~ mmdbapi3.c:1388:9: warning: unused variable ‘pcThis’ [-Wunused-variable] 1388 | Char pcThis[81]; | ^~~~~~ mmdbapi3.c:1387:21: warning: unused variable ‘pbsdrLast’ [-Wunused-variable] 1387 | BiostrucDescrPtr pbsdrLast = NULL; | ^~~~~~~~~ mmdbapi3.c:1386:21: warning: unused variable ‘pbsdrThis’ [-Wunused-variable] 1386 | BiostrucDescrPtr pbsdrThis = NULL; | ^~~~~~~~~ mmdbapi3.c: In function ‘WritePDBConnect’: mmdbapi3.c:1610:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 1610 | Int2 iTest; | ^~~~~ mmdbapi3.c: In function ‘WritePDBModelList’: mmdbapi3.c:1625:10: warning: variable ‘iCount’ set but not used [-Wunused-but-set-variable] 1625 | Int4 iCount; | ^~~~~~ mmdbapi3.c: In function ‘WriteKinAtom’: mmdbapi3.c:2287:11: warning: unused variable ‘pcElName’ [-Wunused-variable] 2287 | CharPtr pcElName = NULL; | ^~~~~~~~ mmdbapi3.c: In function ‘WriteFASTAMolecule’: mmdbapi3.c:3537:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 3537 | Int4 iTest =0; | ^~~~~ mmdbapi3.c: In function ‘WriteKinAtom’: mmdbapi3.c:2314:12: warning: ‘iTemp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2314 | if (iTemp < TempsKine[(iIndex-1)]) return; /* too low */ | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/mmdbapi1.h:232, from ../include/mmdbapi.h:92, from mmdbapi4.c:106: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mmdbapi4.c: In function ‘RefreshSurface’: mmdbapi4.c:147:10: warning: unused variable ‘iVal’ [-Wunused-variable] 147 | Int4 iVal = 0; | ^~~~ mmdbapi4.c: In function ‘FreeCoordinatesAsnLists’: mmdbapi4.c:335:28: warning: variable ‘pdcThis’ set but not used [-Wunused-but-set-variable] 335 | DensityCoordinatesPtr pdcThis = NULL; | ^~~~~~~ mmdbapi4.c: In function ‘FreeRedundantAsn’: mmdbapi4.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 371 | PMMD pmmdThis = NULL; | ^~~~~~~~ mmdbapi4.c:370:11: warning: unused variable ‘pdnmmThis’ [-Wunused-variable] 370 | PDNMM pdnmmThis = NULL; | ^~~~~~~~~ mmdbapi4.c:367:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable] 367 | BiostrucModelPtr pbsmThis = NULL; | ^~~~~~~~ mmdbapi4.c: In function ‘RefreshModelAsnMem’: mmdbapi4.c:474:13: warning: unused variable ‘iCoordSets’ [-Wunused-variable] 474 | Int4 iCoordSets = 0; | ^~~~~~~~~~ mmdbapi4.c:465:20: warning: unused variable ‘pappThis’ [-Wunused-variable] 465 | AtomPntrsPtr pappThis = NULL; | ^~~~~~~~ mmdbapi4.c:464:27: warning: unused variable ‘pmspThis’ [-Wunused-variable] 464 | ModelSpacePointsPtr pmspThis = NULL; | ^~~~~~~~ mmdbapi4.c:463:28: warning: unused variable ‘pocThis’ [-Wunused-variable] 463 | AtomicOccupanciesPtr pocThis = NULL; | ^~~~~~~ mmdbapi4.c:458:34: warning: unused variable ‘paciThis’ [-Wunused-variable] 458 | AlternateConformationIdsPtr paciThis = NULL; | ^~~~~~~~ mmdbapi4.c: In function ‘RebuildChemGraphAsn’: mmdbapi4.c:931:15: warning: unused variable ‘bOK’ [-Wunused-variable] 931 | Boolean bOK = TRUE; | ^~~ mmdbapi4.c: In function ‘WriteASNChemGraphOnly’: mmdbapi4.c:1192:10: warning: unused variable ‘iHash’ [-Wunused-variable] 1192 | Int4 iHash = 0; | ^~~~~ mmdbapi4.c: In function ‘FreeSingleModel’: mmdbapi4.c:1336:11: warning: unused variable ‘pdnml’ [-Wunused-variable] 1336 | PDNML pdnml = NULL; | ^~~~~ mmdbapi4.c:1332:22: warning: unused variable ‘pbsmTemp’ [-Wunused-variable] 1332 | BiostrucModelPtr pbsmTemp = NULL; | ^~~~~~~~ mmdbapi4.c: In function ‘WriteAsnModelList’: mmdbapi4.c:1505:14: warning: unused variable ‘paioAIP’ [-Wunused-variable] 1505 | AsnIoPtr paioAIP = NULL; | ^~~~~~~ mmdbapi4.c:1502:11: warning: unused variable ‘pmldThis’ [-Wunused-variable] 1502 | PMLD pmldThis = NULL; | ^~~~~~~~ mmdbapi4.c:1498:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1498 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ mmdbapi4.c:1496:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable] 1496 | BiostrucModelPtr pbsmThis = NULL; | ^~~~~~~~ mmdbapi4.c:1495:17: warning: unused variable ‘pBSThis’ [-Wunused-variable] 1495 | BiostrucPtr pBSThis = NULL; | ^~~~~~~ mmdbapi4.c:1494:13: warning: unused variable ‘bFirst’ [-Wunused-variable] 1494 | Boolean bFirst = TRUE; | ^~~~~~ mmdbapi4.c:1493:10: warning: unused variable ‘iTest’ [-Wunused-variable] 1493 | Int2 iTest = 0; | ^~~~~ mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’: mmdbapi4.c:1741:19: warning: unused variable ‘loc1’ [-Wunused-variable] 1741 | ValNodePtr loc1 = NULL; | ^~~~ mmdbapi4.c: In function ‘WriteAsnModelList’: mmdbapi4.c:1632:13: warning: ‘bRet’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1632 | return bRet; | ^~~~ mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’: mmdbapi4.c:1828:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=] 1828 | sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/mmdbapi1.h:232, from ../include/mmdbapi.h:92, from mmdbapi4.c:106: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdbapi4.c:1872:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1872 | dsp->ids->next = slavesip; | ~~~~~~~~~~~~~~~^~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mmdbentr.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vastsubs.c vastsubs.c: In function ‘LoadSubsetTable’: vastsubs.c:212:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 212 | fscanf(fd, "%d", &ndoms); | ^~~~~~~~~~~~~~~~~~~~~~~~ vastsubs.c:239:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 239 | fscanf(fd, "%d", &nsubs); | ^~~~~~~~~~~~~~~~~~~~~~~~ vastsubs.c:258:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 258 | fscanf(fd, "%d", &j); | ^~~~~~~~~~~~~~~~~~~~ vastsubs.c:287:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 287 | fscanf(fd, "%8c", domid); | ^~~~~~~~~~~~~~~~~~~~~~~~ vastsubs.c:296:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 296 | fscanf(fd, "%d", &n); | ^~~~~~~~~~~~~~~~~~~~ vastsubs.c:302:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 302 | fscanf(fd, "%d %d %d", &subset[j], &grps[j], &ranks[j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vastsubs.c:304:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 304 | fscanf(fd, "\n"); | ^~~~~~~~~~~~~~~~ vastsubs.c:275:31: warning: ‘len’ may be used uninitialized in this function [-Wmaybe-uninitialized] 275 | SubsetArray[strindex + len++] = ch; | ~~~^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prunebsc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/prunebsc.h:10, from prunebsc.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ prunebsc.c: In function ‘PruneFeatureSet’: prunebsc.c:220:22: warning: variable ‘bsfpDie’ set but not used [-Wunused-but-set-variable] 220 | BiostrucFeaturePtr bsfpDie, bsfp, bsfpnew = NULL; | ^~~~~~~ prunebsc.c: In function ‘PruneModel’: prunebsc.c:272:30: warning: variable ‘mcsDie’ set but not used [-Wunused-but-set-variable] 272 | ModelCoordinateSetPtr mcs, mcsDie, mcsnew = NULL; | ^~~~~~ prunebsc.c: In function ‘PruneBiostruc’: prunebsc.c:559:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 559 | if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name)) | ^~~ prunebsc.c:574:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 574 | if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name)) | ^~~ prunebsc.c:663:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 663 | if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name)) | ^~~ In file included from ../include/ncbi.h:62, from ../include/prunebsc.h:10, from prunebsc.c:34: ../include/ncbistr.h:339:20: warning: ‘feature_name’ may be used uninitialized in this function [-Wmaybe-uninitialized] 339 | #define StringICmp Nlm_StringICmp | ^~~~~~~~~~~~~~ prunebsc.c:522:25: note: ‘feature_name’ was declared here 522 | CharPtr chnid, hetid, feature_name; | ^~~~~~~~~~~~ prunebsc.c:649:23: warning: ‘pirbnew’ may be used uninitialized in this function [-Wmaybe-uninitialized] 649 | pirbnew->next = pirb; | ~~~~~~~~~~~~~~^~~~~~ prunebsc.c:695:18: warning: ‘mol_id’ may be used uninitialized in this function [-Wmaybe-uninitialized] 695 | bsmpHead = PruneModel(bsmp, pvnIds, mol_id); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prunebsc.c:591:26: warning: ‘currenthet’ may be used uninitialized in this function [-Wmaybe-uninitialized] 591 | currenthet->next = het; | ~~~~~~~~~~~~~~~~~^~~~~ prunebsc.c:562:9: warning: ‘chnid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 562 | if (*chnid == *chain) | ^~~~~~ prunebsc.c:182:7: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] 182 | switch(mtype) | ^~~~~~ prunebsc.c:173:8: note: ‘mtype’ was declared here 173 | Int4 mtype, molecule_id; | ^~~~~ prunebsc.c:102:8: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] 102 | Int4 mtype; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcdd.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objcdd.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objcdd.c: In function ‘CddIdFree’: objcdd.c:53:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 53 | Pointer pnt; | ^~~ objcdd.c: In function ‘CddIdAsnRead’: objcdd.c:85:12: warning: unused variable ‘isError’ [-Wunused-variable] 85 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddIdSetAsnRead’: objcdd.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 248 | AsnReadFunc func; | ^~~~ objcdd.c:245:12: warning: unused variable ‘av’ [-Wunused-variable] 245 | DataVal av; | ^~ objcdd.c: In function ‘CddAsnRead’: objcdd.c:402:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 402 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘CddSetAsnRead’: objcdd.c:798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 798 | AsnReadFunc func; | ^~~~ objcdd.c:795:12: warning: unused variable ‘av’ [-Wunused-variable] 795 | DataVal av; | ^~ objcdd.c: In function ‘CddTreeAsnRead’: objcdd.c:935:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 935 | AsnReadFunc func; | ^~~~ objcdd.c:934:12: warning: unused variable ‘isError’ [-Wunused-variable] 934 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddTreeSetAsnRead’: objcdd.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1147 | AsnReadFunc func; | ^~~~ objcdd.c:1144:12: warning: unused variable ‘av’ [-Wunused-variable] 1144 | DataVal av; | ^~ objcdd.c: In function ‘CddPrefNodesAsnRead’: objcdd.c:1281:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1281 | AsnReadFunc func; | ^~~~ objcdd.c:1280:12: warning: unused variable ‘isError’ [-Wunused-variable] 1280 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddProjectAsnRead’: objcdd.c:1478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1478 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘CddOrgRefAsnRead’: objcdd.c:1668:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1668 | AsnReadFunc func; | ^~~~ objcdd.c:1667:12: warning: unused variable ‘isError’ [-Wunused-variable] 1667 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddOrgRefSetAsnRead’: objcdd.c:1838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1838 | AsnReadFunc func; | ^~~~ objcdd.c:1835:12: warning: unused variable ‘av’ [-Wunused-variable] 1835 | DataVal av; | ^~ objcdd.c: In function ‘CddPrefNodeDescrFree’: objcdd.c:1932:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1932 | Pointer pnt; | ^~~ objcdd.c: In function ‘CddPrefNodeDescrAsnRead’: objcdd.c:1967:12: warning: unused variable ‘isError’ [-Wunused-variable] 1967 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddPrefNodeDescrSetAsnRead’: objcdd.c:2130:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2130 | AsnReadFunc func; | ^~~~ objcdd.c:2127:12: warning: unused variable ‘av’ [-Wunused-variable] 2127 | DataVal av; | ^~ objcdd.c: In function ‘GlobalIdAsnRead’: objcdd.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2263 | AsnReadFunc func; | ^~~~ objcdd.c:2262:12: warning: unused variable ‘isError’ [-Wunused-variable] 2262 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddRepeatAsnRead’: objcdd.c:2450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2450 | AsnReadFunc func; | ^~~~ objcdd.c:2449:12: warning: unused variable ‘isError’ [-Wunused-variable] 2449 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddBookRefAsnRead’: objcdd.c:2627:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2627 | AsnReadFunc func; | ^~~~ objcdd.c:2626:12: warning: unused variable ‘isError’ [-Wunused-variable] 2626 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddDescrSetAsnRead’: objcdd.c:3183:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3183 | AsnReadFunc func; | ^~~~ objcdd.c:3180:12: warning: unused variable ‘av’ [-Wunused-variable] 3180 | DataVal av; | ^~ objcdd.c: In function ‘MatrixAsnRead’: objcdd.c:3315:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3315 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘TriangleAsnRead’: objcdd.c:3504:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3504 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘UpdateCommentFree’: objcdd.c:3641:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 3641 | Pointer pnt; | ^~~ objcdd.c: In function ‘UpdateCommentAsnRead’: objcdd.c:3685:12: warning: unused variable ‘isError’ [-Wunused-variable] 3685 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘UpdateAlignAsnRead’: objcdd.c:3889:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3889 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘RejectIdAsnRead’: objcdd.c:4064:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4064 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘FeatureEvidenceFree’: objcdd.c:4188:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 4188 | Pointer pnt; | ^~~ objcdd.c: In function ‘FeatureEvidenceAsnRead’: objcdd.c:4232:12: warning: unused variable ‘isError’ [-Wunused-variable] 4232 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘AlignAnnotAsnRead’: objcdd.c:4437:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4437 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘AlignAnnotSetAsnRead’: objcdd.c:4606:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4606 | AsnReadFunc func; | ^~~~ objcdd.c:4603:12: warning: unused variable ‘av’ [-Wunused-variable] 4603 | DataVal av; | ^~ objcdd.c: In function ‘DomainParentAsnRead’: objcdd.c:4738:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4738 | AsnReadFunc func; | ^~~~ objcdd.c:4737:12: warning: unused variable ‘isError’ [-Wunused-variable] 4737 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘SequenceTreeAsnRead’: objcdd.c:4919:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4919 | AsnReadFunc func; | ^~~~ objcdd.c:4918:12: warning: unused variable ‘isError’ [-Wunused-variable] 4918 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘AlgorithmTypeAsnRead’: objcdd.c:5107:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5107 | AsnReadFunc func; | ^~~~ objcdd.c:5106:12: warning: unused variable ‘isError’ [-Wunused-variable] 5106 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘SeqTreeNodeAsnRead’: objcdd.c:5410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5410 | AsnReadFunc func; | ^~~~ objcdd.c:5409:12: warning: unused variable ‘isError’ [-Wunused-variable] 5409 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘Children_footprintAsnRead’: objcdd.c:5595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5595 | AsnReadFunc func; | ^~~~ objcdd.c:5594:12: warning: unused variable ‘isError’ [-Wunused-variable] 5594 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘NodeAnnotationAsnRead’: objcdd.c:5887:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5887 | AsnReadFunc func; | ^~~~ objcdd.c:5886:12: warning: unused variable ‘isError’ [-Wunused-variable] 5886 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddViewerRectAsnRead’: objcdd.c:6053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6053 | AsnReadFunc func; | ^~~~ objcdd.c:6052:12: warning: unused variable ‘isError’ [-Wunused-variable] 6052 | Boolean isError = FALSE; | ^~~~~~~ objcdd.c: In function ‘CddViewerAsnRead’: objcdd.c:6235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6235 | AsnReadFunc func; | ^~~~ objcdd.c: In function ‘CddScriptAsnRead’: objcdd.c:6410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 6410 | AsnReadFunc func; | ^~~~ objcdd.c:6409:12: warning: unused variable ‘isError’ [-Wunused-variable] 6409 | Boolean isError = FALSE; | ^~~~~~~ In file included from objcdd.c:6: objcdd.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from objcdd.c:6: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from objcdd.c:7: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ objcdd.c: In function ‘CddIdAsnRead’: objcdd.c:134:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 134 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘CddPrefNodeDescrAsnRead’: objcdd.c:2016:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2016 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘UpdateCommentAsnRead’: objcdd.c:3746:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3746 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘FeatureEvidenceAsnRead’: objcdd.c:4293:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4293 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘CddDescrAsnRead’: objcdd.c:3007:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3007 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c: In function ‘SeqTreeNodeAsnRead’: objcdd.c:5561:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5561 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objcdd.c:5510:10: note: ‘choice’ was declared here 5510 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cddutil.c:336: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cddutil.c: In function ‘CddGetPmIds’: cddutil.c:649:17: warning: unused variable ‘bRefOpen’ [-Wunused-variable] 649 | Boolean bRefOpen = FALSE; | ^~~~~~~~ cddutil.c: In function ‘CddGetAnnotNames’: cddutil.c:807:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 807 | ValNodePtr vnp, vnpHead = NULL; | ^~~ cddutil.c: In function ‘CddCheckForRepeats’: cddutil.c:1034:7: warning: the address of ‘CddHasConsensus’ will always evaluate as ‘true’ [-Waddress] 1034 | if (!CddHasConsensus) return FALSE; | ^ cddutil.c:1013:23: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 1013 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddMSLDenDiagToMSLDenSeg’: cddutil.c:1663:30: warning: variable ‘lasts’ set but not used [-Wunused-but-set-variable] 1663 | Int4 lastm, lasts; | ^~~~~ cddutil.c:1663:23: warning: variable ‘lastm’ set but not used [-Wunused-but-set-variable] 1663 | Int4 lastm, lasts; | ^~~~~ cddutil.c: In function ‘SeqAlignInform’: cddutil.c:1938:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 1938 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddAlignInform’: cddutil.c:2125:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2125 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddPssmInform’: cddutil.c:2248:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2248 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddPosFreqInform’: cddutil.c:2306:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2306 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddDenDiagCposComputation’: cddutil.c:2368:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable] 2368 | ValNodePtr newRow, RowHead; | ^~~~~~~ cddutil.c:2365:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2365 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddCposComputation’: cddutil.c:2571:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable] 2571 | ValNodePtr newRow, RowHead; | ^~~~~~~ cddutil.c:2568:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 2568 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddRetrieveBioseqById’: cddutil.c:3379:15: warning: unused variable ‘retcode’ [-Wunused-variable] 3379 | Int2 retcode = 1; | ^~~~~~~ cddutil.c:3377:15: warning: unused variable ‘uid’ [-Wunused-variable] 3377 | Int4 uid = 0; | ^~~ cddutil.c: In function ‘CddCalculateTriangle’: cddutil.c:3534:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3534 | if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL; | ^~ cddutil.c:3534:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3534 | if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL; | ^~ cddutil.c: In function ‘CddCalculateQuerySim’: cddutil.c:3653:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3653 | if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL; | ^~ cddutil.c:3653:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3653 | if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL; | ^~ cddutil.c: In function ‘CddConsensus’: cddutil.c:3853:49: warning: variable ‘m_end’ set but not used [-Wunused-but-set-variable] 3853 | Int4 m_last, m_frst, s_insert, m_end; | ^~~~~ cddutil.c: In function ‘CddCposCompPart1’: cddutil.c:4247:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable] 4247 | Int2 iStatus; | ^~~~~~~ cddutil.c: In function ‘CddGetNewIndexForThreading’: cddutil.c:4392:14: warning: unused variable ‘Index’ [-Wunused-variable] 4392 | Int4 i, Index=0; | ^~~~~ cddutil.c: In function ‘CddCposComp’: cddutil.c:4474:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable] 4474 | ValNodePtr newRow, RowHead; | ^~~~~~~ cddutil.c: In function ‘CddDenDiagCposComp2KBP’: cddutil.c:4745:59: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable] 4745 | ValNodePtr ColumnHead, LetterHead, newRow, RowHead, newLetter; | ^~~~~~~ cddutil.c: In function ‘CddDumpTaxLinks’: cddutil.c:5727:16: warning: unused variable ‘txid’ [-Wunused-variable] 5727 | Int4 txid = 0, gi = 0; | ^~~~ cddutil.c: At top level: cddutil.c:6267:1: warning: "/*" within comment [-Wcomment] 6267 | /*---------------------------------------------------------------------------*/ | In file included from ../include/cddutil.h:205, from cddutil.c:353: ../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function] 642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function] 643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function] 666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr )); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function] 667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function] 668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cddutil.c:353: ../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function] 589 | static SeqIdPtr CddFindSeqIdInSeqLoc(SeqLocPtr location); | ^~~~~~~~~~~~~~~~~~~~ cddutil.c:4661:16: warning: ‘CddtakeMatrixCheckpoint’ defined but not used [-Wunused-function] 4661 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch, | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from cddutil.c:349: ../include/cdd.h:343:21: warning: ‘amp’ defined but not used [-Wunused-variable] 343 | static AsnModulePtr amp = ampx; | ^~~ ../include/cdd.h:342:19: warning: ‘at’ defined but not used [-Wunused-variable] 342 | static AsnTypePtr at = atx; | ^~ ../include/cdd.h:341:23: warning: ‘avn’ defined but not used [-Wunused-variable] 341 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/cdd.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "cdd.h24"; | ^~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from cddutil.c:336: In function ‘strncpy’, inlined from ‘CddRegularizeFileName’ at cddutil.c:984:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from cddutil.c:336: cddutil.c: In function ‘CddRegularizeFileName’: ../include/ncbistr.h:279:20: note: length computed here 279 | #define Nlm_StrLen strlen cddutil.c:984:26: note: in expansion of macro ‘Nlm_StrLen’ 984 | Nlm_StrNCpy(cAcc,cIn,Nlm_StrLen(cIn)-Nlm_StrLen(cEx)); | ^~~~~~~~~~ cddutil.c: In function ‘CddCopyMSLDenDiag’: cddutil.c:3015:25: warning: ‘ddpTail’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3015 | ddpTail->next = ddpNew; | ~~~~~~~~~~~~~~^~~~~~~~ In file included from ../include/ncbi.h:59, from cddutil.c:336: cddutil.c: In function ‘CddCalculateTriangle’: ../include/ncbimem.h:232:23: warning: ‘buffer1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ cddutil.c:3415:19: note: ‘buffer1’ was declared here 3415 | Uint1Ptr buffer1, buffer2, buffer3; | ^~~~~~~ cddutil.c:3524:22: warning: ‘pscTail’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3524 | pscTail->next = psc; pscTail = psc; psc = NULL; | ~~~~~~~~~~~~~~^~~~~ cddutil.c: In function ‘CddDenDiagCposComp2KBP’: cddutil.c:4974:11: warning: ‘pssm’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4974 | return(pssm); | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddposutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cddposutil.c:119: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cddposutil.c: In function ‘CddfindThreshSequences’: cddposutil.c:359:15: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable] 359 | SeqIdPtr thisId; /* Ids of target sequences in current SeqAlign */ | ^~~~~~ cddposutil.c: In function ‘CddfindDenseDiagThreshSequences’: cddposutil.c:386:16: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable] 386 | SeqIdPtr thisId; /* Ids of target sequences in current SeqAlign */ | ^~~~~~ cddposutil.c: In function ‘CddposFreqsToMatrix’: cddposutil.c:1038:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4)) + (sizetype)((unsigned int)a * 4))’ may be undefined [-Wsequence-point] 1038 | posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN; cddposutil.c: In function ‘CddposDenseDiagDemographics’: cddposutil.c:1094:17: warning: unused variable ‘is_new_id’ [-Wunused-variable] 1094 | Boolean is_new_id = FALSE; | ^~~~~~~~~ cddposutil.c:1093:17: warning: unused variable ‘segIndex’ [-Wunused-variable] 1093 | Int4 segIndex; /*Index for which piece we are at*/ | ^~~~~~~~ cddposutil.c:1092:25: warning: variable ‘startS’ set but not used [-Wunused-but-set-variable] 1092 | Int4 startQ, startS; /*Indices into array of starting positions*/ | ^~~~~~ cddposutil.c:1092:17: warning: variable ‘startQ’ set but not used [-Wunused-but-set-variable] 1092 | Int4 startQ, startS; /*Indices into array of starting positions*/ | ^~~~~~ cddposutil.c:1091:17: warning: unused variable ‘curId’ [-Wunused-variable] 1091 | SeqIdPtr curId; /*Used to compare seq. coming from different SeqAligns*/ | ^~~~~ cddposutil.c: In function ‘CddSetUpSearchInternalByLoc’: cddposutil.c:1246:39: warning: unused variable ‘last_length_adjustment’ [-Wunused-variable] 1246 | index, length, length_adjustment=0, last_length_adjustment, min_query_length; | ^~~~~~~~~~~~~~~~~~~~~~ cddposutil.c: In function ‘CddSetUpSearchWithReadDb’: cddposutil.c:2040:43: warning: variable ‘final_db_seq’ set but not used [-Wunused-but-set-variable] 2040 | Int4 final_virtual_db_seq=0, final_db_seq=0; | ^~~~~~~~~~~~ cddposutil.c:2006:28: warning: unused variable ‘virtual_oid_bit’ [-Wunused-variable] 2006 | Uint4 oid_bit, virtual_oid_bit; | ^~~~~~~~~~~~~~~ cddposutil.c:2006:19: warning: unused variable ‘oid_bit’ [-Wunused-variable] 2006 | Uint4 oid_bit, virtual_oid_bit; | ^~~~~~~ cddposutil.c:2005:30: warning: unused variable ‘virtual_mask_index’ [-Wunused-variable] 2005 | Int4 mask_index, virtual_mask_index; | ^~~~~~~~~~~~~~~~~~ cddposutil.c:2005:18: warning: unused variable ‘mask_index’ [-Wunused-variable] 2005 | Int4 mask_index, virtual_mask_index; | ^~~~~~~~~~ cddposutil.c:2004:19: warning: unused variable ‘alias_oidlist’ [-Wunused-variable] 2004 | OIDListPtr alias_oidlist; | ^~~~~~~~~~~~~ cddposutil.c:2003:19: warning: unused variable ‘use_private_gilist’ [-Wunused-variable] 2003 | Boolean use_private_gilist = FALSE; | ^~~~~~~~~~~~~~~~~~ cddposutil.c:2000:20: warning: unused variable ‘vnp’ [-Wunused-variable] 2000 | ValNodePtr vnp; | ^~~ cddposutil.c: In function ‘CddposReadAlignment’: cddposutil.c:2226:16: warning: variable ‘alignPos’ set but not used [-Wunused-but-set-variable] 2226 | Int4 alignPos, queryOffset, subjectOffset, matchLength; | ^~~~~~~~ In file included from ../include/cddutil.h:205, from cddposutil.c:131: cddposutil.c: At top level: ../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function] 642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function] 643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function] 666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr )); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function] 667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function] 668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from cddposutil.c:131: ../include/cddutil.h:507:27: warning: ‘CddReadBlastOptions’ declared ‘static’ but never defined [-Wunused-function] 507 | static PGPBlastOptionsPtr CddReadBlastOptions(BioseqPtr bsp, Int4 iPseudo, CharPtr matrix_name); | ^~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:512:13: warning: ‘BlastKarlinBlkCopy’ declared ‘static’ but never defined [-Wunused-function] 512 | static void BlastKarlinBlkCopy(BLAST_KarlinBlkPtr kbp_in,BLAST_KarlinBlkPtr kbp_out); | ^~~~~~~~~~~~~~~~~~ ../include/cddutil.h:516:13: warning: ‘CddputMatrixKbp’ declared ‘static’ but never defined [-Wunused-function] 516 | static void CddputMatrixKbp(FILE *checkFile, BLAST_KarlinBlkPtr kbp, | ^~~~~~~~~~~~~~~ ../include/cddutil.h:518:13: warning: ‘CddputMatrixMatrix’ declared ‘static’ but never defined [-Wunused-function] 518 | static void CddputMatrixMatrix(FILE *checkFile, | ^~~~~~~~~~~~~~~~~~ ../include/cddutil.h:522:16: warning: ‘CddtakeMatrixCheckpoint’ declared ‘static’ but never defined [-Wunused-function] 522 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch, | ^~~~~~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function] 589 | static SeqIdPtr CddFindSeqIdInSeqLoc(SeqLocPtr location); | ^~~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:591:25: warning: ‘CddRelocateSeqLoc’ declared ‘static’ but never defined [-Wunused-function] 591 | static void CddRelocateSeqLoc(SeqLocPtr location, SeqIdPtr sip, Int4 *ali); | ^~~~~~~~~~~~~~~~~ ../include/cddutil.h:592:25: warning: ‘CddSeqLocInExpAlign’ declared ‘static’ but never defined [-Wunused-function] 592 | static Int4 CddSeqLocInExpAlign(SeqLocPtr location, CddExpAlignPtr eap); | ^~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:593:25: warning: ‘CddFindSeqIdInAlignAnnot’ declared ‘static’ but never defined [-Wunused-function] 593 | static SeqIdPtr CddFindSeqIdInAlignAnnot(AlignAnnotPtr oldannot); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/cddutil.h:623:24: warning: ‘HitYet’ declared ‘static’ but never defined [-Wunused-function] 623 | static Boolean HitYet(Int4Ptr retlist, Int4 index, Int4 i); | ^~~~~~ ../include/cddutil.h:649:16: warning: ‘CddFixForXML’ declared ‘static’ but never defined [-Wunused-function] 649 | static CharPtr CddFixForXML(CharPtr pc); | ^~~~~~~~~~~~ cddposutil.c:971:13: warning: ‘CddfreePosFreqs’ defined but not used [-Wunused-function] 971 | static void CddfreePosFreqs(Nlm_FloatHi ** posFreqs, Int4 length) | ^~~~~~~~~~~~~~~ cddposutil.c: In function ‘CddposComputeSequenceWeights’: cddposutil.c:840:35: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized] 840 | posSearch->posSigma[qplace] = intervalSigma; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ cddposutil.c:829:10: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized] 829 | if (Sigma > 0) { | ^ cddposutil.c: In function ‘CddposDemographics’: cddposutil.c:1199:24: warning: ‘retrievalOffset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1199 | subjectOffset = curSegs->starts[startS] - retrievalOffset; | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cddposutil.c: In function ‘CddSetUpSearchWithReadDb’: cddposutil.c:1740:48: warning: ‘min_query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1740 | if( 0 != BlastComputeLengthAdjustment(1/min_query_length, | ~^~~~~~~~~~~~~~~~~ cddposutil.c:1246:63: note: ‘min_query_length’ was declared here 1246 | index, length, length_adjustment=0, last_length_adjustment, min_query_length; | ^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmime.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmime.c:76: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmime.c: In function ‘NcbiMimeAsn1Free’: objmime.c:126:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 126 | Pointer pnt; | ^~~ objmime.c: In function ‘NcbiMimeAsn1AsnRead’: objmime.c:173:12: warning: unused variable ‘isError’ [-Wunused-variable] 173 | Boolean isError = FALSE; | ^~~~~~~ objmime.c: In function ‘Data_dataFree’: objmime.c:382:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 382 | Pointer pnt; | ^~~ objmime.c: In function ‘EntrezGeneralAsnRead’: objmime.c:428:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 428 | AsnReadFunc func; | ^~~~ objmime.c:427:12: warning: unused variable ‘isError’ [-Wunused-variable] 427 | Boolean isError = FALSE; | ^~~~~~~ objmime.c: In function ‘Data_dataAsnRead’: objmime.c:522:12: warning: unused variable ‘isError’ [-Wunused-variable] 522 | Boolean isError = FALSE; | ^~~~~~~ objmime.c: In function ‘BiostrucAlignAsnRead’: objmime.c:801:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 801 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘BiostrucAlignSeqAsnRead’: objmime.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1027 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘BiostrucSeqAsnRead’: objmime.c:1220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1220 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘BiostrucSeqsAsnRead’: objmime.c:1415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1415 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘SeqAlignData_seq_align_dataFree’: objmime.c:1613:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1613 | Pointer pnt; | ^~~ objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’: objmime.c:1647:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1647 | AsnReadFunc func; | ^~~~ objmime.c: In function ‘SeqAlignData_seq_align_dataAsnRead’: objmime.c:1734:12: warning: unused variable ‘isError’ [-Wunused-variable] 1734 | Boolean isError = FALSE; | ^~~~~~~ objmime.c: In function ‘BundleSeqsAlignsAsnRead’: objmime.c:1973:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1973 | AsnReadFunc func; | ^~~~ In file included from ../include/mapmime.h:4, from objmime.c:81: objmime.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/mapmime.h:4, from objmime.c:81: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/mapmime.h:6, from objmime.c:81: ../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function] 642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function] 643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function] 666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr )); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function] 667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function] 668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ objmime.c: In function ‘NcbiMimeAsn1AsnRead’: objmime.c:235:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmime.c: In function ‘EntrezGeneralAsnRead’: objmime.c:584:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 584 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmime.c:521:10: note: ‘choice’ was declared here 521 | Uint1 choice; | ^~~~~~ objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’: objmime.c:1780:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1780 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmime.c:1733:10: note: ‘choice’ was declared here 1733 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF strucapi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from strucapi.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdalgs.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdatd.c thrdatd.c: In function ‘atd’: thrdatd.c:859:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 859 | for(i=0;ial[i]); printf("sai->al\n"); | ^~~ thrdatd.c:859:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 859 | for(i=0;ial[i]); printf("sai->al\n"); | ^~~~~~ thrdatd.c:860:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 860 | for(i=0;inmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n"); | ^~~ thrdatd.c:860:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 860 | for(i=0;inmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n"); | ^~~~~~ thrdatd.c:862:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 862 | for(i=0;ino[i]); printf("sli->no\n"); | ^~~ thrdatd.c:862:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 862 | for(i=0;ino[i]); printf("sli->no\n"); | ^~~~~~ thrdatd.c:863:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 863 | for(i=0;ico[i]); printf("sli->co\n"); | ^~~ thrdatd.c:863:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 863 | for(i=0;ico[i]); printf("sli->co\n"); | ^~~~~~ thrdatd.c:864:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 864 | for(i=0;inlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n"); | ^~~ thrdatd.c:864:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 864 | for(i=0;inlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n"); | ^~~~~~ thrdatd.c:865:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 865 | for(i=0;inmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n"); | ^~~ thrdatd.c:865:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 865 | for(i=0;inmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n"); | ^~~~~~ thrdatd.c:1014:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1014 | for(k=0;kal[k]); printf("sai->al\n"); | ^~~ thrdatd.c:1014:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1014 | for(k=0;kal[k]); printf("sai->al\n"); | ^~~~~~ thrdatd.c:1015:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1015 | for(k=0;ksq[k]); printf("sai->sq\n"); | ^~~ thrdatd.c:1015:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1015 | for(k=0;ksq[k]); printf("sai->sq\n"); | ^~~~~~ thrdatd.c:1017:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1017 | for(i=0;ino[i]); printf("sli->no\n"); | ^~~ thrdatd.c:1017:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1017 | for(i=0;ino[i]); printf("sli->no\n"); | ^~~~~~ thrdatd.c:1018:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1018 | for(i=0;ico[i]); printf("sli->co\n"); | ^~~ thrdatd.c:1018:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1018 | for(i=0;ico[i]); printf("sli->co\n"); | ^~~~~~ thrdatd.c:1019:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1019 | for(i=0;ilp[i]); printf("sli->lp\n"); | ^~~ thrdatd.c:1019:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1019 | for(i=0;ilp[i]); printf("sli->lp\n"); | ^~~~~~ thrdatd.c:1020:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1020 | for(i=0;icr[i]); printf("sli->cr\n"); | ^~~ thrdatd.c:1020:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1020 | for(i=0;icr[i]); printf("sli->cr\n"); | ^~~~~~ thrdatd.c:1244:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1244 | for(i=0;igss[i]); free(spe->gss); | ^~~ thrdatd.c:1244:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1244 | for(i=0;igss[i]); free(spe->gss); | ^~~~ thrdatd.c:1251:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1251 | for(i=0; inrr[i]); free(spn->nrr); | ^~~ thrdatd.c:1251:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1251 | for(i=0; inrr[i]); free(spn->nrr); | ^~~~ thrdatd.c:1255:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1255 | for(i=0; inrp[i]); free(spn->nrp); | ^~~ thrdatd.c:1255:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1255 | for(i=0; inrp[i]); free(spn->nrp); | ^~~~ thrdatd.c:1259:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1259 | for(i=0; inrf[i]); free(spn->nrf); | ^~~ thrdatd.c:1259:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1259 | for(i=0; inrf[i]); free(spn->nrf); | ^~~~ thrdatd.c:1260:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1260 | for(i=0; ifrf[i]); free(spn->frf); | ^~~ thrdatd.c:1260:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1260 | for(i=0; ifrf[i]); free(spn->frf); | ^~~~ thrdatd.c:201:8: warning: variable ‘hh’ set but not used [-Wunused-but-set-variable] 201 | float hh; | ^~ thrdatd.c:198:6: warning: variable ‘rf’ set but not used [-Wunused-but-set-variable] 198 | int rf; /* Reference position for a core element */ | ^~ thrdatd.c:188:14: warning: unused variable ‘m’ [-Wunused-variable] 188 | int i,j,k,l,m,n; /* Counters */ | ^ thrdatd.c:188:12: warning: unused variable ‘l’ [-Wunused-variable] 188 | int i,j,k,l,m,n; /* Counters */ | ^ thrdatd.c:171:6: warning: variable ‘nrp’ set but not used [-Wunused-but-set-variable] 171 | int nrp; /* Number of residue-peptide contacts in motif */ | ^~~ thrdatd.c:170:6: warning: variable ‘nrr’ set but not used [-Wunused-but-set-variable] 170 | int nrr; /* Number of residue-residue contacts in motif */ | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c thrdbwfi.c: In function ‘bwfi’: thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] 114 | } | ^ thrdbwfi.c:64:5: warning: ‘nt’ may be used uninitialized in this function [-Wmaybe-uninitialized] 64 | int nt; /* Number of threads within specified ensemble cutoff */ | ^~ thrdbwfi.c:89:20: warning: ‘nz’ may be used uninitialized in this function [-Wmaybe-uninitialized] 89 | cw=0.; ct=ttb->mx; for(i=0; i<=nz; i++) { | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcpal.c thrdcpal.c: In function ‘cpal’: thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type] 210 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcpll.c thrdcpll.c: In function ‘cpll’: thrdcpll.c:74:5: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable] 74 | int nrt; /* Number of residue types */ | ^~~ thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type] 229 | } | ^ thrdcpll.c:220:15: warning: ‘r2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 220 | cl->rf.t2[k]=r2; | ~~~~~~~~~~~~^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcprl.c thrdcprl.c: In function ‘cprl’: thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type] 261 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcxei.c thrdcxei.c: In function ‘cxei’: thrdcxei.c:94:15: warning: variable ‘ms’ set but not used [-Wunused-but-set-variable] 94 | int ntot, ms; | ^~ thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type] 205 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrddgri.c thrddgri.c: In function ‘g’: thrddgri.c:72:5: warning: variable ‘s0’ set but not used [-Wunused-but-set-variable] 72 | int s0; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsal0.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsalr.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsalu.c thrdsalu.c: In function ‘salu’: thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type] 83 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c thrdsgoi.c: In function ‘sgoi’: thrdsgoi.c:98:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 98 | for(i=0; i>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslo0.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslor.c thrdslor.c: In function ‘slor’: thrdslor.c:90:6: warning: ‘mp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 90 | int *mp; /* Motif-derived loop length limits */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslou.c thrdslou.c: In function ‘slou’: thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type] 114 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspci.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspea.c thrdspea.c: In function ‘spea’: thrdspea.c:91:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable] 91 | int nrt; /* Number of residue types in potential */ | ^~~ thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type] 189 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspel.c thrdspel.c: In function ‘spel’: thrdspel.c:88:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable] 88 | int nrt; /* Number of residue types in potential */ | ^~~ thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type] 188 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspni.c thrdspni.c: In function ‘spni’: thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type] 238 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdttb0.c thrdttb0.c: In function ‘ttb0’: thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type] 75 | } | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdttbi.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdzsc.c thrdzsc.c: In function ‘zsc’: thrdzsc.c:107:7: warning: unused variable ‘gs’ [-Wunused-variable] 107 | int g,gs; | ^~ thrdzsc.c:102:18: warning: unused variable ‘zsc’ [-Wunused-variable] 102 | float tg,tgp,tgm,zsc; /* Energy of shuffled sequence */ | ^~~ thrdzsc.c:95:5: warning: unused variable ‘ps’ [-Wunused-variable] 95 | int ps,ms,cs, | ^~ thrdzsc.c:80:5: warning: unused variable ‘temp’ [-Wunused-variable] 80 | int temp; /* Random index of the query sequence */ | ^~~~ thrdzsc.c:79:2: warning: unused variable ‘kk’ [-Wunused-variable] 79 | kk,itr,ii,jj; /* Counters */ | ^~ thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type] 369 | } | ^ thrdzsc.c:357:39: warning: ‘tg_max’ may be used uninitialized in this function [-Wmaybe-uninitialized] 357 | ttb->zsc[i_max]=ScalingFactor*(tg_max-avg)/disp; | ~~~~~~~^~~~~ rm -f libncbimmdb.a ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbimmdb.a ../lib ranlib ../lib/libncbimmdb.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF csim.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from csim.c:74: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ csim.c: In function ‘set_pam_200’: csim.c:163:29: warning: missing braces around initializer [-Wmissing-braces] 163 | static Int2 wgts[23][23] = { /* the PAM200 matrix */ | ^ 164 | 165 | 2,-2, 0, 0,-2,-1, 0, 1,-1,-1,-2,-1,-1,-3, 1, 1, 1,-5,-3, 0, 1, 1, 0, | { } 166 | -2, 5, 0,-1,-3, 1,-1,-3, 1,-2,-2, 2, 0,-3, 0, 0,-1, 1,-4,-2, 0, 1, 0, | { } 167 | 0, 0, 2, 2,-3, 0, 1, 0, 1,-1,-2, 1,-2,-2, 0, 1, 0,-4,-1,-2, 3, 2, 0, | { } 168 | 0,-1, 2, 3,-4, 1, 3, 0, 0,-2,-3, 0,-2,-4,-1, 0, 0,-6,-3,-2, 4, 3, 0, | { } 169 | -2,-3,-3,-4, 8,-4,-4,-3,-3,-2,-5,-4,-4,-4,-2, 0,-2,-6, 0,-2,-3,-3, 0, | { } 170 | -1, 1, 0, 1,-4, 4, 2,-1, 2,-2,-1, 0,-1,-4, 0,-1,-1,-4,-3,-2, 2, 4, 0, | { } 171 | 0,-1, 1, 3,-4, 2, 3, 0, 0,-2,-3, 0,-2,-4, 0, 0, 0,-6,-3,-2, 3, 4, 0, | { } 172 | 1,-3, 0, 0,-3,-1, 0, 4,-2,-2,-3,-2,-3,-3,-1, 1, 0,-5,-4,-1, 1, 0, 0, | { } 173 | -1, 1, 1, 0,-3, 2, 0,-2, 5,-2,-2, 0,-2,-1, 0,-1,-1,-3, 0,-2, 2, 2, 0, | { } 174 | -1,-2,-1,-2,-2,-2,-2,-2,-2, 4, 2,-1, 2, 1,-2,-1, 0,-5,-1, 3,-1,-1, 0, | { } 175 | -2,-2,-2,-3,-5,-1,-3,-3,-2, 2, 4,-2, 3, 1,-2,-2,-1,-4,-1, 1,-2,-1, 0, | { } 176 | -1, 2, 1, 0,-4, 0, 0,-2, 0,-1,-2, 4, 1,-4,-1, 0, 0,-3,-4,-2, 1, 1, 0, | { } 177 | -1, 0,-2,-2,-4,-1,-2,-3,-2, 2, 3, 1, 5, 0,-2,-1, 0,-4,-2, 1,-1, 0, 0, | { } 178 | -3,-3,-2,-4,-4,-4,-4,-3,-1, 1, 1,-4, 0, 7,-4,-2,-2, 0, 5,-1,-2,-3, 0, | { } 179 | 1, 0, 0,-1,-2, 0, 0,-1, 0,-2,-2,-1,-2,-4, 5, 1, 0,-5,-4,-1, 0, 1, 0, | { } 180 | 1, 0, 1, 0, 0,-1, 0, 1,-1,-1,-2, 0,-1,-2, 1, 2, 1,-2,-2,-1, 1, 1, 0, | { } 181 | 1,-1, 0, 0,-2,-1, 0, 0,-1, 0,-1, 0, 0,-2, 0, 1, 3,-4,-2, 0, 1, 0, 0, | { } 182 | -5, 1,-4,-6,-6,-4,-6,-5,-3,-5,-4,-3,-4, 0,-5,-2,-4,12, 0,-6,-3,-4, 0, | { } 183 | -3,-4,-1,-3, 0,-3,-3,-4, 0,-1,-1,-4,-2, 5,-4,-2,-2, 0, 7,-2,-1,-2, 0, | { } 184 | 0,-2,-2,-2,-2,-2,-2,-1,-2, 3, 1,-2, 1,-1,-1,-1, 0,-6,-2, 4,-1,-1, 0, | { } 185 | 1, 0, 3, 4,-3, 2, 3, 1, 2,-1,-2, 1,-1,-2, 0, 1, 1,-3,-1,-1, 4, 4, 0, | { } 186 | 1, 1, 2, 3,-3, 4, 4, 0, 2,-1,-1, 1, 0,-3, 1, 1, 0,-4,-2,-1, 4, 5, 0, | { } 187 | 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, | { 188 | }; | } csim.c:196:16: warning: array subscript has type ‘char’ [-Wchar-subscripts] 196 | V[achars[i]][achars[j]]=10*(wgts[i][j]); | ~~~~~~^~~ csim.c:196:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] 196 | V[achars[i]][achars[j]]=10*(wgts[i][j]); | ~~~~~~^~~ csim.c: In function ‘set_pam_file’: csim.c:228:18: warning: array subscript has type ‘char’ [-Wchar-subscripts] 228 | V[alph[i]][alph[j]]=(Int2)(10*weight); | ~~~~^~~ csim.c:228:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] 228 | V[alph[i]][alph[j]]=(Int2)(10*weight); | ~~~~^~~ csim.c: In function ‘big_pass’: csim.c:668:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 668 | va = v[A[i]]; | ~^~~ csim.c:692:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 692 | DIAG(i, j, c, p+va[B[j]]) /* diagonal */ | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c: In function ‘diff1’: csim.c:799:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 799 | va = v[A[1]]; | ~^~~ csim.c:805:23: warning: array subscript has type ‘char’ [-Wchar-subscripts] 805 | { c = va[B[j]] - ( GAP(j-1) + GAP(N-j) ); | ~^~~ csim.c:849:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 849 | va = v[A[i]]; | ~^~~ csim.c:853:45: warning: array subscript has type ‘char’ [-Wchar-subscripts] 853 | DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]]) | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:853:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 853 | DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]]) | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:874:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 874 | va = v[A[i+1]]; | ~^~~~~ csim.c:878:45: warning: array subscript has type ‘char’ [-Wchar-subscripts] 878 | DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]]) | ~^~~~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:878:53: warning: array subscript has type ‘char’ [-Wchar-subscripts] 878 | DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]]) | ~^~~~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:893:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 893 | if (c > midc || CC[j] != DD[j] && RR[j] == SS[j]) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ csim.c: In function ‘locate’: csim.c:974:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 974 | va = v[A[i]]; | ~^~~ csim.c:991:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 991 | DIAG(i, j, c, p+va[B[j]]) /* diagonal */ | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:1030:16: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1030 | va = v[A[(plist->m1)]]; | ~^~~~~~~~~~~~~ csim.c:1043:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1043 | DIAG((plist->m1), j, c, p+va[B[j]]) /* diagonal */ | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:1061:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1061 | if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~~~~~~^~~~~~~~~~ csim.c:1062:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1062 | || fi > rl && fj > cl ) ) | ~~~~~~~~^~~~~~~~~~ csim.c:1071:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1071 | if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~~~~~~^~~~~~~~~~ csim.c:1072:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1072 | || fi > rl && fj > cl ) ) | ~~~~~~~~^~~~~~~~~~ csim.c:1084:16: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1084 | va = v[B[(plist->n1)]]; | ~^~~~~~~~~~~~~ csim.c:1110:42: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1110 | DIAG(i, (plist->n1), c, p+va[A[i]]) | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c:1128:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1128 | if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~~~~~~^~~~~~~~~~ csim.c:1129:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1129 | || fi > rl && fj > cl ) ) | ~~~~~~~~^~~~~~~~~~ csim.c:1138:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1138 | if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~~~~~~^~~~~~~~~~ csim.c:1139:47: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1139 | || fi > rl && fj > cl ) ) | ~~~~~~~~^~~~~~~~~~ csim.c:1144:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1144 | if ( (plist->m1) == 1 && (plist->n1) == 1 || no_cross(flag, plist, &rl, &cl) ) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ csim.c: In function ‘small_pass’: csim.c:1186:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1186 | va = v[A[i]]; | ~^~~ csim.c:1212:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1212 | DIAG(i, j, c, p+va[B[j]]) /* diagonal */ | ~^~~ csim.c:440:11: note: in definition of macro ‘DIAG’ 440 | x = ( pvalue ); \ | ^~~~~~ csim.c: In function ‘display’: csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1360 | if (i < M || j < N) | ^ csim.c: In function ‘set_pam_file’: csim.c:227:12: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 227 | fscanf(fp, "%f", &weight); /**get the matrix**/ | ^~~~~~~~~~~~~~~~~~~~~~~~~ At top level: csim.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: csim.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ csim.c: In function ‘SIM’: csim.c:1071:62: warning: ‘dj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1071 | if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~^~~~ csim.c:928:23: note: ‘dj’ was declared here 928 | register Int4 di, dj; /* end-point associated with d */ | ^~ csim.c:1071:51: warning: ‘di’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1071 | if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl | ~~~^~~~ csim.c:928:19: note: ‘di’ was declared here 928 | register Int4 di, dj; /* end-point associated with d */ | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF db_slist.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/list.h:56, from db_slist.c:97: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ db_slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: db_slist.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dust.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from dust.c:102: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: dust.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ dust.c: In function ‘slpDust.constprop’: dust.c:655:23: warning: ‘sintp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 655 | slp->data.ptrvalue = (Pointer) sintp; | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_dust.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from blast_dust.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_dust.c:39:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 39 | static char const rcsid[] = | ^~~~~ blast_dust.c: In function ‘s_SlpDust’: blast_dust.c:348:23: warning: ‘sintp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 348 | slp->data.ptrvalue = (Pointer) sintp; | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF falign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from falign.c:92: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ falign.c: In function ‘fbld_table’: falign.c:490:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 490 | ecode = (ecode << 2) + encoding[*++q]; | ^~~~ falign.c:494:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 494 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘bbld_table’: falign.c:517:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 517 | ecode = (ecode << 2) + encoding[*--q]; | ^~~~ falign.c:521:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 521 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘rcbld_table’: falign.c:544:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 544 | ecode = (ecode << 2) + encoding[*--q]; | ^~~~ falign.c:548:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 548 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘ex_table’: falign.c:567:43: warning: array subscript has type ‘char’ [-Wchar-subscripts] 567 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘free_all’: falign.c:668:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 668 | if (df = cdiag_prev[l]) { | ^~ falign.c: In function ‘scan’: falign.c:688:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 688 | ecode = (ecode << 2) + encoding[*++q]; | ^~~~ falign.c:694:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 694 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c:710:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 710 | if (df = diag_prev[len1+len2-1-pos]) { | ^~ falign.c:719:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 719 | if (df=diag_prev[l]) { | ^~ falign.c: In function ‘fscan’: falign.c:763:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 763 | ecode = (ecode << 2) + encoding[*++q]; | ^~~~ falign.c:769:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 769 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘bscan’: falign.c:794:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 794 | ecode = (ecode << 2) + encoding[*--q]; | ^~~~ falign.c:800:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 800 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘rfscan’: falign.c:870:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 870 | ecode = (ecode << 2) + encoding[*++q]; | ^~~~ falign.c:876:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 876 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c:881:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 881 | if (df = diag_prev[len1+se2-pos]) { | ^~ falign.c:889:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 889 | if (df = diag_prev[len1+se2-pos]) { | ^~ falign.c: In function ‘trcscan’: falign.c:1476:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1476 | ecode = (ecode << 2) + encoding[*--q]; | ^~~~ falign.c:1482:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1482 | ecode = ((ecode & mask) << 2) + encoding[*q]; | ^~ falign.c: In function ‘rclocal’: falign.c:1547:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1547 | if (pf = diag_prev[ocur_diag]) { | ^~ falign.c: In function ‘enterS’: falign.c:1897:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1897 | if (s = findS(f->bgf)) { | ^ falign.c: In function ‘local’: falign.c:1958:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1958 | if (pf = diag_prev[cur_diag]) { | ^~ falign.c: In function ‘align’: falign.c:1999:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1999 | if (pf = cdiag_prev[cur_diag]) { | ^~ falign.c: In function ‘calign’: falign.c:2054:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2054 | if (pf = cdiag_prev[cur_diag]) { | ^~ falign.c: In function ‘malign’: falign.c:2109:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2109 | if (pf = cdiag_prev[cur_diag]) { | ^~ At top level: falign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: falign.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF g_any.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from g_any.c:89: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ g_any.c: In function ‘k_align’: g_any.c:212:12: warning: array subscript has type ‘char’ [-Wchar-subscripts] 212 | va = vv[A[i+1]]; | ~^~~~~ g_any.c:229:28: warning: array subscript has type ‘char’ [-Wchar-subscripts] 229 | if (j < J2) c = s + va[B[j+1]]; | ~^~~~~ g_any.c:319:10: warning: array subscript has type ‘char’ [-Wchar-subscripts] 319 | b2 = PP[t1][b1]; | ^ g_any.c:322:10: warning: array subscript has type ‘char’ [-Wchar-subscripts] 322 | t2 = PT[t1][b1]; | ^ g_any.c: In function ‘z_ALIGN’: g_any.c:367:7: warning: variable ‘check_score’ set but not used [-Wunused-but-set-variable] 367 | Int4 check_score; | ^~~~~~~~~~~ g_any.c: In function ‘CHECK_SCORE’: g_any.c:492:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 492 | score = vv[A[++i]][B[++j]] + score; | ~^~~~~ g_any.c:492:23: warning: array subscript has type ‘char’ [-Wchar-subscripts] 492 | score = vv[A[++i]][B[++j]] + score; | ~^~~~~ At top level: g_any.c:428:35: warning: ‘CLINE’ defined but not used [-Wunused-variable] 428 | static Char ALINE[51], BLINE[51], CLINE[51]; | ^~~~~ g_any.c:428:24: warning: ‘BLINE’ defined but not used [-Wunused-variable] 428 | static Char ALINE[51], BLINE[51], CLINE[51]; | ^~~~~ g_any.c:428:13: warning: ‘ALINE’ defined but not used [-Wunused-variable] 428 | static Char ALINE[51], BLINE[51], CLINE[51]; | ^~~~~ g_any.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: g_any.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim2.c sim2.c: In function ‘SIM2’: sim2.c:19:16: warning: unused variable ‘compB’ [-Wunused-variable] 19 | CharPtr A, B, compB = NULL; | ^~~~~ sim2.c:17:26: warning: unused variable ‘sapC’ [-Wunused-variable] 17 | SeqAlignPtr sap = NULL, sapC=NULL, out_sap, out_sapC; | ^~~~ At top level: sim2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: sim2.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from sim3.c:28: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sim3.c: In function ‘locate’: sim3.c:103:35: warning: array subscript has type ‘char’ [-Wchar-subscripts] 103 | ecode = (ecode << 2) + encoding[*p++]; | ^~~~ sim3.c:105:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] 105 | ecode = ((ecode & mask) << 2) + encoding[*p++]; | ^~~~ sim3.c:113:49: warning: array subscript has type ‘char’ [-Wchar-subscripts] 113 | ecode = (ecode << 2) + encoding[*p++]; | ^~~~ sim3.c:115:58: warning: array subscript has type ‘char’ [-Wchar-subscripts] 115 | ecode = ((ecode & mask) << 2) + encoding[*p++]; | ^~~~ sim3.c:129:49: warning: array subscript has type ‘char’ [-Wchar-subscripts] 129 | ecode = (ecode << 2) + encoding[*p++]; | ^~~~ sim3.c:133:58: warning: array subscript has type ‘char’ [-Wchar-subscripts] 133 | ecode = ((ecode & mask) << 2) + encoding[*p++]; | ^~~~ sim3.c:152:46: warning: array subscript has type ‘char’ [-Wchar-subscripts] 152 | ecode1 = ((ecode1 & mask) << 2) + encoding[*q++]; | ^~~~ sim3.c:155:58: warning: array subscript has type ‘char’ [-Wchar-subscripts] 155 | ecode = ((ecode & mask) << 2) + encoding[*p++]; | ^~~~ At top level: sim3.c:1067:16: warning: ‘is_end_seg’ defined but not used [-Wunused-function] 1067 | static Boolean is_end_seg(EditScriptPtr curr, EditScriptPtr head) | ^~~~~~~~~~ sim3.c:1056:13: warning: ‘get_current_pos’ defined but not used [-Wunused-function] 1056 | static Int4 get_current_pos(Int4Ptr pos, Int4 length) | ^~~~~~~~~~~~~~~ sim3.c:1048:13: warning: ‘get_start_pos’ defined but not used [-Wunused-function] 1048 | static Int4 get_start_pos(SeqLocPtr slp) | ^~~~~~~~~~~~~ sim3.c:806:13: warning: ‘Print_Script’ defined but not used [-Wunused-function] 806 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, CharPtr A, CharPtr B) | ^~~~~~~~~~~~ sim3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: sim3.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ sim3.c: In function ‘locate’: sim3.c:230:17: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 230 | *j2 = paired_bj+1; | ~~~~~~~~~^~ sim3.c:229:6: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 229 | *j1 = paired_fj; | ~~~~^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from sim4.c:18: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sim4.c: In function ‘sim4x’: sim4.c:630:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 630 | while(i1 = sgp->Blist[i].next) { | ^~ sim4.c: In function ‘greedy’: sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1770 | if (row == 0 && col == 0) | ^ sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1794 | if (row == 0) | ^ sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1838 | if (col == 0) | ^ sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1962 | if (row == m && col == n) | ^ sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1991 | if (row == m) | ^ sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2037 | if (col == n) | ^ sim4.c: In function ‘DISPLAY’: sim4.c:2625:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 2625 | if (a >= ALINE+50 || i >= M && j >= N) | ~~~~~~~^~~~~~~~~ At top level: sim4.c:2592:13: warning: ‘DISPLAY’ defined but not used [-Wunused-function] 2592 | static void DISPLAY(Int1 A[], Int1 B[], Int4 M, Int4 N, Int4 S[], Int4 AP, Int4 BP) | ^~~~~~~ sim4.c:2563:13: warning: ‘S2A’ defined but not used [-Wunused-function] 2563 | static void S2A(EditScriptPtr head, Int4Ptr S) | ^~~ sim4.c:2499:13: warning: ‘Print_Script’ defined but not used [-Wunused-function] 2499 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, data_t *data) | ^~~~~~~~~~~~ sim4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: sim4.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ sim4.c: In function ‘locate’: sim4.c:2919:19: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2919 | *j2 = paired_bj + 1; | ~~~~~~~~~~^~~ sim4.c:2918:7: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2918 | *j1 = paired_fj; | ~~~~^~~~~~~~~~~ sim4.c: In function ‘sim4x’: sim4.c:2112:37: warning: ‘forth’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2112 | if (m-min_row[back]>=max_row[forth]) { | ^ sim4.c:1609:18: note: ‘forth’ was declared here 1609 | Int4 back, forth; /* backward and forward limits at exit */ | ^~~~~ sim4.c:2112:22: warning: ‘back’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2112 | if (m-min_row[back]>=max_row[forth]) { | ^ sim4.c:1609:12: note: ‘back’ was declared here 1609 | Int4 back, forth; /* backward and forward limits at exit */ | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF simutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from simutil.c:103: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ simutil.c: In function ‘make_align’: simutil.c:495:9: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 495 | Uint1 strand; | ^~~~~~ At top level: simutil.c:848:16: warning: ‘is_alu_seq’ defined but not used [-Wunused-function] 848 | static Boolean is_alu_seq(CharPtr name) | ^~~~~~~~~~ simutil.c:814:16: warning: ‘re_cal_score’ defined but not used [-Wunused-function] 814 | static FloatHi re_cal_score(RecordEndsPtr o_rep, RecordEndsPtr n_rep) | ^~~~~~~~~~~~ simutil.c:344:17: warning: ‘convert’ defined but not used [-Wunused-function] 344 | static ScorePtr convert(Int4Ptr x, Int4Ptr y, Int4Ptr start, Int4Ptr length, Int4 n, SeqLocPtr locx, SeqLocPtr locy, Int2Ptr numseg, FloatHiPtr SegScores) | ^~~~~~~ simutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: simutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ simutil.c: In function ‘sort_align_list’: simutil.c:602:20: warning: ‘score2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 602 | if (score2 > score1) { /* swap */ | ^ simutil.c:602:20: warning: ‘score1’ may be used uninitialized in this function [-Wmaybe-uninitialized] simutil.c: In function ‘get_top_K_alignment’: simutil.c:659:16: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 659 | if (score < cut_off) break; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF slist.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/list.h:56, from slist.c:101: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: slist.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sec.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/simutil.h:77, from sec.c:67: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sec.c: In function ‘Region’: sec.c:268:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 268 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:268:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 268 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:292:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 292 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:292:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 292 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:321:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 321 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:321:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 321 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:345:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 345 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:345:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 345 | ext_score += V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:428:40: warning: array subscript has type ‘char’ [-Wchar-subscripts] 428 | diag_score = diag_score + V[seq1[i]][seq2[j]]; | ~~~~^~~ sec.c:428:49: warning: array subscript has type ‘char’ [-Wchar-subscripts] 428 | diag_score = diag_score + V[seq1[i]][seq2[j]]; | ~~~~^~~ At top level: sec.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: sec.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ sec.c: In function ‘Region’: sec.c:504:11: warning: ‘old_l’ may be used uninitialized in this function [-Wmaybe-uninitialized] 504 | LB[i] = old_l; | ~~~~~~^~~~~~~ sec.c:72:37: warning: ‘ppj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 72 | #define Min(x,y) ((x) <= (y) ? (x) : (y)) | ^ sec.c:172:20: note: ‘ppj’ was declared here 172 | Int4 pi, pj, ppi, ppj; | ^~~ sec.c:172:15: warning: ‘ppi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 172 | Int4 pi, pj, ppi, ppj; | ^~~ sec.c:172:7: warning: ‘pi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 172 | Int4 pi, pj, ppi, ppj; | ^~ sec.c:72:37: warning: ‘ej’ may be used uninitialized in this function [-Wmaybe-uninitialized] 72 | #define Min(x,y) ((x) <= (y) ? (x) : (y)) | ^ sec.c:163:19: note: ‘ej’ was declared here 163 | Int4 bi, bj, ei, ej, t; | ^~ sec.c:163:15: warning: ‘ei’ may be used uninitialized in this function [-Wmaybe-uninitialized] 163 | Int4 bi, bj, ei, ej, t; | ^~ sec.c:71:37: warning: ‘bj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 71 | #define Max(x,y) ((x) >= (y) ? (x) : (y)) | ^ sec.c:163:11: note: ‘bj’ was declared here 163 | Int4 bi, bj, ei, ej, t; | ^~ sec.c:462:16: warning: ‘bi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 462 | MemFree(LB+bi); | ^ sec.c:463:16: warning: ‘RB’ may be used uninitialized in this function [-Wmaybe-uninitialized] 463 | MemFree(RB+bi); | ~~^~~ sec.c:462:16: warning: ‘LB’ may be used uninitialized in this function [-Wmaybe-uninitialized] 462 | MemFree(LB+bi); | ~~^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tfuns.c tfuns.c: In function ‘find_orf’: tfuns.c:866:26: warning: unused variable ‘into’ [-Wunused-variable] 866 | IntFuzzPtr infrom=NULL, into=NULL; | ^~~~ tfuns.c:866:13: warning: unused variable ‘infrom’ [-Wunused-variable] 866 | IntFuzzPtr infrom=NULL, into=NULL; | ^~~~~~ At top level: tfuns.c:977:13: warning: ‘find_orf_from_circle’ defined but not used [-Wunused-function] 977 | static void find_orf_from_circle (SeqPortPtr spp, Boolean flagIsCircle, | ^~~~~~~~~~~~~~~~~~~~ tfuns.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: tfuns.c,v 6.17 2015/08/17 17:15:09 bollin Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF toasn3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from toasn3.c:10: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ toasn3.c: In function ‘FindOrg’: toasn3.c:1444:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 1444 | Int4 len; | ^~~ toasn3.c: In function ‘CheckQualsWithComm’: toasn3.c:1731:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable] 1731 | OrgRefPtr orp; | ^~~ toasn3.c: In function ‘CheckQuals’: toasn3.c:1768:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable] 1768 | OrgRefPtr orp; | ^~~ toasn3.c: In function ‘CountSourceFeat’: toasn3.c:2570:13: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 2570 | Pointer pnt; | ^~~ toasn3.c:2561:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 2561 | ValNodePtr vnp; | ^~~ toasn3.c: In function ‘TASNTrimInternalSemicolons’: toasn3.c:4155:12: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 4155 | CharPtr tmp; | ^~~ toasn3.c: In function ‘ImpFeatToProtRef’: toasn3.c:4861:13: warning: variable ‘lfree’ set but not used [-Wunused-but-set-variable] 4861 | Boolean lfree = FALSE, partial5, partial3; | ^~~~~ toasn3.c: In function ‘RemovePeptideImpFeats’: toasn3.c:5160:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable] 5160 | ImpFeatPtr ifp; | ^~~ At top level: toasn3.c:1711:16: warning: ‘GetQualValue’ defined but not used [-Wunused-function] 1711 | static CharPtr GetQualValue(GBQualPtr gbqual, CharPtr qual) | ^~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from toasn3.c:19: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ toasn3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: toasn3.c,v 6.150 2016/11/02 23:36:09 kans Exp $"; | ^~~~~ toasn3.c: In function ‘CdEndCheck’: toasn3.c:4666:16: warning: ‘m_oldto’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4666 | msip->to = m_oldto; | ~~~~~~~~~^~~~~~~~~ toasn3.c:4665:18: warning: ‘m_oldfrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4665 | msip->from = m_oldfrom; | ~~~~~~~~~~~^~~~~~~~~~~ toasn3.c:4663:13: warning: ‘oldto’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4663 | sip->to = oldto; | ~~~~~~~~^~~~~~~ toasn3.c:4662:15: warning: ‘oldfrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4662 | sip->from = oldfrom; | ~~~~~~~~~~^~~~~~~~~ toasn3.c: In function ‘FixNucProtSet’: toasn3.c:2205:21: warning: ‘bseg’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2205 | bseg->annot = sap; | ~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF toporg.c toporg.c: In function ‘ChkSegset’: toporg.c:64:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable] 64 | Boolean is_org = FALSE, is_modif = FALSE, is_title = FALSE; | ^~~~~~~~ toporg.c:63:17: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable] 63 | OrgRefPtr orp; | ^~~ toporg.c:60:17: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 60 | Pointer pnt; | ^~~ toporg.c:55:17: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 55 | ValNodePtr vnp = NULL, set_vnp = NULL, upd_date_vnp = NULL; | ^~~ toporg.c: In function ‘ChkNucProt’: toporg.c:608:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable] 608 | Boolean is_org = FALSE, is_modif = FALSE, is_title = FALSE; | ^~~~~~~~ toporg.c: In function ‘StripBSfromParts’: toporg.c:1330:17: warning: variable ‘empty’ set but not used [-Wunused-but-set-variable] 1330 | Boolean empty; | ^~~~~ toporg.c:1329:17: warning: variable ‘bsmp’ set but not used [-Wunused-but-set-variable] 1329 | BSMapPtr bsmp; | ^~~~ toporg.c:1328:29: warning: variable ‘set_vnp’ set but not used [-Wunused-but-set-variable] 1328 | ValNodePtr descr, vnp, set_vnp; | ^~~~~~~ toporg.c: In function ‘MapsToGenref’: toporg.c:2021:17: warning: variable ‘loc’ set but not used [-Wunused-but-set-variable] 2021 | SeqLocPtr loc; | ^~~ toporg.c:2016:17: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable] 2016 | ValNodePtr descr = NULL, head, last, vnp; | ^~~~~ toporg.c: In function ‘FindOldLineage’: toporg.c:2606:17: warning: variable ‘lineage’ set but not used [-Wunused-but-set-variable] 2606 | CharPtr lineage; | ^~~~~~~ toporg.c: In function ‘ArePubsMergeableForFig’: toporg.c:4796:36: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses] 4796 | || !cgp_fig->serial_number != cgp_nofig->serial_number) { | ^~ toporg.c:4796:12: note: add parentheses around left hand side expression to silence this warning 4796 | || !cgp_fig->serial_number != cgp_nofig->serial_number) { | ^~~~~~~~~~~~~~~~~~~~~~~ | ( ) toporg.c: In function ‘StripBadTitleFromProteinProducts’: toporg.c:5311:22: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable] 5311 | Uint1 tech; | ^~~~ toporg.c: In function ‘FindPubWithFig’: toporg.c:5647:10: warning: variable ‘a’ set but not used [-Wunused-but-set-variable] 5647 | Int4 a = 0; | ^ toporg.c: In function ‘AddMissingGeneXref’: toporg.c:5955:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 5955 | Int2 count; | ^~~~~ toporg.c: In function ‘ConvertSegSetToDeltaSeqInt’: toporg.c:7093:18: warning: unused variable ‘str’ [-Wunused-variable] 7093 | CharPtr str, ttl = NULL; | ^~~ toporg.c:7086:18: warning: unused variable ‘ovp’ [-Wunused-variable] 7086 | ObjValNodePtr ovp; | ^~~ At top level: toporg.c:5475:13: warning: ‘SynchronizePseudogenesProc’ defined but not used [-Wunused-function] 5475 | static void SynchronizePseudogenesProc ( | ^~~~~~~~~~~~~~~~~~~~~~~~~~ toporg.c:3119:13: warning: ‘BarCodeTechToKeyword’ defined but not used [-Wunused-function] 3119 | static void BarCodeTechToKeyword (BioseqPtr bsp, Pointer userdata) | ^~~~~~~~~~~~~~~~~~~~ toporg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: toporg.c,v 6.251 2016/11/02 23:36:10 kans Exp $"; | ^~~~~ toporg.c: In function ‘MergeEquivCitSubs’: toporg.c:3905:7: warning: ‘csp1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3905 | if (DateMatch (csp1->date, csp2->date, FALSE) != 0) return FALSE; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ toporg.c:3925:18: note: ‘csp1’ was declared here 3925 | CitSubPtr csp1, csp2; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pobutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/pobutil.h:7, from pobutil.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pobutil.c: In function ‘build_repeat_feat’: pobutil.c:187:7: warning: unused variable ‘c’ [-Wunused-variable] 187 | Char c='%'; | ^ pobutil.c: In function ‘merge_StdSeg’: pobutil.c:1033:7: warning: variable ‘start_1’ set but not used [-Wunused-but-set-variable] 1033 | Int4 start_1, stop_1, start_2, stop_2; | ^~~~~~~ pobutil.c:1031:7: warning: unused variable ‘overlap’ [-Wunused-variable] 1031 | Int4 overlap = -1; | ^~~~~~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/pobutil.h:7, from pobutil.c:3: pobutil.c: In function ‘FindHumanRepeats’: ../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] 191 | #define Nlm_MemSet memset | ^~~~~~ ../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’ 210 | #define MemSet Nlm_MemSet | ^~~~~~~~~~ pobutil.c:2380:2: note: in expansion of macro ‘MemSet’ 2380 | MemSet((Pointer) (&tmp), sizeof(ValNode), 0); | ^~~~~~ ../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] 191 | #define Nlm_MemSet memset | ^~~~~~ ../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’ 210 | #define MemSet Nlm_MemSet | ^~~~~~~~~~ pobutil.c:2381:2: note: in expansion of macro ‘MemSet’ 2381 | MemSet((Pointer) (&si), sizeof(SeqInt), 0); | ^~~~~~ pobutil.c: In function ‘AluFeat’: pobutil.c:2431:10: warning: variable ‘my_userdata’ set but not used [-Wunused-but-set-variable] 2431 | Pointer my_userdata; | ^~~~~~~~~~~ At top level: pobutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: pobutil.c,v 6.10 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF stsutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from stsutil.c:88: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ stsutil.c: In function ‘InitSTSSearch_r’: stsutil.c:270:10: warning: unused variable ‘StsCount’ [-Wunused-variable] 270 | Int4 StsCount=0; | ^~~~~~~~ stsutil.c: In function ‘GetSTSEntry’: stsutil.c:635:13: warning: variable ‘p’ set but not used [-Wunused-but-set-variable] 635 | CharPtr p; | ^ stsutil.c: In function ‘STSCalculateHash’: stsutil.c:753:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] 753 | if ((j = HashCode[*p++]) < 0) | ^~~~ stsutil.c: In function ‘STSReverse’: stsutil.c:771:29: warning: array subscript has type ‘char’ [-Wchar-subscripts] 771 | if ((*t = ComplCode[*s]) == 0) | ^~ stsutil.c: In function ‘InitHashTable’: stsutil.c:910:21: warning: variable ‘sts_uid’ set but not used [-Wunused-but-set-variable] 910 | CharPtr gb_uid, sts_uid; | ^~~~~~~ stsutil.c:910:13: warning: variable ‘gb_uid’ set but not used [-Wunused-but-set-variable] 910 | CharPtr gb_uid, sts_uid; | ^~~~~~ stsutil.c:908:23: warning: variable ‘gi’ set but not used [-Wunused-but-set-variable] 908 | Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0; | ^~ stsutil.c:908:10: warning: variable ‘id_sts’ set but not used [-Wunused-but-set-variable] 908 | Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0; | ^~~~~~ stsutil.c:907:23: warning: unused variable ‘error’ [-Wunused-variable] 907 | Int4 LineLength, error= FALSE; | ^~~~~ At top level: stsutil.c:892:13: warning: ‘STSHashInitFree’ defined but not used [-Wunused-function] 892 | static void STSHashInitFree(STSHashInitPtr sts) | ^~~~~~~~~~~~~~~ stsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: stsutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ stsutil.c: In function ‘GetSTSEntry’: stsutil.c:654:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 654 | TmpVal[j][k-1] = NULLB; stsutil.c:633:10: note: at offset 0 to object ‘TmpVal’ with size 1152 declared here 633 | Char TmpVal[MAXDBPAR][128]; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggadj.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from suggadj.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ suggadj.c: In function ‘score_possible_splice_sites’: suggadj.c:874:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 874 | score = ( vx[seq_or_rev[putative_donor]]==3) ?10:0; | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c:875:24: warning: array subscript has type ‘char’ [-Wchar-subscripts] 875 | score += (vx[seq_or_rev[putative_acceptor]]==3 )?10:0; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ suggadj.c:878:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 878 | score += ( vx[seq_or_rev[putative_donor+1]]==0 )?3:0; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ suggadj.c:879:25: warning: array subscript has type ‘char’ [-Wchar-subscripts] 879 | score += ( vx[seq_or_rev[putative_acceptor-1]]==2 )?3:0; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ suggadj.c: In function ‘check_split_codon’: suggadj.c:985:40: warning: array subscript has type ‘char’ [-Wchar-subscripts] 985 | val_assuming_1_from_left= vx[seq_or_rev[left_ends+1]] * 16 + | ~~~~~~~~~~^~~~~~~~~~~~~ suggadj.c:986:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 986 | vx[seq_or_rev[right_starts-2]]*4+ | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c:987:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 987 | vx[seq_or_rev[right_starts-1]]; | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c:998:40: warning: array subscript has type ‘char’ [-Wchar-subscripts] 998 | val_assuming_2_from_left= vx[seq_or_rev[left_ends+1]] * 16 + | ~~~~~~~~~~^~~~~~~~~~~~~ suggadj.c:999:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 999 | vx[seq_or_rev[left_ends+2]] * 4 + | ~~~~~~~~~~^~~~~~~~~~~~~ suggadj.c:1000:15: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1000 | vx[seq_or_rev[right_starts-1]]; | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c: In function ‘overlapping_fixer’: suggadj.c:1370:29: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1370 | test_val = vx[seq_or_rev[left_exon_ends]]*16 + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ suggadj.c:1371:19: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1371 | vx[seq_or_rev[right_exon_starts-1]]; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ suggadj.c:1373:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1373 | test_val += vx[seq_or_rev[right_exon_starts-2]]*4; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ suggadj.c:1375:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1375 | test_val += vx[seq_or_rev[left_exon_ends+1]]*4; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ At top level: suggadj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: suggadj.c,v 6.3 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggest.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from suggest.c:199: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ suggest.c: In function ‘get_frames’: suggest.c:458:14: warning: array subscript has type ‘char’ [-Wchar-subscripts] 458 | val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]]; | ~^~~ suggest.c:458:28: warning: array subscript has type ‘char’ [-Wchar-subscripts] 458 | val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]]; | ~^~~ At top level: suggest.c:1331:13: warning: ‘ReportSuggestIntervalsError’ defined but not used [-Wunused-function] 1331 | static void ReportSuggestIntervalsError (SeqRecPtr srp, CharPtr gen_txt) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ suggest.c:1222:1: warning: ‘fprintf_m_stk_entry’ defined but not used [-Wunused-function] 1222 | fprintf_m_stk_entry(FILE *fp, Int4 index, char *msg) | ^~~~~~~~~~~~~~~~~~~ suggest.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: suggest.c,v 6.14 2009/04/10 17:22:14 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggslp.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from suggslp.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ suggslp.c: In function ‘MakeReverseSequence’: suggslp.c:190:12: warning: array subscript has type ‘char’ [-Wchar-subscripts] 190 | *t++ = r[*--s]; | ^~~~ At top level: suggslp.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: suggslp.c,v 6.6 2009/04/16 18:35:41 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blast.c:2572: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast.c: In function ‘BlastReevaluateWithAmbiguities’: blast.c:2954:24: warning: variable ‘query_end’ set but not used [-Wunused-but-set-variable] 2954 | Uint1Ptr query_start, query_end, subject_real_start=NULL; | ^~~~~~~~~ blast.c:2949:16: warning: variable ‘hspcnt’ set but not used [-Wunused-but-set-variable] 2949 | Int4 context, hspcnt, hspcnt_max, index, index1, status; | ^~~~~~ blast.c: In function ‘BlastGetVirtualOIDList’: blast.c:3179:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3179 | if (virtual_oidlist = rdfp_chain->oidlist) { | ^~~~~~~~~~~~~~~ blast.c: In function ‘BlastGetDbChunk’: blast.c:3210:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 3210 | if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) { | ^~~~~~~~~~~~~~~ blast.c: In function ‘BlastCreateQueryDNAP’: blast.c:4100:11: warning: variable ‘strand_option’ set but not used [-Wunused-but-set-variable] 4100 | Uint1 strand_option; | ^~~~~~~~~~~~~ blast.c: In function ‘BlastReapPartialHitlistByEvalue’: blast.c:6486:10: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 6486 | else | ^~~~ blast.c:6490:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 6490 | if( !search->mult_queries ) | ^~ blast.c: In function ‘BlastWordFinder_contig’: blast.c:7094:16: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable] 7094 | register Int4 bits_to_shift, min_diag_length, min_diag_mask; | ^~~~~~~~~~~~~ blast.c: In function ‘BlastWordExtend’: blast.c:7835:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable] 7835 | BLAST_Score leftsum, rightsum, rightscore, leftscore; | ^~~~~~~~~ blast.c: In function ‘BlastNewWordExtend’: blast.c:7982:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable] 7982 | BLAST_Score leftsum, rightsum, rightscore, leftscore; | ^~~~~~~~~ blast.c: In function ‘BlastNtWordFinder_mh’: blast.c:8843:23: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable] 8843 | register Int4 bits_to_shift, min_diag_length, min_diag_mask; | ^~~~~~~~~~~~~ blast.c:8842:103: warning: variable ‘compression_factor’ set but not used [-Wunused-but-set-variable] 8842 | Int4 s_pos, q_off, s_off, offset, virtual_wordsize, wordsize, compressed_wordsize, compression_factor; | ^~~~~~~~~~~~~~~~~~ blast.c: In function ‘BlastNtWordFinder’: blast.c:9076:14: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable] 9076 | Int4 bits_to_shift, min_diag_length, min_diag_mask; | ^~~~~~~~~~~~~ blast.c: In function ‘BlastSaveCurrentHitlist’: blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 10115 | if( hitlist_max > 1 ) | ^ blast.c:9785:7: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable] 9785 | Int4 query_length; | ^~~~~~~~~~~~ blast.c: In function ‘SumHSPEvalue’: blast.c:10588:9: warning: variable ‘gap_size’ set but not used [-Wunused-but-set-variable] 10588 | Int4 gap_size, num, subject_length; | ^~~~~~~~ blast.c: In function ‘link_hsps’: blast.c:11267:10: warning: variable ‘frame_change’ set but not used [-Wunused-but-set-variable] 11267 | Boolean frame_change, linked_set, ignore_small_gaps; | ^~~~~~~~~~~~ At top level: blast.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: blast.c,v 6.451 2008/01/25 21:15:22 bealer Exp $"; | ^~~~~ blast.c: In function ‘blastMergeFilterLocs’: blast.c:3985:16: warning: ‘dup_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3985 | dup_slp = (SeqLocPtr) dup_slp->data.ptrvalue; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast.c: In function ‘BlastLinkHsps’: blast.c:10455:41: warning: ‘orig_hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 10455 | search->current_hitlist = orig_hitlist; | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastutl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blastutl.c:1836: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blastutl.c: In function ‘BlastSeqLocFilterEx’: blastutl.c:7554:11: warning: statement with no effect [-Wunused-value] 7554 | stop_timer("after repeat filtering"); | ^ blastutl.c: In function ‘BlastPreliminaryGappedScore’: blastutl.c:9853:30: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable] 9853 | Int4 index, max_offset = 0, query_length, min_score; | ^~~~~~~~~~~~ blastutl.c: In function ‘BlastGetGappedScore’: blastutl.c:10282:11: warning: statement with no effect [-Wunused-value] 10282 | stop_timer("after BlastGappedScoreInternal"); | ^ At top level: blastutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blastutl.c,v 6.472 2010/12/10 18:47:12 madden Exp $"; | ^~~~~ blastutl.c: In function ‘BlastNtFindWords’: blastutl.c:11445:10: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11445 | end = MIN(end, len-initial_wordsize); blastutl.c: In function ‘BlastFindWords’: blastutl.c:11623:8: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11623 | stop = MIN(stop, len); blastutl.c:11711:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11711 | start_score2 += matrix[(Int4) *(str+index2)][*(words+index2)]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:11704:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11704 | start_score = second_score+first_score; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:11695:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11695 | diff2 += diff; | ~~~~~~^~~~~~~ blastutl.c: In function ‘BlastNewFindWords_Old’: blastutl.c:11931:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11931 | start_score2 += MtrxScorePosSearch(search->sbp, blastutl.c:11924:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11924 | start_score = second_score+first_score; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:11915:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11915 | diff2 += diff; | ~~~~~~^~~~~~~ blastutl.c: In function ‘BlastNewFindWordsEx’: blastutl.c:12124:30: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12124 | start_score2 += posMatrix[offset+index2][*(words+index2)]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:12118:29: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12118 | start_score = second_score + first_score; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:12110:23: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 12110 | diff2 += diff; | ~~~~~~^~~~~~~ blastutl.c: In function ‘RealBlastGetGappedAlignmentTraceback’: blastutl.c:9008:42: warning: ‘seqalign_array’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9008 | SeqAlignPtr seqalign, seqalign_var, *seqalign_array; | ^~~~~~~~~~~~~~ blastutl.c: In function ‘SumBlastGetGappedAlignmentEx’: blastutl.c:9670:33: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9670 | HeapSort(hsp_array+start,(stop-start),sizeof(BLAST_HSPPtr), score_compare_hsps); | ~~~~~^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastool.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blastool.c:946: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blastool.c: In function ‘BlastScaleMatrix’: blastool.c:3032:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 3032 | else | ^~~~ blastool.c:3035:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 3035 | if (new_lambda > lambda) | ^~ blastool.c: In function ‘OOFBlastHSPGetNumIdentical’: blastool.c:6081:9: warning: variable ‘context’ set but not used [-Wunused-but-set-variable] 6081 | Int2 context; | ^~~~~~~ At top level: blastool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blastool.c,v 6.292 2007/03/15 20:39:17 madden Exp $"; | ^~~~~ blastool.c: In function ‘BlastCreateVirtualOIDList’: blastool.c:2556:24: warning: ‘gilist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2556 | BlastDoubleInt4Ptr gilist, real_gilist = NULL, *real_gilist_ptrs = NULL; | ^~~~~~ blastool.c: In function ‘BlastInsertList2Heap’: blastool.c:3595:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3595 | context = hsp->query_offset / query_length; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ blastool.c: In function ‘BlastFreeHeap’: blastool.c:3687:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3687 | context = hsp->query_offset / query_length; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ blastool.c: In function ‘BLASTFilterOverlapRegions’: blastool.c:4531:24: warning: ‘next_tail’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4531 | tail->next = seqalign; | ~~~~~~~~~~~^~~~~~~~~~ blastool.c: In function ‘BlastPrintAlignInfo’: blastool.c:4800:23: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4800 | sap->next = SeqAlignNew(); | ~~~~~~~~~~^~~~~~~~~~~~~~~ blastool.c: In function ‘MegaBlastPrintAlignInfo’: blastool.c:963:17: warning: ‘subject_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 963 | #define fprintf blastool_fprintf | ^~~~~~~~~~~~~~~~ blastool.c:5046:30: note: ‘subject_seq_buffer’ was declared here 5046 | CharPtr query_seq_buffer, subject_seq_buffer; | ^~~~~~~~~~~~~~~~~~ blastool.c:963:17: warning: ‘query_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 963 | #define fprintf blastool_fprintf | ^~~~~~~~~~~~~~~~ blastool.c:5046:12: note: ‘query_seq_buffer’ was declared here 5046 | CharPtr query_seq_buffer, subject_seq_buffer; | ^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastconcat.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blastconcat.c:89: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blastconcat.c: In function ‘BlastMakeFakeBspConcat’: blastconcat.c:648:12: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable] 648 | SeqLocPtr slp = NULL; | ^~~ At top level: blastconcat.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blastconcat.c,v 1.14 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF splutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from splutil.c:52: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ splutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: splutil.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gapxdrop.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/gapxdrop.h:150, from gapxdrop.c:368: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gapxdrop.c: In function ‘ALIGN_EX’: gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 864 | if (s == 1) | ^ gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 867 | if (s == 2) | ^ At top level: gapxdrop.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: gapxdrop.c,v 6.76 2003/11/07 21:52:52 dondosha Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg0.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg0.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg0.c: In function ‘g_band0_align’: bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 273 | if(leftd >= 1) | ^ At top level: bandalg0.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg0.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg1.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg1.c: In function ‘gband_quadratic’: bandalg1.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 54 | Int4 c, i, j; | ^ bandalg1.c: In function ‘g_band1_align’: bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 205 | if(leftd >= 1) | ^ At top level: bandalg1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg1.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg2.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg2.c: In function ‘gb_linear_align’: bandalg2.c:208:24: warning: variable ‘misma’ set but not used [-Wunused-but-set-variable] 208 | register Int4 match, misma; | ^~~~~ bandalg2.c:208:17: warning: variable ‘match’ set but not used [-Wunused-but-set-variable] 208 | register Int4 match, misma; | ^~~~~ bandalg2.c:207:18: warning: variable ‘AA’ set but not used [-Wunused-but-set-variable] 207 | register Uint1 AA; | ^~ At top level: bandalg2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg2.c,v 6.5 2003/05/30 17:25:35 coulouri Exp $"; | ^~~~~ bandalg2.c: In function ‘gb_linear_align’: bandalg2.c:577:12: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 577 | _INS(N - Y); | ^ In file included from bandalg2.c:36: ../include/bandalgn.h:140:76: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 140 | data->last = (data->last < 0) ? (data->sapp[-1] -= (k)) : (*data->sapp++ = -(k)); | ^ bandalg2.c:202:35: note: ‘X’ was declared here 202 | Int4 rmid, k =0, l=0, r, v, kt, X, Y; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg3.c:37: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg3.c: In function ‘gband_linear_qgap’: bandalg3.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 54 | Int4 c, i, j; | ^ At top level: bandalg3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg3.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ bandalg3.c: In function ‘gband_linear_qgap’: bandalg3.c:314:41: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 314 | else if(Y != rightd) _INS(rightd-Y) | ^ bandalg3.c:185:28: note: ‘Y’ was declared here 185 | Int4 ib, best=MININT, X, Y; | ^ bandalg3.c:313:21: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 313 | if(X != M) _DEL(M - X) | ^ bandalg3.c:185:25: note: ‘X’ was declared here 185 | Int4 ib, best=MININT, X, Y; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg4.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg4.c:37: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg4.c: In function ‘g_band4_align_small’: bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 826 | if (e == 1) | ^ bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 829 | if (e == 2) | ^ bandalg4.c:630:8: warning: variable ‘band’ set but not used [-Wunused-but-set-variable] 630 | Int4 band, j; | ^~~~ At top level: bandalg4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg4.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ bandalg4.c: In function ‘g_band4_align’: bandalg4.c:534:22: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 534 | if(X != M || Y != N) regA = regB = 1; | ~~^~~~ bandalg4.c:534:12: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 534 | if(X != M || Y != N) regA = regB = 1; | ~~^~~~ bandalg4.c:562:7: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] 562 | g_band4_align(A, B, r - 1, r + rmid, rmid + 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 | MIN(up, r + rmid), tb, 1, legA, legB, 1, 1, data); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bandalg4.c:857:37: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 857 | else if (Y != rightd) _INS(rightd - Y); | ^ bandalg4.c:640:28: note: ‘Y’ was declared here 640 | Int4 ib, best=MININT, X, Y; | ^ In file included from bandalg4.c:37: ../include/bandalgn.h:140:76: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 140 | data->last = (data->last < 0) ? (data->sapp[-1] -= (k)) : (*data->sapp++ = -(k)); | ^ bandalg4.c:640:25: note: ‘X’ was declared here 640 | Int4 ib, best=MININT, X, Y; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg5.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/bandalgn.h:73, from bandalg5.c:36: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalg5.c: In function ‘gband_q3gap’: bandalg5.c:56:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 56 | Int4 c, i, j; | ^ bandalg5.c: In function ‘g_band5_align’: bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 292 | if (e == 1) | ^ bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 295 | if (e == 2) | ^ At top level: bandalg5.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalg5.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ bandalg5.c: In function ‘gband_q3gap’: bandalg5.c:320:32: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized] 320 | if (Y != rightd) _INS(rightd - Y); | ^ bandalg5.c:146:28: note: ‘Y’ was declared here 146 | Int4 ib, best=MININT, X, Y; | ^ bandalg5.c:319:22: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized] 319 | if (X != M) _DEL(M - X); | ^ bandalg5.c:146:25: note: ‘X’ was declared here 146 | Int4 ib, best=MININT, X, Y; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalgn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from bandalgn.c:118: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bandalgn.c: In function ‘ExtendSeqAlign’: bandalgn.c:1113:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable] 1113 | DenseDiagPtr ddp; | ^~~ bandalgn.c: In function ‘CC_ExtendSeqAlign’: bandalgn.c:1188:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable] 1188 | DenseDiagPtr ddp; | ^~~ At top level: bandalgn.c:699:14: warning: ‘HSblastna_to_ncbi4na’ defined but not used [-Wunused-variable] 699 | static Uint1 HSblastna_to_ncbi4na[] = { 1, /* A, 0 */ | ^~~~~~~~~~~~~~~~~~~~ bandalgn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bandalgn.c,v 6.17 2003/05/30 17:25:36 coulouri Exp $"; | ^~~~~ bandalgn.c: In function ‘LocalBandToEditBlock’: bandalgn.c:463:20: warning: ‘edit_block’ may be used uninitialized in this function [-Wmaybe-uninitialized] 463 | lbsp->edit_block = edit_block; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ bandalgn.c: In function ‘SetLowUpFromBlast’: bandalgn.c:1053:7: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1053 | if (maxsc < val) { | ^ bandalgn.c:1060:7: warning: ‘alnlen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1060 | if (maxlen < alnlen) { | ^ bandalgn.c:1070:9: warning: ‘maxdi_up’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1070 | maxy = MAX(maxy,maxdi_up); bandalgn.c:1069:9: warning: ‘mindi_low’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1069 | miny = MIN(miny,mindi_low); bandalgn.c:1055:10: warning: ‘maxdi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1055 | maxy = maxdi + width; | ~~~~~^~~~~~~~~~~~~~~ bandalgn.c:1056:10: warning: ‘mindi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1056 | miny = mindi - width; | ~~~~~^~~~~~~~~~~~~~~ bandalgn.c: In function ‘GetAlignExtremes’: bandalgn.c:1309:7: warning: ‘y2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1309 | *yy2 = y2; | ~~~~~^~~~ bandalgn.c:1308:7: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1308 | *yy1 = y1; | ~~~~~^~~~ bandalgn.c:1307:7: warning: ‘x2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1307 | *xx2 = x2; | ~~~~~^~~~ bandalgn.c:1306:7: warning: ‘x1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1306 | *xx1 = x1; | ~~~~~^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastkar.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blastkar.c:648: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blastkar.c:2373:25: warning: ‘Altschul_prob’ defined but not used [-Wunused-variable] 2373 | static BLAST_LetterProb Altschul_prob[] = { | ^~~~~~~~~~~~~ blastkar.c:2347:25: warning: ‘Dayhoff_prob’ defined but not used [-Wunused-variable] 2347 | static BLAST_LetterProb Dayhoff_prob[] = { | ^~~~~~~~~~~~ blastkar.c:1121:13: warning: ‘blosum62_20_prefs’ defined but not used [-Wunused-variable] 1121 | static Int4 blosum62_20_prefs[BLOSUM62_20_VALUES_MAX] = { | ^~~~~~~~~~~~~~~~~ blastkar.c:1053:21: warning: ‘blosum62_20_values’ defined but not used [-Wunused-variable] 1053 | static Nlm_FloatHi blosum62_20_values[BLOSUM62_20_VALUES_MAX][8] = { | ^~~~~~~~~~~~~~~~~~ blastkar.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blastkar.c,v 6.115 2006/12/14 17:08:19 madden Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF actutils.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/actutils.h:103, from actutils.c:232: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ actutils.c: In function ‘SlideToHit’: actutils.c:346:23: warning: variable ‘done’ set but not used [-Wunused-but-set-variable] 346 | Boolean inIsland, done; | ^~~~ actutils.c:346:13: warning: variable ‘inIsland’ set but not used [-Wunused-but-set-variable] 346 | Boolean inIsland, done; | ^~~~~~~~ actutils.c: In function ‘ResolveSpinConflict’: actutils.c:1484:35: warning: unused variable ‘row2_conflict’ [-Wunused-variable] 1484 | Boolean row1_conflict = FALSE, row2_conflict = FALSE; | ^~~~~~~~~~~~~ actutils.c:1484:12: warning: unused variable ‘row1_conflict’ [-Wunused-variable] 1484 | Boolean row1_conflict = FALSE, row2_conflict = FALSE; | ^~~~~~~~~~~~~ actutils.c: In function ‘ACT_FindBestAlnByDotPlot’: actutils.c:2002:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 2002 | Uint1 strand; | ^~~~~~ actutils.c:2001:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable] 2001 | Int4 start2; | ^~~~~~ actutils.c:2000:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable] 2000 | Int4 start1; | ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from actutils.c:232: actutils.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ actutils.c:3132:13: warning: ‘DumpAlignments’ defined but not used [-Wunused-function] 3132 | static void DumpAlignments (SeqAlignPtr salp) | ^~~~~~~~~~~~~~ actutils.c:2927:13: warning: ‘MapBioseqToBioseqSpecial’ defined but not used [-Wunused-function] 2927 | static Int4 MapBioseqToBioseqSpecial(SeqAlignPtr sap, Int4 begin, Int4 fin, Int4 pos, Int4 which_end) | ^~~~~~~~~~~~~~~~~~~~~~~~ actutils.c:1654:16: warning: ‘SpinsConflict’ defined but not used [-Wunused-function] 1654 | static Boolean SpinsConflict (SQN_nPtr spin1, SQN_nPtr spin2, Int4 fuzz, Int4 strand) | ^~~~~~~~~~~~~ actutils.c:1392:13: warning: ‘am_fix_strand’ defined but not used [-Wunused-function] 1392 | static void am_fix_strand(SeqAlignPtr sap, Uint1 strand1, Uint1 strand2) | ^~~~~~~~~~~~~ actutils.c:1375:16: warning: ‘am_isa_gap’ defined but not used [-Wunused-function] 1375 | static Boolean am_isa_gap(Int4 start, Int4 prevstop, Uint1 strand) | ^~~~~~~~~~ actutils.c:749:13: warning: ‘StateTableSearch’ defined but not used [-Wunused-function] 749 | static void StateTableSearch (TextFsaPtr tbl, CharPtr txt, Int4Ptr state, Int4 pos, ACT_sitelistPtr PNTR asp_prev, ACT_sitelistPtr PNTR asp_head) | ^~~~~~~~~~~~~~~~ actutils.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: actutils.c,v 6.56 2008/10/22 17:19:22 bollin Exp $"; | ^~~~~ In file included from ../include/ncbi.h:59, from ../include/actutils.h:103, from actutils.c:232: actutils.c: In function ‘GetOldBlastAlignmentPiece’: ../include/ncbimem.h:232:23: warning: ‘program’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ actutils.c:3089:25: note: ‘program’ was declared here 3089 | CharPtr program; | ^~~~~~~ actutils.c: In function ‘ACT_FindPeakScores’: actutils.c:1342:31: warning: ‘ats_newprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1342 | ats_newprev->next = ats_new; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ actutils.c:1321:28: warning: ‘ats_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1321 | ats_prev->next = ats; | ~~~~~~~~~~~~~~~^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF posit.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from posit.c:402: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ posit.c: In function ‘posDemographics’: posit.c:1110:17: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable] 1110 | Int4 numseq, numSeqAligns; /*number of matching sequences and SeqAligns*/ | ^~~~~~~~~~~~ posit.c: In function ‘posFreqsToMatrix’: posit.c:1679:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4)) + (sizetype)((unsigned int)a * 4))’ may be undefined [-Wsequence-point] 1679 | posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN; posit.c: In function ‘posComputePseudoFreqs’: posit.c:1840:16: warning: variable ‘lambda’ set but not used [-Wunused-but-set-variable] 1840 | Nlm_FloatHi lambda; /*Karlin-Altschul parameter*/ | ^~~~~~ posit.c: In function ‘WposComputation’: posit.c:1988:13: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable] 1988 | Int4 i, numSeqAligns, numseq, qlength; | ^~~~~~~~~~~~ posit.c: In function ‘posPrintInformation’: posit.c:2319:8: warning: variable ‘querySize’ set but not used [-Wunused-but-set-variable] 2319 | Int4 querySize; | ^~~~~~~~~ posit.c: In function ‘posFindAlignmentDimensions’: posit.c:3064:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3064 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c:3070:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3070 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c:3079:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3079 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c:3086:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3086 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c: In function ‘posPreprocessAlignment’: posit.c:3137:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3137 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c:3152:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3152 | fgets(nextLine, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ posit.c: In function ‘posReadAlignment’: posit.c:3253:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3253 | fgets(nextline, ALIGN_LINE_LENGTH,checkFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: posit.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: posit.c,v 6.88 2011/10/25 14:33:16 boratyng Exp $"; | ^~~~~ posit.c: In function ‘posFindAlignmentDimensions’: posit.c:3090:20: warning: ‘testCountSeqs’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3090 | testCountSeqs++; | ~~~~~~~~~~~~~^~ posit.c: In function ‘posComputeSequenceWeights’: posit.c:1447:36: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1447 | posSearch->posSigma[qplace] = intervalSigma; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ posit.c:1424:11: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1424 | if (Sigma > 0) { | ^ posit.c: In function ‘posReadCheckpoint’: posit.c:2873:28: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2873 | if (i < pssm->numColumns || j < pssm->numRows) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ posit.c:2702:11: note: ‘j’ was declared here 2702 | Int4 i, j, c; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from lookup.c:308: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ lookup.c: In function ‘lookup_get_memory’: lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 555 | Uint8 extra = ((Uint8)mem_struct->current) & ((Uint8) 63); | ^ In file included from ../include/blastdef.h:922, from ../include/blast.h:470, from lookup.c:309: lookup.c: In function ‘MegaBlastBuildLookupTable’: ../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT | ^ lookup.c:1047:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’ 1047 | GET_EXTRA_CODE_18_OPT(seq)) & no_bit0; | ^~~~~~~~~~~~~~~~~~~~~ ../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT | ^ lookup.c:1051:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’ 1051 | GET_EXTRA_CODE_18_OPT(seq)) & no_bit0; | ^~~~~~~~~~~~~~~~~~~~~ ../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT | ^ lookup.c:1078:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’ 1078 | GET_EXTRA_CODE_18_OPT(seq) | bit0; | ^~~~~~~~~~~~~~~~~~~~~ ../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT | ^ lookup.c:1082:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’ 1082 | GET_EXTRA_CODE_18_OPT(seq) | bit0; | ^~~~~~~~~~~~~~~~~~~~~ lookup.c:914:25: warning: variable ‘extra_code’ set but not used [-Wunused-but-set-variable] 914 | register Int4 ecode, extra_code; | ^~~~~~~~~~ At top level: lookup.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: lookup.c,v 6.59 2005/07/28 14:57:10 coulouri Exp $"; | ^~~~~ lookup.c: In function ‘MegaBlastBuildLookupTable’: lookup.c:975:10: warning: ‘word_weight’ may be used uninitialized in this function [-Wmaybe-uninitialized] 975 | if (word_weight >= 12) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF readdb.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ readdb.c: In function ‘readdb_parse_db_names’: readdb.c:2503:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 2503 | if (**filenames == '"') | ^ readdb.c: In function ‘s_GetBlastDirInfo’: readdb.c:2734:32: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess] 2734 | memset(blast_dir, 0, sizeof(blast_dir)); | ^ readdb.c: In function ‘IndexFileExists’: readdb.c:3320:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3320 | if (rdfp->cih) | ^~ readdb.c:3326:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3326 | if (rdbap->first_oid > 0) { | ^~ readdb.c:3400:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3400 | if (rdfp->cih && rdfp->aliasfilebit == 0) | ^~ readdb.c:3406:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3406 | if (rdbap->first_oid > 0) { | ^~ readdb.c: In function ‘FindBlastDBFileEx’: readdb.c:3480:33: warning: unused variable ‘envp’ [-Wunused-variable] 3480 | CharPtr buffer, buffer1, envp = NULL; | ^~~~ readdb.c: In function ‘readdb_new_internalEx’: readdb.c:3558:25: warning: unused variable ‘envp’ [-Wunused-variable] 3558 | CharPtr charptr, envp = NULL; | ^~~~ readdb.c: In function ‘readdb_get_link’: readdb.c:4752:12: warning: variable ‘loaded_new’ set but not used [-Wunused-but-set-variable] 4752 | Boolean loaded_new = FALSE; | ^~~~~~~~~~ readdb.c:4751:24: warning: variable ‘last_used’ set but not used [-Wunused-but-set-variable] 4751 | ReadDBFILEPtr last, last_used, rdfp_var; | ^~~~~~~~~ readdb.c: In function ‘readdb_check_oid’: readdb.c:4896:38: warning: comparisons like ‘X<=Y<=Z’ do not have their mathematical meaning [-Wparentheses] 4896 | if (rdfp_var->start <= oid <= rdfp_var->stop) | ~~~~~~~~~~~~~~~~^~~~~~ readdb.c: In function ‘readdb_seqid2fasta’: readdb.c:5236:22: warning: unused variable ‘dummy_gi’ [-Wunused-variable] 5236 | Int4 dummy_gi = 0; /* Not used, should have been handled above. */ | ^~~~~~~~ readdb.c:5180:13: warning: unused variable ‘chptr’ [-Wunused-variable] 5180 | CharPtr chptr = NULL; | ^~~~~ readdb.c: In function ‘FDBuildOldStyleDefline’: readdb.c:6366:33: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess] 6366 | MemSet(defline, '\0', sizeof(defline)); | ^ readdb.c: In function ‘PrintDbInformationWithRID’: readdb.c:7571:14: warning: comparison between pointer and zero character constant [-Wpointer-compare] 7571 | if (rdfp == FALSE) | ^~ readdb.c:7571:9: note: did you mean to dereference the pointer? 7571 | if (rdfp == FALSE) | ^ readdb.c: In function ‘FDBLoadMembershipsTable’: readdb.c:8265:21: warning: variable ‘fn_name’ set but not used [-Wunused-but-set-variable] 8265 | const char* fn_name = NULL; | ^~~~~~~ readdb.c: In function ‘SeqIdE2Index’: readdb.c:8613:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 8613 | if ((tsip->version > 0) && (tsip->release == NULL)) | ^~ readdb.c:8615:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 8615 | break; | ^~~~~ readdb.c:8618:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 8618 | if (tsip->version > 0) | ^~ readdb.c:8620:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 8620 | break; | ^~~~~ readdb.c:8577:13: warning: unused variable ‘tmp’ [-Wunused-variable] 8577 | CharPtr tmp, ptr=NULL; | ^~~ readdb.c:8576:11: warning: unused variable ‘tmptype’ [-Wunused-variable] 8576 | Uint1 tmptype; | ^~~~~~~ readdb.c: In function ‘SeqIdSetE2Index’: readdb.c:8881:14: warning: variable ‘oldanp’ set but not used [-Wunused-but-set-variable] 8881 | SeqIdPtr oldanp; | ^~~~~~ readdb.c: In function ‘FindDBbyGI’: readdb.c:11397:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 11397 | if (gi > cih->maxgi) | ^~ readdb.c:11400:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 11400 | cigi = cih->ci + gi; | ^~~~ readdb.c: In function ‘Fastacmd_Search_ex’: readdb.c:12080:22: warning: variable ‘guess_gi’ set but not used [-Wunused-but-set-variable] 12080 | Int4 guess_gi = -1; | ^~~~~~~~ readdb.c: In function ‘DumpOneSequence’: readdb.c:12407:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 12407 | fprintf(fp, "%d\n", gi->data.intvalue); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int Nlm_Int8 {aka long long int} | %lld readdb.c:12417:14: warning: unused variable ‘numeric_id’ [-Wunused-variable] 12417 | Boolean numeric_id = GetAccessionVersionFromSeqId(accn, &gi, &id, TRUE); | ^~~~~~~~~~ In file included from ../include/sqnutils.h:51, from readdb.c:2067: readdb.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ readdb.c:12829:1: warning: ‘readdb_preload_index’ defined but not used [-Wunused-function] 12829 | readdb_preload_index (ReadDBFILEPtr rdfp, Int4 first_db_seq, | ^~~~~~~~~~~~~~~~~~~~ In file included from readdb.c:2060: ../include/ncbisami.h:191:14: warning: ‘OneBit’ defined but not used [-Wunused-variable] 191 | static Uint1 OneBit[] = {0x80 , 0x40, 0x20, 0x10, 0x8, 0x4, 0x2, 0x1}; | ^~~~~~ ../include/ncbisami.h:183:14: warning: ‘PowersOfTwo’ defined but not used [-Wunused-variable] 183 | static Uint4 PowersOfTwo[] = {01,02,04,010,020,040,0100,0200,0400,01000, | ^~~~~~~~~~~ readdb.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: readdb.c,v 6.549 2016/09/02 15:04:59 ucko Exp $"; | ^~~~~ readdb.c: In function ‘readdb_read_alias_file’: readdb.c:3084:53: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3084 | sprintf(full_buffer, "%s%c%s", file_path, | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3090:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3090 | sprintf(full_buffer, "%s%c%s", file_path, | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:2994:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2994 | sprintf(full_buffer, "%s%c%s", file_path, | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c: In function ‘Int4ListReadFromFile’: readdb.c:2656:31: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2656 | sprintf(file_name, "%s%s%s", blast_dir, DIRDELIMSTR, FileNameFind(fname)); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c: In function ‘ReadDBOpenMHdrAndSeqFiles’: readdb.c:2277:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 2277 | sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:2296:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 2296 | sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:2252:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 2252 | sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:2259:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 2259 | sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c: In function ‘readdb_get_taxonomy_names’: readdb.c:5679:28: warning: ‘ufp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5679 | ufp_last->next = ufp; | ~~~~~~~~~~~~~~~^~~~~ readdb.c: In function ‘readdb_get_descriptor’: readdb.c:6668:44: warning: ‘new_defline_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 6668 | new_defline_length += StringLen(defline) + StringLen(id_buf); | ^~ readdb.c: In function ‘readdb_new_internalEx’: readdb.c:3600:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 3600 | sprintf(buffer1, "%s%s%s", buffer, DIRDELIMSTR, filename); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3671:25: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3671 | sprintf(buffer, "%s.%cin", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3811:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3811 | sprintf(buffer, "%s.%cnd", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3812:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3812 | sprintf(buffer1, "%s.%cni", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3825:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3825 | sprintf(buffer, "%s.%csd", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3826:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=] 3826 | sprintf(buffer1, "%s.%csi", rdfp->full_filename, is_prot? 'p':'n'); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3845:29: warning: ‘.ppd’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 3845 | sprintf(buffer, "%s.ppd", rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c:3846:29: warning: ‘.ppi’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 3846 | sprintf(buffer1, "%s.ppi", rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readdb.c: In function ‘GetAccList’: readdb.c:11821:29: warning: ‘AccListLast’ may be used uninitialized in this function [-Wmaybe-uninitialized] 11821 | AccListLast->next = AccListTmp; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ readdb.c: In function ‘FD_ConstructMultivolumeDBList’: readdb.c:12690:31: warning: ‘%03ld’ directive writing between 3 and 10 bytes into a region of size 9 [-Wformat-overflow=] 12690 | sprintf(numstr, ".%03ld ", (long) i); | ^~~~~ readdb.c:12690:29: note: directive argument in the range [100, 2147483646] 12690 | sprintf(numstr, ".%03ld ", (long) i); | ^~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/readdb.h:757, from readdb.c:2057: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 13 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisam.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbisam.c:198: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbisam.c: In function ‘ISAMMakeStringIndex’: ncbisam.c:842:22: warning: unused variable ‘file_pos’ [-Wunused-variable] 842 | Int4 file_pos = ftell(data->db_fd); | ^~~~~~~~ ncbisam.c: In function ‘ISAMInitSearch’: ncbisam.c:1399:10: warning: variable ‘reserved2’ set but not used [-Wunused-but-set-variable] 1399 | Int4 reserved2; | ^~~~~~~~~ At top level: ncbisam.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: ncbisam.c,v 6.34 2007/11/06 19:20:06 coulouri Exp $"; | ^~~~~ ncbisam.c: In function ‘ISAMMakeNumericIndex’: ncbisam.c:984:21: warning: ‘KeyDataInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 984 | NISAMKeyDataPtr KeyDataInfo, KeyDataSamples; | ^~~~~~~~~~~ ncbisam.c:983:14: warning: ‘KeyInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 983 | Uint4Ptr KeyInfo, KeySamples; | ^~~~~~~ In file included from ../include/ncbi.h:59, from ncbisam.c:198: ncbisam.c: In function ‘ISAMCreateDatabase’: ../include/ncbimem.h:232:23: warning: ‘prevterm’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ ncbisam.c:1181:13: note: ‘prevterm’ was declared here 1181 | CharPtr prevterm; | ^~~~~~~~ In file included from ../include/ncbimsg.h:78, from ../include/ncbi.h:60, from ncbisam.c:198: ../include/ncbierr.h:246:23: warning: ‘field_in’ may be used uninitialized in this function [-Wmaybe-uninitialized] 246 | #define ErrLogPrintf Nlm_ErrLogPrintf | ^~~~~~~~~~~~~~~~ ncbisam.c:1177:37: note: ‘field_in’ was declared here 1177 | unsigned long uid_in, uid_last, field_in; | ^~~~~~~~ In file included from ../include/ncbi.h:59, from ncbisam.c:198: ncbisam.c: In function ‘NISAMSearch’: ../include/ncbimem.h:232:23: warning: ‘KeyDataPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ ncbisam.c:1622:55: note: ‘KeyDataPageStart’ was declared here 1622 | NISAMKeyDataPtr KeyDataPage=NULL, KeyDataSamples, KeyDataPageStart; | ^~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:59, from ncbisam.c:198: ../include/ncbimem.h:232:23: warning: ‘KeyPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ ncbisam.c:1619:34: note: ‘KeyPageStart’ was declared here 1619 | Int4 NumElements, *KeyPage, *KeyPageStart; | ^~~~~~~~~~~~ ncbisam.c:1750:36: warning: ‘KeyPage’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1750 | Key = SwapUint4(KeyPage[current]); | ^ ncbisam.c:1593:24: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1593 | *Start = SampleNum * data->PageSize; | ~~~~~~~~~~^~~~~~~~~~~~~~~~ ncbisam.c:1618:27: note: ‘SampleNum’ was declared here 1618 | Int4 Start = 0, Stop, SampleNum; | ^~~~~~~~~ ncbisam.c: In function ‘SISAMSearch’: ncbisam.c:2373:8: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2373 | if ( (SampleNum < 0) || (SampleNum >= data->NumSamples)) { | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisort.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbisort.h:62, from ../include/ncbisrti.h:60, from ncbisort.c:86: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbisort.c: In function ‘SORTFracCompare’: ncbisort.c:699:12: warning: type defaults to ‘int’ in declaration of ‘tmpa’ [-Wimplicit-int] 699 | register tmpa = UCHAR(*a), tmpb = UCHAR(*b); | ^~~~ ncbisort.c:699:30: warning: type defaults to ‘int’ in declaration of ‘tmpb’ [-Wimplicit-int] 699 | register tmpa = UCHAR(*a), tmpb = UCHAR(*b); | ^~~~ In file included from ncbisort.c:86: ncbisort.c: At top level: ../include/ncbisrti.h:213:13: warning: ‘inthandler’ declared ‘static’ but never defined [-Wunused-function] 213 | static void inthandler(int i); | ^~~~~~~~~~ ncbisort.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: ncbisort.c,v 6.9 2012/08/22 23:02:39 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salign.h:10, from salign.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salign.c: In function ‘BandAlignTwoSeqLocsFunc’: salign.c:173:13: warning: variable ‘is_prot’ set but not used [-Wunused-but-set-variable] 173 | Boolean is_prot; | ^~~~~~~ salign.c: In function ‘SortBlastHits’: salign.c:391:15: warning: variable ‘totalvalmax’ set but not used [-Wunused-but-set-variable] 391 | totalvalmax = INT4_MAX, | ^~~~~~~~~~~ salign.c: In function ‘link_solution’: salign.c:1188:15: warning: unused variable ‘first’ [-Wunused-variable] 1188 | Boolean first = TRUE; | ^~~~~ At top level: salign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: salign.c,v 6.11 2009/01/21 17:09:18 bollin Exp $"; | ^~~~~ salign.c: In function ‘SortBlastHits’: salign.c:455:6: warning: ‘salpdup’ may be used uninitialized in this function [-Wmaybe-uninitialized] 455 | SeqAlignSetFree (salpdup); | ^~~~~~~~~~~~~~~~~~~~~~~~~ salign.c: In function ‘TranslateSeqLoc.constprop’: salign.c:660:10: warning: ‘slpp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 660 | return slpp; | ^~~~ salign.c: In function ‘BlastBandAlignTwoSeqLocs.constprop’: salign.c:1433:17: warning: ‘tail’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1433 | tail->next = salptmp; | ~~~~~~~~~~~^~~~~~~~~ salign.c:1408:15: note: ‘tail’ was declared here 1408 | tail, | ^~~~ salign.c:1348:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1348 | intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1); | ~~~~~^~~~~~~~ salign.c:1301:30: note: ‘stop’ was declared here 1301 | Int4 start, start1, stop; | ^~~~ salign.c:1348:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1348 | intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1); | ~~~~~^~~~~~~~ salign.c:1301:22: note: ‘start1’ was declared here 1301 | Int4 start, start1, stop; | ^~~~~~ salign.c:1270:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1270 | intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1); | ~~~~~^~~~~~~~ salign.c:1229:30: note: ‘stop’ was declared here 1229 | Int4 start, start1, stop; | ^~~~ salign.c:1270:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1270 | intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1); | ~~~~~^~~~~~~~ salign.c:1229:22: note: ‘start1’ was declared here 1229 | Int4 start, start1, stop; | ^~~~~~ salign.c: In function ‘SeqLocListToSeqAlign’: salign.c:1670:24: warning: ‘master_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1670 | salpblast = BlastTwoSeqLocs (master_slp, slp, is_prot, msp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salptool.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from salptool.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ salptool.c: In function ‘MergeTwoDspBySIM4’: salptool.c:285:10: warning: variable ‘has_overlap’ set but not used [-Wunused-but-set-variable] 285 | Boolean has_overlap; | ^~~~~~~~~~~ salptool.c:281:7: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable] 281 | Int4 gap=0,gap_1, gap_2; | ^~~ salptool.c: In function ‘extend_dsp_ends’: salptool.c:1329:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1329 | else | ^~~~ salptool.c:1331:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1331 | if(extend_len > 0) | ^~ salptool.c:1346:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1346 | else | ^~~~ salptool.c:1348:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1348 | if(extend_len > 0) | ^~ salptool.c:1363:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1363 | else | ^~~~ salptool.c:1365:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1365 | if(extend_len > 0) | ^~ salptool.c:1380:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1380 | else | ^~~~ salptool.c:1382:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1382 | if(extend_len > 0) | ^~ In file included from ../include/sqnutils.h:51, from salptool.c:12: salptool.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from salptool.c:14: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ salptool.c:1518:24: warning: ‘OrderBestHits’ defined but not used [-Wunused-function] 1518 | static int LIBCALLBACK OrderBestHits(Pointer ptr1, Pointer ptr2) | ^~~~~~~~~~~~~ salptool.c:1468:13: warning: ‘showtextalign_fromalign’ defined but not used [-Wunused-function] 1468 | static void showtextalign_fromalign (SeqAlignPtr salp, CharPtr path, FILE *fp) | ^~~~~~~~~~~~~~~~~~~~~~~ salptool.c:1453:13: warning: ‘getlengthforid’ defined but not used [-Wunused-function] 1453 | static Int4 getlengthforid (SeqIdPtr sip) | ^~~~~~~~~~~~~~ salptool.c:1267:16: warning: ‘need_recompute’ defined but not used [-Wunused-function] 1267 | static Boolean need_recompute(SeqAlignPtr align, Int4 m_len, Int4 s_len) | ^~~~~~~~~~~~~~ salptool.c:838:13: warning: ‘SeqLocTrimPolyATail’ defined but not used [-Wunused-function] 838 | static void SeqLocTrimPolyATail(SeqLocPtr loc_2, BioseqPtr bsp_2) { | ^~~~~~~~~~~~~~~~~~~ salptool.c:46:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function] 46 | static void SeqAnnotWrite(SeqAlignPtr align) | ^~~~~~~~~~~~~ salptool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: salptool.c,v 6.57 2008/07/07 18:52:31 bollin Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from urkutil.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkutil.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkpcc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkpcc.h:54, from urkpcc.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkpcc.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkpcc.c,v 6.13 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkptpf.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from urkptpf.c:65: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkptpf.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkptpf.c,v 6.33 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkepi.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkepi.h:54, from urkepi.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkepi.c: In function ‘PredictEpiI0’: urkepi.c:214:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] 214 | epip->epiarray[*seq] += 1; | ^~~~ urkepi.c:239:59: warning: array subscript has type ‘char’ [-Wchar-subscripts] 239 | episcore = DownArrayScore (episcore, epip->epiarray[*seq]); | ^~~~ urkepi.c:240:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] 240 | epip->epiarray[*seq] += 1; | ^~~~ urkepi.c:241:57: warning: array subscript has type ‘char’ [-Wchar-subscripts] 241 | episcore = UpArrayScore (episcore, epip->epiarray[*seq]); | ^~~~ urkepi.c:263:59: warning: array subscript has type ‘char’ [-Wchar-subscripts] 263 | episcore = DownArrayScore (episcore, epip->epiarray[*(seq-window)]); | ^~~~~~~~~~~~~ urkepi.c:264:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] 264 | epip->epiarray[*(seq-window)] -= 1; | ^~~~~~~~~~~~~ urkepi.c:265:57: warning: array subscript has type ‘char’ [-Wchar-subscripts] 265 | episcore = UpArrayScore (episcore, epip->epiarray[*(seq-window)]); | ^~~~~~~~~~~~~ urkepi.c: In function ‘OptimizeEpiComp’: urkepi.c:605:18: warning: array subscript has type ‘char’ [-Wchar-subscripts] 605 | bin[seq[i]] += 1; | ~~~^~~ urkepi.c:621:18: warning: array subscript has type ‘char’ [-Wchar-subscripts] 621 | bin[seq[i]] += 1; | ~~~^~~ urkepi.c:651:19: warning: array subscript has type ‘char’ [-Wchar-subscripts] 651 | if (fbin[seq[i]] > expect) | ~~~^~~ urkepi.c:657:19: warning: array subscript has type ‘char’ [-Wchar-subscripts] 657 | if (fbin[seq[i]] > expect) | ~~~^~~ urkepi.c: In function ‘OptimizeEpiHP’: urkepi.c:782:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 782 | epip->epiarray[seq[j]] += 1; | ~~~^~~ urkepi.c:797:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 797 | epip->epiarray[seq[j]] += 1; | ~~~^~~ urkepi.c:837:29: warning: array subscript has type ‘char’ [-Wchar-subscripts] 837 | epip->epiarray[seq[n]] -= 1; | ~~~^~~ urkepi.c: In function ‘OptimizeEpiProbFunc’: urkepi.c:982:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 982 | epip->epiarray[seq[n]] += 1; | ~~~^~~ urkepi.c:994:31: warning: array subscript has type ‘char’ [-Wchar-subscripts] 994 | epip->epiarray[seq[n]] += 1; | ~~~^~~ At top level: urkepi.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkepi.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ urkepi.c: In function ‘FilterEpi’: urkepi.c:1053:21: warning: ‘right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1053 | cfap->right = right; | ~~~~~~~~~~~~^~~~~~~ urkepi.c:936:56: note: ‘right’ was declared here 936 | Int4 i, n, j, k, start, stop, loop, fact, left, right; | ^~~~~ urkepi.c:1052:20: warning: ‘left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1052 | cfap->left = left; | ~~~~~~~~~~~^~~~~~ urkepi.c:936:50: note: ‘left’ was declared here 936 | Int4 i, n, j, k, start, stop, loop, fact, left, right; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkfltr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkfltr.h:51, from urkfltr.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkfltr.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkfltr.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkdust.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkdust.h:51, from urkdust.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkdust.c: In function ‘DustMe_h’: urkdust.c:196:42: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 196 | (dcvp->curlevel <= newlevel) && dcvp->curend == loop+1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ urkdust.c: In function ‘DustForGraph’: urkdust.c:776:17: warning: variable ‘drphead’ set but not used [-Wunused-but-set-variable] 776 | DustRegionPtr drphead; | ^~~~~~~ At top level: urkdust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkdust.c,v 6.10 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urksigu.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urksigu.h:57, from urksigu.c:59: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urksigu.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urksigu.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seg.c seg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: seg.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ seg.c: In function ‘getprob’: seg.c:935:15: warning: ‘ans2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 935 | ans = ans1 + ans2 - totseq; | ~~~~~^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkbias.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from urkbias.c:56: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkbias.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkbias.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urkcnsrt.h:60, from urkcnsrt.c:80: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urkcnsrt.c:1203:13: warning: ‘ScanFrame’ defined but not used [-Wunused-function] 1203 | static void ScanFrame (BioseqPtr bsp, SeqLocPtr slp, Int4 frame, | ^~~~~~~~~ urkcnsrt.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urkcnsrt.c,v 6.21 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ urkcnsrt.c: In function ‘Scan3Frames’: urkcnsrt.c:1385:5: warning: ‘length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1385 | for (i = n; i < length; i++) | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urktree.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/urktree.h:51, from urktree.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ urktree.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: urktree.c,v 6.6 2003/05/30 17:25:38 coulouri Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pseed3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from pseed3.c:176: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pseed3.c: In function ‘SeedPruneHitsFromSeedReturn’: pseed3.c:230:17: warning: variable ‘curSegs’ set but not used [-Wunused-but-set-variable] 230 | DenseSegPtr curSegs, testSegs; /*Used to extract ids from curSeqAlign, testSeqAlign*/ | ^~~~~~~ pseed3.c: In function ‘seedEngineCore’: pseed3.c:507:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 507 | while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) { | ^~~~~~~ pseed3.c: In function ‘output_hits’: pseed3.c:1202:10: warning: variable ‘posBaseIndex’ set but not used [-Wunused-but-set-variable] 1202 | Int4 posBaseIndex; /*loop index for copying pos results arrays*/ | ^~~~~~~~~~~~ pseed3.c: In function ‘init_order’: pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1483 | seedSearch->order[seedSearch->pchars[i]] = i; | ^ pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1483 | seedSearch->order[seedSearch->pchars[i]] = i; | ~~~~~~~~~~~~~~~~~~^~~ pseed3.c:1487:33: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1487 | seedSearch->charMultiple[i] = 0; | ^ pseed3.c:1489:30: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1489 | if (seedSearch->standardProb[i] > seedepsilon) { | ^ pseed3.c:1490:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1490 | matrixRow = matrix[i]; | ^ pseed3.c:1493:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1493 | if (seedSearch->standardProb[j] > seedepsilon) | ^ pseed3.c:1494:42: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1494 | rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]); | ^ pseed3.c:1494:86: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1494 | rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]); | ^ pseed3.c:1496:28: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1496 | seedSearch->charMultiple[i] = rowSum; | ^ At top level: pseed3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: pseed3.c,v 6.54 2008/10/31 18:51:07 madden Exp $"; | ^~~~~ pseed3.c: In function ‘seedParallelFill’: pseed3.c:712:68: warning: iteration 100 invokes undefined behavior [-Waggressive-loop-optimizations] 712 | returnData->seedSearch->name_space[i] = seedSearch->name_space[i]; | ~~~~~~~~~~~~~~~~~~~~~~^~~ pseed3.c:711:4: note: within this loop 711 | for( i = 0; i <= BUF_SIZE; i++) | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pattern1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from pattern1.c:80: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ pattern1.c: In function ‘init_pattern’: pattern1.c:286:70: warning: array subscript has type ‘char’ [-Wchar-subscripts] 286 | positionProbability = seedSearch->standardProb[seedSearch->order[c]]; | ~~~~~~~~~~~~~~~~~^~~ pattern1.c:303:71: warning: array subscript has type ‘char’ [-Wchar-subscripts] 303 | positionProbability += seedSearch->standardProb[seedSearch->order[c]]; | ~~~~~~~~~~~~~~~~~^~~ pattern1.c:317:71: warning: array subscript has type ‘char’ [-Wchar-subscripts] 317 | positionProbability -= seedSearch->standardProb[seedSearch->order[c]]; | ~~~~~~~~~~~~~~~~~^~~ pattern1.c: In function ‘find_hitsS_DNA’: pattern1.c:534:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 534 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ^~~ pattern1.c:547:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 547 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ^~~ pattern1.c: At top level: pattern1.c:744:8: warning: return type defaults to ‘int’ [-Wimplicit-int] 744 | static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch) | ^~~ pattern1.c: In function ‘and’: pattern1.c:750:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 750 | if (result[i] = (a[i] & b[i])) | ^~~~~~ pattern1.c: In function ‘align’: pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1102 | if (leftd >= 1) | ^ pattern1.c: In function ‘pat_output’: pattern1.c:1637:2: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1637 | else | ^~~~ pattern1.c:1639:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1639 | ValNodeCopyStr(info_vnp, 0, buffer); | ^~~~~~~~~~~~~~ At top level: pattern1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: pattern1.c,v 6.22 2006/08/04 21:11:17 papadopo Exp $"; | ^~~~~ pattern1.c: In function ‘align’: pattern1.c:1158:8: warning: ‘CDrow’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1158 | score = (CDrow-1)->CC; | ~~~~~~^~~~~~~~~~~~~~~ pattern1.c: In function ‘get_patLL’: pattern1.c:1393:5: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1393 | for (j = 0; j < pos; j+= wordIndex) { | ^~~ pattern1.c: In function ‘get_patL’: pattern1.c:1348:10: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1348 | *end = wordIndex*BITS_PACKED_PER_WORD+j; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pattern1.c: In function ‘init_pattern’: pattern1.c:359:39: warning: ‘tj’ may be used uninitialized in this function [-Wmaybe-uninitialized] 359 | patternSearch->inputPatternMasked[i] = tempInputPatternMasked[i]; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ pattern1.c: In function ‘align_of_pattern’: pattern1.c:1506:23: warning: ‘data’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1506 | local_score += ALIGN_B(querySeq-1, dbSeq-1, hitArray1[wordIndex+1], hitArray2[wordIndex+1], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1507 | BAND_LOW, BAND_HIGH, matrix, gap_open, gap_extend, alignScript, data); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF impatool.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from impatool.c:73: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ impatool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: impatool.c,v 6.16 2006/06/30 18:44:40 camacho Exp $"; | ^~~~~ In file included from ../include/ncbi.h:59, from impatool.c:73: impatool.c: In function ‘IMPALAPrintHelp’: ../include/ncbimem.h:232:23: warning: ‘ret_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define MemFree Nlm_MemFree | ^~~~~~~~~~~ impatool.c:288:10: note: ‘ret_buffer’ was declared here 288 | CharPtr ret_buffer; | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF posit2.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from posit2.c:78: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ posit2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: posit2.c,v 6.12 2006/09/18 20:54:27 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mbalign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/mbalign.h:4, from mbalign.c:176: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mbalign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: mbalign.c,v 6.43 2006/02/02 17:57:34 papadopo Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vecscrn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vecscrn.h:74, from vecscrn.c:103: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ vecscrn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: vecscrn.c,v 6.137 2005/12/27 14:46:44 madden Exp $"; | ^~~~~ vecscrn.c: In function ‘VSPrintOverviewFromSeqLocs’: vecscrn.c:1078:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1078 | while (tmp) | ^ vecscrn.c: In function ‘VSPrintListFromSeqLocs’: vecscrn.c:1188:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1188 | while (tmp) | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mblast.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mblast.c:710: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mblast.c: In function ‘BioseqMegaBlastEngineCore’: mblast.c:961:12: warning: statement with no effect [-Wunused-value] 961 | stop_timer("BioseqBlastEngineCore: before do_the_blast_run()"); | ^ mblast.c:987:12: warning: statement with no effect [-Wunused-value] 987 | stop_timer("MegaBlastEngineCore: after do_the_blast_run()"); | ^ mblast.c:942:14: warning: variable ‘seqalign’ set but not used [-Wunused-but-set-variable] 942 | SeqAlignPtr seqalign, PNTR seqalignp; | ^~~~~~~~ mblast.c: In function ‘MegaBlastSetUpSearchInternalByLoc’: mblast.c:1167:16: warning: variable ‘avglen’ set but not used [-Wunused-but-set-variable] 1167 | Nlm_FloatHi avglen; | ^~~~~~ mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’: mblast.c:1829:14: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable] 1829 | SeqLocPtr slp; | ^~~ mblast.c: In function ‘MegaBlastWordFinder_disc_1b’: mblast.c:2372:32: warning: variable ‘mask’ set but not used [-Wunused-but-set-variable] 2372 | register Int4 s_off, ecode, mask, q_off, extra_code; | ^~~~ At top level: mblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: mblast.c,v 6.215 2006/09/21 13:42:37 madden Exp $"; | ^~~~~ mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’: mblast.c:1864:19: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1864 | sap->next = seqalign_var; | ~~~~~~~~~~^~~~~~~~~~~~~~ mblast.c: In function ‘MegaBlastWordFinder_disc’: mblast.c:2250:53: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2250 | (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) { | ~~~~~~~^~~~~~~~~~~~~~~ mblast.c:2151:47: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2151 | for (q_off = lookup->mb_lt->hashtable[ecode1]; q_off>0; | ^ mblast.c: In function ‘MegaBlastWordFinder’: mblast.c:2620:54: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2620 | (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) { | ~~~~~~~^~~~~~~~~~~~~~~ mblast.c:2373:17: note: ‘ecode2’ was declared here 2373 | Int4 ecode1, ecode2; | ^~~~~~ mblast.c:2475:52: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2475 | (((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0) | ~~~~~~~^~~~~~~~~~~~~~~ mblast.c:2373:9: note: ‘ecode1’ was declared here 2373 | Int4 ecode1, ecode2; | ^~~~~~ mblast.c: In function ‘MegaBlastGapInfoToSeqAlign’: mblast.c:3504:16: warning: ‘seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3504 | SeqAlignPtr seqalign, seqalign_var, sap; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF rpsutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/rpsutil.h:128, from rpsutil.c:281: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rpsutil.c: In function ‘RPSBlastSearchLight’: rpsutil.c:1838:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 1838 | Int2 status; | ^~~~~~ rpsutil.c: In function ‘SaveUntilChar’: rpsutil.c:2190:13: warning: comparison between pointer and zero character constant [-Wpointer-compare] 2190 | if (ptr != NULLB) | ^~ rpsutil.c:2190:9: note: did you mean to dereference the pointer? 2190 | if (ptr != NULLB) | ^ rpsutil.c: In function ‘RPSBgetCddHits’: rpsutil.c:2210:21: warning: variable ‘found_score’ set but not used [-Wunused-but-set-variable] 2210 | Boolean found_score = FALSE; | ^~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from rpsutil.c:282: rpsutil.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ rpsutil.c: In function ‘getAuxInformation’: rpsutil.c:398:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 398 | fscanf(matrixAuxiliaryFile,"%s",underlyingMatrixName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:404:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 404 | fscanf(matrixAuxiliaryFile,"%d\n", gap_open); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:405:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 405 | fscanf(matrixAuxiliaryFile,"%d\n", gap_extend); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | fscanf(matrixAuxiliaryFile, "%le", &Kungapped); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:407:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 407 | fscanf(matrixAuxiliaryFile, "%le", &Hungapped); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:408:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 408 | fscanf(matrixAuxiliaryFile, "%d", &maxLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:409:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 409 | fscanf(matrixAuxiliaryFile, "%d", &dbLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:410:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 410 | fscanf(matrixAuxiliaryFile, "%lf", &privateScalingFactor); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:415:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 415 | fscanf(matrixAuxiliaryFile, "%d", &maxLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:416:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 416 | fscanf(matrixAuxiliaryFile, "%le", &(rpsinfo->karlinK[index])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: rpsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: rpsutil.c,v 6.76 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ rpsutil.c: In function ‘RPSAlignTraceBack’: rpsutil.c:1444:32: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1444 | search->sbp->posMatrix = posMatrix; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ rpsutil.c:1433:24: warning: ‘rev_subject_length’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1433 | seqalign = BlastGetGapAlgnTbck (search, 0, TRUE, FALSE, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1434 | subject, subject_length, | ~~~~~~~~~~~~~~~~~~~~~~~~ 1435 | rev_subject, rev_subject_length); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c: In function ‘RPSInitEx’: rpsutil.c:451:28: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 451 | sprintf(rps_matrix, "%s.rps", rpsinfo->rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/rpsutil.h:128, from rpsutil.c:281: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:452:28: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 452 | sprintf(rps_lookup, "%s.loo", rpsinfo->rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/rpsutil.h:128, from rpsutil.c:281: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c:453:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 453 | sprintf(rps_aux, "%s.aux", rpsinfo->rdfp->full_filename); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/rpsutil.h:128, from rpsutil.c:281: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rpsutil.c: In function ‘RPSCalcEValue’: rpsutil.c:1269:30: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1269 | search->sbp->posMatrix = posMatrix; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/rpsutil.h:128, from rpsutil.c:281: rpsutil.c: In function ‘RPSBgetCddHits’: ../include/ncbistr.h:284:20: warning: ‘dbname’ may be used uninitialized in this function [-Wmaybe-uninitialized] 284 | #define Nlm_StrCmp strcmp | ^~~~~~ rpsutil.c:2212:21: note: ‘dbname’ was declared here 2212 | CharPtr dbname; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF kappa.c kappa.c: In function ‘Kappa_SequenceGetProteinRange’: kappa.c:1399:7: warning: unused variable ‘i’ [-Wunused-variable] 1399 | int i; | ^ At top level: kappa.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: kappa.c,v 6.94 2013/11/04 15:42:10 boratyng Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF xmlblast.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/xmlblast.h:89, from xmlblast.c:171: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ xmlblast.c: In function ‘PSIXmlInit’: xmlblast.c:1239:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 1239 | Boolean retval = FALSE; | ^~~~~~ At top level: xmlblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: xmlblast.c,v 6.41 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ xmlblast.c: In function ‘BXMLGetSeqLineForStdSeg’: xmlblast.c:373:28: warning: ‘genetic_code2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 373 | CharPtr genetic_code1, genetic_code2; | ^~~~~~~~~~~~~ xmlblast.c: In function ‘BXMLSeqAlignToHits’: xmlblast.c:867:36: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 867 | if((hspp->next = BXMLGetHspFromSeqAlign(sap2, is_aa, chain, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 | is_ooframe, mask_loc)) == NULL) | ~~~~~~~~~~~~~~~~~~~~~~ xmlblast.c: In function ‘SeqAlignToHits’: xmlblast.c:1646:24: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1646 | hspp->next = GetHspFromSeqAlign(sap2, ungapped, &hsp_count); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bxmlobj.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from bxmlobj.c:3: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ bxmlobj.c: In function ‘BlastOutputAsnRead’: bxmlobj.c:96:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 96 | AsnReadFunc func; | ^~~~ bxmlobj.c: In function ‘ParametersAsnRead’: bxmlobj.c:361:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 361 | AsnReadFunc func; | ^~~~ bxmlobj.c:360:12: warning: unused variable ‘isError’ [-Wunused-variable] 360 | Boolean isError = FALSE; | ^~~~~~~ bxmlobj.c: In function ‘IterationAsnRead’: bxmlobj.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 613 | AsnReadFunc func; | ^~~~ bxmlobj.c: In function ‘StatisticsAsnRead’: bxmlobj.c:829:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 829 | AsnReadFunc func; | ^~~~ bxmlobj.c:828:12: warning: unused variable ‘isError’ [-Wunused-variable] 828 | Boolean isError = FALSE; | ^~~~~~~ bxmlobj.c: In function ‘HitAsnRead’: bxmlobj.c:1039:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1039 | AsnReadFunc func; | ^~~~ bxmlobj.c: In function ‘HspAsnRead’: bxmlobj.c:1244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1244 | AsnReadFunc func; | ^~~~ bxmlobj.c:1243:12: warning: unused variable ‘isError’ [-Wunused-variable] 1243 | Boolean isError = FALSE; | ^~~~~~~ At top level: bxmlobj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: bxmlobj.c,v 6.11 2006/09/18 15:20:39 bealer Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotseq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/tofasta.h:47, from ../include/dotseq.h:63, from dotseq.c:86: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dotseq.c:96:36: warning: missing braces around initializer [-Wmissing-braces] 96 | static Int4 DOTblosum62[24][24] = { | ^ 97 | 4, -1, -2, -2, 0, -1, -1, 0, -2, -1, -1, -1, -1, -2, -1, 1, 0, -3, -2, 0, -2, -1, 0, -4, | { } 98 | -1, 5, 0, -2, -3, 1, 0, -2, 0, -3, -2, 2, -1, -3, -2, -1, -1, -3, -2, -3, -1, 0, -1, -4, | { } 99 | -2, 0, 6, 1, -3, 0, 0, 0, 1, -3, -3, 0, -2, -3, -2, 1, 0, -4, -2, -3, 3, 0, -1, -4, | { } 100 | -2, -2, 1, 6, -3, 0, 2, -1, -1, -3, -4, -1, -3, -3, -1, 0, -1, -4, -3, -3, 4, 1, -1, -4, | { } 101 | 0, -3, -3, -3, 9, -3, -4, -3, -3, -1, -1, -3, -1, -2, -3, -1, -1, -2, -2, -1, -3, -3, -2, -4, | { } 102 | -1, 1, 0, 0, -3, 5, 2, -2, 0, -3, -2, 1, 0, -3, -1, 0, -1, -2, -1, -2, 0, 3, -1, -4, | { } 103 | -1, 0, 0, 2, -4, 2, 5, -2, 0, -3, -3, 1, -2, -3, -1, 0, -1, -3, -2, -2, 1, 4, -1, -4, | { } 104 | 0, -2, 0, -1, -3, -2, -2, 6, -2, -4, -4, -2, -3, -3, -2, 0, -2, -2, -3, -3, -1, -2, -1, -4, | { } 105 | -2, 0, 1, -1, -3, 0, 0, -2, 8, -3, -3, -1, -2, -1, -2, -1, -2, -2, 2, -3, 0, 0, -1, -4, | { } 106 | -1, -3, -3, -3, -1, -3, -3, -4, -3, 4, 2, -3, 1, 0, -3, -2, -1, -3, -1, 3, -3, -3, -1, -4, | { } 107 | -1, -2, -3, -4, -1, -2, -3, -4, -3, 2, 4, -2, 2, 0, -3, -2, -1, -2, -1, 1, -4, -3, -1, -4, | { } 108 | -1, 2, 0, -1, -3, 1, 1, -2, -1, -3, -2, 5, -1, -3, -1, 0, -1, -3, -2, -2, 0, 1, -1, -4, | { } 109 | -1, -1, -2, -3, -1, 0, -2, -3, -2, 1, 2, -1, 5, 0, -2, -1, -1, -1, -1, 1, -3, -1, -1, -4, | { } 110 | -2, -3, -3, -3, -2, -3, -3, -3, -1, 0, 0, -3, 0, 6, -4, -2, -2, 1, 3, -1, -3, -3, -1, -4, | { } 111 | -1, -2, -2, -1, -3, -1, -1, -2, -2, -3, -3, -1, -2, -4, 7, -1, -1, -4, -3, -2, -2, -1, -2, -4, | { } 112 | 1, -1, 1, 0, -1, 0, 0, 0, -1, -2, -2, 0, -1, -2, -1, 4, 1, -3, -2, -2, 0, 0, 0, -4, | { } 113 | 0, -1, 0, -1, -1, -1, -1, -2, -2, -1, -1, -1, -1, -2, -1, 1, 5, -2, -2, 0, -1, -1, 0, -4, | { } 114 | -3, -3, -4, -4, -2, -2, -3, -2, -2, -3, -2, -3, -1, 1, -4, -3, -2, 11, 2, -3, -4, -3, -2, -4, | { } 115 | -2, -2, -2, -3, -2, -1, -2, -3, 2, -1, -1, -2, -1, 3, -3, -2, -2, 2, 7, -1, -3, -2, -1, -4, | { } 116 | 0, -3, -3, -3, -1, -2, -2, -3, -3, 3, 1, -2, 1, -1, -2, -2, 0, -3, -1, 4, -3, -2, -1, -4, | { } 117 | -2, -1, 3, 4, -3, 0, 1, -1, 0, -3, -4, 0, -3, -3, -2, 0, -1, -4, -3, -3, 4, 1, -1, -4, | { } 118 | -1, 0, 0, 1, -3, 3, 4, -2, 0, -3, -3, 1, -1, -3, -1, 0, -1, -3, -2, -2, 1, 4, -1, -4, | { } 119 | 0, -1, -1, -1, -2, -1, -1, -1, -1, -1, -1, -1, -1, -1, -2, 0, 0, -2, -1, -1, -1, -1, -1, -4, | { } 120 | -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, 1 | { 121 | }; | } dotseq.c: In function ‘DOT_BuildPLookup’: dotseq.c:887:31: warning: variable ‘found_ambig’ set but not used [-Wunused-but-set-variable] 887 | Boolean EXACTMATCH, found_ambig, saved_index = FALSE; | ^~~~~~~~~~~ dotseq.c:885:19: warning: unused variable ‘threshold’ [-Wunused-variable] 885 | Int4 threshold=13; /* one-hit heuristics T must be at least 13*/ | ^~~~~~~~~ dotseq.c:883:19: warning: unused variable ‘index’ [-Wunused-variable] 883 | Int4 index = 0; | ^~~~~ dotseq.c: In function ‘DOT_ComputeHits’: dotseq.c:1043:47: warning: variable ‘q_end’ set but not used [-Wunused-but-set-variable] 1043 | Uint1Ptr s, subject0, s_end, q_end; | ^~~~~ dotseq.c:1041:19: warning: unused variable ‘saved_index’ [-Wunused-variable] 1041 | Boolean saved_index = FALSE; | ^~~~~~~~~~~ dotseq.c:1039:19: warning: unused variable ‘threshold’ [-Wunused-variable] 1039 | Int4 threshold=13; | ^~~~~~~~~ dotseq.c: In function ‘DOT_SPI_FindBestAlnByDotPlot’: dotseq.c:2016:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 2016 | Uint1 strand; | ^~~~~~ dotseq.c:2015:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable] 2015 | Int4 start2; | ^~~~~~ dotseq.c:2014:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable] 2014 | Int4 start1; | ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from dotseq.c:87: dotseq.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ dotseq.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: dotseq.c,v 6.14 2006/07/13 17:16:20 bollin Exp $"; | ^~~~~ dotseq.c: In function ‘DOT_BuildHitList’: dotseq.c:1327:5: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1327 | DOT_ScoreCount(mip, hitlist, index); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotseq.c:1327:5: warning: ‘hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized] arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF spidey.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/spidey.h:102, from spidey.c:263: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ spidey.c: In function ‘SPI_PrintResult’: spidey.c:1740:21: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 1740 | Int4 offset; | ^~~~~~ spidey.c: In function ‘SPI_AlnSinglemRNAToPieces’: spidey.c:2854:19: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 2854 | if (spot->from == spot->to == 0) | ~~~~~~~~~~~^~~~~~~~~~~ spidey.c: In function ‘SPI_FillInLastmRNAHoles’: spidey.c:6299:21: warning: variable ‘internal’ set but not used [-Wunused-but-set-variable] 6299 | Boolean internal; | ^~~~~~~~ spidey.c: In function ‘SPI_FindBestAlnByDotPlot’: spidey.c:6445:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable] 6445 | Uint1 strand; | ^~~~~~ spidey.c:6444:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable] 6444 | Int4 start2; | ^~~~~~ spidey.c:6443:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable] 6443 | Int4 start1; | ^~~~~~ spidey.c: In function ‘SPI_ConnectAlnPieces’: spidey.c:7814:30: warning: variable ‘tmparray’ set but not used [-Wunused-but-set-variable] 7814 | SPI_FragPtr PNTR tmparray; | ^~~~~~~~ spidey.c:7800:25: warning: variable ‘sfpprev’ set but not used [-Wunused-but-set-variable] 7800 | SPI_FragPtr sfpprev; | ^~~~~~~ spidey.c: In function ‘SPI_AdjustSplicesInPieces’: spidey.c:8448:23: warning: variable ‘minus’ set but not used [-Wunused-but-set-variable] 8448 | Boolean minus; | ^~~~~ spidey.c: In function ‘SPI_CheckMrnaOrder’: spidey.c:10296:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 10296 | if ((ival->strand == Seq_strand_plus == ival2->strand spidey.c:10300:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 10300 | || (ival->strand == Seq_strand_minus == ival2->strand spidey.c:10313:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 10313 | if ((ival->strand == Seq_strand_plus == ival2->strand spidey.c:10315:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses] 10315 | || (ival->strand == Seq_strand_plus == ival2->strand In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/spidey.h:103, from spidey.c:263: spidey.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ spidey.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: spidey.c,v 6.74 2016/09/02 14:57:38 ucko Exp $"; | ^~~~~ spidey.c: In function ‘SPI_GetProteinFrommRNA’: spidey.c:9777:14: warning: ‘c3start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9777 | tmp += c3start; | ^~ spidey.c:9765:14: warning: ‘c1start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 9765 | tmp += c1start; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF motif.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/motif.h:45, from motif.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ motif.c: In function ‘MOT_FindPolyA’: motif.c:86:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable] 86 | Uint1 buf[MOT_WINSIZE]; | ^~~ motif.c: In function ‘MOT_FindKozak’: motif.c:216:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable] 216 | Uint1 buf[MOT_WINSIZE]; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/motif.h:48, from motif.c:47: motif.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ motif.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: motif.c,v 6.7 2007/05/07 13:30:54 kans Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blfmtutl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from blfmtutl.c:175: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blfmtutl.c: In function ‘CBStatisticsGetReference’: blfmtutl.c:593:4: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 593 | } else | ^~~~ blfmtutl.c:595:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 595 | add_string_to_bufferEx("Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,", &ret_buffer, &ret_buffer_length, TRUE); | ^~~~~~~~~~~~~~~~~~~~~~ blfmtutl.c: In function ‘BlastPrintTabularResults’: blfmtutl.c:1281:16: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1281 | for (index=1; ssp->next; index++) | ^~~ blfmtutl.c:1283:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1283 | num_gap_opens = index / 2; | ^~~~~~~~~~~~~ At top level: blfmtutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: blfmtutl.c,v 1.44 2012/10/10 14:05:50 fongah2 Exp $"; | ^~~~~ blfmtutl.c: In function ‘BlastPrintTabularResults’: blfmtutl.c:1117:13: warning: ‘alignments_count’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1117 | if (--alignments_count < 0) | ^ blfmtutl.c:1353:19: warning: ‘s_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1353 | s_end += s_shift; | ~~~~~~^~~~~~~~~~ blfmtutl.c:1352:21: warning: ‘s_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1352 | s_start += s_shift; | ~~~~~~~~^~~~~~~~~~ blfmtutl.c:1351:19: warning: ‘q_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1351 | q_end += q_shift; | ~~~~~~^~~~~~~~~~ blfmtutl.c:1350:21: warning: ‘q_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1350 | q_start += q_shift; | ~~~~~~~~^~~~~~~~~~ blfmtutl.c:1081:24: warning: ‘query_id’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1081 | while (slp && SeqIdComp(query_id, SeqLocId(slp)) != SIC_YES) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blfmtutl.c: In function ‘BlastSetUserErrorString’: blfmtutl.c:1413:26: warning: ‘title’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1413 | CharPtr buf_start, ptr, title; | ^~~~~ rm -f libncbitool.a ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbitool.a ../lib ranlib ../lib/libncbitool.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF compo_heap.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smith_waterman.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF redo_alignment.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c rm -f libblastcompadj.a ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libblastcompadj.a ../lib ranlib ../lib/libblastcompadj.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfontg.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontmb.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfontmb.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfontt.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pictogif.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from pictogif.c:50: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfontl.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfonts.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/gifgen.h:115, from gdfonts.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -DWIN_GIF -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ncbidrwg.c:43: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ncbidrwg.c: In function ‘Nlm_ClearRgn’: ncbidrwg.c:6081:16: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable] 6081 | Nlm_RgnTool ntool; | ^~~~~ ncbidrwg.c: In function ‘Nlm_DiffRgn’: ncbidrwg.c:6273:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable] 6273 | Nlm_RgnTool ntool3; | ^~~~~~ ncbidrwg.c:6272:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable] 6272 | Nlm_RgnTool ntool2; | ^~~~~~ ncbidrwg.c:6271:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable] 6271 | Nlm_RgnTool ntool1; | ^~~~~~ ncbidrwg.c: In function ‘Nlm_XorRgn’: ncbidrwg.c:6324:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable] 6324 | Nlm_RgnTool ntool3; | ^~~~~~ ncbidrwg.c:6323:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable] 6323 | Nlm_RgnTool ntool2; | ^~~~~~ ncbidrwg.c:6322:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable] 6322 | Nlm_RgnTool ntool1; | ^~~~~~ ncbidrwg.c: In function ‘Nlm_EqualRgn’: ncbidrwg.c:6353:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable] 6353 | Nlm_RgnTool ntool2; | ^~~~~~ ncbidrwg.c:6352:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable] 6352 | Nlm_RgnTool ntool1; | ^~~~~~ ncbidrwg.c: In function ‘Nlm_EmptyRgn’: ncbidrwg.c:6381:17: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable] 6381 | Nlm_RgnTool ntool; | ^~~~~ ncbidrwg.c: In function ‘Nlm_CopyPixmap’: ncbidrwg.c:7040:25: warning: variable ‘height’ set but not used [-Wunused-but-set-variable] 7040 | Nlm_Int2 height; | ^~~~~~ ncbidrwg.c:7039:25: warning: variable ‘width’ set but not used [-Wunused-but-set-variable] 7039 | Nlm_Int2 width; | ^~~~~ In file included from ../include/ncbi.h:58, from ../include/vibtypes.h:94, from ncbidrwg.c:43: ncbidrwg.c: In function ‘Nlm_SectRect.part.0’: ../include/ncbistd.h:251:30: warning: ‘rect2.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 251 | #define MIN(a,b) ((a)>(b)?(b):(a)) | ^ ncbidrwg.c:4276:17: note: ‘rect2.bottom’ was declared here 4276 | Nlm_RecT rect2; | ^~~~~ In file included from ../include/ncbi.h:58, from ../include/vibtypes.h:94, from ncbidrwg.c:43: ../include/ncbistd.h:251:30: warning: ‘rect2.right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 251 | #define MIN(a,b) ((a)>(b)?(b):(a)) | ^ ncbidrwg.c:4276:17: note: ‘rect2.right’ was declared here 4276 | Nlm_RecT rect2; | ^~~~~ In file included from ../include/ncbi.h:58, from ../include/vibtypes.h:94, from ncbidrwg.c:43: ../include/ncbistd.h:255:31: warning: ‘rect2.top’ may be used uninitialized in this function [-Wmaybe-uninitialized] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^ ncbidrwg.c:4276:17: note: ‘rect2.top’ was declared here 4276 | Nlm_RecT rect2; | ^~~~~ In file included from ../include/ncbi.h:58, from ../include/vibtypes.h:94, from ncbidrwg.c:43: ../include/ncbistd.h:255:31: warning: ‘rect2.left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^ ncbidrwg.c:4276:17: note: ‘rect2.left’ was declared here 4276 | Nlm_RecT rect2; | ^~~~~ In file included from ../include/ncbi.h:58, from ../include/vibtypes.h:94, from ncbidrwg.c:43: ../include/ncbistd.h:251:30: warning: ‘rect1.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 251 | #define MIN(a,b) ((a)>(b)?(b):(a)) | ^ ncbidrwg.c:4275:17: note: ‘rect1.bottom’ was declared here 4275 | Nlm_RecT rect1; | ^~~~~ In file included from ../include/ncbi.h:58, from ../include/vibtypes.h:94, from ncbidrwg.c:43: ../include/ncbistd.h:251:30: warning: ‘rect1.right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 251 | #define MIN(a,b) ((a)>(b)?(b):(a)) | ^ ncbidrwg.c:4275:17: note: ‘rect1.right’ was declared here 4275 | Nlm_RecT rect1; | ^~~~~ In file included from ../include/ncbi.h:58, from ../include/vibtypes.h:94, from ncbidrwg.c:43: ../include/ncbistd.h:255:31: warning: ‘rect1.top’ may be used uninitialized in this function [-Wmaybe-uninitialized] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^ ncbidrwg.c:4275:17: note: ‘rect1.top’ was declared here 4275 | Nlm_RecT rect1; | ^~~~~ In file included from ../include/ncbi.h:58, from ../include/vibtypes.h:94, from ncbidrwg.c:43: ../include/ncbistd.h:255:31: warning: ‘rect1.left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 255 | #define MAX(a,b) ((a)>=(b)?(a):(b)) | ^ ncbidrwg.c:4275:17: note: ‘rect1.left’ was declared here 4275 | Nlm_RecT rect1; | ^~~~~ ncbidrwg.c: In function ‘s_DoQuadrant’: ncbidrwg.c:5619:10: warning: ‘rr.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5619 | ry = rr.bottom - rr.top; | ~~^~~~~~~ ncbidrwg.c:5618:10: warning: ‘rr.right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5618 | rx = rr.right - rr.left; | ~~^~~~~~ ncbidrwg.c:5619:22: warning: ‘rr.top’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5619 | ry = rr.bottom - rr.top; | ~~^~~~ ncbidrwg.c:5618:22: warning: ‘rr.left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5618 | rx = rr.right - rr.left; | ~~^~~~~ ncbidrwg.c: In function ‘Nlm_EraseRect.part.0’: ncbidrwg.c:4471:5: warning: ‘rtool.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 4471 | gdImageFilledRectangle(Nlm_currentGIF, rtool.left, rtool.top, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4472 | rtool.right, rtool.bottom, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:4471:5: warning: ‘rtool.right’ may be used uninitialized in this function [-Wmaybe-uninitialized] ncbidrwg.c:4471:5: warning: ‘rtool.top’ may be used uninitialized in this function [-Wmaybe-uninitialized] ncbidrwg.c:4471:5: warning: ‘rtool.left’ may be used uninitialized in this function [-Wmaybe-uninitialized] ncbidrwg.c: In function ‘Nlm_SelectFont.part.0’: ncbidrwg.c:500:12: warning: ‘fdata.print’ may be used uninitialized in this function [-Wmaybe-uninitialized] 500 | *fdata = *fp; | ~~~~~~~^~~~~ ncbidrwg.c:2875:17: note: ‘fdata.print’ was declared here 2875 | Nlm_FontData fdata; | ^~~~~ ncbidrwg.c:2912:15: warning: ‘fdata.fontspec.size’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2912 | } else if (fdata.fontspec.size >= 10) { | ^ ncbidrwg.c: In function ‘Nlm_ResetDrawingTools’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_Black’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_Red’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_Green’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_Blue’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_Cyan’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_Magenta’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_Yellow’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_White’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_Gray’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_LtGray’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_DkGray’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c:1360:7: note: ‘i’ was declared here 1360 | int i; | ^ ncbidrwg.c: In function ‘Nlm_SelectColor’: ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1319 | Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue ); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncbidrwg.c: In function ‘Nlm_GetColorRGB’: ncbidrwg.c:1373:10: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1373 | return (Nlm_Uint4)i; | ^~~~~~~~~~~~ rm -f libvibgif.a ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibgif.a ../lib ranlib ../lib/libvibgif.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF algorend.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/viewer3d.h:125, from algorend.c:584: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ algorend.c: In function ‘ColorFromSS’: algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable] 893 | Int2 rsult = 0; | ^~~~~ algorend.c: In function ‘Cn3D_RenWire’: algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable] 1400 | PMLD pmldThis = NULL; | ^~~~~~~~ algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1399 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 1398 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c: In function ‘Cn3D_ColSeqCons’: algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1795 | pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i); | ^ algorend.c: In function ‘RenderObject’: algorend.c:3135:25: warning: variable ‘fZTo’ set but not used [-Wunused-but-set-variable] 3135 | FloatLo fXTo, fYTo, fZTo; | ^~~~ algorend.c:3135:19: warning: variable ‘fYTo’ set but not used [-Wunused-but-set-variable] 3135 | FloatLo fXTo, fYTo, fZTo; | ^~~~ algorend.c:3135:13: warning: variable ‘fXTo’ set but not used [-Wunused-but-set-variable] 3135 | FloatLo fXTo, fYTo, fZTo; | ^~~~ algorend.c:3134:29: warning: variable ‘fZFrom’ set but not used [-Wunused-but-set-variable] 3134 | FloatLo fXFrom, fYFrom, fZFrom; | ^~~~~~ algorend.c:3134:21: warning: variable ‘fYFrom’ set but not used [-Wunused-but-set-variable] 3134 | FloatLo fXFrom, fYFrom, fZFrom; | ^~~~~~ algorend.c:3134:13: warning: variable ‘fXFrom’ set but not used [-Wunused-but-set-variable] 3134 | FloatLo fXFrom, fYFrom, fZFrom; | ^~~~~~ algorend.c: In function ‘RenderLabel’: algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 3393 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c: In function ‘RenderBond’: algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3554 | PMSD pmsdParent = NULL; | ^~~~~~~~~~ algorend.c: In function ‘RenderHalfWormBond’: algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3673 | PMSD pmsdParent; | ^~~~~~~~~~ algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable] 3671 | PMAD pmad0, pmad1, pmad2, pmad3; | ^~~~~ algorend.c: In function ‘RenderAnAtom’: algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable] 3758 | PMAD pmadFrom = NULL; | ^~~~~~~~ algorend.c:3757:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3757 | PMSD pmsdParent = NULL; | ^~~~~~~~~~ algorend.c: In function ‘RenderAllAtom’: algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable] 3829 | int iMenu; | ^~~~~ algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable] 3815 | PVNMB pvnmbThis = NULL; | ^~~~~~~~~ algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable] 3811 | PVNMA pvnmaThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘RenderGraph’: algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable] 4498 | Byte bReservedThis = 0; | ^~~~~~~~~~~~~ algorend.c: In function ‘LabelChainTermini’: algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable] 4772 | PMBD pmbdThis = NULL; | ^~~~~~~~ algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable] 4771 | PVNMB pvnmbThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘RenderMolecule’: algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable] 4871 | PDNMM pdnmmThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘fnARLoop’: algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 5556 | Int2 iTest; | ^~~~~ algorend.c: In function ‘AlgorithmicRendering’: algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable] 5684 | Int2 i = 0; | ^ algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable] 5683 | Int2 Cn3d_LayerNow_sofar = 0; | ^~~~~~~~~~~~~~~~~~~ algorend.c: In function ‘Do3DOrigin’: algorend.c:5756:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 5756 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c:5751:13: warning: variable ‘fTo’ set but not used [-Wunused-but-set-variable] 5751 | FloatLo fTo[3]; | ^~~ algorend.c:5750:13: warning: variable ‘fFrom’ set but not used [-Wunused-but-set-variable] 5750 | FloatLo fFrom[3]; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from algorend.c:598: algorend.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function] 2265 | static void LabelGroupOnOffProc(GrouP g) | ^~~~~~~~~~~~~~~~~~~ algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable] 717 | static Boolean Cn3d_CopyToNode = FALSE; | ^~~~~~~~~~~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: algorend.c: In function ‘RenderLabel’: ../include/pictur3d.h:235:27: warning: ‘iX’ may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | #define AddText3D Nlm_AddText3D | ^~~~~~~~~~~~~ algorend.c:3389:10: note: ‘iX’ was declared here 3389 | Int4 iX, iY, iZ; | ^~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:235:27: warning: ‘iY’ may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | #define AddText3D Nlm_AddText3D | ^~~~~~~~~~~~~ algorend.c:3389:14: note: ‘iY’ was declared here 3389 | Int4 iX, iY, iZ; | ^~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:235:27: warning: ‘iZ’ may be used uninitialized in this function [-Wmaybe-uninitialized] 235 | #define AddText3D Nlm_AddText3D | ^~~~~~~~~~~~~ algorend.c:3389:18: note: ‘iZ’ was declared here 3389 | Int4 iX, iY, iZ; | ^~ algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3448 | fZCen += fZt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3447 | fYCen += fYt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3446 | fXCen += fXt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3449 | fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo); | ~~~~~~~^~~~~~~ algorend.c:3449:77: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3449 | fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo); | ~~~~~~~^~~~~~~ algorend.c:3450:41: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3450 | fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo); | ~~~~~~~^~~~~~~ algorend.c: In function ‘MasterChangeRenderProc.constprop’: algorend.c:1316:33: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1316 | pars->SolventRender = k; | ~~~~~~~~~~~~~~~~~~~~^~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: algorend.c: In function ‘RenderObject’: ../include/pictur3d.h:234:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3136:10: note: ‘iXFrom’ was declared here 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3136:18: note: ‘iYFrom’ was declared here 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3136:26: note: ‘iZFrom’ was declared here 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3137:10: note: ‘iXTo’ was declared here 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3137:16: note: ‘iYTo’ was declared here 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:234:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 234 | #define AddCylinder3D Nlm_AddCylinder3D | ^~~~~~~~~~~~~~~~~ algorend.c:3137:22: note: ‘iZTo’ was declared here 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: algorend.c: In function ‘Do3DOrigin’: ../include/pictur3d.h:232:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5752:10: note: ‘iXFrom’ was declared here 5752 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5752:18: note: ‘iYFrom’ was declared here 5752 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5752:26: note: ‘iZFrom’ was declared here 5752 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5753:10: note: ‘iXTo’ was declared here 5753 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5753:16: note: ‘iYTo’ was declared here 5753 | Int4 iXTo, iYTo, iZTo; | ^~~~ In file included from ../include/viewer3d.h:129, from algorend.c:584: ../include/pictur3d.h:232:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 232 | #define AddLine3D Nlm_AddLine3D | ^~~~~~~~~~~~~ algorend.c:5753:22: note: ‘iZTo’ was declared here 5753 | Int4 iXTo, iYTo, iZTo; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmsel.c:60: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dopen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dopen.c:394: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dopen.c: In function ‘Cn3D_OpenStart’: cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable] 722 | Int4 iBioseq = 0; | ^~~~~~~ cn3dopen.c: In function ‘MMDB_ReadMime’: cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1000 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable] 989 | BiostrucAlignSeqPtr pbsasThis = NULL; | ^~~~~~~~~ cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’: cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 1310 | ButtoN b; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dopen.c:412: cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from cn3dopen.c:413: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable] 431 | static ButtoN Cn3D_bOpenBrowse; | ^~~~~~~~~~~~~~~~ cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable] 430 | static WindoW Cn3D_wOpen; | ^~~~~~~~~~ cn3dopen.c: In function ‘MMDB_ReadMime’: cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 529 | SAM_ReplaceGI(salp); | ^~~~~~~~~~~~~~~~~~~ cn3dopen.c:513:15: note: ‘salp’ was declared here 513 | SeqAlign *salp; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dsave.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dsave.c:157: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dsave.c: In function ‘Cn3D_ExportAsnNow’: cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 375 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable] 372 | BiostrucFeaturePtr pbsfThis; | ^~~~~~~~ cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable] 366 | PMSD pmsdSlave = NULL, pmsdMaster = NULL; | ^~~~~~~~~ cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable] 362 | Boolean iCn3d = TRUE, FirstSlave = FALSE; | ^~~~~~~~~~ cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable] 357 | CharPtr pcSave = NULL; | ^~~~~~ cn3dsave.c: In function ‘Cn3D_SaveBiostruc’: cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 524 | ButtoN b; | ^ cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 523 | GrouP gMS; | ^~~ cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 518 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dsave.c: In function ‘Cn3D_ExportDictNow’: cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable] 598 | CharPtr pcSave = NULL; | ^~~~~~ cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable] 596 | Int4 iCount = 0; | ^~~~~~ cn3dsave.c: In function ‘Cn3D_SaveDictionary’: cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 629 | ButtoN b; | ^ cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 624 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dsave.c: In function ‘Cn3D_SaveSub’: cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 688 | IteM i; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dsave.c:171: cn3dsave.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable] 184 | static ButtoN Cn3D_bFeatOn; | ^~~~~~~~~~~~ In file included from cn3dsave.c:165: ../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable] 119 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable] 118 | static AsnTypePtr at = atx; | ^~ ../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable] 117 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnmime.h12"; | ^~~~~~~~~~~ cn3dsave.c: In function ‘Cn3D_GetSubSet’: cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 289 | isep->next = SeqEntryNew(); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dxprt.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportPDB’: cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 209 | ButtoN b; | ^ cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 208 | GrouP gMS; | ^~~ cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 203 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportKin’: cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 381 | ButtoN b; | ^ cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 380 | GrouP gMS; | ^~~ cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 375 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportSub’: cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 513 | IteM i; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dwin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dwin.c:647: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces] 733 | { | ^ 734 | 255, 255, 255, /* default 0 */ | { } 735 | 255, 20, 147, /* hotpink 1 */ | { } 736 | 255, 0, 255, /* magenta 2 */ | { } 737 | 155, 48, 255, /* purple 3 */ | { } 738 | 0, 0, 255, /* blue 4 */ | { } 739 | 30, 144, 255, /* sky 5 */ | { } 740 | 0, 255, 255, /* cyan 6 */ | { } 741 | 0, 255, 127, /* sea 7 */ | { } 742 | 0, 255, 0, /* green 8 */ | { } 743 | 255, 255, 0, /* yellow 9 */ | { } 744 | 255, 165, 0, /* gold 10 */ | { } 745 | 255, 69, 0, /* orange 11 */ | { } 746 | 255, 0, 0, /* red 12 */ | { } 747 | 255, 114, 86, /* pink 13 */ | { } 748 | 255, 174, 185, /* pinktint 14 */ | { } 749 | 255, 255, 255, /* white 15 */ | { } 750 | 0, 0, 0, /* black 16 */ | { } 751 | 176, 226, 255, /* bluetint 17 */ | { } 752 | 154, 255, 154, /* greentint 18 */ | { } 753 | 255, 236, 139, /* yellowtint 19 */ | { } 754 | 125, 125, 125, /* gray 20 */ | { } 755 | 139, 87, 66, /* brown 21 */ | { } 756 | 255, 0, 0, /* perm colors 22: red */ | { } 757 | 0, 255, 0, /* perm colors 23: green */ | { } 758 | 255, 0, 255, /* perm colors 24: magenta */ | { } 759 | 30, 144, 255, /* perm colors 25: sky */ | { } 760 | 155, 48, 255, /* perm colors 26: purple */ | { } 761 | 0, 255, 0, /* SS colors 27: helix, green */ | { } 762 | 255, 165, 0, /* SS colors 28: strand, gold */ | { } 763 | 255, 69, 0, /* SS colors 29: turn, orange */ | { } 764 | 0, 255, 255, /* SS colors 30: coil, cyan */ | { } 765 | 255, 255, 0, /* highlight colors 31: yellow */ | { } 766 | 0, 0, 0, /* background colors 32: black */ | { } 767 | 160, 82, 45, /* sienna 33 */ | { } 768 | 240, 230, 140, /* khaki 34 */ | { } 769 | 171, 130, 255, /* light purple 35 */ | { } 770 | 255, 200, 0, /* orange yellow 36 */ | { } 771 | 117, 128, 160, /* 37 */ | { } 772 | 5, 53, 239, /* 38 */ | { } 773 | 27, 62, 255, /* 39 */ | { } 774 | 84, 110, 203, /* 40 */ | { } 775 | 216, 77, 84, /* 41 */ | { } 776 | 125, 128, 135, /* 42 */ | { } 777 | 237, 29, 61, /* 43 */ | { } 778 | 184, 118, 120, /* 44 */ | { } 779 | 155, 9, 0, /* 45 */ | { } 780 | 155, 119, 107, /* 46 */ | { } 781 | 80, 110, 196, /* 47 */ | { } 782 | 122, 127, 157, /* 48 */ | { } 783 | 50, 85, 241, /* 49 */ | { } 784 | 201, 93, 91, /* 50 */ | { } 785 | 254, 0, 5, /* 51 */ | { } 786 | 155, 137, 133, /* 52 */ | { } 787 | 3, 53, 246 /* 53 */ | { 788 | }; | } cn3dwin.c: In function ‘Viewer3DGroups’: cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable] 1728 | Int2 groups = 0; | ^~~~~~ cn3dwin.c: In function ‘Viewer3DViewer’: cn3dwin.c:1784:10: warning: unused variable ‘groups’ [-Wunused-variable] 1784 | Int2 groups = 0; | ^~~~~~ cn3dwin.c: In function ‘Cn3D_AlignEdit’: cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable] 1936 | Int2 iCount = 0; | ^~~~~~ cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable] 1935 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable] 1933 | SeqAlignPtr salp = NULL; | ^~~~ cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable] 1931 | PMSD pmsdMaster = NULL, pmsdSlave = NULL; | ^~~~~~~~~ cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable] 1930 | PDNMS pdnmsSlave = NULL; | ^~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/udviewer.h:219, from cn3dwin.c:665: cn3dwin.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/udviewer.h:228, from cn3dwin.c:665: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function] 1626 | static void HLmolecule_MA(MAPtr ma, | ^~~~~~~~~~~~~ cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function] 1428 | static void HLatom_MA(MAPtr ma, | ^~~~~~~~~ cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function] 929 | static void Cn3D_MoveCB(IteM i) | ^~~~~~~~~~~ cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function] 922 | static void Cn3D_ZoomCB(IteM i) | ^~~~~~~~~~~ cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable] 688 | static IteM Cn3D_iModelCtrl = NULL; | ^~~~~~~~~~~~~~~ cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable] 682 | static IteM Cn3D_iLabelCtrl = NULL; | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/cn3dmain.h:182, from cn3dentr.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmsg.c:254: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’: cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable] 593 | OMUserDataPtr omudp = NULL; | ^~~~~ In file included from ../include/sqnutils.h:51, from cn3dmsg.c:267: cn3dmsg.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dmsg.c:271: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmatn.c:173: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmatn.c: In function ‘FindMM’: cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable] 217 | PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL; | ^~~~~~~~~~~~~~ cn3dmatn.c: In function ‘DoMediaHL’: cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable] 249 | Byte MainAtom = 0; | ^~~~~~~~ cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable] 247 | PALD paldThis = NULL; | ^~~~~~~~ cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable] 246 | PVNAL pvnalThis = NULL; | ^~~~~~~~~ cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable] 245 | PMAD pmadThis = NULL; | ^~~~~~~~ cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable] 244 | PVNMA pvnmaThis = NULL; | ^~~~~~~~~ cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’: cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 372 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 371 | PMMD pmmdThis = NULL; | ^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’: cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable] 353 | PDNMG pdnmgThis = NULL; | ^~~~~~~~~ cn3dmodl.c: In function ‘Cn3DCheckHighlighted’: cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable] 364 | PMSD pmsdMaster = NULL, pmsdSlave = NULL; | ^~~~~~~~~ cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’: cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable] 508 | PMGD pmgd = NULL; | ^~~~ cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable] 507 | PDNMG pdnmg = NULL; | ^~~~~ cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 506 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘fnAlignList’: cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable] 996 | Uint2 entityID = 0, itemtype = 0; | ^~~~~~~~ cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable] 996 | Uint2 entityID = 0, itemtype = 0; | ^~~~~~~~ cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable] 995 | SeqIdPtr sipThis = NULL; | ^~~~~~~ cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 993 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’: cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable] 1065 | PDNMG pdnmg = NULL; | ^~~~~ cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 1064 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘SetResidueVisibilities’: cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable] 1201 | PVNMO pvnmoThis = NULL; | ^~~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dmodl.c:319: cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dmodl.c:323: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dmodl.c: In function ‘Cn3D_ListDomainProc’: cn3dmodl.c:413:34: warning: ‘ ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=] 413 | sprintf(MolName, "%4s %2s %2d", | ^~ cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767] 413 | sprintf(MolName, "%4s %2s %2d", | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmodl.c:410:34: warning: ‘ ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=] 410 | sprintf(MolName, "%4s %2s", domaindata[iCount]->pcPDBName, | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dshim.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/cn3dmain.h:182, from cn3dshim.c:131: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmesh.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’: cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 103 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dmesh.c: In function ‘Cn3D_OpenMesh’: cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 151 | ButtoN b; | ^ cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’: cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 111 | fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | &(Mesh.NumTri)); | ~~~~~~~~~~~~~~~ cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 | &(Mesh.Vertices[i].Vertex[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 | &(Mesh.Vertices[i].Vertex[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 | &(Mesh.Vertices[i].Vertex[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 | &(Mesh.Vertices[i].Normal[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | &(Mesh.Vertices[i].Normal[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | &lDummy, &lDummy, &lDummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | &lDummy); | ~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dstyl.c:72: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’: cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable] 459 | SpecialFeatureInfoPtr sfipThis = NULL; | ^~~~~~~~ cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’: cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable] 641 | PARS parsThis = NULL; | ^~~~~~~~ cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 640 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’: cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable] 866 | Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn = | ^~~~~ cn3dstyl.c: In function ‘lFeatureEditedAction’: cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable] 1136 | Int4 val = 0; | ^~~ cn3dstyl.c: In function ‘bFeatureMoveAction’: cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 1153 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘bFeatureEditAction’: cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 1176 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘ModelControls’: cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable] 1364 | PrompT ppt12, ppt13, ppt14; | ^~~~~ cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’: cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable] 1728 | Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound = | ^~~~~~~~~~~~~~ cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable] 1725 | Int2 iMol = 0, iMolCurrent = 0; | ^~~~~~~~~~~ cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’: cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable] 2122 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = | ^~~~~~~~~~ cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable] 2122 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = | ^~~~~~~~~~ cn3dstyl.c: In function ‘GetUserDefinedFeature’: cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable] 2196 | SpecialFeatureInfoPtr sfipThis = NULL; | ^~~~~~~~ cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’: cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable] 2551 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 2549 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable] 2548 | PDNMM pdnmmHead = NULL; | ^~~~~~~~~ cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 2547 | PMSD pmsdThis = NULL; | ^~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dstyl.c:89: cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function] 456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable] 149 | static ButtoN bResetFeatureTitle; | ^~~~~~~~~~~~~~~~~~ cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable] 144 | static PopuP Cn3D_pupModelStyleItem; | ^~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c: In function ‘CopyLocation’: cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized] 496 | rspNew->data.ptrvalue = (VoidPtr) rsipNewHead; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqcons.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from seqcons.c:112: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from seqcons.c:115: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/alignmgr2.h:111, from ../include/actutils.h:105, from seqcons.c:116: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=] 263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] = | ^~~~~~~~~~~~~~~~~~ seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’: seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized] 402 | scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore); | ~~~~~~~~~~^~~~~~~~~~~ seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized] 402 | scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore); | ~~~~~~~~~~^~~~~~~~~~~ rm -f libncbicn3d.a ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbicn3d.a ../lib ranlib ../lib/libncbicn3d.a mv algorend.o algorend.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/shim3d.h:153, from algorend.c:582: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ algorend.c: In function ‘Cn3D_SetOGLFont’: algorend.c:791:24: warning: unused variable ‘currentUnderlined’ [-Wunused-variable] 791 | currentUnderlined = FALSE; | ^~~~~~~~~~~~~~~~~ algorend.c:790:45: warning: unused variable ‘currentItalic’ [-Wunused-variable] 790 | static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE, | ^~~~~~~~~~~~~ algorend.c:790:24: warning: unused variable ‘currentBold’ [-Wunused-variable] 790 | static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE, | ^~~~~~~~~~~ algorend.c:789:40: warning: unused variable ‘currentSize’ [-Wunused-variable] 789 | static Nlm_Int2 currentIndex = -1, currentSize = -1; | ^~~~~~~~~~~ algorend.c:789:21: warning: unused variable ‘currentIndex’ [-Wunused-variable] 789 | static Nlm_Int2 currentIndex = -1, currentSize = -1; | ^~~~~~~~~~~~ algorend.c: In function ‘ColorFromSS’: algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable] 893 | Int2 rsult = 0; | ^~~~~ algorend.c: In function ‘Cn3D_RenWire’: algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable] 1400 | PMLD pmldThis = NULL; | ^~~~~~~~ algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1399 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 1398 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c: In function ‘Cn3D_ColSeqCons’: algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1795 | pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i); | ^ algorend.c: In function ‘MasterChangeLabelsProc’: algorend.c:2075:44: warning: unused variable ‘TopOn’ [-Wunused-variable] 2075 | Boolean NumOn, NameOn, PDBOn, WhiteOn, TopOn; | ^~~~~ algorend.c:2073:13: warning: unused variable ‘k’ [-Wunused-variable] 2073 | Int2 i, k, nameval; | ^ algorend.c: In function ‘ResetLabelCtrls’: algorend.c:2272:25: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 2272 | Int2 i, val, style, size, termStyle; | ^~~~ algorend.c: In function ‘LabelControls’: algorend.c:2434:19: warning: variable ‘ppt11’ set but not used [-Wunused-but-set-variable] 2434 | PrompT ppt10, ppt11; | ^~~~~ algorend.c:2431:36: warning: unused variable ‘ppt7’ [-Wunused-variable] 2431 | PrompT ppt1, ppt2, ppt3, ppt4, ppt7, ppt8, ppt9; | ^~~~ algorend.c: In function ‘Cn3D_SetQualityFromAppParams’: algorend.c:2649:9: warning: unused variable ‘i’ [-Wunused-variable] 2649 | int i; | ^ algorend.c: In function ‘OGL_Quality’: algorend.c:2769:23: warning: unused variable ‘q’ [-Wunused-variable] 2769 | Nlm_PrompT bp, p, q; | ^ algorend.c:2769:20: warning: variable ‘p’ set but not used [-Wunused-but-set-variable] 2769 | Nlm_PrompT bp, p, q; | ^ algorend.c:2769:16: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable] 2769 | Nlm_PrompT bp, p, q; | ^~ algorend.c: In function ‘RenderControls’: algorend.c:2893:12: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable] 2893 | PrompT ppt5; | ^~~~ algorend.c: In function ‘RenderObject’: algorend.c:3138:10: warning: unused variable ‘iCylRadius’ [-Wunused-variable] 3138 | Int4 iCylRadius; | ^~~~~~~~~~ algorend.c:3137:22: warning: unused variable ‘iZTo’ [-Wunused-variable] 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ algorend.c:3137:16: warning: unused variable ‘iYTo’ [-Wunused-variable] 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ algorend.c:3137:10: warning: unused variable ‘iXTo’ [-Wunused-variable] 3137 | Int4 iXTo, iYTo, iZTo; | ^~~~ algorend.c:3136:26: warning: unused variable ‘iZFrom’ [-Wunused-variable] 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ algorend.c:3136:18: warning: unused variable ‘iYFrom’ [-Wunused-variable] 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ algorend.c:3136:10: warning: unused variable ‘iXFrom’ [-Wunused-variable] 3136 | Int4 iXFrom, iYFrom, iZFrom; | ^~~~~~ algorend.c:3133:10: warning: unused variable ‘i’ [-Wunused-variable] 3133 | Int4 i = 0; | ^ algorend.c: In function ‘RenderLabel’: algorend.c:3394:10: warning: variable ‘paldPrim’ set but not used [-Wunused-but-set-variable] 3394 | PALD paldPrim = NULL; | ^~~~~~~~ algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 3393 | PMSD pmsdThis = NULL; | ^~~~~~~~ algorend.c:3389:18: warning: unused variable ‘iZ’ [-Wunused-variable] 3389 | Int4 iX, iY, iZ; | ^~ algorend.c:3389:14: warning: unused variable ‘iY’ [-Wunused-variable] 3389 | Int4 iX, iY, iZ; | ^~ algorend.c:3389:10: warning: unused variable ‘iX’ [-Wunused-variable] 3389 | Int4 iX, iY, iZ; | ^~ algorend.c: In function ‘RenderBond’: algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3554 | PMSD pmsdParent = NULL; | ^~~~~~~~~~ algorend.c: In function ‘RenderHalfWormBond’: algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable] 3673 | PMSD pmsdParent; | ^~~~~~~~~~ algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable] 3671 | PMAD pmad0, pmad1, pmad2, pmad3; | ^~~~~ algorend.c: In function ‘RenderAnAtom’: algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable] 3758 | PMAD pmadFrom = NULL; | ^~~~~~~~ algorend.c: In function ‘RenderAllAtom’: algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable] 3829 | int iMenu; | ^~~~~ algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable] 3815 | PVNMB pvnmbThis = NULL; | ^~~~~~~~~ algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable] 3811 | PVNMA pvnmaThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘RenderGraph’: algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable] 4498 | Byte bReservedThis = 0; | ^~~~~~~~~~~~~ algorend.c: In function ‘LabelChainTermini’: algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable] 4772 | PMBD pmbdThis = NULL; | ^~~~~~~~ algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable] 4771 | PVNMB pvnmbThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘RenderMolecule’: algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable] 4871 | PDNMM pdnmmThis = NULL; | ^~~~~~~~~ algorend.c: In function ‘fnARLoop’: algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable] 5556 | Int2 iTest; | ^~~~~ algorend.c: In function ‘AlgorithmicRendering’: algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable] 5684 | Int2 i = 0; | ^ algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable] 5683 | Int2 Cn3d_LayerNow_sofar = 0; | ^~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from algorend.c:598: algorend.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ algorend.c:789:21: warning: ‘currentIndex’ defined but not used [-Wunused-variable] 789 | static Nlm_Int2 currentIndex = -1, currentSize = -1; | ^~~~~~~~~~~~ algorend.c:789:40: warning: ‘currentSize’ defined but not used [-Wunused-variable] 789 | static Nlm_Int2 currentIndex = -1, currentSize = -1; | ^~~~~~~~~~~ algorend.c:790:24: warning: ‘currentBold’ defined but not used [-Wunused-variable] 790 | static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE, | ^~~~~~~~~~~ algorend.c:790:45: warning: ‘currentItalic’ defined but not used [-Wunused-variable] 790 | static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE, | ^~~~~~~~~~~~~ algorend.c:791:24: warning: ‘currentUnderlined’ defined but not used [-Wunused-variable] 791 | currentUnderlined = FALSE; | ^~~~~~~~~~~~~~~~~ algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function] 2265 | static void LabelGroupOnOffProc(GrouP g) | ^~~~~~~~~~~~~~~~~~~ algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable] 717 | static Boolean Cn3d_CopyToNode = FALSE; | ^~~~~~~~~~~~~~~ algorend.c: In function ‘MasterChangeRenderProc’: algorend.c:1295:29: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1295 | pars->PBBRender = k; | ~~~~~~~~~~~~~~~~^~~ algorend.c: In function ‘RenderLabel’: algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3448 | fZCen += fZt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3447 | fYCen += fYt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3446 | fXCen += fXt / l; | ~~~~~~^~~~~~~~~~ algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3449 | fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo); | ~~~~~~~^~~~~~~ algorend.c:3438:30: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3438 | fYCen = fYTo + (fYTo - fYFrom) / 2.0; | ~~~~~~^~~~~~~~~ algorend.c:3437:30: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3437 | fXCen = fXTo + (fXTo - fXFrom) / 2.0; | ~~~~~~^~~~~~~~~ algorend.c:3449:58: warning: ‘fZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3449 | fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo); | ~~~~~~~^~~~~~~~~ algorend.c:3438:30: warning: ‘fYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3438 | fYCen = fYTo + (fYTo - fYFrom) / 2.0; | ~~~~~~^~~~~~~~~ algorend.c:3437:30: warning: ‘fXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3437 | fXCen = fXTo + (fXTo - fXFrom) / 2.0; | ~~~~~~^~~~~~~~~ mv algorend.o algorend.glo mv algorend.tmp algorend.o mv cn3dmsel.o cn3dmsel.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmsel.c:60: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv cn3dmsel.o cn3dmsel.glo mv cn3dmsel.tmp cn3dmsel.o mv cn3dopen.o cn3dopen.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dopen.c:394: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dopen.c: In function ‘Cn3D_OpenStart’: cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable] 722 | Int4 iBioseq = 0; | ^~~~~~~ cn3dopen.c: In function ‘MMDB_ReadMime’: cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 1000 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable] 989 | BiostrucAlignSeqPtr pbsasThis = NULL; | ^~~~~~~~~ cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’: cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 1310 | ButtoN b; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dopen.c:412: cn3dopen.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from cn3dopen.c:413: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable] 431 | static ButtoN Cn3D_bOpenBrowse; | ^~~~~~~~~~~~~~~~ cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable] 430 | static WindoW Cn3D_wOpen; | ^~~~~~~~~~ cn3dopen.c: In function ‘MMDB_ReadMime’: cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 529 | SAM_ReplaceGI(salp); | ^~~~~~~~~~~~~~~~~~~ cn3dopen.c:513:15: note: ‘salp’ was declared here 513 | SeqAlign *salp; | ^~~~ mv cn3dopen.o cn3dopen.glo mv cn3dopen.tmp cn3dopen.o mv cn3dsave.o cn3dsave.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dsave.c:157: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dsave.c: In function ‘Cn3D_AddMatrix’: cn3dsave.c:206:41: warning: unused variable ‘bsfsp_new’ [-Wunused-variable] 206 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_new = NULL; | ^~~~~~~~~ cn3dsave.c: In function ‘Cn3D_ExportAsnNow’: cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable] 375 | PDNML pdnmlThis = NULL; | ^~~~~~~~~ cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable] 372 | BiostrucFeaturePtr pbsfThis; | ^~~~~~~~ cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable] 366 | PMSD pmsdSlave = NULL, pmsdMaster = NULL; | ^~~~~~~~~ cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable] 362 | Boolean iCn3d = TRUE, FirstSlave = FALSE; | ^~~~~~~~~~ cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable] 357 | CharPtr pcSave = NULL; | ^~~~~~ cn3dsave.c: In function ‘Cn3D_SaveBiostruc’: cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 524 | ButtoN b; | ^ cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 523 | GrouP gMS; | ^~~ cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 518 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dsave.c: In function ‘Cn3D_ExportDictNow’: cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable] 598 | CharPtr pcSave = NULL; | ^~~~~~ cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable] 596 | Int4 iCount = 0; | ^~~~~~ cn3dsave.c: In function ‘Cn3D_SaveDictionary’: cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 629 | ButtoN b; | ^ cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 624 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dsave.c: In function ‘Cn3D_SaveSub’: cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 688 | IteM i; | ^ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dsave.c:171: cn3dsave.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable] 184 | static ButtoN Cn3D_bFeatOn; | ^~~~~~~~~~~~ In file included from cn3dsave.c:165: ../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable] 119 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable] 118 | static AsnTypePtr at = atx; | ^~ ../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable] 117 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnmime.h12"; | ^~~~~~~~~~~ cn3dsave.c: In function ‘Cn3D_GetSubSet’: cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized] 289 | isep->next = SeqEntryNew(); | ~~~~~~~~~~~^~~~~~~~~~~~~~~ mv cn3dsave.o cn3dsave.glo mv cn3dsave.tmp cn3dsave.o mv cn3dxprt.o cn3dxprt.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dxprt.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportPDB’: cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 209 | ButtoN b; | ^ cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 208 | GrouP gMS; | ^~~ cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 203 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportKin’: cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 381 | ButtoN b; | ^ cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable] 380 | GrouP gMS; | ^~~ cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable] 375 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dxprt.c: In function ‘Cn3D_ExportSub’: cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 513 | IteM i; | ^ mv cn3dxprt.o cn3dxprt.glo mv cn3dxprt.tmp cn3dxprt.o mv cn3dwin.o cn3dwin.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dwin.c:647: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces] 733 | { | ^ 734 | 255, 255, 255, /* default 0 */ | { } 735 | 255, 20, 147, /* hotpink 1 */ | { } 736 | 255, 0, 255, /* magenta 2 */ | { } 737 | 155, 48, 255, /* purple 3 */ | { } 738 | 0, 0, 255, /* blue 4 */ | { } 739 | 30, 144, 255, /* sky 5 */ | { } 740 | 0, 255, 255, /* cyan 6 */ | { } 741 | 0, 255, 127, /* sea 7 */ | { } 742 | 0, 255, 0, /* green 8 */ | { } 743 | 255, 255, 0, /* yellow 9 */ | { } 744 | 255, 165, 0, /* gold 10 */ | { } 745 | 255, 69, 0, /* orange 11 */ | { } 746 | 255, 0, 0, /* red 12 */ | { } 747 | 255, 114, 86, /* pink 13 */ | { } 748 | 255, 174, 185, /* pinktint 14 */ | { } 749 | 255, 255, 255, /* white 15 */ | { } 750 | 0, 0, 0, /* black 16 */ | { } 751 | 176, 226, 255, /* bluetint 17 */ | { } 752 | 154, 255, 154, /* greentint 18 */ | { } 753 | 255, 236, 139, /* yellowtint 19 */ | { } 754 | 125, 125, 125, /* gray 20 */ | { } 755 | 139, 87, 66, /* brown 21 */ | { } 756 | 255, 0, 0, /* perm colors 22: red */ | { } 757 | 0, 255, 0, /* perm colors 23: green */ | { } 758 | 255, 0, 255, /* perm colors 24: magenta */ | { } 759 | 30, 144, 255, /* perm colors 25: sky */ | { } 760 | 155, 48, 255, /* perm colors 26: purple */ | { } 761 | 0, 255, 0, /* SS colors 27: helix, green */ | { } 762 | 255, 165, 0, /* SS colors 28: strand, gold */ | { } 763 | 255, 69, 0, /* SS colors 29: turn, orange */ | { } 764 | 0, 255, 255, /* SS colors 30: coil, cyan */ | { } 765 | 255, 255, 0, /* highlight colors 31: yellow */ | { } 766 | 0, 0, 0, /* background colors 32: black */ | { } 767 | 160, 82, 45, /* sienna 33 */ | { } 768 | 240, 230, 140, /* khaki 34 */ | { } 769 | 171, 130, 255, /* light purple 35 */ | { } 770 | 255, 200, 0, /* orange yellow 36 */ | { } 771 | 117, 128, 160, /* 37 */ | { } 772 | 5, 53, 239, /* 38 */ | { } 773 | 27, 62, 255, /* 39 */ | { } 774 | 84, 110, 203, /* 40 */ | { } 775 | 216, 77, 84, /* 41 */ | { } 776 | 125, 128, 135, /* 42 */ | { } 777 | 237, 29, 61, /* 43 */ | { } 778 | 184, 118, 120, /* 44 */ | { } 779 | 155, 9, 0, /* 45 */ | { } 780 | 155, 119, 107, /* 46 */ | { } 781 | 80, 110, 196, /* 47 */ | { } 782 | 122, 127, 157, /* 48 */ | { } 783 | 50, 85, 241, /* 49 */ | { } 784 | 201, 93, 91, /* 50 */ | { } 785 | 254, 0, 5, /* 51 */ | { } 786 | 155, 137, 133, /* 52 */ | { } 787 | 3, 53, 246 /* 53 */ | { 788 | }; | } cn3dwin.c: In function ‘Cn3D_Default_HLColor’: cn3dwin.c:982:27: warning: variable ‘colorB’ set but not used [-Wunused-but-set-variable] 982 | Uint1 colorR, colorG, colorB; | ^~~~~~ cn3dwin.c:982:19: warning: variable ‘colorG’ set but not used [-Wunused-but-set-variable] 982 | Uint1 colorR, colorG, colorB; | ^~~~~~ cn3dwin.c:982:11: warning: variable ‘colorR’ set but not used [-Wunused-but-set-variable] 982 | Uint1 colorR, colorG, colorB; | ^~~~~~ cn3dwin.c: In function ‘Cn3D_RedrawEx’: cn3dwin.c:1251:19: warning: unused variable ‘iColor’ [-Wunused-variable] 1251 | DDV_ColorCell iColor; | ^~~~~~ cn3dwin.c: In function ‘fnPreCHLresidue’: cn3dwin.c:1543:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 1543 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dwin.c: In function ‘Viewer3DGroups’: cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable] 1728 | Int2 groups = 0; | ^~~~~~ cn3dwin.c: In function ‘Cn3D_AlignEdit’: cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable] 1936 | Int2 iCount = 0; | ^~~~~~ cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable] 1935 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable] 1933 | SeqAlignPtr salp = NULL; | ^~~~ cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable] 1931 | PMSD pmsdMaster = NULL, pmsdSlave = NULL; | ^~~~~~~~~ cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable] 1930 | PDNMS pdnmsSlave = NULL; | ^~~~~~~~~~ cn3dwin.c: In function ‘Cn3DWin’: cn3dwin.c:2364:5: warning: implicit declaration of function ‘Nlm_SetOGLContext’; did you mean ‘Nlm_InitAppContext’? [-Wimplicit-function-declaration] 2364 | Nlm_SetOGLContext(NULL, NULL, NULL, NULL); | ^~~~~~~~~~~~~~~~~ | Nlm_InitAppContext In file included from ../include/sqnutils.h:51, from ../include/udviewer.h:219, from cn3dwin.c:665: cn3dwin.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/udviewer.h:228, from cn3dwin.c:665: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function] 1626 | static void HLmolecule_MA(MAPtr ma, | ^~~~~~~~~~~~~ cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function] 1428 | static void HLatom_MA(MAPtr ma, | ^~~~~~~~~ cn3dwin.c:1349:25: warning: ‘DoHighlightSeg’ defined but not used [-Wunused-function] 1349 | static void LIBCALLBACK DoHighlightSeg(PFB pfbThis, | ^~~~~~~~~~~~~~ cn3dwin.c:979:13: warning: ‘Cn3D_Default_HLColor’ defined but not used [-Wunused-function] 979 | static void Cn3D_Default_HLColor(IteM i) | ^~~~~~~~~~~~~~~~~~~~ cn3dwin.c:953:13: warning: ‘Cn3D_BgColor’ defined but not used [-Wunused-function] 953 | static void Cn3D_BgColor(IteM i) | ^~~~~~~~~~~~ cn3dwin.c:936:13: warning: ‘Cn3D_Default_BgColor’ defined but not used [-Wunused-function] 936 | static void Cn3D_Default_BgColor(IteM i) | ^~~~~~~~~~~~~~~~~~~~ cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function] 929 | static void Cn3D_MoveCB(IteM i) | ^~~~~~~~~~~ cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function] 922 | static void Cn3D_ZoomCB(IteM i) | ^~~~~~~~~~~ cn3dwin.c:719:14: warning: ‘Cn3D_gViewCtrl’ defined but not used [-Wunused-variable] 719 | static GrouP Cn3D_gViewCtrl; | ^~~~~~~~~~~~~~ cn3dwin.c:713:14: warning: ‘Cn3D_gViewer’ defined but not used [-Wunused-variable] 713 | static GrouP Cn3D_gViewer; | ^~~~~~~~~~~~ cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable] 688 | static IteM Cn3D_iModelCtrl = NULL; | ^~~~~~~~~~~~~~~ cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable] 682 | static IteM Cn3D_iLabelCtrl = NULL; | ^~~~~~~~~~~~~~~ cn3dwin.c:676:14: warning: ‘Cn3D_Vy’ defined but not used [-Wunused-variable] 676 | static Uint2 Cn3D_Vy, Cn3D_Rx; | ^~~~~~~ mv cn3dwin.o cn3dwin.glo mv cn3dwin.tmp cn3dwin.o mv cn3dentr.o cn3dentr.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/cn3dmain.h:182, from cn3dentr.c:81: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mv cn3dentr.o cn3dentr.glo mv cn3dentr.tmp cn3dentr.o mv cn3dmsg.o cn3dmsg.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmsg.c:254: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’: cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable] 593 | OMUserDataPtr omudp = NULL; | ^~~~~ In file included from ../include/sqnutils.h:51, from cn3dmsg.c:267: cn3dmsg.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dmsg.c:271: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv cn3dmsg.o cn3dmsg.glo mv cn3dmsg.tmp cn3dmsg.o mv cn3dmatn.o cn3dmatn.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmatn.c:173: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmatn.c: In function ‘FindMM’: cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable] 217 | PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL; | ^~~~~~~~~~~~~~ cn3dmatn.c: In function ‘DoMediaHL’: cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable] 249 | Byte MainAtom = 0; | ^~~~~~~~ cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable] 247 | PALD paldThis = NULL; | ^~~~~~~~ cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable] 246 | PVNAL pvnalThis = NULL; | ^~~~~~~~~ cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable] 245 | PMAD pmadThis = NULL; | ^~~~~~~~ cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable] 244 | PVNMA pvnmaThis = NULL; | ^~~~~~~~~ cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’: cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 372 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 371 | PMMD pmmdThis = NULL; | ^~~~~~~~ mv cn3dmatn.o cn3dmatn.glo mv cn3dmatn.tmp cn3dmatn.o mv cn3dmodl.o cn3dmodl.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’: cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable] 353 | PDNMG pdnmgThis = NULL; | ^~~~~~~~~ cn3dmodl.c: In function ‘Cn3DCheckHighlighted’: cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable] 364 | PMSD pmsdMaster = NULL, pmsdSlave = NULL; | ^~~~~~~~~ cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’: cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable] 508 | PMGD pmgd = NULL; | ^~~~ cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable] 507 | PDNMG pdnmg = NULL; | ^~~~~ cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 506 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘fnAlignList’: cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable] 996 | Uint2 entityID = 0, itemtype = 0; | ^~~~~~~~ cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable] 996 | Uint2 entityID = 0, itemtype = 0; | ^~~~~~~~ cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable] 995 | SeqIdPtr sipThis = NULL; | ^~~~~~~ cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 993 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’: cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable] 1065 | PDNMG pdnmg = NULL; | ^~~~~ cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 1064 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dmodl.c: In function ‘SetResidueVisibilities’: cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable] 1201 | PVNMO pvnmoThis = NULL; | ^~~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dmodl.c:319: cn3dmodl.c: At top level: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from cn3dmodl.c:323: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cn3dmodl.c: In function ‘Cn3D_ListDomainProc’: cn3dmodl.c:413:34: warning: ‘ ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=] 413 | sprintf(MolName, "%4s %2s %2d", | ^~ cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767] 413 | sprintf(MolName, "%4s %2s %2d", | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmodl.c:410:34: warning: ‘ ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=] 410 | sprintf(MolName, "%4s %2s", domaindata[iCount]->pcPDBName, | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cn3dmodl.c:302: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv cn3dmodl.o cn3dmodl.glo mv cn3dmodl.tmp cn3dmodl.o mv cn3dshim.o cn3dshim.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/cn3dmain.h:182, from cn3dshim.c:131: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dshim.c: In function ‘Cn3D_Size’: cn3dshim.c:413:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 413 | PMSD pmsdThis; | ^~~~~~~~ cn3dshim.c:412:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable] 412 | PDNMS pdnmsSlave; | ^~~~~~~~~~ cn3dshim.c: In function ‘Cn3D_SizeCB’: cn3dshim.c:399:36: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations] 399 | BoundBox->x[i + 1]) BoundBox->x[i + 1] = | ~~~~~~~~~~~^~~~~~~ cn3dshim.c:395:17: note: within this loop 395 | for (i = 0; i < 6; i += 2) { /* check to see if the atom lies outside the bound box */ | ^~~ cn3dshim.c:391:36: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations] 391 | BoundBox->x[i] = pflvDataThis[i / (int) 2]; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dshim.c:390:17: note: within this loop 390 | for (i = 0; i < 6; i++) { | ^~~ mv cn3dshim.o cn3dshim.glo mv cn3dshim.tmp cn3dshim.o mv cn3dmesh.o cn3dmesh.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from cn3dmesh.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’: cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 103 | PMSD pmsdThis = NULL; | ^~~~~~~~ cn3dmesh.c: In function ‘Cn3D_OpenMesh’: cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 151 | ButtoN b; | ^ cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’: cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 111 | fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | &(Mesh.NumTri)); | ~~~~~~~~~~~~~~~ cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 | &(Mesh.Vertices[i].Vertex[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 | &(Mesh.Vertices[i].Vertex[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 | &(Mesh.Vertices[i].Vertex[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 | &(Mesh.Vertices[i].Normal[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | &(Mesh.Vertices[i].Normal[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | &lDummy, &lDummy, &lDummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | &lDummy); | ~~~~~~~~ mv cn3dmesh.o cn3dmesh.glo mv cn3dmesh.tmp cn3dmesh.o mv cn3dstyl.o cn3dstyl.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dstyl.c:72: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’: cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable] 459 | SpecialFeatureInfoPtr sfipThis = NULL; | ^~~~~~~~ cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’: cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable] 641 | PARS parsThis = NULL; | ^~~~~~~~ cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 640 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’: cn3dstyl.c:867:16: warning: unused variable ‘TopOn’ [-Wunused-variable] 867 | FALSE, TopOn = FALSE; | ^~~~~ cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable] 866 | Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn = | ^~~~~ cn3dstyl.c:864:17: warning: unused variable ‘k’ [-Wunused-variable] 864 | Int2 i = 0, k = 0, nameval = 0; | ^ cn3dstyl.c: In function ‘ModelSetLabelCtrls’: cn3dstyl.c:1059:37: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 1059 | Int2 i = 0, val = 0, style = 0, size = 0; | ^~~~ cn3dstyl.c: In function ‘lFeatureEditedAction’: cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable] 1136 | Int4 val = 0; | ^~~ cn3dstyl.c: In function ‘bFeatureMoveAction’: cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 1153 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘bFeatureEditAction’: cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable] 1176 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c: In function ‘ModelControls’: cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable] 1364 | PrompT ppt12, ppt13, ppt14; | ^~~~~ cn3dstyl.c:1363:9: warning: unused variable ‘ppt11’ [-Wunused-variable] 1363 | ppt11; | ^~~~~ cn3dstyl.c:1362:60: warning: unused variable ‘ppt9’ [-Wunused-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable] 1362 | PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10, | ^~~~ cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’: cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable] 1728 | Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound = | ^~~~~~~~~~~~~~ cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable] 1725 | Int2 iMol = 0, iMolCurrent = 0; | ^~~~~~~~~~~ cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’: cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable] 2122 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = | ^~~~~~~~~~ cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable] 2122 | BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = | ^~~~~~~~~~ cn3dstyl.c: In function ‘GetUserDefinedFeature’: cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable] 2196 | SpecialFeatureInfoPtr sfipThis = NULL; | ^~~~~~~~ cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’: cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable] 2551 | SpecialFeaturePtr sfpThis = NULL; | ^~~~~~~ cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable] 2549 | PMMD pmmdThis = NULL; | ^~~~~~~~ cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable] 2548 | PDNMM pdnmmHead = NULL; | ^~~~~~~~~ cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable] 2547 | PMSD pmsdThis = NULL; | ^~~~~~~~ In file included from ../include/cn3dopen.h:111, from cn3dstyl.c:89: cn3dstyl.c: At top level: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function] 456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable] 149 | static ButtoN bResetFeatureTitle; | ^~~~~~~~~~~~~~~~~~ cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable] 144 | static PopuP Cn3D_pupModelStyleItem; | ^~~~~~~~~~~~~~~~~~~~~~ cn3dstyl.c: In function ‘CopyLocation’: cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized] 496 | rspNew->data.ptrvalue = (VoidPtr) rsipNewHead; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ mv cn3dstyl.o cn3dstyl.glo mv cn3dstyl.tmp cn3dstyl.o mv seqcons.o seqcons.tmp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from seqcons.c:112: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from seqcons.c:115: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/alignmgr2.h:111, from ../include/actutils.h:105, from seqcons.c:116: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=] 263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] = | ^~~~~~~~~~~~~~~~~~ seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’: seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized] 402 | scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore); | ~~~~~~~~~~^~~~~~~~~~~ seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized] 402 | scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore); | ~~~~~~~~~~^~~~~~~~~~~ mv seqcons.o seqcons.glo mv seqcons.tmp seqcons.o rm -f libncbicn3dOGL.a ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbicn3dOGL.a ../lib ranlib ../lib/libncbicn3dOGL.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_engine.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_extend.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_filter.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hits.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_itree.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_lookup.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_message.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_options.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seg.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_sw.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_setup.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_stat.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_traceback.c blast_traceback.c: In function ‘BLAST_ComputeTraceback_MT’: blast_traceback.c:1500: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1500 | #pragma omp parallel for default(none) num_threads(actual_num_threads) schedule(guided) if (actual_num_threads > 1) \ | blast_traceback.c:1524: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1524 | #pragma omp critical(retval) | blast_traceback.c:1530: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 1530 | #pragma omp flush(has_been_interrupted) | blast_traceback.c:1561: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1561 | #pragma omp critical(tback_gen_code) | blast_traceback.c:1591: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1591 | #pragma omp critical(retval) | blast_traceback.c:1631: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1631 | #pragma omp critical(tback_gen_code) | arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_util.c blast_util.c: In function ‘BlastProgram2Number’: blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 306 | else if (strcasecmp("mapper", program) == 0) | ^~ blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 309 | return 0; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gapinfo.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF greedy_align.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF link_hsps.c link_hsps.c: In function ‘s_FwdCompareHSPs’: link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 133 | else if (h1->context > h2->context) | ^~ link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 136 | if (h1->query.offset < h2->query.offset) | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF na_ungapped.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_math.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_std.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pattern.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_extend.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_lookup.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup_util.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_encoding.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_psi.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_kappa.c blast_kappa.c: In function ‘Blast_RedoAlignmentCore_MT’: blast_kappa.c:3407: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 3407 | #pragma omp parallel \ | blast_kappa.c:3426: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 3426 | #pragma omp for schedule(static) | blast_kappa.c:3428: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3428 | #pragma omp flush(interrupt) | blast_kappa.c:3489: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3489 | #pragma omp critical(intrpt) | blast_kappa.c:3491: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3491 | #pragma omp flush(interrupt) | blast_kappa.c:3504: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3504 | #pragma omp critical(intrpt) | blast_kappa.c:3506: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3506 | #pragma omp flush(interrupt) | blast_kappa.c:3722: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3722 | #pragma omp critical(intrpt) | blast_kappa.c:3724: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3724 | #pragma omp flush(interrupt) | blast_kappa.c:3730: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 3730 | #pragma omp barrier | arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_parameters.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_posit.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_program.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_query_info.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_tune.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c blast_nalookup.c: In function ‘s_NaHashLookupScanSubjectForWordCounts’: blast_nalookup.c:1850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1850 | #pragma omp parallel for if (num_threads > 1) num_threads(num_threads) \ | blast_nalookup.c:1858: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1858 | #pragma omp critical (get_sequence_for_word_counts) | arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_aascan.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_nascan.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF split_query.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF index_ungapped.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hspstream_mt_utils.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_traceback_mt_priv.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF boost_erf.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jumper.c rm -f libblast.a ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o blast_hspstream_mt_utils.o blast_traceback_mt_priv.o boost_erf.o jumper.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libblast.a ../lib ranlib ../lib/libblast.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_api.c: In function ‘s_BlastRPSInfoInit’: blast_api.c:149:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fscanf(auxfile, "%s", buffer); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:151:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | fscanf(auxfile, "%d", &info->aux_info.gap_open_penalty); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:152:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 152 | fscanf(auxfile, "%d", &info->aux_info.gap_extend_penalty); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:153:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fscanf(auxfile, "%le", &info->aux_info.ungapped_k); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:154:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fscanf(auxfile, "%le", &info->aux_info.ungapped_h); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:155:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fscanf(auxfile, "%d", &info->aux_info.max_db_seq_length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:156:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | fscanf(auxfile, "%d", &info->aux_info.db_length); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:157:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 157 | fscanf(auxfile, "%lf", &info->aux_info.scale_factor); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:161:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fscanf(auxfile, "%d", &seq_size); /* not used */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:162:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fscanf(auxfile, "%le", &info->aux_info.karlin_k[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c: In function ‘s_BlastFindMatrixPath’: blast_api.c:502:39: warning: ‘%s’ directive writing up to 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 502 | sprintf(buf_full, "%s%s%s%s", buf_path, | ^~ 503 | alphabet_type, DIRDELIMSTR, matrix_name); | ~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4099) into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:484:35: warning: ‘data’ directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] 484 | sprintf(buf_path_2, "%s%sdata%s", buf_path, DIRDELIMSTR, DIRDELIMSTR); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:470:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 470 | sprintf(buf_path_2, "%s%s", buf_path, DIRDELIMSTR); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4097 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c: In function ‘s_BlastRPSInfoInit’: blast_api.c:104:25: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 104 | sprintf(filename, "%s.loo", (char *)pathname); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:123:25: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 123 | sprintf(filename, "%s.rps", (char *)pathname); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast_api.c:144:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 144 | sprintf(filename, "%s.aux", (char *)pathname); | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from ../include/algo/blast/api/blast_api.h:47, from blast_api.c:38: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_input.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from blast_input.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_input.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: blast_input.c,v 1.32 2008/06/09 17:28:41 madden Exp $"; | ^~~~~ blast_input.c: In function ‘BLAST_GetQuerySeqLoc’: blast_input.c:98:21: warning: ‘%ld’ directive writing between 1 and 7 bytes into a region of size 4 [-Wformat-overflow=] 98 | sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES)); | ^~~ blast_input.c:98:20: note: directive argument in the range [-131080, 131080] 98 | sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES)); | ^~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from blast_input.c:34: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 8 bytes into a destination of size 4 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_format.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_format.h:45, from blast_format.c:38: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_format.c: In function ‘s_MBXmlInit’: blast_format.c:255:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 255 | Boolean retval = FALSE; | ^~~~~~ blast_format.c: In function ‘s_LoadMatrix’: blast_format.c:673:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] 673 | ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j]; | ~~~~~~^~~ blast_format.c:673:38: warning: array subscript has type ‘char’ [-Wchar-subscripts] 673 | ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j]; | ~~~~~~^~~ At top level: blast_format.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 35 | static char const rcsid[] = "$Id: blast_format.c,v 1.120 2012/10/10 14:07:01 fongah2 Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/ncbithr.h:87, from blast_mtlock.c:39: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_mtlock.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 35 | static char const rcsid[] = | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_options_api.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_prelim.c blast_prelim.c: In function ‘Blast_PrelimSearchThreadRun’: blast_prelim.c:100:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 100 | Int2 status = 0; | ^~~~~~ At top level: blast_prelim.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 34 | static char const rcsid[] = "$Id: blast_prelim.c,v 1.8 2006/05/24 21:17:50 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_returns.c blast_returns.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 32 | static char const rcsid[] = "$Id: blast_returns.c,v 1.39 2010/06/10 13:44:46 madden Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seq.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from blast_seq.c:34: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_seq.c: In function ‘s_SeqLocFillSequenceBuffer’: blast_seq.c:529:10: warning: variable ‘seq_code’ set but not used [-Wunused-but-set-variable] 529 | Uint1 seq_code, strand; | ^~~~~~~~ At top level: blast_seq.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: blast_seq.c,v 1.89 2008/06/09 17:29:14 madden Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/readdb.h:757, from ../include/algo/blast/api/blast_seqalign.h:42, from blast_seqalign.c:35: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_seqalign.c: In function ‘s_HSPListToSeqAlignUngapped’: blast_seqalign.c:343:26: warning: variable ‘hspset_cnt_old’ set but not used [-Wunused-but-set-variable] 343 | Int4 hsp_cnt, index2, hspset_cnt_old; | ^~~~~~~~~~~~~~ At top level: blast_seqalign.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 32 | static char const rcsid[] = "$Id: blast_seqalign.c,v 1.64 2010/02/12 20:54:54 maning Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_tabular.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/algo/blast/api/blast_tabular.h:42, from blast_tabular.c:35: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ blast_tabular.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 32 | static char const rcsid[] = "$Id: blast_tabular.c,v 1.41 2009/06/01 14:33:38 maning Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF repeats_filter.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from ../include/algo/blast/api/repeats_filter.h:41, from repeats_filter.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ repeats_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: repeats_filter.c,v 1.19 2007/12/19 21:56:48 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c seqsrc_multiseq.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 33 | static char const rcsid[] = "$Id: seqsrc_multiseq.c,v 1.28 2011/05/26 20:59:45 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/readdb.h:757, from ../include/algo/blast/api/seqsrc_readdb.h:38, from seqsrc_readdb.c:35: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ seqsrc_readdb.c: In function ‘s_ReaddbGetNextChunk’: seqsrc_readdb.c:375:11: warning: variable ‘real_readdb_entries’ set but not used [-Wunused-but-set-variable] 375 | Uint4 real_readdb_entries; | ^~~~~~~~~~~~~~~~~~~ At top level: seqsrc_readdb.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 32 | static char const rcsid[] = "$Id: seqsrc_readdb.c,v 1.60 2011/05/26 20:59:45 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF twoseq_api.c twoseq_api.c: In function ‘s_TwoSeqBasicFillOptions’: twoseq_api.c:100:10: warning: unused variable ‘status’ [-Wunused-variable] 100 | Int2 status = 0; | ^~~~~~ In file included from ../include/sqnutils.h:51, from ../include/algo/blast/api/twoseq_api.h:41, from twoseq_api.c:45: twoseq_api.c: At top level: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dust_filter.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from ../include/algo/blast/api/dust_filter.h:41, from dust_filter.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ dust_filter.c: In function ‘s_GetFilteringLocations’: dust_filter.c:171:32: warning: unused variable ‘filter_slp_rev’ [-Wunused-variable] 171 | BlastSeqLoc* filter_slp_rev = NULL; | ^~~~~~~~~~~~~~ At top level: dust_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 2 | static char const rcsid[] = "$Id: dust_filter.c,v 1.12 2007/12/19 22:05:56 camacho Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_message_api.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from blast_message_api.c:33: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/ncbithr.h:87, from hspfilter_queue.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ hspfilter_queue.c: In function ‘s_BlastHSPQueueInit’: hspfilter_queue.c:65:24: warning: unused variable ‘q_data’ [-Wunused-variable] 65 | BlastHSPQueueData * q_data = data; | ^~~~~~ hspfilter_queue.c: In function ‘s_BlastHSPQueueNew’: hspfilter_queue.c:157:24: warning: assignment to ‘BlastHSPWriterInitFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ [-Wincompatible-pointer-types] 157 | writer->InitFnPtr = &s_BlastHSPQueueInit; | ^ hspfilter_queue.c:158:24: warning: assignment to ‘BlastHSPWriterFinalFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ [-Wincompatible-pointer-types] 158 | writer->FinalFnPtr = &s_BlastHSPQueueFinal; | ^ hspfilter_queue.c: In function ‘BlastHSPQueueInfoNew’: hspfilter_queue.c:189:26: warning: assignment to ‘BlastHSPWriterNewFn’ {aka ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *, BLAST_SequenceBlk *)’} from incompatible pointer type ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *)’ [-Wincompatible-pointer-types] 189 | writer_info->NewFnPtr = &s_BlastHSPQueueNew; | ^ At top level: hspfilter_queue.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 36 | static char const rcsid[] = | ^~~~~ rm -f libblastapi.a ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libblastapi.a ../lib ranlib ../lib/libblastapi.a arm-linux-gnueabihf-gcc -o asntool -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -DWIN_MOTIF -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asntool.c:64: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asncode.c:52: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asncode.c: In function ‘AsnCodeGenEnumDefines’: asncode.c:736:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=] 736 | sprintf (iter->buf, "%s %d\n", AsnCodeCleanName (avtp->name, lclbuf, | ~^ | | | int | %lld 737 | CLEAN_FOR_SLOT, iter -> acip -> maxDefineLength), avtp->intvalue); | ~~~~~~~~~~~~~~ | | | Nlm_Int8 {aka long long int} asncode.c: In function ‘AsnCode_SETOF_base_or_user’: asncode.c:1518:20: warning: variable ‘real_type’ set but not used [-Wunused-but-set-variable] 1518 | Int2 real_type; | ^~~~~~~~~ asncode.c:1517:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable] 1517 | CharPtr valslot; | ^~~~~~~ asncode.c: In function ‘userobj_and_basetype_SETOF’: asncode.c:2472:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable] 2472 | CharPtr valslot; | ^~~~~~~ asncode.c: In function ‘AsnCodeIsReallyChoice’: asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 3201 | if (now_atp) | ^ asncode.c: In function ‘AsnCodeFunctionWriteFuncChoiceStart’: asncode.c:3623:20: warning: variable ‘obj_use’ set but not used [-Wunused-but-set-variable] 3623 | CharPtr obj_use = which_node->obj_name; | ^~~~~~~ asncode.c: In function ‘AsnCodeIter’: asncode.c:4238:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 4238 | if (iter->atp != NULL) | ^ asncode.c: In function ‘AsnCode’: asncode.c:4317:48: warning: variable ‘objnamety’ set but not used [-Wunused-but-set-variable] 4317 | CharPtr objnameuc = NULL, objnamemc = NULL, objnamety = NULL; | ^~~~~~~~~ At top level: asncode.c:291:17: warning: ‘defbyte’ defined but not used [-Wunused-variable] 291 | static CharPtr defbyte = "ASNCODE_BYTEVAL_SLOT"; | ^~~~~~~ asncode.c:290:17: warning: ‘defbool’ defined but not used [-Wunused-variable] 290 | static CharPtr defbool = "ASNCODE_BOOLVAL_SLOT"; | ^~~~~~~ asncode.c:289:17: warning: ‘defreal’ defined but not used [-Wunused-variable] 289 | static CharPtr defreal = "ASNCODE_REALVAL_SLOT"; | ^~~~~~~ asncode.c:288:17: warning: ‘defbigint’ defined but not used [-Wunused-variable] 288 | static CharPtr defbigint = "ASNCODE_BIGINTVAL_SLOT"; | ^~~~~~~~~ asncode.c:286:17: warning: ‘defptr’ defined but not used [-Wunused-variable] 286 | static CharPtr defptr = "ASNCODE_PTRVAL_SLOT"; | ^~~~~~ /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ../lib/libncbi.a(ncbifile.o): in function `Nlm_TmpNam': ./build/ncbifile.c:1211: warning: the use of `tempnam' is dangerous, better use `mkstemp' cp -p asntool ../bin make[2]: Leaving directory '/<>/build' /usr/bin/make -C build -f makedemo.unx LCL=lnx CC="arm-linux-gnueabihf-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2" VIBLIBS= VIBFLAG= LIB50=-lpcre make[2]: Entering directory '/<>/build' ./ln-if-absent ../demo/*.* . ./ln-if-absent ../regexp/test/*.* . ./ln-if-absent ../regexp/demo/*.* . ./ln-if-absent ../internal/*.* . set: No match. make[2]: [makedemo.unx:160: copy] Error 1 (ignored) chmod -R ug+rw,o+r . echo Waiting...go Waiting...go arm-linux-gnueabihf-gcc -o testcore -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib testcore.c -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from testcore.c:42: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ testcore.c:337:13: warning: ‘TestStrings’ defined but not used [-Wunused-function] 337 | static void TestStrings (void) | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -o makeset -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib makeset.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/all.h:9, from makeset.c:9: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from makeset.c:9: ../include/all.h:7293: warning: "RNA_QUAL" redefined 7293 | #define RNA_QUAL &at[2254] | ../include/all.h:5823: note: this is the location of the previous definition 5823 | #define RNA_QUAL &at[1025] | makeset.c: In function ‘Nlm_Main’: makeset.c:27:26: warning: unused variable ‘uid’ [-Wunused-variable] 27 | Int4 seekptr, tempseek, uid; | ^~~ makeset.c:27:16: warning: unused variable ‘tempseek’ [-Wunused-variable] 27 | Int4 seekptr, tempseek, uid; | ^~~~~~~~ makeset.c:27:7: warning: unused variable ‘seekptr’ [-Wunused-variable] 27 | Int4 seekptr, tempseek, uid; | ^~~~~~~ arm-linux-gnueabihf-gcc -o getmesh -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib getmesh.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/allpub.h:9, from getmesh.c:8: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o indexpub -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib indexpub.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/allpub.h:9, from indexpub.c:7: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o getpub -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib getpub.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/allpub.h:9, from getpub.c:7: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o testobj -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib testobj.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmedli.h:80, from testobj.c:8: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o seqtest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib seqtest.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from seqtest.c:8: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o dosimple -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib dosimple.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/simple.h:63, from dosimple.c:7: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o asn2ff -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib asn2ff.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from asn2ff.c:7: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2ff.c: In function ‘Nlm_Main’: asn2ff.c:129:10: warning: unused variable ‘good’ [-Wunused-variable] 129 | Boolean good = FALSE; | ^~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff.c:9: At top level: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ asn2ff.c: In function ‘Nlm_Main’: asn2ff.c:404:7: warning: ‘atp2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 404 | if (atp == atp2) { /* top level Seq-entry */ | ^ asn2ff.c:351:7: warning: ‘atp1’ may be used uninitialized in this function [-Wmaybe-uninitialized] 351 | if (atp == atp1) { | ^ arm-linux-gnueabihf-gcc -o checksub -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib checksub.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from checksub.c:8: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o asndhuff -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib asndhuff.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/casn.h:96, from asndhuff.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asndhuff.c: In function ‘do_medline’: asndhuff.c:182:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 182 | for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count) | ^~~~~ asndhuff.c: In function ‘do_sequence’: asndhuff.c:221:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 221 | for (count=0; entry=CASN_NextSeqEntry(casnh); ++count) | ^~~~~ asndhuff.c:200:10: warning: unused variable ‘val’ [-Wunused-variable] 200 | DataVal val; | ^~~ arm-linux-gnueabihf-gcc -o entrcmd -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from entrcmd.c:113: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ entrcmd.c: In function ‘PrintDSPMwww’: entrcmd.c:373:21: warning: unused variable ‘lsp’ [-Wunused-variable] 373 | LocalLinkSetPtr lsp; | ^~~ entrcmd.c: In function ‘PrintDSPNwww’: entrcmd.c:465:21: warning: unused variable ‘lsp’ [-Wunused-variable] 465 | LocalLinkSetPtr lsp; | ^~~ entrcmd.c: In function ‘PrintDSPPwww’: entrcmd.c:569:21: warning: unused variable ‘lsp’ [-Wunused-variable] 569 | LocalLinkSetPtr lsp; | ^~~ entrcmd.c: In function ‘TermProcessing’: entrcmd.c:1297:13: warning: variable ‘inclusive’ set but not used [-Wunused-but-set-variable] 1297 | Boolean inclusive; | ^~~~~~~~~ entrcmd.c:1296:13: warning: variable ‘endWithTerm’ set but not used [-Wunused-but-set-variable] 1296 | Boolean endWithTerm = FALSE; | ^~~~~~~~~~~ entrcmd.c:1295:13: warning: variable ‘beginWithTerm’ set but not used [-Wunused-but-set-variable] 1295 | Boolean beginWithTerm = FALSE; | ^~~~~~~~~~~~~ At top level: entrcmd.c:284:16: warning: ‘IsGenBank’ defined but not used [-Wunused-function] 284 | static Boolean IsGenBank (SeqEntryPtr sep) | ^~~~~~~~~ entrcmd.c: In function ‘RunProgram’: entrcmd.c:1096:19: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1096 | if (! ProcessOutput(lsp, db, outputSpec, processingCount, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1097 | lsp != NULL ? lsp->num : processingCount, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1098 | parseOnly)) | ~~~~~~~~~~ entrcmd.c: In function ‘Nlm_Main’: entrcmd.c:2235:9: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2235 | RunProgram(programStr, lsp, db, FALSE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ entrcmd.c:2191:31: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2191 | temp = lsp->uids[k]; | ~~~^~~~~~ entrcmd.c:1548:17: warning: ‘db’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1548 | slp->db = db; | ~~~~~~~~^~~~ entrcmd.c:1476:13: note: ‘db’ was declared here 1476 | DocType db; | ^~ entrcmd.c:1620:15: warning: ‘vector’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1620 | lsp->uids = vector; | ~~~~~~~~~~^~~~~~~~ entrcmd.c:1582:13: note: ‘vector’ was declared here 1582 | Int4Ptr vector; | ^~~~~~ In file included from ../include/ncbi.h:65, from entrcmd.c:113: ../include/ncbifile.h:121:20: warning: ‘neighborFile’ may be used uninitialized in this function [-Wmaybe-uninitialized] 121 | #define FileLength Nlm_FileLength | ^~~~~~~~~~~~~~ entrcmd.c:1919:13: note: ‘neighborFile’ was declared here 1919 | CharPtr neighborFile; | ^~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from entrcmd.c:113: ../include/ncbistr.h:312:18: warning: ‘taxString’ may be used uninitialized in this function [-Wmaybe-uninitialized] 312 | #define StrICmp Nlm_StrICmp | ^~~~~~~~~~~ entrcmd.c:1917:13: note: ‘taxString’ was declared here 1917 | CharPtr taxString; | ^~~~~~~~~ entrcmd.c:2231:9: warning: ‘termString’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2231 | TermProcessing(programStr, termString, db, FALSE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ entrcmd.c:2137:20: warning: ‘boolString’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2137 | if ((bsp = EntrezTLEvalXString(boolString, db, -1, NULL, NULL)) != NULL) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o errhdr -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib errhdr.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from errhdr.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from errhdr.c:1: In function ‘strncat’, inlined from ‘main’ at errhdr.c:44:4: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 32 equals destination size [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 32 equals destination size [-Wstringop-overflow=] arm-linux-gnueabihf-gcc -o cdscan -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib cdscan.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cdscan.c:83: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cdscan.c:576:13: warning: ‘SeqEntryToFeat’ defined but not used [-Wunused-function] 576 | static void SeqEntryToFeat (SeqEntryPtr sep, FILE *fp) | ^~~~~~~~~~~~~~ cdscan.c:392:13: warning: ‘GenBankPubs’ defined but not used [-Wunused-function] 392 | static void GenBankPubs (SeqEntryPtr sep, FILE * fp) | ^~~~~~~~~~~ cdscan.c:133:13: warning: ‘root’ defined but not used [-Wunused-variable] 133 | static Char root [PATH_MAX]; | ^~~~ arm-linux-gnueabihf-gcc -o findspl -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi \ -lconnssl -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from findspl.c:62: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o ncbisort -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib sortcmd.c -lncbitool -lblastcompadj \ -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbisort.h:62, from sortcmd.c:64: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o fa2htgs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib fa2htgs.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from fa2htgs.c:30: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ fa2htgs.c: In function ‘Nlm_Main’: fa2htgs.c:475:10: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 475 | litp = (SeqLitPtr) dsp->data.ptrvalue; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fa2htgs.c:448:16: note: ‘dsp’ was declared here 448 | DeltaSeqPtr dsp; | ^~~ arm-linux-gnueabihf-gcc -o testval -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib testval.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from testval.c:9: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ testval.c: In function ‘Nlm_Main’: testval.c:186:7: warning: ‘atp2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 186 | if (atp == atp2) /* top level Seq-entry */ | ^ testval.c:183:17: warning: ‘atp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 183 | while ((atp = AsnReadId(aip, amp, atp)) != NULL) | ^~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o vecscreen -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib vecscreen.c -lncbitool \ -lblastcompadj -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from vecscreen.c:57: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/sqnutils.h:51, from vecscreen.c:68: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o gil2bin -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib gil2bin.c -lncbitool -lblastcompadj \ -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from gil2bin.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gil2bin.c: In function ‘Nlm_Main’: gil2bin.c:90:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 90 | else | ^~~~ gil2bin.c:93:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 93 | return 0; | ^~~~~~ arm-linux-gnueabihf-gcc -o asn2xml -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib asn2xml.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from asn2xml.c:21: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o debruijn -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib debruijn.c -lblast -lblastcompadj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from debruijn.c:38: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ debruijn.c: In function ‘Nlm_Main’: debruijn.c:72:12: warning: pointer targets in assignment from ‘Nlm_CharPtr’ {aka ‘char *’} to ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} differ in signedness [-Wpointer-sign] 72 | alphabet = myargs[1].strvalue; | ^ debruijn.c:80:14: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign] 80 | k = strlen(alphabet); | ^~~~~~~~ | | | Nlm_Uint1 * {aka unsigned char *} In file included from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from debruijn.c:38: /usr/arm-linux-gnueabihf/include/string.h:385:35: note: expected ‘const char *’ but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} 385 | extern size_t strlen (const char *__s) | ~~~~~~~~~~~~^~~ debruijn.c:89:10: warning: pointer targets in assignment from ‘char *’ to ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} differ in signedness [-Wpointer-sign] 89 | output = (char *) malloc(outputsize + 1); | ^ debruijn.c:106:8: warning: pointer targets in passing argument 1 of ‘puts’ differ in signedness [-Wpointer-sign] 106 | puts(output); | ^~~~~~ | | | Nlm_Uint1 * {aka unsigned char *} In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from debruijn.c:38: /usr/arm-linux-gnueabihf/include/stdio.h:632:30: note: expected ‘const char *’ but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} 632 | extern int puts (const char *__s); | ~~~~~~~~~~~~^~~ debruijn.c:109:1: warning: control reaches end of non-void function [-Wreturn-type] 109 | } | ^ At top level: debruijn.c:29:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 29 | static char const rcsid[] = "$Id: debruijn.c,v 1.4 2004/02/09 21:24:59 ucko Exp $"; | ^~~~~ arm-linux-gnueabihf-gcc -o asn2idx -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib asn2idx.c -lncbitool -lblastcompadj -lncbiobj \ -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2idx.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o sortbyquote -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib sortbyquote.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from sortbyquote.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o subfuse -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib subfuse.c -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from subfuse.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o test_regexp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib pcretest.c -lpcre arm-linux-gnueabihf-gcc -o demo_regexp -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib pcredemo.c -lpcre arm-linux-gnueabihf-gcc -o demo_regexp_grep -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib pcregrep.c -lpcre pcregrep.c: In function ‘main’: pcregrep.c:515:64: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 515 | if (pattern_count == 1) s[0] = 0; else sprintf(s, " number %d", j); | ^~ pcregrep.c:515:55: note: directive argument in the range [0, 2147483647] 515 | if (pattern_count == 1) s[0] = 0; else sprintf(s, " number %d", j); | ^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from pcregrep.c:9: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 10 and 19 bytes into a destination of size 16 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/build' /usr/bin/make -C build -f makenet.unx LCL=lnx CC="arm-linux-gnueabihf-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2" THREAD_OBJ="ncbithr.o" \ THREAD_OTHERLIBS="-lpthread" \ NETENTREZVERSION="2.02c2ASN1SPEC6" BLIB31=libvibnet.a \ OGLLIBS= VIBLIBS= VIB="Psequin sbtedit udv ddv taxblast idfetch asn2gb tbl2asn gene2xml entrez2 gbseqget asn2all asn2asn asn2fsa asn2xml asndisc asnmacro asnval cleanasn insdseqget nps2gps spidey trna2sap trna2tbl Cn3D" make[2]: Entering directory '/<>/build' ./ln-if-absent ../connect/test/*.c . ./ln-if-absent ../network/entrez/client/*.h ../include ./ln-if-absent ../network/entrez/client/*.c . ./ln-if-absent ../network/medarch/client/*.h ../include ./ln-if-absent ../network/medarch/client/*.c . ./ln-if-absent ../network/taxonomy/client/*.h ../include set: No match. make[2]: [makenet.unx:480: copy] Error 1 (ignored) ./ln-if-absent ../network/taxonomy/client/*.c . set: No match. make[2]: [makenet.unx:481: copy] Error 1 (ignored) ./ln-if-absent ../network/taxon1/common/*.h ../include ./ln-if-absent ../network/taxon1/common/*.c . ./ln-if-absent ../network/taxon1/taxon2/*.h ../include ./ln-if-absent ../network/taxon1/taxon2/*.c . ./ln-if-absent ../network/id0arch/client/*.h ../include set: No match. make[2]: [makenet.unx:486: copy] Error 1 (ignored) ./ln-if-absent ../network/id0arch/client/*.c . set: No match. make[2]: [makenet.unx:487: copy] Error 1 (ignored) ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id1arch/*.c . ./ln-if-absent ../network/id2arch/*.h ../include ./ln-if-absent ../network/id2arch/*.c . ./ln-if-absent ../network/spell/client/*.h ../include ./ln-if-absent ../network/spell/client/*.c . ./ln-if-absent ../network/suggest/client/*.h ../include ./ln-if-absent ../network/suggest/client/*.c . ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/blast3/client/*.c . ./ln-if-absent ../tools/taxblast.h ../include ./ln-if-absent ../tools/taxblast.c . ./ln-if-absent /*.c . set: No match. make[2]: [makenet.unx:500: copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.c . set: No match. make[2]: [makenet.unx:501: copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.h ../include set: No match. make[2]: [makenet.unx:502: copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.c . set: No match. make[2]: [makenet.unx:503: copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. make[2]: [makenet.unx:504: copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. make[2]: [makenet.unx:505: copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. make[2]: [makenet.unx:506: copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. make[2]: [makenet.unx:507: copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. make[2]: [makenet.unx:508: copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. make[2]: [makenet.unx:509: copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. make[2]: [makenet.unx:510: copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. make[2]: [makenet.unx:511: copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. make[2]: [makenet.unx:512: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. make[2]: [makenet.unx:513: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. make[2]: [makenet.unx:514: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. make[2]: [makenet.unx:515: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. make[2]: [makenet.unx:516: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. make[2]: [makenet.unx:517: copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. make[2]: [makenet.unx:518: copy] Error 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/cspeedtest.c . ./ln-if-absent ../demo/sqn2agp.c . ./ln-if-absent ../demo/sugint.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnbarval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asnmacro.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/raw2delt.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/xlint.c . ./ln-if-absent ../demo/diffshift.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/src_chk.c . ./ln-if-absent ../demo/tbl_chk.c . ./ln-if-absent ../demo/export_cmt.c . ./ln-if-absent ../internal/parser/flat2asn.c . make[2]: [makenet.unx:577: copy] Error 1 (ignored) ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. make[2]: [makenet.unx:579: copy] Error 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . echo Waiting...go Waiting...go arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from ni_lib_.c:76: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ni_debug.c:55: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ni_service.c:125: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ni_service.c: In function ‘s_GenericGetService’: ni_service.c:201:19: warning: unused variable ‘c’ [-Wunused-variable] 201 | CONNECTOR c; | ^ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from ../include/ni_error.h:76, from ni_error.c:72: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from netentr.c:161: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netentr.c: In function ‘s_NetEntTLEvalCount’: netentr.c:798:5: warning: "/*" within comment [-Wcomment] 798 | /*MsgSetReadTimeout(Entrez_ni, 60);*/ | netentr.c: In function ‘s_NetDocSumListGet’: netentr.c:856:18: warning: variable ‘amp’ set but not used [-Wunused-but-set-variable] 856 | AsnModulePtr amp; | ^~~ netentr.c: In function ‘s_NetTermListByTerm’: netentr.c:1212:9: warning: variable ‘terms_to_read’ set but not used [-Wunused-but-set-variable] 1212 | int terms_to_read; | ^~~~~~~~~~~~~ netentr.c:1200:14: warning: unused variable ‘asnout’ [-Wunused-variable] 1200 | AsnIoPtr asnout = Entrez_asnout; | ^~~~~~ netentr.c: In function ‘s_NetTermListByPage’: netentr.c:1343:14: warning: unused variable ‘asnout’ [-Wunused-variable] 1343 | AsnIoPtr asnout = Entrez_asnout; | ^~~~~~ netentr.c: In function ‘NetEntTLEval’: netentr.c:675:12: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 675 | return lsp; | ^~~ netentr.c: In function ‘NetEntTLEvalCount’: netentr.c:800:8: warning: ‘atp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 800 | if (atp == ENTREZ_BACK_eval_count) | ^ netentr.c:782:16: note: ‘atp’ was declared here 782 | AsnTypePtr atp; | ^~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from netlib.c:82: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netlib.c: In function ‘BoolExprAsnWrite’: netlib.c:307:16: warning: unused variable ‘n’ [-Wunused-variable] 307 | static int n = 0; | ^ At top level: netlib.c:307:16: warning: ‘n’ defined but not used [-Wunused-variable] netlib.c:96:16: warning: ‘loaded’ defined but not used [-Wunused-variable] 96 | static Boolean loaded = FALSE; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnneten.h:9, from objneten.c:86: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objneten.c: In function ‘NetEntAsnLoad’: objneten.c:106:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 106 | if (loaded) | ^~ objneten.c:108:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 108 | loaded = TRUE; | ^~~~~~ objneten.c: In function ‘EntrezNeighborTextAsnRead’: objneten.c:2938:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2938 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘ChildLinkAsnRead’: objneten.c:3148:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3148 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘EntrezHierarchyAsnRead’: objneten.c:3442:15: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3442 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘EntrezBlastreqAsnRead’: objneten.c:3705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3705 | AsnReadFunc func; | ^~~~ objneten.c:3704:12: warning: unused variable ‘isError’ [-Wunused-variable] 3704 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘EntrezExtraInfoAsnRead’: objneten.c:3911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3911 | AsnReadFunc func; | ^~~~ objneten.c:3910:12: warning: unused variable ‘isError’ [-Wunused-variable] 3910 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘ClusterArticlesAsnRead’: objneten.c:4262:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4262 | AsnReadFunc func; | ^~~~ objneten.c:4261:12: warning: unused variable ‘isError’ [-Wunused-variable] 4261 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘ClusterRespAsnRead’: objneten.c:4455:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4455 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘DateConstraintsAsnRead’: objneten.c:4622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4622 | AsnReadFunc func; | ^~~~ objneten.c: In function ‘DateVectorAsnRead’: objneten.c:4785:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4785 | AsnReadFunc func; | ^~~~ objneten.c:4784:12: warning: unused variable ‘isError’ [-Wunused-variable] 4784 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘GetByFidAsnRead’: objneten.c:4963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4963 | AsnReadFunc func; | ^~~~ objneten.c:4962:12: warning: unused variable ‘isError’ [-Wunused-variable] 4962 | Boolean isError = FALSE; | ^~~~~~~ objneten.c: In function ‘GetFeatIdsAsnRead’: objneten.c:5133:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 5133 | AsnReadFunc func; | ^~~~ objneten.c:5132:12: warning: unused variable ‘isError’ [-Wunused-variable] 5132 | Boolean isError = FALSE; | ^~~~~~~ rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from Naccentr.c:297: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ Naccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces] 357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = { | ^ 358 | 8, 6, 3, 3, | { } 359 | 8, 6, 3, 3, | { } 360 | 8, 6, 3, 3, | { } 361 | 8, 6, 3, 3, | { } 362 | 9, 7, 4, 3, | { } 363 | 9, 8, 5, 3, | { } 364 | 10, 9, 5, 3, | { } 365 | 10, 10, 5, 3, | { } 366 | 11, 10, 5, 3, | { } 367 | 11, 11, 5, 3, | { } 368 | 12, 11, 5, 3, | { } 369 | 12, 11, 5, 3, | { } 370 | 12, 11, 5, 3 | { 371 | }; | } Naccentr.c: In function ‘EntrezDocSumListGet’: Naccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable] 1409 | Int2 actual; | ^~~~~~ Naccentr.c: In function ‘EntrezGIForSeqIdFunc’: Naccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3283 | if (! gi) return OM_MSG_RET_OK; | ^~ Naccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3285 | sip2 = ValNodeNew(NULL); | ^~~~ rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from Caccentr.c:297: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ Caccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces] 357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = { | ^ 358 | 8, 6, 3, 3, | { } 359 | 8, 6, 3, 3, | { } 360 | 8, 6, 3, 3, | { } 361 | 8, 6, 3, 3, | { } 362 | 9, 7, 4, 3, | { } 363 | 9, 8, 5, 3, | { } 364 | 10, 9, 5, 3, | { } 365 | 10, 10, 5, 3, | { } 366 | 11, 10, 5, 3, | { } 367 | 11, 11, 5, 3, | { } 368 | 12, 11, 5, 3, | { } 369 | 12, 11, 5, 3, | { } 370 | 12, 11, 5, 3 | { 371 | }; | } Caccentr.c: In function ‘EntrezDocSumListGet’: Caccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable] 1409 | Int2 actual; | ^~~~~~ Caccentr.c: In function ‘EntrezGIForSeqIdFunc’: Caccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 3283 | if (! gi) return OM_MSG_RET_OK; | ^~ Caccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 3285 | sip2 = ValNodeNew(NULL); | ^~~~ rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from netcnfg.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netcnfg.c: In function ‘ShowNetConfigForm’: netcnfg.c:319:23: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable] 319 | PrompT ppt0, ppt1; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from trmlst.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ trmlst.c: In function ‘FetchFromTermList’: trmlst.c:1048:16: warning: variable ‘numRead’ set but not used [-Wunused-but-set-variable] 1048 | Int2 numRead; | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from docsum.c:252: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ docsum.c: In function ‘ImportDocSumForm’: docsum.c:2298:21: warning: unused variable ‘sephead’ [-Wunused-variable] 2298 | SeqEntryPtr sephead = NULL; | ^~~~~~~ docsum.c:2296:21: warning: unused variable ‘is_na’ [-Wunused-variable] 2296 | Boolean is_na = TRUE; | ^~~~~ docsum.c:2290:21: warning: unused variable ‘choice’ [-Wunused-variable] 2290 | Uint1 choice = 0; | ^~~~~~ docsum.c: In function ‘SaveDocsumProject’: docsum.c:3042:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable] 3042 | SummFormPtr sfp; | ^~~ docsum.c: In function ‘LaunchStructureViewer’: docsum.c:4192:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4192 | system (cmmd); | ^~~~~~~~~~~~~ At top level: docsum.c:439:15: warning: ‘checkmark’ defined but not used [-Wunused-variable] 439 | static Uint1 checkmark [] = { | ^~~~~~~~~ docsum.c: In function ‘SetDefaultFailureMessage’: docsum.c:687:48: warning: ‘ in ’ directive writing 4 bytes into a region of size between 3 and 42 [-Wformat-overflow=] 687 | sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname); | ^~~~ docsum.c:687:21: note: assuming directive output of 3 bytes 687 | sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from docsum.c:252: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 78) into a destination of size 64 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ docsum.c: In function ‘FetchLocalBioseq’: docsum.c:1223:6: warning: ‘str’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1223 | if (str == NULL) return failed; | ^ docsum.c: In function ‘LaunchStructureViewer.constprop’: docsum.c:4191:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=] 4191 | sprintf (cmmd, "Cn3D %s &", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from docsum.c:252: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libvibnet.a ar cru libvibnet.a netcnfg.o trmlst.o docsum.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibnet.a ../lib ranlib ../lib/libvibnet.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtax1.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objtax1.c: In function ‘Taxon1ReqFree’: objtax1.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 49 | Pointer pnt; | ^~~ objtax1.c: In function ‘Taxon1ReqAsnRead’: objtax1.c:92:12: warning: unused variable ‘isError’ [-Wunused-variable] 92 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon1InfoAsnRead’: objtax1.c:502:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 502 | AsnReadFunc func; | ^~~~ objtax1.c:501:12: warning: unused variable ‘isError’ [-Wunused-variable] 501 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon1ErrorAsnRead’: objtax1.c:1131:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1131 | AsnReadFunc func; | ^~~~ objtax1.c:1130:12: warning: unused variable ‘isError’ [-Wunused-variable] 1130 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon1NameAsnRead’: objtax1.c:1296:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1296 | AsnReadFunc func; | ^~~~ objtax1.c:1295:12: warning: unused variable ‘isError’ [-Wunused-variable] 1295 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon1DataAsnRead’: objtax1.c:1482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1482 | AsnReadFunc func; | ^~~~ objtax1.c:1481:12: warning: unused variable ‘isError’ [-Wunused-variable] 1481 | Boolean isError = FALSE; | ^~~~~~~ objtax1.c: In function ‘Taxon2DataAsnRead’: objtax1.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1670 | AsnReadFunc func; | ^~~~ objtax1.c: In function ‘Taxon1ReqAsnRead’: objtax1.c:284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 284 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objtax1.c: In function ‘Taxon1RespAsnRead’: objtax1.c:920:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 920 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/utilpub.h:4, from taxutil.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ taxutil.c: In function ‘taxname_match’: taxutil.c:66:24: warning: unused variable ‘taxstr’ [-Wunused-variable] 66 | CharPtr taxstr = NULL; | ^~~~~~ taxutil.c: In function ‘get_lineage’: taxutil.c:140:28: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 140 | return Nlm_StringSave(onp->lineage); | ~~~^~~~~~~~~ taxutil.c: In function ‘get_gcode’: taxutil.c:160:23: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 160 | gclp->genomic = onp->gcode; | ~~~^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c tc2proc.c: In function ‘getIdByOrgRef’: tc2proc.c:407:17: warning: unused variable ‘om_flag’ [-Wunused-variable] 407 | Boolean om_flag= FALSE; | ^~~~~~~ tc2proc.c: In function ‘bldLineage’: tc2proc.c:1095:10: warning: unused variable ‘rank’ [-Wunused-variable] 1095 | Int2 rank= 0; | ^~~~ tc2proc.c: In function ‘storedTaxId’: tc2proc.c:2114:17: warning: unused variable ‘object_id’ [-Wunused-variable] 2114 | ObjectIdPtr object_id; | ^~~~~~~~~ tc2proc.c: In function ‘tax1e_needUpdate’: tc2proc.c:2181:13: warning: unused variable ‘hit_name’ [-Wunused-variable] 2181 | CharPtr hit_name; | ^~~~~~~~ tc2proc.c:2180:13: warning: unused variable ‘need_search_name’ [-Wunused-variable] 2180 | Boolean need_search_name= TRUE; | ^~~~~~~~~~~~~~~~ tc2proc.c:2179:9: warning: unused variable ‘is_species’ [-Wunused-variable] 2179 | int is_species; | ^~~~~~~~~~ tc2proc.c:2176:19: warning: unused variable ‘res’ [-Wunused-variable] 2176 | Taxon1DataPtr res; | ^~~ At top level: tc2proc.c:403:13: warning: ‘getIdByOrgRef’ defined but not used [-Wunused-function] 403 | static Int4 getIdByOrgRef(CharPtr sname, OrgNamePtr orNm) | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from txcdproc.c:116: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/txclient.h:73, from parttree.c:79: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ parttree.c: In function ‘tax_ptree_addSubtree’: parttree.c:392:13: warning: unused variable ‘need_remove’ [-Wunused-variable] 392 | Boolean need_remove= FALSE; | ^~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from taxblast.c:161: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ taxblast.c: In function ‘TXBHtmlReportInternal’: taxblast.c:1359:37: warning: variable ‘linlines’ set but not used [-Wunused-but-set-variable] 1359 | Int2 numtaxa, numorgs, numhits, linlines, longname; | ^~~~~~~~ taxblast.c: In function ‘RDTaxLookupReset’: taxblast.c:2050:1: warning: control reaches end of non-void function [-Wreturn-type] 2050 | } | ^ At top level: taxblast.c:1967:13: warning: ‘getTotalTaxIdCount’ defined but not used [-Wunused-function] 1967 | static Int4 getTotalTaxIdCount(TreeCursorPtr cursor) | ^~~~~~~~~~~~~~~~~~ taxblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: taxblast.c,v 6.31 2015/07/06 19:25:47 madden Exp $"; | ^~~~~ taxblast.c: In function ‘TXBGetTargetGi’: taxblast.c:504:12: warning: ‘gi’ may be used uninitialized in this function [-Wmaybe-uninitialized] 504 | return gi; | ^~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from taxblast.c:161: In function ‘strncpy’, inlined from ‘TXBHtmlReportInternal’ at taxblast.c:1491:17, inlined from ‘TXBHtmlReport’ at taxblast.c:1803:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 128 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libncbitxc2.a ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbitxc2.a ../lib ranlib ../lib/libncbitxc2.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from id1gen.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ id1gen.c: In function ‘ID1serverRequestFree’: id1gen.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 49 | Pointer pnt; | ^~~ id1gen.c: In function ‘ID1serverRequestAsnRead’: id1gen.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable] 90 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1serverMaxcomplexAsnRead’: id1gen.c:348:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 348 | AsnReadFunc func; | ^~~~ id1gen.c:347:12: warning: unused variable ‘isError’ [-Wunused-variable] 347 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1SeqHistAsnRead’: id1gen.c:530:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 530 | AsnReadFunc func; | ^~~~ id1gen.c:529:12: warning: unused variable ‘isError’ [-Wunused-variable] 529 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1SeqEntryInfoAsnRead’: id1gen.c:979:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 979 | AsnReadFunc func; | ^~~~ id1gen.c:978:12: warning: unused variable ‘isError’ [-Wunused-variable] 978 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1blobInfoAsnRead’: id1gen.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1147 | AsnReadFunc func; | ^~~~ id1gen.c:1146:12: warning: unused variable ‘isError’ [-Wunused-variable] 1146 | Boolean isError = FALSE; | ^~~~~~~ id1gen.c: In function ‘ID1serverDebugAsnRead’: id1gen.c:1368:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1368 | AsnReadFunc func; | ^~~~ id1gen.c: In function ‘ID1serverBackAsnRead’: id1gen.c:811:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 811 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ id1gen.c: In function ‘ID1serverRequestAsnRead’: id1gen.c:186:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 186 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from id1arch.c:31: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ id1arch.c: In function ‘ID1ArchSeqEntryGet’: id1arch.c:173:7: warning: unused variable ‘retval’ [-Wunused-variable] 173 | Int4 retval = 0; | ^~~~~~ id1arch.c: In function ‘ID1ArchGIGet’: id1arch.c:486:10: warning: unused variable ‘retval’ [-Wunused-variable] 486 | Int4 retval = 0; | ^~~~~~ id1arch.c: In function ‘SeqHistPrintTable’: id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=] 553 | sprintf(repl_date,"%0.2d/%0.2d/%0.4d", | ^~~~~~~~~~~~~~~~~~~ id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=] id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=] id1arch.c:563:47: warning: spurious trailing ‘%’ in format [-Wformat=] 563 | fprintf(fp,"%-20d%-20s%",old_gi,repl_date); | ^ id1arch.c:558:65: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=] 558 | sprintf(repl_date,"%-20s",shp->replace_date->str); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from id1arch.c:31: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes into a destination of size 20 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from accid1.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ accid1.c: In function ‘s_ID1BioseqFetchFunc’: accid1.c:262:9: warning: unused variable ‘retcode’ [-Wunused-variable] 262 | Int2 retcode=0; | ^~~~~~~ rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objblst3.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objblst3.c: In function ‘BlastSearchAsnRead’: objblst3.c:91:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 91 | AsnReadFunc func; | ^~~~ objblst3.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable] 90 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastRequestFree’: objblst3.c:287:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 287 | Pointer pnt; | ^~~ objblst3.c: In function ‘BlastRequestAsnRead’: objblst3.c:337:12: warning: unused variable ‘isError’ [-Wunused-variable] 337 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘Cutoff2_cutoff2Free’: objblst3.c:999:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 999 | Pointer pnt; | ^~~ objblst3.c: In function ‘BlastParametersAsnRead’: objblst3.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1027 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘Cutoff2_cutoff2AsnRead’: objblst3.c:1422:12: warning: unused variable ‘isError’ [-Wunused-variable] 1422 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘Cutoff_cutoffAsnRead’: objblst3.c:1788:12: warning: unused variable ‘isError’ [-Wunused-variable] 1788 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘Cutoff_cutoffFree’: objblst3.c:1871:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 1871 | Pointer pnt; | ^~~ objblst3.c: In function ‘BlastMatrixAsnRead’: objblst3.c:1936:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 1936 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastDbinfoAsnRead’: objblst3.c:2153:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2153 | AsnReadFunc func; | ^~~~ objblst3.c:2152:12: warning: unused variable ‘isError’ [-Wunused-variable] 2152 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastMaskAsnRead’: objblst3.c:2357:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2357 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastKABlkAsnRead’: objblst3.c:2517:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2517 | AsnReadFunc func; | ^~~~ objblst3.c:2516:12: warning: unused variable ‘isError’ [-Wunused-variable] 2516 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastErrorAsnRead’: objblst3.c:2697:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2697 | AsnReadFunc func; | ^~~~ objblst3.c:2696:12: warning: unused variable ‘isError’ [-Wunused-variable] 2696 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastPhialignAsnRead’: objblst3.c:2861:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 2861 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastDbinfoGetAsnRead’: objblst3.c:3022:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3022 | AsnReadFunc func; | ^~~~ objblst3.c:3021:12: warning: unused variable ‘isError’ [-Wunused-variable] 3021 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastSeqIdAsnRead’: objblst3.c:3187:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3187 | AsnReadFunc func; | ^~~~ objblst3.c:3186:12: warning: unused variable ‘isError’ [-Wunused-variable] 3186 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastSequenceAsnRead’: objblst3.c:3364:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3364 | AsnReadFunc func; | ^~~~ objblst3.c:3363:12: warning: unused variable ‘isError’ [-Wunused-variable] 3363 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastPartsAsnRead’: objblst3.c:3532:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3532 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastQueuedAsnRead’: objblst3.c:3694:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3694 | AsnReadFunc func; | ^~~~ objblst3.c:3693:12: warning: unused variable ‘isError’ [-Wunused-variable] 3693 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastProgressAsnRead’: objblst3.c:3846:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 3846 | AsnReadFunc func; | ^~~~ objblst3.c:3845:12: warning: unused variable ‘isError’ [-Wunused-variable] 3845 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastDeflineAsnRead’: objblst3.c:4000:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4000 | AsnReadFunc func; | ^~~~ objblst3.c:3999:12: warning: unused variable ‘isError’ [-Wunused-variable] 3999 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘BlastVersionAsnRead’: objblst3.c:4168:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4168 | AsnReadFunc func; | ^~~~ objblst3.c:4167:12: warning: unused variable ‘isError’ [-Wunused-variable] 4167 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘MegaBlastHitAsnRead’: objblst3.c:4335:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4335 | AsnReadFunc func; | ^~~~ objblst3.c:4334:12: warning: unused variable ‘isError’ [-Wunused-variable] 4334 | Boolean isError = FALSE; | ^~~~~~~ objblst3.c: In function ‘MegaBlastResultsAsnRead’: objblst3.c:4546:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 4546 | AsnReadFunc func; | ^~~~ objblst3.c: In function ‘BlastRequestAsnRead’: objblst3.c:430:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 430 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objblst3.c: In function ‘BlastResponseAsnRead’: objblst3.c:791:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 791 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objblst3.c: In function ‘BlastParametersAsnRead’: objblst3.c:1474:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1474 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objblst3.c:1421:10: note: ‘choice’ was declared here 1421 | Uint1 choice; | ^~~~~~ objblst3.c:1840:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1840 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objblst3.c:1787:10: note: ‘choice’ was declared here 1787 | Uint1 choice; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from netblap3.c:359: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ netblap3.c: In function ‘BlastNetBioseqFetchFunc’: netblap3.c:1835:16: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable] 1835 | OMUserDataPtr omdp; | ^~~~ netblap3.c: In function ‘MegaBlastSeqLocNetCore’: netblap3.c:2049:8: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 2049 | Uint2 entityID = 0; | ^~~~~~~~ In file included from ../include/netblap3.h:135, from netblap3.c:364: netblap3.c: At top level: ../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function] 180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function] 181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function] 182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function] 199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function] 200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ netblap3.c:452:1: warning: ‘BlastResetOldHook’ defined but not used [-Wunused-function] 452 | BlastResetOldHook(void) | ^~~~~~~~~~~~~~~~~ netblap3.c:445:1: warning: ‘BlastGetErrorStatus’ defined but not used [-Wunused-function] 445 | BlastGetErrorStatus(void) | ^~~~~~~~~~~~~~~~~~~ netblap3.c:438:1: warning: ‘BlastSetErrorStatus’ defined but not used [-Wunused-function] 438 | BlastSetErrorStatus(Boolean status) | ^~~~~~~~~~~~~~~~~~~ netblap3.c:430:1: warning: ‘BlastSetErrorHook’ defined but not used [-Wunused-function] 430 | BlastSetErrorHook(void) | ^~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from netblap3.c:364: ../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable] 229 | static AsnModulePtr amp = ampx; | ^~~ ../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable] 228 | static AsnTypePtr at = atx; | ^~ ../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable] 227 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "blstspc.h23"; | ^~~~~~~~~~~ netblap3.c: In function ‘BlastNetMatrixToBlastMatrix’: netblap3.c:1212:35: warning: ‘index2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1212 | if (index1 != blast_matrix->rows || index2 != blast_matrix->columns) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netblap3.c: In function ‘SubmitRequest’: netblap3.c:1763:18: warning: ‘bllist’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1763 | bllist->next = blresp; | ~~~~~~~~~~~~~^~~~~~~~ netblap3.c:1698:19: note: ‘bllist’ was declared here 1698 | BlastResponsePtr bllist, blresp, head; | ^~~~~~ netblap3.c: In function ‘TraditionalBlastReportEngine’: netblap3.c:2570:11: warning: ‘next_seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2570 | while (seqalign) { | ^ rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmla.c:1: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ objmla.c: In function ‘MlaRequestFree’: objmla.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable] 49 | Pointer pnt; | ^~~ objmla.c: In function ‘MlaRequestAsnRead’: objmla.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable] 96 | Boolean isError = FALSE; | ^~~~~~~ objmla.c: In function ‘TitleMsgAsnRead’: objmla.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 447 | AsnReadFunc func; | ^~~~ objmla.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable] 446 | Boolean isError = FALSE; | ^~~~~~~ objmla.c: In function ‘TitleMsgListAsnRead’: objmla.c:612:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable] 612 | AsnReadFunc func; | ^~~~ objmla.c: In function ‘MlaRequestAsnRead’: objmla.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 249 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ objmla.c: In function ‘MlaBackAsnRead’: objmla.c:902:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized] 902 | anp->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ni_types.h:84, from ../include/ncbinet.h:84, from medarch.c:122: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ medarch.c:758:8: warning: ‘s_MedArchPubSetEntryGetUid’ defined but not used [-Wunused-function] 758 | /*FCN*/s_MedArchPubSetEntryGetUid ( | ^~~~~~~~~~~~~~~~~~~~~~~~~~ medarch.c:710:8: warning: ‘s_MedArchPubSetEntryGetPmId’ defined but not used [-Wunused-function] 710 | /*FCN*/s_MedArchPubSetEntryGetPmId ( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ medarch.c: In function ‘MedArchPubSetCreate’: medarch.c:1693:9: warning: ‘pubSetEAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1693 | MedlineEntryAsnWrite (lastmep, aip, pubSetEAtp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ni_types.h:85, from ../include/ncbinet.h:84, from medarch.c:122: ../include/asn.h:495:27: warning: ‘pubSetAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 495 | #define AsnEndStruct(x,y) AsnCloseStruct(x, y, NULL) | ^~~~~~~~~~~~~~ medarch.c:1625:16: note: ‘pubSetAtp’ was declared here 1625 | AsnTypePtr pubSetAtp; | ^~~~~~~~~ medarch.c:1655:5: warning: ‘startAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1655 | AsnWrite (aip, startAtp, NULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/medutil.h:79, from medutil.c:58: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ medutil.c: In function ‘FixPubEquiv’: medutil.c:1134:16: warning: variable ‘got’ set but not used [-Wunused-but-set-variable] 1134 | Boolean got; | ^~~ rm -f libncbimla.a ar cru libncbimla.a objmla.o medarch.o medutil.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbimla.a ../lib ranlib ../lib/libncbimla.a arm-linux-gnueabihf-gcc -o Psequin -I. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c \ -lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb \ -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla \ -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lconnssl -lncbi \ -lm sequin1.c:46:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 46 | static char *date_of_compilation = __DATE__; | ^~~~~~~~ sequin1.c:47:36: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 47 | static char *time_of_compilation = __TIME__; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin1.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin1.c: In function ‘SQACT_GuessWhatIAm’: sequin1.c:4884:76: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 4884 | if ((Int4)(*cp) < 0 || (Int4)(*cp) >= 256 || ! isprint ((Int4)(*cp)) && ! isspace ((Int4)(*cp))) | ^ sequin1.c: In function ‘FinishAlignmentRead’: sequin1.c:5196:16: warning: variable ‘rsult’ set but not used [-Wunused-but-set-variable] 5196 | Boolean rsult; | ^~~~~ sequin1.c: In function ‘BioseqViewFormMenus’: sequin1.c:8357:18: warning: variable ‘mssgext’ set but not used [-Wunused-but-set-variable] 8357 | Int2 mssgext; | ^~~~~~~ sequin1.c: In function ‘DeleteSelectedFeatureOrDescriptor’: sequin1.c:8894:19: warning: variable ‘itemtype’ set but not used [-Wunused-but-set-variable] 8894 | Uint2 itemtype; | ^~~~~~~~ sequin1.c:8893:19: warning: variable ‘itemID’ set but not used [-Wunused-but-set-variable] 8893 | Uint4 itemID; | ^~~~~~ sequin1.c:8891:19: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 8891 | Uint2 entityID; | ^~~~~~~~ sequin1.c: In function ‘IsolationSourceOk’: sequin1.c:14815:11: warning: unused variable ‘specific_bad_fmt’ [-Wunused-variable] 14815 | CharPtr specific_bad_fmt = "isolation-source should have a value like seawater, soil, etc. '%s' is not a valid isolation-source."; | ^~~~~~~~~~~~~~~~ sequin1.c:14811:11: warning: unused variable ‘is_ambiguous’ [-Wunused-variable] 14811 | Boolean is_ambiguous = FALSE; | ^~~~~~~~~~~~ sequin1.c: In function ‘WizardTrackerFree’: sequin1.c:15809:20: warning: variable ‘sep_next’ set but not used [-Wunused-but-set-variable] 15809 | SeqEntryPtr sep, sep_next; | ^~~~~~~~ sequin1.c: In function ‘AddCodingRegionFromWizard’: sequin1.c:15881:33: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable] 15881 | SeqEntryPtr old, psep, nsep; | ^~~~ sequin1.c: In function ‘SetWizardTrackerBaseSrcQuals’: sequin1.c:16157:7: warning: enumeration value ‘eVirusClass_Unknown’ not handled in switch [-Wswitch] 16157 | switch (wiz->virus_class) { | ^~~~~~ sequin1.c:16204:7: warning: enumeration value ‘eCulturedKingdom_Unknown’ not handled in switch [-Wswitch] 16204 | switch (wiz->cultured_kingdom) { | ^~~~~~ sequin1.c:16140:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 16140 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c: In function ‘SetWizardTrackerExtraSrcQuals’: sequin1.c:16328:7: warning: enumeration value ‘eVirusClass_Unknown’ not handled in switch [-Wswitch] 16328 | switch (wiz->virus_class) { | ^~~~~~ sequin1.c:16354:7: warning: enumeration value ‘eCulturedKingdom_Unknown’ not handled in switch [-Wswitch] 16354 | switch (wiz->cultured_kingdom) { | ^~~~~~ sequin1.c:16321:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 16321 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c: In function ‘AddWizardFeatureCallback’: sequin1.c:16687:3: warning: enumeration value ‘eVirusFeat_None’ not handled in switch [-Wswitch] 16687 | switch (wiz->virus_feat) { | ^~~~~~ sequin1.c:16687:3: warning: enumeration value ‘eVirusFeat_CDS’ not handled in switch [-Wswitch] sequin1.c: In function ‘GetWGSNote’: sequin1.c:17010:11: warning: unused variable ‘fmt’ [-Wunused-variable] 17010 | CharPtr fmt = "[%s][WGS wizard]"; | ^~~ sequin1.c: In function ‘FinishWizardAndLaunchSequin’: sequin1.c:17052:5: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 17052 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c: In function ‘HaveUniqueCombinationOfQuals’: sequin1.c:17401:15: warning: variable ‘num_quals’ set but not used [-Wunused-but-set-variable] 17401 | Int4 num_quals; | ^~~~~~~~~ sequin1.c: In function ‘GetWizardQualifierProblems’: sequin1.c:20626:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 20626 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c:20626:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch] sequin1.c: In function ‘VirusQualsOk’: sequin1.c:20931:5: warning: enumeration value ‘eVirusClass_Unknown’ not handled in switch [-Wswitch] 20931 | switch (wiz->virus_class) { | ^~~~~~ sequin1.c: In function ‘CulturedSamplesOk’: sequin1.c:21036:5: warning: enumeration value ‘eCulturedKingdom_Unknown’ not handled in switch [-Wswitch] 21036 | switch (wiz->cultured_kingdom) { | ^~~~~~ sequin1.c: In function ‘WizardSrcQualsOk’: sequin1.c:21347:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 21347 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c: In function ‘CreateWizardSrcQualsForm’: sequin1.c:22401:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 22401 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c:22401:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch] sequin1.c: In function ‘CheckFeatureQualsUniqueness’: sequin1.c:22719:8: warning: variable ‘num_rows’ set but not used [-Wunused-but-set-variable] 22719 | Int4 num_rows, row_num; | ^~~~~~~~ sequin1.c: In function ‘WizardFeatureQualsOk’: sequin1.c:22810:11: warning: variable ‘num_features’ set but not used [-Wunused-but-set-variable] 22810 | Int4 num_features; | ^~~~~~~~~~~~ sequin1.c: In function ‘TabTableToMultiModTabTable’: sequin1.c:23178:16: warning: unused variable ‘bsp’ [-Wunused-variable] 23178 | BioseqPtr bsp = NULL; | ^~~ sequin1.c: In function ‘MultiModTableToTabTable’: sequin1.c:23257:21: warning: variable ‘fq’ set but not used [-Wunused-but-set-variable] 23257 | WizardFeatQualPtr fq; | ^~ sequin1.c: In function ‘ShowAllFeatureQualSequences’: sequin1.c:23777:15: warning: variable ‘show_all’ set but not used [-Wunused-but-set-variable] 23777 | Boolean show_all = TRUE; | ^~~~~~~~ sequin1.c: In function ‘TabTableLineFromFeature’: sequin1.c:24725:14: warning: unused variable ‘vals’ [-Wunused-variable] 24725 | ValNodePtr vals = NULL, q_vnp; | ^~~~ sequin1.c: In function ‘PregenerateFeatures’: sequin1.c:24775:22: warning: unused variable ‘problems’ [-Wunused-variable] 24775 | CharPtr PNTR problems = NULL; | ^~~~~~~~ sequin1.c: In function ‘SetQualForSequencesFromWizardList’: sequin1.c:26026:20: warning: unused variable ‘rval’ [-Wunused-variable] 26026 | Boolean rval = FALSE; | ^~~~ sequin1.c: In function ‘CollectWizardSetType’: sequin1.c:27538:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 27538 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c:27538:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch] sequin1.c:27538:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch] sequin1.c: In function ‘SequencingMethodToDialog’: sequin1.c:28361:27: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 28361 | SequencingMethodInfoPtr info; | ^~~~ sequin1.c: In function ‘CollectWizardSourceType’: sequin1.c:28943:5: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 28943 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c:28943:5: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch] sequin1.c:28943:5: warning: enumeration value ‘eWizardType_DLoop’ not handled in switch [-Wswitch] sequin1.c:28943:5: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch] sequin1.c: In function ‘HaveWizardSourceType’: sequin1.c:28976:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 28976 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c:28976:3: warning: enumeration value ‘eWizardType_UnculturedSamples’ not handled in switch [-Wswitch] sequin1.c:28976:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch] sequin1.c:28976:3: warning: enumeration value ‘eWizardType_DLoop’ not handled in switch [-Wswitch] sequin1.c:28976:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch] sequin1.c: In function ‘WizardSourceTypeForm’: sequin1.c:29038:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 29038 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c:29038:3: warning: enumeration value ‘eWizardType_UnculturedSamples’ not handled in switch [-Wswitch] sequin1.c:29038:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch] sequin1.c:29038:3: warning: enumeration value ‘eWizardType_DLoop’ not handled in switch [-Wswitch] sequin1.c:29038:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch] sequin1.c: In function ‘PopulateAAPopup’: sequin1.c:29856:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 29856 | Uint1 first; | ^~~~~ sequin1.c: In function ‘CountAmbiProc’: sequin1.c:31452:11: warning: unused variable ‘normal’ [-Wunused-variable] 31452 | Int4 normal = 0; | ^~~~~~ sequin1.c: In function ‘OkToTrimAmbiguous’: sequin1.c:31765:25: warning: variable ‘p2’ set but not used [-Wunused-but-set-variable] 31765 | GrouP p2 = NULL; | ^~ sequin1.c:31764:25: warning: variable ‘p1’ set but not used [-Wunused-but-set-variable] 31764 | PrompT p1, title = NULL, pr = NULL, pt = NULL; | ^~ sequin1.c: In function ‘WGSVectorScreen’: sequin1.c:32753:15: warning: unused variable ‘reasons’ [-Wunused-variable] 32753 | CharPtr reasons[] = {"Low Quality", "Vector Contamination", "Low Quality and Vector Contamination"}; | ^~~~~~~ sequin1.c: In function ‘WGSSequenceAdjustment’: sequin1.c:32916:31: warning: too many arguments for format [-Wformat-extra-args] 32916 | fprintf (lip->fp, "%s (too short)\n", a->id, "Low Quality"); | ^~~~~~~~~~~~~~~~~~ sequin1.c:32841:15: warning: unused variable ‘quit_problems’ [-Wunused-variable] 32841 | CharPtr quit_problems = NULL; | ^~~~~~~~~~~~~ sequin1.c:32839:15: warning: unused variable ‘max_dist’ [-Wunused-variable] 32839 | Int4 max_dist = 20; | ^~~~~~~~ sequin1.c: In function ‘SetFastaText’: sequin1.c:33423:15: warning: unused variable ‘intro’ [-Wunused-variable] 33423 | CharPtr intro = NULL; | ^~~~~ sequin1.c: In function ‘ImportSeqCallback’: sequin1.c:33567:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] 33567 | Int4 x = 0; | ^ sequin1.c: In function ‘ExportWizardFASTA’: sequin1.c:33590:17: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable] 33590 | Boolean rval = FALSE; | ^~~~ sequin1.c: In function ‘ImportWizardFASTA’: sequin1.c:33624:15: warning: unused variable ‘changed’ [-Wunused-variable] 33624 | Boolean changed = FALSE; | ^~~~~~~ sequin1.c: In function ‘WizardFASTAFwd’: sequin1.c:33916:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 33916 | switch (frm->wiz->wizard_type) { | ^~~~~~ sequin1.c:33916:3: warning: enumeration value ‘eWizardType_UnculturedSamples’ not handled in switch [-Wswitch] sequin1.c:33916:3: warning: enumeration value ‘eWizardType_Viruses’ not handled in switch [-Wswitch] sequin1.c:33916:3: warning: enumeration value ‘eWizardType_CulturedSamples’ not handled in switch [-Wswitch] sequin1.c:33916:3: warning: enumeration value ‘eWizardType_IGS’ not handled in switch [-Wswitch] sequin1.c:33916:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch] sequin1.c:33916:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch] sequin1.c: In function ‘WizardFASTABack’: sequin1.c:34038:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 34038 | switch (frm->wiz->wizard_type) { | ^~~~~~ sequin1.c:34038:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch] sequin1.c: In function ‘WizardFastaHelpBtn’: sequin1.c:34089:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch] 34089 | switch (wiz->wizard_type) { | ^~~~~~ sequin1.c:34089:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch] In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/accutils.h:119, from sequin1.c:78: sequin1.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/accutils.h:119, from sequin1.c:78: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/accutils.h:119, from sequin1.c:78: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/accutils.h:119, from sequin1.c:78: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from sequin1.c:84: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:135, from ../include/ingenwin.h:62, from sequin1.c:89: ../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function] 180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function] 181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function] 182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function] 199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function] 200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/tax3api.h:51, from sequin1.c:92: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ In file included from sequin1.c:117: ../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function] 145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); | ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function] 285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function] 286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin1.c: In function ‘LaunchedGoogleEarth’: sequin1.c:1504:11: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1504 | system (cmmd); | ^~~~~~~~~~~~~ sequin1.c: In function ‘Entrez2QueryProc’: sequin1.c:9715:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9715 | system ("entrez2 &"); | ^~~~~~~~~~~~~~~~~~~~ At top level: sequin1.c:33848:16: warning: ‘IsSequencingMethodOkForTSA’ defined but not used [-Wunused-function] 33848 | static Boolean IsSequencingMethodOkForTSA (WizardTrackerPtr wiz) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ sequin1.c:33103:16: warning: ‘s_TSAFastaExample’ defined but not used [-Wunused-variable] 33103 | static CharPtr s_TSAFastaExample[] = { | ^~~~~~~~~~~~~~~~~ sequin1.c:32740:13: warning: ‘WGSVectorScreen’ defined but not used [-Wunused-function] 32740 | static void WGSVectorScreen (WizardTrackerPtr wiz, ValNodeBlockPtr block, Int4 min_length, Int4 max_dist) | ^~~~~~~~~~~~~~~ sequin1.c:32059:13: warning: ‘TrimTSABases’ defined but not used [-Wunused-function] 32059 | static void TrimTSABases (SeqEntryPtr PNTR sequences) | ^~~~~~~~~~~~ sequin1.c:29180:16: warning: ‘WizardAssemblyDescriptionForm’ defined but not used [-Wunused-function] 29180 | static Boolean WizardAssemblyDescriptionForm (WizardTrackerPtr wiz) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin1.c:29123:16: warning: ‘WizardCommentForm’ defined but not used [-Wunused-function] 29123 | static Boolean WizardCommentForm (WizardTrackerPtr wiz) | ^~~~~~~~~~~~~~~~~ sequin1.c:21709:16: warning: ‘s_TSASrcTblHelpMsgs’ defined but not used [-Wunused-variable] 21709 | static CharPtr s_TSASrcTblHelpMsgs[] = { | ^~~~~~~~~~~~~~~~~~~ sequin1.c:21228:16: warning: ‘TSASrcQualsOk’ defined but not used [-Wunused-function] 21228 | static Boolean TSASrcQualsOk (WizardTrackerPtr wiz) | ^~~~~~~~~~~~~ sequin1.c:20543:21: warning: ‘GetTSAQualifiersProblems’ defined but not used [-Wunused-function] 20543 | static CharPtr PNTR GetTSAQualifiersProblems (WizardTrackerPtr wiz) | ^~~~~~~~~~~~~~~~~~~~~~~~ sequin1.c:10760:13: warning: ‘ObjMgrReport’ defined but not used [-Wunused-function] 10760 | static void ObjMgrReport (IteM i) | ^~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from ../include/ingenwin.h:62, from sequin1.c:89: ../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable] 229 | static AsnModulePtr amp = ampx; | ^~~ ../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable] 228 | static AsnTypePtr at = atx; | ^~ ../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable] 227 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "blstspc.h23"; | ^~~~~~~~~~~ In file included from ../include/vibrant.h:133, from ../include/dlogutil.h:48, from sequin.h:82, from sequin1.c:53: sequin1.c: In function ‘BioseqViewFormMenus’: ../include/vibforms.h:522:25: warning: ‘mssgupd_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 522 | #define SetFormMenuItem Nlm_SetFormMenuItem | ^~~~~~~~~~~~~~~~~~~ sequin1.c:8356:27: note: ‘mssgupd_idx’ was declared here 8356 | Int2 mssgupd, mssgupd_idx; | ^~~~~~~~~~~ sequin1.c: In function ‘LaunchedGoogleEarth.constprop’: sequin1.c:1503:32: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=] 1503 | sprintf (cmmd, "open %s", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin1.c:53: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin1.c: In function ‘SubtoolDoneFuncEx’: sequin1.c:2000:5: warning: ‘bfp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2000 | SeqMgrClearFeatureIndexes (bfp->input_entityID, NULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin2.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin2.c: In function ‘ValidateModifierTableSequenceIDs’: sequin2.c:2847:16: warning: variable ‘deleted_rows’ set but not used [-Wunused-but-set-variable] 2847 | Int4 deleted_rows; | ^~~~~~~~~~~~ sequin2.c: In function ‘ImportFastaDialog’: sequin2.c:4587:17: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 4587 | SeqEntryPtr sep, new_sep_list, new_sep, test_sep; | ^~~ sequin2.c: In function ‘ExportOneRawSequence’: sequin2.c:4859:15: warning: variable ‘buffer’ set but not used [-Wunused-but-set-variable] 4859 | Char buffer [EXPORT_PAGE_WIDTH + 1]; | ^~~~~~ sequin2.c: In function ‘ExportOneDeltaBioseq’: sequin2.c:4958:15: warning: variable ‘buffer’ set but not used [-Wunused-but-set-variable] 4958 | Char buffer [EXPORT_PAGE_WIDTH + 1]; | ^~~~~~ sequin2.c: In function ‘FindBioseqWithValue’: sequin2.c:7807:17: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable] 7807 | BioseqPtr bsp = NULL; | ^~~ sequin2.c: In function ‘CollectNucleotideProteinAssociations’: sequin2.c:9174:73: warning: variable ‘p_msg’ set but not used [-Wunused-but-set-variable] 9174 | GrouP h, title_grp, all_gene_grp, all_prot_grp, k, c, p_msg; | ^~~~~ sequin2.c: In function ‘AddCDSToSeqEntry’: sequin2.c:9713:37: warning: unused variable ‘scope’ [-Wunused-variable] 9713 | SeqEntryPtr setsep = NULL, scope, old_scope; | ^~~~~ sequin2.c: In function ‘GetModNameStartFromEqLoc’: sequin2.c:11770:11: warning: variable ‘match_quote’ set but not used [-Wunused-but-set-variable] 11770 | Char match_quote; | ^~~~~~~~~~~ sequin2.c: In function ‘GetValueFromTitle’: sequin2.c:12334:15: warning: variable ‘is_nontext’ set but not used [-Wunused-but-set-variable] 12334 | Boolean is_nontext; | ^~~~~~~~~~ sequin2.c: In function ‘PrepareSourceAssistantTableData’: sequin2.c:13585:36: warning: variable ‘num_columns’ set but not used [-Wunused-but-set-variable] 13585 | Int4 column_width, num_columns = 0; | ^~~~~~~~~~~ sequin2.c: In function ‘SetOrganismText’: sequin2.c:13787:30: warning: variable ‘changed_val’ set but not used [-Wunused-but-set-variable] 13787 | Boolean changed_val = FALSE; | ^~~~~~~~~~~ sequin2.c: In function ‘ApplyRowListToIDAndTitleEdit’: sequin2.c:15438:32: warning: variable ‘next_org’ set but not used [-Wunused-but-set-variable] 15438 | CharPtr org_loc, org_end, next_org; | ^~~~~~~~ sequin2.c: In function ‘EditOrgModColumn’: sequin2.c:16349:26: warning: variable ‘row_list’ set but not used [-Wunused-but-set-variable] 16349 | ValNodePtr row_list = NULL; | ^~~~~~~~ sequin2.c: In function ‘ApplyOrgModColumn’: sequin2.c:17198:11: warning: variable ‘is_nontext’ set but not used [-Wunused-but-set-variable] 17198 | Boolean is_nontext; | ^~~~~~~~~~ sequin2.c: In function ‘PrepareSequenceAssistantTableData’: sequin2.c:18172:36: warning: variable ‘num_columns’ set but not used [-Wunused-but-set-variable] 18172 | Int4 column_width, num_columns = 0; | ^~~~~~~~~~~ sequin2.c: In function ‘UpdateIdAndTitleEditDialog’: sequin2.c:19591:50: warning: variable ‘has_space’ set but not used [-Wunused-but-set-variable] 19591 | Boolean has_dups, has_missing, has_bracket, has_space, has_unrec_mods = FALSE; | ^~~~~~~~~ sequin2.c: In function ‘SetIDAndTitleEditDialogErrorColumn’: sequin2.c:19741:74: warning: variable ‘has_space’ set but not used [-Wunused-but-set-variable] 19741 | Boolean has_dups, has_missing, has_bracket, has_unrec_mods = FALSE, has_space; | ^~~~~~~~~ sequin2.c: In function ‘GetDiffDlgCoord’: sequin2.c:20911:19: warning: variable ‘start_col’ set but not used [-Wunused-but-set-variable] 20911 | Int4 start_row, start_col; | ^~~~~~~~~ sequin2.c:20911:8: warning: variable ‘start_row’ set but not used [-Wunused-but-set-variable] 20911 | Int4 start_row, start_col; | ^~~~~~~~~ sequin2.c: In function ‘DownloadAndDisplay’: sequin2.c:26575:17: warning: variable ‘dbname’ set but not used [-Wunused-but-set-variable] 26575 | CharPtr dbname; | ^~~~~~ sequin2.c: In function ‘DownloadProc’: sequin2.c:26725:17: warning: variable ‘dbname’ set but not used [-Wunused-but-set-variable] 26725 | CharPtr dbname; | ^~~~~~ sequin2.c: In function ‘LoadSecondaryAccessionNumbersPlusHistFromFile’: sequin2.c:27908:17: warning: variable ‘need_seqid’ set but not used [-Wunused-but-set-variable] 27908 | Boolean need_seqid; | ^~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/aliparse.h:15, from sequin2.c:66: sequin2.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sequin2.c:26330:13: warning: ‘GetRawBsps’ defined but not used [-Wunused-function] 26330 | static void GetRawBsps (BioseqPtr bsp, Pointer userdata) | ^~~~~~~~~~ sequin2.c:24919:1: warning: ‘SequenceAssistantValidateSegments’ defined but not used [-Wunused-function] 24919 | SequenceAssistantValidateSegments | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin2.c:10685:17: warning: ‘GetSeqIdFromSeqEntryPtr’ defined but not used [-Wunused-function] 10685 | static SeqIdPtr GetSeqIdFromSeqEntryPtr (SeqEntryPtr sep) | ^~~~~~~~~~~~~~~~~~~~~~~ sequin2.c:8106:20: warning: ‘FindSeqEntryWithTranscriptID’ defined but not used [-Wunused-function] 8106 | static SeqEntryPtr FindSeqEntryWithTranscriptID (SeqEntryPtr sep, CharPtr transcript_id) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin2.c:6863:13: warning: ‘ParseDeflineToBiop’ defined but not used [-Wunused-function] 6863 | static void ParseDeflineToBiop(CharPtr defline, BioSourcePtr biop) | ^~~~~~~~~~~~~~~~~~ sequin2.c:3922:1: warning: ‘ReadOneSegSet’ defined but not used [-Wunused-function] 3922 | ReadOneSegSet | ^~~~~~~~~~~~~ sequin2.c: In function ‘InsertMostUsedFeatureValNodes’: sequin2.c:28184:22: warning: ‘new_item’ may be used uninitialized in this function [-Wmaybe-uninitialized] 28184 | new_item->next = old_list; | ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin3.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin3.c: In function ‘FarToNearProc’: sequin3.c:542:12: warning: variable ‘olddelta’ set but not used [-Wunused-but-set-variable] 542 | Pointer olddelta; | ^~~~~~~~ sequin3.c: In function ‘FixLocus’: sequin3.c:1019:15: warning: variable ‘embl_code’ set but not used [-Wunused-but-set-variable] 1019 | CharPtr ptr, embl_code; | ^~~~~~~~~ sequin3.c: In function ‘RemoveGeneXrefsOnBioseqs’: sequin3.c:2237:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 2237 | Int2 count; | ^~~~~ sequin3.c: In function ‘MakeCDS’: sequin3.c:7040:27: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable] 7040 | SeqEntryPtr psep, nsep, old, topsep; | ^~~~ sequin3.c: In function ‘ConvertOneCDSToMiscFeat’: sequin3.c:9217:26: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 9217 | || must_have_stops && !HasInternalStops (sfp)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ sequin3.c: In function ‘SuppressGenesOnFeatures’: sequin3.c:11108:20: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 11108 | ButtoN b; | ^ sequin3.c: In function ‘CheckForExistingMolInfo’: sequin3.c:12443:17: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable] 12443 | BioseqPtr bsp; | ^~~ sequin3.c: In function ‘RemoveNthCDS’: sequin3.c:19694:17: warning: variable ‘segCount’ set but not used [-Wunused-but-set-variable] 19694 | Int4 segCount; | ^~~~~~~~ sequin3.c: In function ‘InstantiateGapFeatCallback’: sequin3.c:20956:15: warning: variable ‘fuzz’ set but not used [-Wunused-but-set-variable] 20956 | IntFuzzPtr fuzz; | ^~~~ sequin3.c: In function ‘GlobalDisableStrainForwarding’: sequin3.c:23530:14: warning: unused variable ‘lip’ [-Wunused-variable] 23530 | LogInfoPtr lip; | ^~~ In file included from ../include/tax3api.h:51, from sequin3.c:71: sequin3.c: At top level: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sequin3.c:73: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sequin3.c:23279:16: warning: ‘SummarizeFieldDiff’ defined but not used [-Wunused-function] 23279 | static CharPtr SummarizeFieldDiff (FieldDiffPtr diff) | ^~~~~~~~~~~~~~~~~~ sequin3.c:22333:13: warning: ‘TestSegregateByList’ defined but not used [-Wunused-function] 22333 | static void TestSegregateByList (IteM i) | ^~~~~~~~~~~~~~~~~~~ sequin3.c:21921:13: warning: ‘LabelFungalRNAs’ defined but not used [-Wunused-function] 21921 | static void LabelFungalRNAs (IteM i) | ^~~~~~~~~~~~~~~ sequin3.c:21906:13: warning: ‘WriteAccessionsCallback’ defined but not used [-Wunused-function] 21906 | static void WriteAccessionsCallback (BioseqPtr bsp, Pointer data) | ^~~~~~~~~~~~~~~~~~~~~~~ sequin3.c:21398:13: warning: ‘ModernizeGenes’ defined but not used [-Wunused-function] 21398 | static void ModernizeGenes (IteM i) | ^~~~~~~~~~~~~~ sequin3.c:21371:13: warning: ‘ModernizeRNAs’ defined but not used [-Wunused-function] 21371 | static void ModernizeRNAs (IteM i) | ^~~~~~~~~~~~~ sequin3.c:21344:13: warning: ‘ModernizePCRs’ defined but not used [-Wunused-function] 21344 | static void ModernizePCRs (IteM i) | ^~~~~~~~~~~~~ sequin3.c:21234:13: warning: ‘TestTax3B’ defined but not used [-Wunused-function] 21234 | static void TestTax3B (IteM i) | ^~~~~~~~~ sequin3.c:21228:13: warning: ‘TestTax3A’ defined but not used [-Wunused-function] 21228 | static void TestTax3A (IteM i) | ^~~~~~~~~ sequin3.c:21095:13: warning: ‘NewAligmentViewer’ defined but not used [-Wunused-function] 21095 | static void NewAligmentViewer (IteM i) | ^~~~~~~~~~~~~~~~~ sequin3.c:21064:13: warning: ‘AddAllDbxrefsMenuItem’ defined but not used [-Wunused-function] 21064 | static void AddAllDbxrefsMenuItem (IteM i) | ^~~~~~~~~~~~~~~~~~~~~ sequin3.c:17134:16: warning: ‘s_NextQualifies’ defined but not used [-Wunused-function] 17134 | static Boolean s_NextQualifies (SeqFeatPtr sfp, | ^~~~~~~~~~~~~~~ sequin3.c:14836:25: warning: ‘FsaStreamProc’ defined but not used [-Wunused-function] 14836 | static void LIBCALLBACK FsaStreamProc ( | ^~~~~~~~~~~~~ sequin3.c:13705:13: warning: ‘PrepareTaxListProc’ defined but not used [-Wunused-function] 13705 | static void PrepareTaxListProc (IteM i) | ^~~~~~~~~~~~~~~~~~ sequin3.c:11155:19: warning: ‘CopyGeneRef’ defined but not used [-Wunused-function] 11155 | static GeneRefPtr CopyGeneRef (GeneRefPtr srcGrp) | ^~~~~~~~~~~ sequin3.c:5388:13: warning: ‘InstantiateAssemblyGapFeats’ defined but not used [-Wunused-function] 5388 | static void InstantiateAssemblyGapFeats (BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin3.c:5310:16: warning: ‘ValidateAssemblyGapFeat’ defined but not used [-Wunused-function] 5310 | static Boolean ValidateAssemblyGapFeat (SeqFeatPtr sfp, BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~~~~~~~ sequin3.c:5268:13: warning: ‘linkEvValues’ defined but not used [-Wunused-variable] 5268 | static Int4 linkEvValues [] = { | ^~~~~~~~~~~~ sequin3.c:5253:16: warning: ‘linkEvStrings’ defined but not used [-Wunused-variable] 5253 | static CharPtr linkEvStrings [] = { | ^~~~~~~~~~~~~ sequin3.c:5237:13: warning: ‘gapTypeValues’ defined but not used [-Wunused-variable] 5237 | static Int4 gapTypeValues [] = { | ^~~~~~~~~~~~~ sequin3.c:5220:16: warning: ‘gapTypeStrings’ defined but not used [-Wunused-variable] 5220 | static CharPtr gapTypeStrings [] = { | ^~~~~~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from sequin.h:82, from sequin3.c:45: sequin3.c: In function ‘AddMissingFieldsFromBioSample’: ../include/vibdefns.h:318:18: warning: ‘summ’ may be used uninitialized in this function [-Wmaybe-uninitialized] 318 | #define CheckBox Nlm_CheckBox | ^~~~~~~~~~~~ sequin3.c:23379:14: note: ‘summ’ was declared here 23379 | CharPtr summ, prev = NULL; | ^~~~ sequin3.c: In function ‘MakeBioSampleUpdateTable’: sequin3.c:23057:46: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23057 | || StringCmp (prev_biosample_id, diff->biosample_id) != 0) { | ~~~~^~~~~~~~~~~~~~ sequin3.c: In function ‘CompareWithBioSampleEx’: sequin3.c:23175:46: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23175 | || StringCmp (prev_biosample_id, diff->biosample_id) != 0) { | ~~~~^~~~~~~~~~~~~~ sequin3.c: In function ‘DoFixupSegSet’: sequin3.c:1126:18: warning: ‘%s’ directive writing up to 127 bytes into a region of size 32 [-Wformat-overflow=] 1126 | sprintf (str, "%sS%s", prefix, digs); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin3.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 144 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin3.c:1226:22: warning: ‘%s’ directive writing up to 127 bytes into a region of size 28 [-Wformat-overflow=] 1226 | sprintf (str, "SEG_%sS", prefix); | ^~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin3.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 133 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin4.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin4.c: In function ‘SplitSegmentedFeatsOnOneSet’: sequin4.c:1621:20: warning: variable ‘set_sep’ set but not used [-Wunused-but-set-variable] 1621 | SeqEntryPtr sep, set_sep; | ^~~~~~~ sequin4.c: In function ‘RemoveOneSegSet’: sequin4.c:2295:30: warning: variable ‘seg_bssp’ set but not used [-Wunused-but-set-variable] 2295 | BioseqSetPtr seg_nuc_prot, seg_bssp; | ^~~~~~~~ sequin4.c: In function ‘NewUpdateSeqAlign’: sequin4.c:3142:20: warning: variable ‘bssp’ set but not used [-Wunused-but-set-variable] 3142 | BioseqSetPtr bssp; | ^~~~ sequin4.c: In function ‘LaunchOrfViewer’: sequin4.c:7256:9: warning: variable ‘qu’ set but not used [-Wunused-but-set-variable] 7256 | ButtoN qu, b1; | ^~ sequin4.c: In function ‘MRnaFromCdsCallback’: sequin4.c:7624:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable] 7624 | Uint2 entityID; | ^~~~~~~~ sequin4.c: In function ‘FindNonACGT’: sequin4.c:8773:21: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 8773 | Int4 len; | ^~~ sequin4.c: In function ‘GetPubStatus’: sequin4.c:10801:14: warning: variable ‘csp’ set but not used [-Wunused-but-set-variable] 10801 | CitSubPtr csp; | ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from sequin4.c:72: sequin4.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sequin4.c:14157:13: warning: ‘CleanupTruncateByProtAlignForm’ defined but not used [-Wunused-function] 14157 | static void CleanupTruncateByProtAlignForm (GraphiC g, VoidPtr data) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin4.c:13699:25: warning: ‘FeatToDeltaSeq’ defined but not used [-Wunused-function] 13699 | static Int2 LIBCALLBACK FeatToDeltaSeq (Pointer data) | ^~~~~~~~~~~~~~ sequin4.c:13659:16: warning: ‘ListRawSequencesInAlignments’ defined but not used [-Wunused-function] 13659 | static Boolean ListRawSequencesInAlignments (GatherContextPtr gcp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin4.c:9889:13: warning: ‘PubConstraintClearText’ defined but not used [-Wunused-function] 9889 | static void PubConstraintClearText (PubConstraintPtr pcp) | ^~~~~~~~~~~~~~~~~~~~~~ sequin4.c:8853:18: warning: ‘RevStringUpper’ defined but not used [-Wunused-function] 8853 | static void NEAR RevStringUpper (CharPtr str) | ^~~~~~~~~~~~~~ sequin4.c:8504:13: warning: ‘MakeGeneXref’ defined but not used [-Wunused-function] 8504 | static void MakeGeneXref (SeqFeatPtr sfpr, SeqFeatPtr sfpg) | ^~~~~~~~~~~~ sequin4.c:6747:13: warning: ‘AddOrfListToDoc’ defined but not used [-Wunused-function] 6747 | static void AddOrfListToDoc(DoC doc, ValNodePtr list) | ^~~~~~~~~~~~~~~ sequin4.c:3264:17: warning: ‘CorrectIDsForSeqHistAlign’ defined but not used [-Wunused-function] 3264 | static SeqIdPtr CorrectIDsForSeqHistAlign (TAlignmentFilePtr afp, SeqEntryPtr sep) | ^~~~~~~~~~~~~~~~~~~~~~~~~ sequin4.c:3237:18: warning: ‘FindBioseqForSeqHist’ defined but not used [-Wunused-function] 3237 | static BioseqPtr FindBioseqForSeqHist (SeqAlignPtr salp) | ^~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from sequin4.c:55: ../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable] 61 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable] 60 | static AsnTypePtr at = atx; | ^~ ../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable] 59 | static AsnValxNodePtr avn = NULL; | ^~~ ../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnprt.h60"; | ^~~~~~~~~~~ sequin4.c: In function ‘MakeExonsFromFeatureIntervalsVisitFunc’: sequin4.c:5910:16: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5910 | intron = AddIntronForInterval (bsp->length, stop, last, strand, bsp, fuzz_from, fuzz_to, part_number); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin4.c:5801:15: note: ‘strand’ was declared here 5801 | Uint1 strand; | ^~~~~~ sequin4.c:5910:16: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5910 | intron = AddIntronForInterval (bsp->length, stop, last, strand, bsp, fuzz_from, fuzz_to, part_number); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin4.c:5800:15: note: ‘stop’ was declared here 5800 | Int4 stop; | ^~~~ sequin4.c:5908:16: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5908 | intron = AddIntronForInterval (start, -1, last, strand, bsp, fuzz_from, fuzz_to, part_number); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin4.c:5799:15: note: ‘start’ was declared here 5799 | Int4 start; | ^~~~~ sequin4.c: In function ‘ExplodeGroup.constprop’: sequin4.c:5521:9: warning: ‘nucbsp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5521 | SetExplodedProtein (orig_prot, nucprot_bssp, nucbsp, sfp, prot_id_str_prefix, cum_offset); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin5.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin5.c: In function ‘GeneExtendFunc’: sequin5.c:247:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 247 | GeneRefPtr grp; | ^~~ sequin5.c: In function ‘RemoveGBIDsProc’: sequin5.c:1372:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable] 1372 | SeqIdPtr nextid, sip; | ^~~~~~ sequin5.c: In function ‘RemoveGBProtIDsProc’: sequin5.c:1422:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable] 1422 | SeqIdPtr nextid, sip; | ^~~~~~ sequin5.c: In function ‘RemoveGIProc’: sequin5.c:1473:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable] 1473 | SeqIdPtr nextid, sip; | ^~~~~~ sequin5.c: In function ‘SetmRNAFieldString’: sequin5.c:6548:17: warning: variable ‘field_choice’ set but not used [-Wunused-but-set-variable] 6548 | Int4 field_choice; | ^~~~~~~~~~~~ sequin5.c: In function ‘GetCDSGeneProtField’: sequin5.c:7233:11: warning: variable ‘field_choice’ set but not used [-Wunused-but-set-variable] 7233 | Int4 field_choice; | ^~~~~~~~~~~~ sequin5.c: In function ‘GetRNAFieldString’: sequin5.c:7628:21: warning: variable ‘field_choice’ set but not used [-Wunused-but-set-variable] 7628 | Int4 field_choice; | ^~~~~~~~~~~~ sequin5.c:7622:14: warning: variable ‘rrp’ set but not used [-Wunused-but-set-variable] 7622 | RnaRefPtr rrp; | ^~~ sequin5.c: In function ‘SetRNAFieldString’: sequin5.c:7863:17: warning: variable ‘rrp’ set but not used [-Wunused-but-set-variable] 7863 | RnaRefPtr rrp; | ^~~ sequin5.c: In function ‘BioseqConstrainedFeaturesCallback’: sequin5.c:11293:21: warning: variable ‘cop’ set but not used [-Wunused-but-set-variable] 11293 | ConstraintOpPtr cop; | ^~~ sequin5.c: In function ‘SampleDialogCopy’: sequin5.c:13545:53: warning: variable ‘last_col’ set but not used [-Wunused-but-set-variable] 13545 | Int2 start_col = 0, end_col = 0, first_col, last_col; | ^~~~~~~~ sequin5.c:13545:42: warning: variable ‘first_col’ set but not used [-Wunused-but-set-variable] 13545 | Int2 start_col = 0, end_col = 0, first_col, last_col; | ^~~~~~~~~ sequin5.c: In function ‘TestFeatureFieldChoice’: sequin5.c:14066:31: warning: variable ‘dlg’ set but not used [-Wunused-but-set-variable] 14066 | FeatureFieldChoiceDialogPtr dlg; | ^~~ sequin5.c: In function ‘CreateClickableListForSourceFeats’: sequin5.c:14854:27: warning: variable ‘insertion_seq_txt’ set but not used [-Wunused-but-set-variable] 14854 | CharPtr transposon_txt, insertion_seq_txt, note_txt; | ^~~~~~~~~~~~~~~~~ sequin5.c:14854:11: warning: variable ‘transposon_txt’ set but not used [-Wunused-but-set-variable] 14854 | CharPtr transposon_txt, insertion_seq_txt, note_txt; | ^~~~~~~~~~~~~~ sequin5.c: In function ‘CDSToMiscFeatConvertFunc’: sequin5.c:15014:24: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable] 15014 | Boolean rval = FALSE; | ^~~~ sequin5.c: In function ‘GetRegionOpts’: sequin5.c:15152:25: warning: unused variable ‘rval’ [-Wunused-variable] 15152 | Boolean rval = FALSE; | ^~~~ sequin5.c: In function ‘NewConvertFeaturesByList’: sequin5.c:15322:14: warning: unused variable ‘only_pseudo’ [-Wunused-variable] 15322 | Boolean only_pseudo = FALSE; | ^~~~~~~~~~~ sequin5.c: In function ‘FeatureRemoveOrConvertAction’: sequin5.c:15588:25: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable] 15588 | SeqFeatPtr sfp; | ^~~ sequin5.c: In function ‘CDSGeneProtAECRDialog’: sequin5.c:18564:25: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 18564 | SeqEntryPtr sep; | ^~~ sequin5.c: In function ‘CDSGeneProtConvert’: sequin5.c:18931:18: warning: unused variable ‘str_dst’ [-Wunused-variable] 18931 | CharPtr str_dst = NULL; | ^~~~~~~ sequin5.c: In function ‘CDSGeneProtParse’: sequin5.c:19141:18: warning: variable ‘avd’ set but not used [-Wunused-but-set-variable] 19141 | ApplyValueData avd; | ^~~ sequin5.c: In function ‘RNAQualListDialog’: sequin5.c:21603:22: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 21603 | SeqEntryPtr sep; | ^~~ sequin5.c: In function ‘GetRNAFeatureList’: sequin5.c:21792:14: warning: variable ‘matches’ set but not used [-Wunused-but-set-variable] 21792 | Boolean matches; | ^~~~~~~ sequin5.c: In function ‘RNAQualConvertSwapParseList’: sequin5.c:21924:26: warning: variable ‘avd’ set but not used [-Wunused-but-set-variable] 21924 | ApplyValueData avd; | ^~~ sequin5.c: In function ‘RNAQualEditRemoveList’: sequin5.c:22021:20: warning: unused variable ‘rval’ [-Wunused-variable] 22021 | Boolean rval = TRUE; | ^~~~ sequin5.c: In function ‘GetGBQualSampleName’: sequin5.c:22729:14: warning: variable ‘num_feature_choices’ set but not used [-Wunused-but-set-variable] 22729 | Int4 num_feature_choices; | ^~~~~~~~~~~~~~~~~~~ sequin5.c: In function ‘ConvertGeneLocusTagToOldLocusTagCallback’: sequin5.c:22964:28: warning: variable ‘mp’ set but not used [-Wunused-but-set-variable] 22964 | LocusTagToOldLocusTagPtr mp; | ^~ sequin5.c: In function ‘NewSegregateBioseqSet’: sequin5.c:26425:22: warning: variable ‘p’ set but not used [-Wunused-but-set-variable] 26425 | PrompT p, p2; | ^ sequin5.c: In function ‘CompareBulkRows’: sequin5.c:27910:8: warning: variable ‘col’ set but not used [-Wunused-but-set-variable] 27910 | Int4 col; | ^~~ sequin5.c: In function ‘ResortBulkEditorRows’: sequin5.c:28177:20: warning: unused variable ‘matches’ [-Wunused-variable] 28177 | ValNodePtr matches = NULL, vnp; | ^~~~~~~ sequin5.c:28174:26: warning: unused variable ‘last_inserted’ [-Wunused-variable] 28174 | Int4 row_num, sub_num, last_inserted = 0, comp, col; | ^~~~~~~~~~~~~ sequin5.c: In function ‘UpdateBulkEdDisplay’: sequin5.c:29258:17: warning: unused variable ‘text_len’ [-Wunused-variable] 29258 | Int4 i, text_len = 0, sub_num; | ^~~~~~~~ sequin5.c: In function ‘AddColumnToRowList’: sequin5.c:29993:11: warning: unused variable ‘m’ [-Wunused-variable] 29993 | Int4 i, m = 0, f = 0, num_columns = 1; | ^ sequin5.c: In function ‘ApplyBulkEditCommon’: sequin5.c:30418:23: warning: unused variable ‘need_redraw’ [-Wunused-variable] 30418 | Boolean need_redraw = FALSE; | ^~~~~~~~~~~ sequin5.c: In function ‘CopyAllFieldsFromList’: sequin5.c:30773:8: warning: unused variable ‘num_full’ [-Wunused-variable] 30773 | Int4 num_full = 0; | ^~~~~~~~ sequin5.c: In function ‘BulkEditorObjectList’: sequin5.c:32741:22: warning: unused variable ‘subtype’ [-Wunused-variable] 32741 | Uint1 subtype = 0; | ^~~~~~~ sequin5.c: In function ‘BulkEditorBaseForm’: sequin5.c:32798:22: warning: variable ‘field_list’ set but not used [-Wunused-but-set-variable] 32798 | BulkEdFieldPtr field_list = NULL; | ^~~~~~~~~~ sequin5.c: In function ‘GetSpecificHostCorrectionCategory’: sequin5.c:33567:22: warning: unused variable ‘fmt’ [-Wunused-variable] 33567 | CharPtr fmt = "Unable to suggest correction for '%s'"; | ^~~ In file included from ../include/tax3api.h:51, from sequin5.c:78: sequin5.c: At top level: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ sequin5.c:32057:13: warning: ‘BulkSrcSetOrgModDescTF’ defined but not used [-Wunused-function] 32057 | static void BulkSrcSetOrgModDescTF (Pointer target, Pointer data, Uint2 mod_type) | ^~~~~~~~~~~~~~~~~~~~~~ sequin5.c:32036:16: warning: ‘BulkSrcGetOrgModDescTF’ defined but not used [-Wunused-function] 32036 | static Pointer BulkSrcGetOrgModDescTF (Uint1 data_choice, Pointer data, Uint2 mod_type) | ^~~~~~~~~~~~~~~~~~~~~~ sequin5.c:31734:23: warning: ‘GetBulkEditorFieldListForFeature’ defined but not used [-Wunused-function] 31734 | static BulkEdFieldPtr GetBulkEditorFieldListForFeature (SeqFeatPtr sfp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin5.c:31268:16: warning: ‘BulkGetPseudo’ defined but not used [-Wunused-function] 31268 | static Pointer BulkGetPseudo (Pointer data) | ^~~~~~~~~~~~~ sequin5.c:31257:13: warning: ‘BulkSetPseudo’ defined but not used [-Wunused-function] 31257 | static void BulkSetPseudo (Pointer target, Pointer val) | ^~~~~~~~~~~~~ sequin5.c:31246:16: warning: ‘BulkReleaseTrueFalse’ defined but not used [-Wunused-function] 31246 | static Pointer BulkReleaseTrueFalse (Pointer p) | ^~~~~~~~~~~~~~~~~~~~ sequin5.c:31080:15: warning: ‘BulkNucLocationDialog’ defined but not used [-Wunused-function] 31080 | static DialoG BulkNucLocationDialog (GrouP g, CharPtr name, SeqEntryPtr sep) | ^~~~~~~~~~~~~~~~~~~~~ sequin5.c:28858:28: warning: ‘TwoFieldBulkEditNew’ defined but not used [-Wunused-function] 28858 | static TwoFieldBulkEditPtr TwoFieldBulkEditNew (void) | ^~~~~~~~~~~~~~~~~~~ sequin5.c:28605:28: warning: ‘OneFieldBulkEditNew’ defined but not used [-Wunused-function] 28605 | static OneFieldBulkEditPtr OneFieldBulkEditNew (void) | ^~~~~~~~~~~~~~~~~~~ sequin5.c:28101:13: warning: ‘FlatCopyRows’ defined but not used [-Wunused-function] 28101 | static Int4 FlatCopyRows (BulkEditorRowPtr new_rows, BulkEditorRowPtr orig_rows, BulkEdFieldPtr field_list) | ^~~~~~~~~~~~ sequin5.c:27569:13: warning: ‘FreeBulkEditorValuesList’ defined but not used [-Wunused-function] 27569 | static void FreeBulkEditorValuesList (ValNodePtr PNTR values_list, Int4 num_rows, BulkEdFieldPtr field_list) | ^~~~~~~~~~~~~~~~~~~~~~~~ sequin5.c:21287:23: warning: ‘AECRRNAQualFree’ defined but not used [-Wunused-function] 21287 | static AECRRNAQualPtr AECRRNAQualFree (AECRRNAQualPtr ap) | ^~~~~~~~~~~~~~~ sequin5.c:12796:25: warning: ‘ParseFieldSrcFree’ defined but not used [-Wunused-function] 12796 | static ParseFieldSrcPtr ParseFieldSrcFree (ParseFieldSrcPtr pfsp) | ^~~~~~~~~~~~~~~~~ sequin5.c:438:13: warning: ‘ProcessOligo’ defined but not used [-Wunused-function] 438 | static void ProcessOligo (SeqEntryPtr sep, CharPtr sequence, CharPtr title) | ^~~~~~~~~~~~ sequin5.c:171:16: warning: ‘GetSequenceString’ defined but not used [-Wunused-function] 171 | static CharPtr GetSequenceString (BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~ sequin5.c:88:13: warning: ‘CommonLaunchBioseqViewer’ defined but not used [-Wunused-function] 88 | static void CommonLaunchBioseqViewer (SeqEntryPtr sep, CharPtr path, Boolean directToEditor) | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from sequin5.c:53: ../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable] 229 | static AsnModulePtr amp = ampx; | ^~~ ../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable] 228 | static AsnTypePtr at = atx; | ^~ ../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable] 227 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "blstspc.h23"; | ^~~~~~~~~~~ sequin5.c: In function ‘EditLocusActnProc’: sequin5.c:605:28: warning: ‘%s’ directive writing up to 15 bytes into a region of size between 13 and 76 [-Wformat-overflow=] 605 | sprintf (tmp, "%s%s", str, num); | ^~ ~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin5.c:47: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 79 bytes into a destination of size 76 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin5.c: In function ‘ConvertDescriptorFieldCallback’: sequin5.c:5784:18: warning: ‘dst_text’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5784 | avd.new_text = dst_text; | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from sequin.h:82, from sequin5.c:47: sequin5.c: In function ‘ApplyEditConvertRemoveCombo.constprop’: ../include/vibdefns.h:535:22: warning: ‘m’ may be used uninitialized in this function [-Wmaybe-uninitialized] 535 | #define AlignObjects Nlm_AlignObjects | ^~~~~~~~~~~~~~~~ sequin5.c:17563:42: note: ‘m’ was declared here 17563 | GrouP h, g1, k, n, m; | ^ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin6.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin6.c: In function ‘RemoveOrgModText’: sequin6.c:3069:35: warning: variable ‘next_mod’ set but not used [-Wunused-but-set-variable] 3069 | OrgModPtr mod, prev_mod = NULL, next_mod; | ^~~~~~~~ sequin6.c: In function ‘TrimCodingRegionsFoNsCallback’: sequin6.c:4576:31: warning: unused variable ‘cut’ [-Wunused-variable] 4576 | SeqLocPtr slp, sp, cut; | ^~~ sequin6.c:4576:22: warning: unused variable ‘slp’ [-Wunused-variable] 4576 | SeqLocPtr slp, sp, cut; | ^~~ sequin6.c: In function ‘GapLocationsFromNs’: sequin6.c:4750:15: warning: variable ‘seq_ext’ set but not used [-Wunused-but-set-variable] 4750 | ValNodePtr seq_ext; | ^~~~~~~ sequin6.c:4749:15: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 4749 | Int4 len; | ^~~ sequin6.c: In function ‘ApplyBioFeatToList’: sequin6.c:6400:23: warning: variable ‘oldscope’ set but not used [-Wunused-but-set-variable] 6400 | SeqEntryPtr nsep, oldscope; | ^~~~~~~~ sequin6.c: In function ‘RNAWordsFromString’: sequin6.c:13298:32: warning: variable ‘last_pos’ set but not used [-Wunused-but-set-variable] 13298 | CharPtr last_hit = NULL, last_pos = NULL; | ^~~~~~~~ sequin6.c:13298:15: warning: variable ‘last_hit’ set but not used [-Wunused-but-set-variable] 13298 | CharPtr last_hit = NULL, last_pos = NULL; | ^~~~~~~~ sequin6.c: In function ‘FeatureEditorActionGroup’: sequin6.c:14382:15: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 14382 | SeqEntryPtr sep; | ^~~ sequin6.c: In function ‘DoPartialFeatureProc’: sequin6.c:14631:16: warning: variable ‘dash_at_end’ set but not used [-Wunused-but-set-variable] 14631 | Boolean dash_at_end = FALSE; | ^~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from sequin6.c:60: sequin6.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ sequin6.c:9215:13: warning: ‘LongestMatch’ defined but not used [-Wunused-function] 9215 | static Int2 LongestMatch ( | ^~~~~~~~~~~~ sequin6.c:9121:13: warning: ‘RevcompString’ defined but not used [-Wunused-function] 9121 | static void RevcompString ( | ^~~~~~~~~~~~~ sequin6.c:9093:13: warning: ‘ExtractString’ defined but not used [-Wunused-function] 9093 | static void ExtractString ( | ^~~~~~~~~~~~~ sequin6.c:5459:1: warning: ‘RemoveTerminalNsFromLocation’ defined but not used [-Wunused-function] 5459 | RemoveTerminalNsFromLocation | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin6.c:5046:13: warning: ‘AppendFirstToFeat’ defined but not used [-Wunused-function] 5046 | static void AppendFirstToFeat (SeqFeatPtr sfp, Pointer userdata) | ^~~~~~~~~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from sequin.h:82, from sequin6.c:45: sequin6.c: In function ‘CreateFieldSubfieldDlg.constprop’: ../include/vibdefns.h:535:22: warning: ‘g2’ may be used uninitialized in this function [-Wmaybe-uninitialized] 535 | #define AlignObjects Nlm_AlignObjects | ^~~~~~~~~~~~~~~~ sequin6.c:430:29: note: ‘g2’ was declared here 430 | GrouP p, g, g2; | ^~ sequin7.c:46:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 46 | static char *date_of_compilation = __DATE__; | ^~~~~~~~ sequin7.c:47:36: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 47 | static char *time_of_compilation = __TIME__; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin7.c:53: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin7.c: In function ‘GeneExtendFunc’: sequin7.c:959:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable] 959 | GeneRefPtr grp; | ^~~ sequin7.c: In function ‘FinishConvertingToCDS’: sequin7.c:2771:17: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable] 2771 | SeqEntryPtr nsep; | ^~~~ sequin7.c: In function ‘SetBestFrame’: sequin7.c:5218:26: warning: variable ‘seq_str2’ set but not used [-Wunused-but-set-variable] 5218 | CharPtr seq_str1, seq_str2; | ^~~~~~~~ sequin7.c:5218:16: warning: variable ‘seq_str1’ set but not used [-Wunused-but-set-variable] 5218 | CharPtr seq_str1, seq_str2; | ^~~~~~~~ sequin7.c: In function ‘RemoveProteinsAndOptionallyRenormalize’: sequin7.c:5679:18: warning: unused variable ‘tmp’ [-Wunused-variable] 5679 | ValNodePtr tmp; | ^~~ sequin7.c:5675:18: warning: unused variable ‘ompc’ [-Wunused-variable] 5675 | OMProcControl ompc; | ^~~~ sequin7.c:5672:18: warning: unused variable ‘itemID’ [-Wunused-variable] 5672 | Uint4 itemID; | ^~~~~~ sequin7.c:5671:18: warning: unused variable ‘bsp’ [-Wunused-variable] 5671 | BioseqPtr bsp; | ^~~ sequin7.c: In function ‘RNABlastOptionNew’: sequin7.c:7045:17: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable] 7045 | Int2 rval; | ^~~~ sequin7.c: In function ‘GetSubListForRNAStrandCorrection’: sequin7.c:7325:27: warning: variable ‘found_id’ set but not used [-Wunused-but-set-variable] 7325 | Boolean found_id; | ^~~~~~~~ sequin7.c: In function ‘ShowClickableItemListEx’: sequin7.c:9473:28: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 9473 | SeqEntryPtr sep; | ^~~ sequin7.c: In function ‘ChooseFeaturesForConversion’: sequin7.c:9614:28: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 9614 | SeqEntryPtr sep; | ^~~ sequin7.c: In function ‘GetTableOptions’: sequin7.c:13793:30: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 13793 | SeqEntryPtr sep; | ^~~ sequin7.c: In function ‘RemoveCDSandmRNAForGene’: sequin7.c:14076:27: warning: variable ‘prev_xref’ set but not used [-Wunused-but-set-variable] 14076 | SeqFeatXrefPtr xref, prev_xref, next_xref; | ^~~~~~~~~ sequin7.c: In function ‘CombineToCreatePseudoGene’: sequin7.c:14159:48: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 14159 | || best_left == fcontext.left && best_right < fcontext.right) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin7.c: In function ‘TrimTaxFix’: sequin7.c:15679:46: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 15679 | || word_break - t->suggested_fix == 10 && StringNICmp (t->suggested_fix, "uncultured ", 11) == 0) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin7.c: In function ‘FindBestNTrimSites’: sequin7.c:16522:21: warning: unused variable ‘trim_list’ [-Wunused-variable] 16522 | ValNodePtr trim_list = NULL; | ^~~~~~~~~ sequin7.c: In function ‘BarcodeBlastOptionNew’: sequin7.c:16791:17: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable] 16791 | Int2 rval; | ^~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sequin7.c:74: sequin7.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/tax3api.h:51, from sequin7.c:77: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ sequin7.c: In function ‘GetSubListForRNAStrandCorrection’: sequin7.c:7390:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 7390 | system (cmmd); | ^~~~~~~~~~~~~ At top level: sequin7.c:14322:13: warning: ‘FindBadLatLonSourceFeat’ defined but not used [-Wunused-function] 14322 | static void FindBadLatLonSourceFeat (SeqFeatPtr sfp, Pointer userdata) | ^~~~~~~~~~~~~~~~~~~~~~~ sequin7.c:12208:13: warning: ‘RemoveBarcodeKeywordsFromLowTrace’ defined but not used [-Wunused-function] 12208 | static void RemoveBarcodeKeywordsFromLowTrace (ButtoN b) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin7.c:6629:16: warning: ‘DoesBioseqMatchStringConstraint’ defined but not used [-Wunused-function] 6629 | static Boolean DoesBioseqMatchStringConstraint (BioseqPtr bsp, StringConstraintXPtr scp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin7.c:4781:13: warning: ‘RemoveMultipleTitles’ defined but not used [-Wunused-function] 4781 | static void RemoveMultipleTitles (SeqEntryPtr sep, Pointer mydata, Int4 index, Int2 indent) | ^~~~~~~~~~~~~~~~~~~~ sequin7.c:47:14: warning: ‘time_of_compilation’ defined but not used [-Wunused-variable] 47 | static char *time_of_compilation = __TIME__; | ^~~~~~~~~~~~~~~~~~~ sequin7.c: In function ‘CombineToCreatePseudoGene’: sequin7.c:14273:27: warning: ‘int_strand’ may be used uninitialized in this function [-Wmaybe-uninitialized] 14273 | first_sfp->location = SeqLocIntNew (int_left, int_right, int_strand, sip); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin7.c:14159:48: warning: ‘best_right’ may be used uninitialized in this function [-Wmaybe-uninitialized] 14159 | || best_left == fcontext.left && best_right < fcontext.right) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin7.c:14159:18: warning: ‘best_left’ may be used uninitialized in this function [-Wmaybe-uninitialized] 14157 | } else if (feat_list == NULL | ~~~~~~~~~~~~~~~~~ 14158 | || best_left > fcontext.left | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 14159 | || best_left == fcontext.left && best_right < fcontext.right) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin8.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin8.c: In function ‘PopulateAAPopup’: sequin8.c:1198:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 1198 | Uint1 first; | ^~~~~ sequin8.c: In function ‘SelectBestRepeatsFromList’: sequin8.c:7867:18: warning: variable ‘best_len’ set but not used [-Wunused-but-set-variable] 7867 | Int4 best_len; | ^~~~~~~~ sequin8.c:7862:18: warning: variable ‘strand2’ set but not used [-Wunused-but-set-variable] 7862 | Uint1 strand1, strand2; | ^~~~~~~ sequin8.c:7862:9: warning: variable ‘strand1’ set but not used [-Wunused-but-set-variable] 7862 | Uint1 strand1, strand2; | ^~~~~~~ sequin8.c: In function ‘ExamineAln’: sequin8.c:8328:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 8328 | Int4 len, num_aln = 0; | ^~~ sequin8.c: In function ‘FindIntervalConflict’: sequin8.c:10165:39: warning: self-comparison always evaluates to true [-Wtautological-compare] 10165 | } else if (left2 <= left1 && right2 >= right2) { | ^~ sequin8.c: In function ‘BuildConflictLists’: sequin8.c:10507:69: warning: self-comparison always evaluates to false [-Wtautological-compare] 10507 | if (tpa_conflict != eIntervalConflict_none || prim_conflict != prim_conflict) { | ^~ sequin8.c:10513:69: warning: self-comparison always evaluates to false [-Wtautological-compare] 10513 | if (tpa_conflict != eIntervalConflict_none || prim_conflict != prim_conflict) { | ^~ sequin8.c: In function ‘ScrollToDiscrepancyItem’: sequin8.c:14861:17: warning: variable ‘special_flag’ set but not used [-Wunused-but-set-variable] 14861 | Boolean special_flag = FALSE; | ^~~~~~~~~~~~ sequin8.c: In function ‘SortVnpByLinkStatus’: sequin8.c:17767:33: warning: self-comparison always evaluates to false [-Wtautological-compare] 17767 | } else if (fcontext2.itemID < fcontext2.itemID) { | ^ sequin8.c: In function ‘SortVnpBymRNAPos’: sequin8.c:17784:22: warning: variable ‘mrna2’ set but not used [-Wunused-but-set-variable] 17784 | SeqFeatPtr mrna1, mrna2; | ^~~~~ sequin8.c:17784:15: warning: variable ‘mrna1’ set but not used [-Wunused-but-set-variable] 17784 | SeqFeatPtr mrna1, mrna2; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sequin8.c:57: sequin8.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/tax3api.h:51, from sequin8.c:63: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ sequin8.c:18941:19: warning: ‘DivideClickableItemListByEntityID’ defined but not used [-Wunused-function] 18941 | static ValNodePtr DivideClickableItemListByEntityID (ValNodePtr clickable_list) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin8.c:14351:13: warning: ‘VisitFeaturesInViewedBioseqs’ defined but not used [-Wunused-function] 14351 | static void VisitFeaturesInViewedBioseqs (Pointer userdata, VisitFeaturesFunc callback) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin8.c:12559:13: warning: ‘MakeProteinTitlesInSequinStyle’ defined but not used [-Wunused-function] 12559 | static void MakeProteinTitlesInSequinStyle (Uint2 entityID, SeqEntryPtr sep) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin8.c:12367:13: warning: ‘ShowAssemblyAlignment’ defined but not used [-Wunused-function] 12367 | static void ShowAssemblyAlignment (SeqAlignPtr salp) | ^~~~~~~~~~~~~~~~~~~~~ sequin8.c:8326:13: warning: ‘ExamineAln’ defined but not used [-Wunused-function] 8326 | static void ExamineAln (SeqAlignPtr sap) | ^~~~~~~~~~ sequin8.c:7262:16: warning: ‘DoesFirstRepeatContainAllOtherRepeats’ defined but not used [-Wunused-function] 7262 | static Boolean DoesFirstRepeatContainAllOtherRepeats (ValNodePtr start, ValNodePtr stop) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin8.c:6810:16: warning: ‘DoesRowContainPoint’ defined but not used [-Wunused-function] 6810 | static Boolean DoesRowContainPoint (SeqAlignRowPtr row, Int4 point) | ^~~~~~~~~~~~~~~~~~~ sequin8.c:6475:13: warning: ‘CKA_ShowAln’ defined but not used [-Wunused-function] 6475 | static void CKA_ShowAln(SeqAlignPtr sap, CKA_AccPtr acc_head) | ^~~~~~~~~~~ sequin8.c:6269:16: warning: ‘CKA_ValidateSeqAlign’ defined but not used [-Wunused-function] 6269 | static Boolean CKA_ValidateSeqAlign(SeqAlignPtr sap, CKA_AccPtr acc_head, Int4 bioseqlen, ValNodePtr PNTR errors) | ^~~~~~~~~~~~~~~~~~~~ sequin8.c:1538:18: warning: ‘SqnGetBioseqGivenSeqLoc’ defined but not used [-Wunused-function] 1538 | static BioseqPtr SqnGetBioseqGivenSeqLoc (SeqLocPtr slp, Uint2 entityID) | ^~~~~~~~~~~~~~~~~~~~~~~ sequin8.c:536:13: warning: ‘FixReadingFrame’ defined but not used [-Wunused-function] 536 | static void FixReadingFrame ( | ^~~~~~~~~~~~~~~ sequin8.c:309:13: warning: ‘ExtendOnePartialFeatureToEndOrGap’ defined but not used [-Wunused-function] 309 | static void ExtendOnePartialFeatureToEndOrGap (SeqFeatPtr sfp, Pointer userdata) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from sequin9.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin9.c: In function ‘DoVecScreens’: sequin9.c:629:19: warning: variable ‘hits’ set but not used [-Wunused-but-set-variable] 629 | Int2 hits; | ^~~~ sequin9.c: In function ‘AcceptArgumentFormProc’: sequin9.c:1529:18: warning: variable ‘choice’ set but not used [-Wunused-but-set-variable] 1529 | Int2 choice; | ^~~~~~ sequin9.c: In function ‘ExtendBothEnds’: sequin9.c:4838:17: warning: variable ‘oldbsp’ set but not used [-Wunused-but-set-variable] 4838 | BioseqPtr oldbsp; | ^~~~~~ sequin9.c: In function ‘Extend5Prime’: sequin9.c:4906:17: warning: variable ‘oldbsp’ set but not used [-Wunused-but-set-variable] 4906 | BioseqPtr oldbsp; | ^~~~~~ sequin9.c: In function ‘Extend3Prime’: sequin9.c:4966:17: warning: variable ‘oldbsp’ set but not used [-Wunused-but-set-variable] 4966 | BioseqPtr oldbsp; | ^~~~~~ sequin9.c: In function ‘FixProteinString’: sequin9.c:5177:16: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 5177 | Int4 start, stop, new_stop, prot_len; | ^~~~~ sequin9.c: In function ‘ShiftStopForLengthChange’: sequin9.c:5254:13: warning: variable ‘start’ set but not used [-Wunused-but-set-variable] 5254 | Int4 start, stop, new_stop; | ^~~~~ sequin9.c: In function ‘ExtendProtein5’: sequin9.c:5447:23: warning: variable ‘new_stop’ set but not used [-Wunused-but-set-variable] 5447 | Int4 stop, new_stop; | ^~~~~~~~ sequin9.c: In function ‘PrepareUpdateAlignmentForProtein’: sequin9.c:5975:17: warning: variable ‘changed_frame’ set but not used [-Wunused-but-set-variable] 5975 | Boolean changed_frame; | ^~~~~~~~~~~~~ sequin9.c: In function ‘DrawAlignDiffs’: sequin9.c:7468:20: warning: variable ‘len2’ set but not used [-Wunused-but-set-variable] 7468 | Int4 len1, len2, i; | ^~~~ sequin9.c:7468:14: warning: variable ‘len1’ set but not used [-Wunused-but-set-variable] 7468 | Int4 len1, len2, i; | ^~~~ sequin9.c: In function ‘MakeAlignDetails’: sequin9.c:7603:12: warning: variable ‘aln_length’ set but not used [-Wunused-but-set-variable] 7603 | Int4 aln_length; | ^~~~~~~~~~ sequin9.c: In function ‘MakeAlignSequence’: sequin9.c:7652:56: warning: variable ‘to’ set but not used [-Wunused-but-set-variable] 7652 | Int4 aln_length, len, lens, start, stop, from, to, i, j; | ^~ sequin9.c:7652:50: warning: variable ‘from’ set but not used [-Wunused-but-set-variable] 7652 | Int4 aln_length, len, lens, start, stop, from, to, i, j; | ^~~~ sequin9.c: In function ‘DrawUpdateAlignmentDiffs’: sequin9.c:12920:20: warning: variable ‘len2’ set but not used [-Wunused-but-set-variable] 12920 | Int4 len1, len2, i; | ^~~~ sequin9.c:12920:14: warning: variable ‘len1’ set but not used [-Wunused-but-set-variable] 12920 | Int4 len1, len2, i; | ^~~~ sequin9.c: In function ‘MakeAlignmentDetailsPicture’: sequin9.c:13005:12: warning: variable ‘aln_length’ set but not used [-Wunused-but-set-variable] 13005 | Int4 aln_length; | ^~~~~~~~~~ sequin9.c: In function ‘MakeUpdateAlignmentSequenceString’: sequin9.c:13087:44: warning: variable ‘to’ set but not used [-Wunused-but-set-variable] 13087 | Int4 len, lens, start, stop, from, to, i, j; | ^~ sequin9.c:13087:38: warning: variable ‘from’ set but not used [-Wunused-but-set-variable] 13087 | Int4 len, lens, start, stop, from, to, i, j; | ^~~~ sequin9.c: In function ‘SetPreviewSequenceSelectionByPosition’: sequin9.c:15261:46: warning: variable ‘curr_scroll’ set but not used [-Wunused-but-set-variable] 15261 | Int4 prevrow, curr_scroll, max_scroll; | ^~~~~~~~~~~ sequin9.c: In function ‘DoTestUpdateOneSequence’: sequin9.c:16366:30: warning: variable ‘update_bsp’ set but not used [-Wunused-but-set-variable] 16366 | BioseqPtr update_bsp = NULL; | ^~~~~~~~~~ sequin9.c:16365:30: warning: variable ‘update_entityID’ set but not used [-Wunused-but-set-variable] 16365 | Uint2 update_entityID = 0; | ^~~~~~~~~~~~~~~ sequin9.c: In function ‘UpdateAllSequences’: sequin9.c:16656:30: warning: unused variable ‘update_entityID’ [-Wunused-variable] 16656 | Uint2 update_entityID = 0; | ^~~~~~~~~~~~~~~ sequin9.c:16655:30: warning: unused variable ‘update_bsp’ [-Wunused-variable] 16655 | BioseqPtr update_bsp = NULL; | ^~~~~~~~~~ sequin9.c: In function ‘CleanupUpdateMultiSequence’: sequin9.c:16976:30: warning: unused variable ‘entityIDList’ [-Wunused-variable] 16976 | ValNodePtr entityIDList = NULL; | ^~~~~~~~~~~~ sequin9.c: In function ‘RemoveIdenticalUpdates’: sequin9.c:17219:30: warning: unused variable ‘update_entityID’ [-Wunused-variable] 17219 | Uint2 update_entityID = 0; | ^~~~~~~~~~~~~~~ sequin9.c: In function ‘UpdateSequenceViaDownload’: sequin9.c:18323:15: warning: variable ‘is_na’ set but not used [-Wunused-but-set-variable] 18323 | Boolean is_na; | ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from sequin9.c:47: sequin9.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from sequin9.c:50: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from sequin9.c:50: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from sequin9.c:50: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from sequin9.c:50: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/alignmgr2.h:111, from ../include/actutils.h:105, from sequin9.c:56: ../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function] 177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function] 178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ sequin9.c:215:13: warning: ‘TruncateCDS’ declared ‘static’ but never defined [-Wunused-function] 215 | static void TruncateCDS (SeqFeatPtr sfp, Uint1 frame, BioseqPtr pbsp); | ^~~~~~~~~~~ sequin9.c:16618:29: warning: ‘FeatureUpdateNew’ defined but not used [-Wunused-function] 16618 | static FeatureUpdateInfoPtr FeatureUpdateNew (BioseqPtr orig_bsp, BioseqPtr update_bsp) | ^~~~~~~~~~~~~~~~ sequin9.c:1466:16: warning: ‘StrSaveNoNullEncodeSpaces’ defined but not used [-Wunused-function] 1466 | static CharPtr StrSaveNoNullEncodeSpaces (CharPtr from) | ^~~~~~~~~~~~~~~~~~~~~~~~~ sequin9.c: In function ‘ListIds’: sequin9.c:16197:14: warning: ‘bssp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 16197 | for (s = bssp->seq_set; s != NULL; s = s->next) { | ~~^~~~~~~~~~~~~~~ sequin9.c: In function ‘AcceptArgumentFormProc’: sequin9.c:1670:39: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1670 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from sequin9.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin9.c:1684:37: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1684 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from sequin9.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin9.c:1635:39: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1635 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from sequin9.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin9.c:1649:37: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1649 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from sequin9.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin9.c:1600:39: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1600 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from sequin9.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin9.c:1614:37: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1614 | sprintf (cpy, "%s=%s", upp->param, last); | ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from sequin9.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin9.c: In function ‘TruncateSeqGraphValues.isra’: sequin9.c:3192:14: warning: ‘fmax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3192 | if (((FloatHiPtr)new_values)[newpos] > fmax) { | ^ sequin9.c:3195:14: warning: ‘fmin’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3195 | if (((FloatHiPtr)new_values)[newpos] < fmin) { | ^ sequin9.c: In function ‘PrepareUpdateAlignmentForProtein’: sequin9.c:5884:41: warning: ‘gene_sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5884 | if (fp == NULL || gene == NULL || gene->location == NULL) return; | ~~~~^~~~~~~~~~ sequin9.c:5981:17: note: ‘gene_sfp’ was declared here 5981 | SeqFeatPtr gene_sfp; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequin10.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sequin10.c: In function ‘DoAutoDefLine’: sequin10.c:198:17: warning: unused variable ‘uop’ [-Wunused-variable] 198 | UserObjectPtr uop; | ^~~ sequin10.c: In function ‘ApplyTableQuals’: sequin10.c:4576:26: warning: variable ‘fqtd’ set but not used [-Wunused-but-set-variable] 4576 | FeatureQualTableData fqtd; | ^~~~ sequin10.c: In function ‘OkCancelTellMeMore’: sequin10.c:4937:10: warning: variable ‘p1’ set but not used [-Wunused-but-set-variable] 4937 | PrompT p1; | ^~ sequin10.c: In function ‘LookupJournalTitlesInObjectTable’: sequin10.c:5094:11: warning: unused variable ‘rval’ [-Wunused-variable] 5094 | Boolean rval = TRUE; | ^~~~ sequin10.c: In function ‘EraseAllFieldsWhenBlank’: sequin10.c:5874:19: warning: unused variable ‘columns’ [-Wunused-variable] 5874 | ValNodePtr columns = NULL; | ^~~~~~~ sequin10.c: In function ‘ExternalSourceQualifierTableReader’: sequin10.c:6812:22: warning: variable ‘any_valid’ set but not used [-Wunused-but-set-variable] 6812 | Boolean any_valid = FALSE; | ^~~~~~~~~ sequin10.c: In function ‘LoadFeatureFieldTable’: sequin10.c:9115:24: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 9115 | SeqEntryPtr sep; | ^~~ sequin10.c: In function ‘OrgModListsMatch’: sequin10.c:10856:14: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 10856 | Boolean found; | ^~~~~ sequin10.c: In function ‘SubtypeListsMatch’: sequin10.c:11049:14: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 11049 | Boolean found; | ^~~~~ sequin10.c: In function ‘TrimSequencesByAlignment’: sequin10.c:12402:25: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 12402 | ButtoN b; | ^ sequin10.c: In function ‘AddOneFeatureBetween’: sequin10.c:12809:14: warning: variable ‘seqfeattype’ set but not used [-Wunused-but-set-variable] 12809 | Int4 seqfeattype; | ^~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sequin10.c:63: sequin10.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/tax3api.h:51, from sequin10.c:68: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ sequin10.c:14399:13: warning: ‘PrintTPAHistErrors’ defined but not used [-Wunused-function] 14399 | static void PrintTPAHistErrors (LogInfoPtr lip, ValNodePtr errors) | ^~~~~~~~~~~~~~~~~~ sequin10.c:12050:19: warning: ‘FindGeneInSeqEntryByLocusTag’ defined but not used [-Wunused-function] 12050 | static SeqFeatPtr FindGeneInSeqEntryByLocusTag (SeqEntryPtr sep, CharPtr locus_tag) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequin10.c:9201:16: warning: ‘GetRevSectionInterval’ defined but not used [-Wunused-function] 9201 | static Pointer GetRevSectionInterval (Uint1 data_choice, Pointer data, Pointer metadata) | ^~~~~~~~~~~~~~~~~~~~~ sequin10.c:9183:16: warning: ‘GetRevSectionSequence’ defined but not used [-Wunused-function] 9183 | static Pointer GetRevSectionSequence (Uint1 data_choice, Pointer data, Pointer metadata) | ^~~~~~~~~~~~~~~~~~~~~ sequin10.c:3058:19: warning: ‘FreeTableData’ defined but not used [-Wunused-function] 3058 | static ValNodePtr FreeTableData (ValNodePtr lines) | ^~~~~~~~~~~~~ sequin10.c:1495:19: warning: ‘OrgModTableColumnListFree’ defined but not used [-Wunused-function] 1495 | static ValNodePtr OrgModTableColumnListFree (ValNodePtr vnp) | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from sequin.h:82, from sequin10.c:45: sequin10.c: In function ‘AutoDefBaseFormCommon’: ../include/vibdefns.h:318:18: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] 318 | #define CheckBox Nlm_CheckBox | ^~~~~~~~~~~~ sequin10.c:726:24: note: ‘k’ was declared here 726 | GrouP p, g1, s1, s2, k, k2; | ^ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sequinx.c:46: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ : Psequin arm-linux-gnueabihf-gcc -o sbtedit -I. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c \ -lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb \ -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla \ -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi -lm sbtedit.c:48:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 48 | static char *date_of_compilation = __DATE__; | ^~~~~~~~ sbtedit.c:49:36: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 49 | static char *time_of_compilation = __TIME__; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from sequin.h:82, from sbtedit.c:55: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ sbtedit.c: In function ‘LookupTaxonomyFunc’: sbtedit.c:604:15: warning: variable ‘rsult’ set but not used [-Wunused-but-set-variable] 604 | Int4 rsult; | ^~~~~ At top level: sbtedit.c:49:14: warning: ‘time_of_compilation’ defined but not used [-Wunused-variable] 49 | static char *time_of_compilation = __TIME__; | ^~~~~~~~~~~~~~~~~~~ sbtedit.c:48:14: warning: ‘date_of_compilation’ defined but not used [-Wunused-variable] 48 | static char *date_of_compilation = __DATE__; | ^~~~~~~~~~~~~~~~~~~ : sbtedit arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvmain.c:80: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ udvmain.c: In function ‘Nlm_Main’: udvmain.c:232:8: warning: unused variable ‘rcL’ [-Wunused-variable] 232 | RecT rcL; | ^~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from udvmain.c:81: udvmain.c: At top level: ../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function] 206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from udvmain.c:81: ../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function] 207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from udvmain.c:81: ../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function] 151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function] 152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function] 247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); | ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function] 248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from udvmain.c:81: ../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function] 287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function] 288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function] 310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); | ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function] 311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function] 419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); | ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function] 420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o udv -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF udvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib \ -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant \ -lncbitool -lblastcompadj -lncbiobj \ -lncbi -lm arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvmain.c:138: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ ddvmain.c:147:13: warning: ‘DDV_myargs’ initialized and declared ‘extern’ 147 | extern Args DDV_myargs[NUMARGS] = { | ^~~~~~~~~~ ddvmain.c:267:16: warning: ‘DDV_UseNetwork’ defined but not used [-Wunused-function] 267 | static Boolean DDV_UseNetwork(void) | ^~~~~~~~~~~~~~ ddvmain.c: In function ‘Nlm_Main’: ddvmain.c:441:5: warning: ‘UseNetwork’ may be used uninitialized in this function [-Wmaybe-uninitialized] 441 | if (UseNetwork && EntrezIsInited()) EntrezBioseqFetchDisable(); | ^ arm-linux-gnueabihf-gcc -o ddv -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF ddvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib \ -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool \ -lblastcompadj -lncbiobj -lncbi \ -lm arm-linux-gnueabihf-gcc -g -o taxblast -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF taxblast_main.c \ -lblastapi -lblast -lnetblast -lncbiid1 -lncbitxc2 -lncbitool -lblastcompadj \ -lnetcli -lncbiobj -lconnssl -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from taxblast_main.c:35: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ taxblast_main.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 1 | static char const rcsid[] = "$Id: taxblast_main.c,v"; | ^~~~~ arm-linux-gnueabihf-gcc -g -o idfetch -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF idfetch.c -lncbiid1 -lnetcli -lncbiobj -lconnssl -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from idfetch.c:30: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ idfetch.c: In function ‘Nlm_Main’: idfetch.c:358:46: warning: variable ‘any_type’ set but not used [-Wunused-but-set-variable] 358 | found_colon = FALSE, dna_type = FALSE, any_type = FALSE; | ^~~~~~~~ idfetch.c:358:28: warning: variable ‘dna_type’ set but not used [-Wunused-but-set-variable] 358 | found_colon = FALSE, dna_type = FALSE, any_type = FALSE; | ^~~~~~~~ idfetch.c: In function ‘ProcessOneDocSum’: idfetch.c:803:25: warning: unused variable ‘e2ry’ [-Wunused-variable] 803 | Entrez2ReplyPtr e2ry; | ^~~~ idfetch.c:802:25: warning: unused variable ‘e2rq’ [-Wunused-variable] 802 | Entrez2RequestPtr e2rq; | ^~~~ idfetch.c: In function ‘IdFetch_func’: idfetch.c:852:13: warning: missing braces around initializer [-Wmissing-braces] 852 | SeqId si={SEQID_GI,0,0}; | ^ | {} idfetch.c:859:10: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable] 859 | Uint1 group_segs; | ^~~~~~~~~~ idfetch.c: In function ‘BEGetUidsFromQuery’: idfetch.c:1113:14: warning: unused variable ‘e2rp’ [-Wunused-variable] 1113 | E2ReplyPtr e2rp; | ^~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from idfetch.c:30: In function ‘strncpy’, inlined from ‘GetIntervalAccession’ at idfetch.c:1401:5: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 64 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ idfetch.c: In function ‘IdFetch_func’: idfetch.c:961:5: warning: ‘gi_state’ may be used uninitialized in this function [-Wmaybe-uninitialized] 961 | id_print_gi_state(gi_state,buf,sizeof(buf)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/string.h:495, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from idfetch.c:30: In function ‘strncpy’, inlined from ‘CreateMaxPlexParam’ at idfetch.c:1313:5, inlined from ‘Nlm_Main’ at idfetch.c:170:8: /usr/arm-linux-gnueabihf/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ idfetch.c: In function ‘Nlm_Main’: idfetch.c:661:15: warning: ‘type_int’ may be used uninitialized in this function [-Wmaybe-uninitialized] 661 | sip->choice = choice; | ~~~~~~~~~~~~^~~~~~~~ idfetch.c:140:7: note: ‘type_int’ was declared here 140 | int type_int; | ^~~~~~~~ arm-linux-gnueabihf-gcc -g -o asn2gb -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF asn2gb.c -lncbiid1 -lnetcli \ -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \ -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2gb.c: In function ‘HandleMultipleRecords’: asn2gb.c:1748:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1748 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c: In function ‘CompareFlatFiles’: asn2gb.c:1185:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1185 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1192:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1192 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1217:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1217 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1243:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1243 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1246:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1246 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1251:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1251 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1254:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1254 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c: In function ‘ReportDiffs’: asn2gb.c:1072:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1072 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1075:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1075 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1078:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1078 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1081:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1081 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1084:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1084 | system (cmmd); | ^~~~~~~~~~~~~ asn2gb.c:1097:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1097 | system (cmmd); | ^~~~~~~~~~~~~ At top level: asn2gb.c:1291:13: warning: ‘CheckOrder’ defined but not used [-Wunused-function] 1291 | static void CheckOrder ( | ^~~~~~~~~~ asn2gb.c:968:13: warning: ‘FreeUnpubAffil’ defined but not used [-Wunused-function] 968 | static void FreeUnpubAffil ( | ^~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: In function ‘sprintf’, inlined from ‘HandleMultipleRecords.constprop’ at asn2gb.c:1626:9: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘HandleMultipleRecords.constprop’ at asn2gb.c:1628:9: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c: In function ‘HandleMultipleRecords.constprop’: asn2gb.c:1250:43: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=] 1250 | sprintf (cmmd, "./oldasn2gb -f p -i %s -o %s", path3, path1); | ^~ ...... 1661 | CompareFlatFiles (path1, path2, path3, sep, ofp, | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 8215 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c:1253:43: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=] 1253 | sprintf (cmmd, "./newasn2gb -f p -i %s -o %s", path3, path2); | ^~ ...... 1661 | CompareFlatFiles (path1, path2, path3, sep, ofp, | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 8215 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c:1242:38: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 241 [-Wformat-overflow=] 1242 | sprintf (cmmd, "./oldasn2gb -i %s -o %s", path3, path1); | ^~ ...... 1661 | CompareFlatFiles (path1, path2, path3, sep, ofp, | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 20 and 8210 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c:1245:38: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 241 [-Wformat-overflow=] 1245 | sprintf (cmmd, "./newasn2gb -i %s -o %s", path3, path2); | ^~ ...... 1661 | CompareFlatFiles (path1, path2, path3, sep, ofp, | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 20 and 8210 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c:1258:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 248 [-Wformat-overflow=] 1258 | sprintf (cmmd, "diff -b %s %s > %s", path1, path2, path3); | ^~ ...... 1661 | CompareFlatFiles (path1, path2, path3, sep, ofp, | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 12298 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c:1268:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=] 1268 | sprintf (cmmd, "cat %s", path3); | ^~ ...... 1661 | CompareFlatFiles (path1, path2, path3, sep, ofp, | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c:1216:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=] 1216 | sprintf (cmmd, "%s %s -i %s -o %s", asn2flat, arguments, path3, path2); | ^~ ...... 1661 | CompareFlatFiles (path1, path2, path3, sep, ofp, | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8200) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c:1184:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=] 1184 | sprintf (cmmd, "%s %s -i %s -o %s", asn2flat, arguments, path3, path1); | ^~ ...... 1661 | CompareFlatFiles (path1, path2, path3, sep, ofp, | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8200) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c:1191:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=] 1191 | sprintf (cmmd, "%s %s -i %s -o %s", asn2flat, arguments, path3, path2); | ^~ ...... 1661 | CompareFlatFiles (path1, path2, path3, sep, ofp, | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8200) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gb.c:1747:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 253 [-Wformat-overflow=] 1747 | sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gb.c:41: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o tbl2asn -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF tbl2asn.c -lncbitool -lblastcompadj \ -lncbiobj -lnetcli -lconnssl -lncbi -lm tbl2asn.c:45:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 45 | static char *date_of_compilation = __DATE__; | ^~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from tbl2asn.c:47: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ tbl2asn.c: In function ‘HasTaxon’: tbl2asn.c:872:11: warning: comparison between pointer and zero character constant [-Wpointer-compare] 872 | if (orp == FALSE) return FALSE; | ^~ tbl2asn.c:872:7: note: did you mean to dereference the pointer? 872 | if (orp == FALSE) return FALSE; | ^ tbl2asn.c: In function ‘ProcessOneAnnot’: tbl2asn.c:2566:15: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable] 2566 | SeqEntryPtr sep; | ^~~ tbl2asn.c: In function ‘WarnAboutIncompleteFileRead’: tbl2asn.c:4297:16: warning: variable ‘str’ set but not used [-Wunused-but-set-variable] 4297 | CharPtr str; | ^~~ tbl2asn.c: In function ‘MakeOneRnaTitle’: tbl2asn.c:5536:22: warning: variable ‘cds’ set but not used [-Wunused-but-set-variable] 5536 | SeqFeatPtr cds; | ^~~ tbl2asn.c: In function ‘FindSingleNucleotideOrNucProtSetInBioseqInSet’: tbl2asn.c:6986:30: warning: variable ‘single_result’ set but not used [-Wunused-but-set-variable] 6986 | SeqEntryPtr single = NULL, single_result; | ^~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/aliparse.h:15, from tbl2asn.c:66: tbl2asn.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ In file included from ../include/tax3api.h:51, from tbl2asn.c:69: ../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function] 183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); | ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function] 184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~~~~~ tbl2asn.c:6580:16: warning: ‘ValidateAssemblyGapFeat’ defined but not used [-Wunused-function] 6580 | static Boolean ValidateAssemblyGapFeat (SeqFeatPtr sfp, BioseqPtr bsp) | ^~~~~~~~~~~~~~~~~~~~~~~ tbl2asn.c:6005:20: warning: ‘GetDescriptorTypeAlreadyInList’ defined but not used [-Wunused-function] 6005 | static SeqDescrPtr GetDescriptorTypeAlreadyInList ( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tbl2asn.c:5901:13: warning: ‘ParseOneOrgLabel’ defined but not used [-Wunused-function] 5901 | static void ParseOneOrgLabel ( | ^~~~~~~~~~~~~~~~ tbl2asn.c:2654:16: warning: ‘ExceptionExplainsMismatch’ defined but not used [-Wunused-function] 2654 | static Boolean ExceptionExplainsMismatch (CharPtr except_text) | ^~~~~~~~~~~~~~~~~~~~~~~~~ tbl2asn.c: In function ‘MakeNucProtCDS’: tbl2asn.c:4960:28: warning: ‘%s’ directive writing up to 63 bytes into a region of size 60 [-Wformat-overflow=] 4960 | sprintf (lcl, "lcl|%s", id); | ^~ ~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from tbl2asn.c:47: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 68 bytes into a destination of size 64 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tbl2asn.c:4945:26: warning: ‘%s’ directive writing up to 63 bytes into a region of size 60 [-Wformat-overflow=] 4945 | sprintf (lcl, "lcl|%s", id); | ^~ ~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from tbl2asn.c:47: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 68 bytes into a destination of size 64 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -o gene2xml -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF gene2xml.c -lnetcli -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from gene2xml.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gene2xml.c: In function ‘ProcessOneRecord’: gene2xml.c:364:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 364 | system (cmmd); | ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -o entrez2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF entrez2.c -lncbiid1 -lnetcli -lncbidesk \ -lblastapi -lblast -lncbimmdb -lncbitool -lblastcompadj \ -lncbiobj -lvibrant -lconnssl -lncbi \ -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from entrez2.c:49: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ entrez2.c: In function ‘Nlm_Main’: entrez2.c:868:12: warning: variable ‘server’ set but not used [-Wunused-but-set-variable] 868 | CharPtr server = "www.ncbi.nlm.nih.gov"; | ^~~~~~ entrez2.c:866:12: warning: variable ‘port’ set but not used [-Wunused-but-set-variable] 866 | Uint2 port = 2441; | ^~~~ entrez2.c:865:12: warning: variable ‘path’ set but not used [-Wunused-but-set-variable] 865 | CharPtr path = "/entrez/utils/entrez2server.fcgi"; | ^~~~ At top level: entrez2.c:726:13: warning: ‘AboutProc’ defined but not used [-Wunused-function] 726 | static void AboutProc (IteM i) | ^~~~~~~~~ : entrez2 arm-linux-gnueabihf-gcc -g -o gbseqget -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF gbseqget.c -lncbiid1 -lnetcli \ -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \ -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from gbseqget.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -g -o asn2all -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF asn2all.c ncbithr.o -lncbiid1 \ -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \ -lm -lpthread In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2all.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2all.c: In function ‘DoLockFarComponents’: asn2all.c:68:27: warning: variable ‘stop_time’ set but not used [-Wunused-but-set-variable] 68 | time_t start_time, stop_time; | ^~~~~~~~~ asn2all.c:68:15: warning: variable ‘start_time’ set but not used [-Wunused-but-set-variable] 68 | time_t start_time, stop_time; | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -o asn2asn -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF asn2asn.c -lncbiid1 -lnetcli -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from asn2asn.c:17: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -g -o asn2fsa -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF asn2fsa.c ncbithr.o -lncbiid1 \ -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \ -lm -lpthread In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2fsa.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asn2fsa.c: In function ‘AddBspToList’: asn2fsa.c:217:15: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable] 217 | ValNodePtr vnp; | ^~~ asn2fsa.c: In function ‘DoLockFarComponents’: asn2fsa.c:408:27: warning: variable ‘stop_time’ set but not used [-Wunused-but-set-variable] 408 | time_t start_time, stop_time; | ^~~~~~~~~ asn2fsa.c:408:15: warning: variable ‘start_time’ set but not used [-Wunused-but-set-variable] 408 | time_t start_time, stop_time; | ^~~~~~~~~~ asn2fsa.c: In function ‘ProcessMultipleRecord’: asn2fsa.c:793:32: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=] 793 | sprintf (cmmd, "zcat %s", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2fsa.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2fsa.c:786:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 250 [-Wformat-overflow=] 786 | sprintf (cmmd, "gzcat %s", path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2fsa.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2fsa.c:782:26: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 255 [-Wformat-overflow=] 782 | sprintf (cmmd, "%s %s", gzcatprog, path); | ^~ ~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2fsa.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -o asndisc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF asndisc.c ncbithr.o -lncbiid1 \ -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \ -lm -lpthread In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asndisc.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asndisc.c: In function ‘ProcessMultipleRecord’: asndisc.c:735:19: warning: variable ‘memory_usage’ set but not used [-Wunused-but-set-variable] 735 | Boolean memory_usage = FALSE; | ^~~~~~~~~~~~ asndisc.c:733:19: warning: variable ‘detailed_report’ set but not used [-Wunused-but-set-variable] 733 | Boolean detailed_report = FALSE; | ^~~~~~~~~~~~~~~ asndisc.c:729:19: warning: variable ‘subcit’ set but not used [-Wunused-but-set-variable] 729 | SeqDescrPtr subcit = NULL; | ^~~~~~ arm-linux-gnueabihf-gcc -o asnmacro -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF asnmacro.c -lblastapi -lblast -lncbitool -lblastcompadj \ -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asnmacro.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from asnmacro.c:54: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ asnmacro.c:147:20: warning: ‘GlobalAlign2Seq’ defined but not used [-Wunused-function] 147 | static SeqAlignPtr GlobalAlign2Seq (BioseqPtr bsp1, BioseqPtr bsp2, BoolPtr revcomp) | ^~~~~~~~~~~~~~~ In file included from asnmacro.c:57: ../include/asnmacro.h:1376:21: warning: ‘amp’ defined but not used [-Wunused-variable] 1376 | static AsnModulePtr amp = ampx; | ^~~ ../include/asnmacro.h:1375:19: warning: ‘at’ defined but not used [-Wunused-variable] 1375 | static AsnTypePtr at = atx; | ^~ ../include/asnmacro.h:1374:23: warning: ‘avn’ defined but not used [-Wunused-variable] 1374 | static AsnValxNodePtr avn = avnx; | ^~~ ../include/asnmacro.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable] 12 | static char * asnfilename = "asnmacro.h11"; | ^~~~~~~~~~~ asnmacro.c: In function ‘AsnIoFromOutputStream’: asnmacro.c:233:14: warning: ‘aip’ may be used uninitialized in this function [-Wmaybe-uninitialized] 233 | AsnIoPtr aip; | ^~~ arm-linux-gnueabihf-gcc -g -o asnval -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF asnval.c ncbithr.o -lncbiid1 \ -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \ -lm -lpthread In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asnval.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ asnval.c: In function ‘DoLockFarComponents’: asnval.c:558:27: warning: variable ‘stop_time’ set but not used [-Wunused-but-set-variable] 558 | time_t start_time, stop_time; | ^~~~~~~~~ asnval.c:558:15: warning: variable ‘start_time’ set but not used [-Wunused-but-set-variable] 558 | time_t start_time, stop_time; | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -o cleanasn -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF cleanasn.c -lblastapi -lblast -lncbiid1 \ -lncbitool -lblastcompadj -lnetcli -lncbiobj -lconnssl -lncbi \ -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cleanasn.c: In function ‘FindISOJTA’: cleanasn.c:2186:17: warning: variable ‘is_issn’ set but not used [-Wunused-but-set-variable] 2186 | Boolean is_issn = FALSE; | ^~~~~~~ cleanasn.c: In function ‘JournalIsPresent’: cleanasn.c:10641:14: warning: variable ‘is_issn’ set but not used [-Wunused-but-set-variable] 10641 | Boolean is_issn = FALSE; | ^~~~~~~ cleanasn.c: In function ‘RemoveGIProc’: cleanasn.c:10946:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable] 10946 | SeqIdPtr nextid, sip; | ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from cleanasn.c:66: cleanasn.c: At top level: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ cleanasn.c: In function ‘ReportAsnDiffs’: cleanasn.c:3907:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3907 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c: In function ‘DoGBFFReport’: cleanasn.c:8330:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8330 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:8333:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8333 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:8359:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8359 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:8388:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8388 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:8446:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8446 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:8449:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8449 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c: In function ‘DoValidatorReport’: cleanasn.c:8505:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8505 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:8508:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8508 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:8536:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8536 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c: In function ‘CppBasicCleanup’: cleanasn.c:11556:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 11556 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:11560:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 11560 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:11586:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 11586 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:11588:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 11588 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:11590:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 11590 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:11592:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 11592 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:11594:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 11594 | system (cmmd); | ^~~~~~~~~~~~~ cleanasn.c:11604:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 11604 | system (cmmd); | ^~~~~~~~~~~~~ At top level: cleanasn.c:14106:13: warning: ‘AccessionToGi’ defined but not used [-Wunused-function] 14106 | static Int4 AccessionToGi (CharPtr string) | ^~~~~~~~~~~~~ cleanasn.c:14065:16: warning: ‘PvtStrToLong’ defined but not used [-Wunused-function] 14065 | static Boolean PvtStrToLong (CharPtr str, Int4Ptr longval) | ^~~~~~~~~~~~ cleanasn.c:12099:20: warning: ‘MakeVirtualProtein’ defined but not used [-Wunused-function] 12099 | static SeqEntryPtr MakeVirtualProtein (void) | ^~~~~~~~~~~~~~~~~~ cleanasn.c:10401:13: warning: ‘CheckPubmedSI’ defined but not used [-Wunused-function] 10401 | static void CheckPubmedSI ( | ^~~~~~~~~~~~~ cleanasn.c:10219:13: warning: ‘DoUnpublishedReport’ defined but not used [-Wunused-function] 10219 | static void DoUnpublishedReport ( | ^~~~~~~~~~~~~~~~~~~ cleanasn.c:9089:19: warning: ‘DuplicateStringList’ defined but not used [-Wunused-function] 9089 | static ValNodePtr DuplicateStringList ( | ^~~~~~~~~~~~~~~~~~~ cleanasn.c:6073:16: warning: ‘IsStopWord’ defined but not used [-Wunused-function] 6073 | static Boolean IsStopWord ( | ^~~~~~~~~~ cleanasn.c:5235:13: warning: ‘FindOneCds’ defined but not used [-Wunused-function] 5235 | static void FindOneCds ( | ^~~~~~~~~~ cleanasn.c:5214:13: warning: ‘PrintSegSeqTitleAfter’ defined but not used [-Wunused-function] 5214 | static void PrintSegSeqTitleAfter ( | ^~~~~~~~~~~~~~~~~~~~~ cleanasn.c:5193:13: warning: ‘PrintSegSeqTitleBefore’ defined but not used [-Wunused-function] 5193 | static void PrintSegSeqTitleBefore ( | ^~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:5178:13: warning: ‘PrintPartsTitle’ defined but not used [-Wunused-function] 5178 | static void PrintPartsTitle ( | ^~~~~~~~~~~~~~~ cleanasn.c:4899:13: warning: ‘CountParts’ defined but not used [-Wunused-function] 4899 | static void CountParts ( | ^~~~~~~~~~ cleanasn.c:4848:13: warning: ‘NormalizeSegSetTitle’ defined but not used [-Wunused-function] 4848 | static void NormalizeSegSetTitle ( | ^~~~~~~~~~~~~~~~~~~~ cleanasn.c:1910:13: warning: ‘FindSegSeq’ defined but not used [-Wunused-function] 1910 | static void FindSegSeq ( | ^~~~~~~~~~ cleanasn.c: In function ‘DoValidatorReport’: cleanasn.c:8504:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=] 8504 | sprintf (cmmd, "%s -i %s -o stdout -Q 1 -r -l | sort > %s", asnval, path3, path1); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 8226) into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:8507:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=] 8507 | sprintf (cmmd, "%s -i %s -o stdout -Q 1 -r -l | sort > %s", asnval, path4, path2); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 8226) into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:8510:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 504 [-Wformat-overflow=] 8510 | sprintf (cmmd, "diff -h %s %s > %s", path1, path2, path5); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 12298 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:8535:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=] 8535 | sprintf (cmmd, "rm %s; rm %s; rm %s; rm %s; rm %s", path1, path2, path3, path4, path5); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 24 and 20499 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c: In function ‘CppBasicCleanup’: cleanasn.c:11553:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 447 [-Wformat-overflow=] 11553 | sprintf (cmmd, "%s -i %s | cleanasn -a e -o %s", | ^~ 11554 | "~/ncbi_cxx/compilers/xCode/build/bin/Debug/test_basic_cleanup", 11555 | path1, path2); | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 86 and 8276 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:11558:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 500 [-Wformat-overflow=] 11558 | sprintf (cmmd, "cleanasn -i %s -o %s -K b", | ^~ 11559 | path1, path3); | ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 22 and 8212 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:11593:28: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 507 [-Wformat-overflow=] 11593 | sprintf (cmmd, "diff %s %s >> ~/Desktop/diffclean.txt", path3, path2); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 34 and 8224 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:11603:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=] 11603 | sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c: In function ‘DoGBFFReport’: cleanasn.c:8445:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=] 8445 | sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep); | ^~ ~~~~~ cleanasn.c:8445:20: note: assuming directive output of 7 bytes 8445 | sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 13 or more bytes (assuming 8210) into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:8448:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=] 8448 | sprintf (cmmd, "rm %s; rm %s", path1, path2); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 8199 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:8358:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 507 [-Wformat-overflow=] 8358 | sprintf (cmmd, "%s %s -i %s -o %s", cfp->asn2flat, arguments, path3, path2); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8200) into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:8361:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 504 [-Wformat-overflow=] 8361 | sprintf (cmmd, "diff -h %s %s > %s", path1, path2, path3); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 12298 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:8387:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=] 8387 | sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:8329:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=] 8329 | sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep); | ^~ ~~~~~ cleanasn.c:8329:20: note: assuming directive output of 7 bytes 8329 | sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 13 or more bytes (assuming 8210) into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:8332:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=] 8332 | sprintf (cmmd, "rm %s; rm %s", path1, path2); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 8199 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c: In function ‘ReportAsnDiffs’: cleanasn.c:3872:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 501 [-Wformat-overflow=] 3872 | sprintf (cmmd, "diff -b -h %s %s > %s", path1, path2, path3); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 16 and 12301 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cleanasn.c:3906:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=] 3906 | sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3); | ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:867, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from cleanasn.c:45: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 512 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -o insdseqget -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF insdseqget.c -lncbiid1 -lnetcli \ -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \ -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from insdseqget.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -g -o nps2gps -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF nps2gps.c -lncbitool -lblastcompadj \ -lncbiobj -lconnssl -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from nps2gps.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ nps2gps.c: In function ‘LclMakeOneRnaTitle’: nps2gps.c:422:22: warning: variable ‘cds’ set but not used [-Wunused-but-set-variable] 422 | SeqFeatPtr cds; | ^~~ nps2gps.c: In function ‘MakeIdFromLocation’: nps2gps.c:706:16: warning: variable ‘altid’ set but not used [-Wunused-but-set-variable] 706 | ValNodePtr altid; | ^~~~~ nps2gps.c: In function ‘LoopThroughCDSs’: nps2gps.c:1221:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 1221 | Int2 count; | ^~~~~ nps2gps.c: In function ‘NPStoGPS’: nps2gps.c:1891:39: warning: variable ‘lastmrna’ set but not used [-Wunused-but-set-variable] 1891 | SeqFeatPtr cds, gene, mrna, lastmrna, sfp, lastsfp; | ^~~~~~~~ At top level: nps2gps.c:589:17: warning: ‘MakeIdFromLocusTag’ defined but not used [-Wunused-function] 589 | static SeqIdPtr MakeIdFromLocusTag ( | ^~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o spidey -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF spideymain.c -lncbiid1 -lncbitool \ -lblastcompadj -lnetcli -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from spideymain.c:79: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/spidey.h:103, from spideymain.c:80: ../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function] 80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); | ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function] 81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function] 82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -o trna2sap -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF trna2sap.c -lncbitool -lblastcompadj \ -lncbiobj -lncbi -lm In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from trna2sap.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ trna2sap.c: In function ‘ProcessOneRecord’: trna2sap.c:290:28: warning: unused variable ‘entityID’ [-Wunused-variable] 290 | Uint2 datatype, entityID = 0; | ^~~~~~~~ trna2sap.c: In function ‘Nlm_Main’: trna2sap.c:460:12: warning: variable ‘tsp’ set but not used [-Wunused-but-set-variable] 460 | T2SPtr tsp; | ^~~ arm-linux-gnueabihf-gcc -g -o trna2tbl -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF trna2tbl.c -lncbitool -lblastcompadj \ -lncbiobj -lncbi -lm trna2tbl.c: In function ‘RunTrnaScan’: trna2tbl.c:142:13: warning: unused variable ‘str’ [-Wunused-variable] 142 | Char str [80]; | ^~~ trna2tbl.c:139:13: warning: unused variable ‘speed’ [-Wunused-variable] 139 | CharPtr speed; | ^~~~~ trna2tbl.c:127:13: warning: unused variable ‘cmmd’ [-Wunused-variable] 127 | Char cmmd [256]; | ^~~~ trna2tbl.c: At top level: trna2tbl.c:232:1: warning: return type defaults to ‘int’ [-Wimplicit-int] 232 | main (int argc, char *argv[]) | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" cn3dmain.c In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cn3dmain.c:210: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ cn3dmain.c: In function ‘OpenMimeFile’: cn3dmain.c:237:5: warning: "/*" within comment [-Wcomment] 237 | /* the Web browsers on other platforms get upset if you delete the file, */ | cn3dmain.c: In function ‘NetConfigureProc’: cn3dmain.c:267:13: warning: unused variable ‘netCurrentlyOn’ [-Wunused-variable] 267 | Boolean netCurrentlyOn = FALSE; | ^~~~~~~~~~~~~~ cn3dmain.c: In function ‘Cn3D_PrintImage’: cn3dmain.c:288:10: warning: variable ‘pmldVec’ set but not used [-Wunused-but-set-variable] 288 | PMLD pmldVec = NULL; | ^~~~~~~ cn3dmain.c:284:11: warning: unused variable ‘pdnmlFirst’ [-Wunused-variable] 284 | PDNML pdnmlFirst = NULL; | ^~~~~~~~~~ cn3dmain.c: In function ‘Nlm_Main’: cn3dmain.c:334:13: warning: unused variable ‘netCurrentlyOn’ [-Wunused-variable] 334 | Boolean netCurrentlyOn = FALSE; | ^~~~~~~~~~~~~~ At top level: cn3dmain.c:246:25: warning: ‘seqedprocs’ defined but not used [-Wunused-variable] 246 | static SeqEditViewProcs seqedprocs; | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF netentcf.c -o netentcf In file included from /usr/arm-linux-gnueabihf/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from netentcf.c:41: /usr/arm-linux-gnueabihf/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ arm-linux-gnueabihf-gcc -o Cn3D -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -L../shlib -DWIN_MOTIF cn3dmain.o -lvibnet -lncbicn3dOGL -lncbidesk \ -lddvlib -lncbimmdb -lncbiNacc -lnetentr \ -lvibrantOGL -lncbiobj -lncbi make[2]: Leaving directory '/<>/build' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' install -d debian/tmp/usr/lib/arm-linux-gnueabihf install -m 644 lib/* shlib/*.so.6.1.20170106 debian/tmp/usr/lib/arm-linux-gnueabihf for x in ncbiacc ncbiCacc netentr; do \ rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6.1.20170106 && \ ln -s libncbiNacc.so.6 \ debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6 && \ ln -s libncbiNacc.so debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so; \ done for x in ncbicn3d vibrant; do \ rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6.1.20170106 && \ ln -s lib${x}OGL.so.6 \ debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6 && \ ln -s lib${x}OGL.so debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so; \ done rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/libregexp.* cd debian/tmp/usr/lib/arm-linux-gnueabihf && \ for f in *.so.6.1.20170106; do \ base=`basename $f .so.6.1.20170106` && \ ln -s $f $base.so.6 && \ ln -s $f $base.so; \ done install -d debian/tmp/usr/include/ncbi cp -LRp include/* debian/tmp/usr/include/ncbi cd debian/tmp/usr/include/ncbi && \ rm -f FSpCompat.h FullPath.h More*.h Optimization*.h pcre*.h find debian/tmp/usr/include -type f | xargs chmod 644 install -d debian/tmp/usr/bin install `find build -type f -perm /111 -print` debian/tmp/usr/bin rm -f debian/tmp/usr/bin/*test* rm -f debian/tmp/usr/bin/*demo* rm -f debian/tmp/usr/bin/dosimple rm -f debian/tmp/usr/bin/ncbisort rm -f debian/tmp/usr/bin/cdscan rm -f debian/tmp/usr/bin/entrcmd mv debian/tmp/usr/bin/Cn3D debian/tmp/usr/bin/Cn3D-3.0 make[1]: Leaving directory '/<>' dh_install -a debian/rules override_dh_installdocs-arch make[1]: Entering directory '/<>' dh_installdocs install -m 644 config/README \ debian/libncbi6/usr/share/doc/libncbi6/README.config install -m 644 network/nsclilib/readme \ debian/libncbi6/usr/share/doc/libncbi6/README.net-cfg install -m 644 doc/fa2htgs/README \ debian/ncbi-tools-bin/usr/share/doc/ncbi-tools-bin/README.fa2htgs install -m 644 sequin/README \ debian/ncbi-tools-x11/usr/share/doc/ncbi-tools-x11/README.sequin make[1]: Leaving directory '/<>' debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs -k README make[1]: Leaving directory '/<>' dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_link # otherwise runs too late to influence debian/installman chmod +x debian/installman debian/installman ncbi-cn3d debian/installman ncbi-tools-bin debian/installman ncbi-tools-x11 dh_installman make[1]: Leaving directory '/<>' debian/rules override_dh_installmenu-arch make[1]: Entering directory '/<>' chmod +x debian/makemenu debian/makemenu debian/ncbi-cn3d.install debian/makemenu debian/ncbi-tools-x11.install dh_installmenu make[1]: Leaving directory '/<>' dh_installmime -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dwz: debian/libncbi6/usr/lib/arm-linux-gnueabihf/libncbiobj.so.6.1.20170106: DWARF compression not beneficial - old size 4697646 new size 4700966 dh_strip -a debian/rules override_dh_makeshlibs-arch make[1]: Entering directory '/<>' dh_makeshlibs -V make[1]: Leaving directory '/<>' dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol-arch make[1]: Entering directory '/<>' dh_gencontrol -pncbi-cn3d -- -v3.0.20170106+dfsg1-9 dh_gencontrol -Nncbi-cn3d make[1]: Leaving directory '/<>' dh_md5sums -a debian/rules override_dh_builddeb make[1]: Entering directory '/<>' dh_builddeb -pncbi-rrna-data -- -Zxz -z7 -Sextreme dh_builddeb: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_builddeb -Nncbi-rrna-data dpkg-deb: building package 'libncbi6' in '../libncbi6_6.1.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'libncbi6-dbgsym' in '../libncbi6-dbgsym_6.1.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'libncbi6-dev' in '../libncbi6-dev_6.1.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'ncbi-tools-bin' in '../ncbi-tools-bin_6.1.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'ncbi-tools-bin-dbgsym' in '../ncbi-tools-bin-dbgsym_6.1.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'ncbi-tools-x11' in '../ncbi-tools-x11_6.1.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'ncbi-tools-x11-dbgsym' in '../ncbi-tools-x11-dbgsym_6.1.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'ncbi-cn3d' in '../ncbi-cn3d_3.0.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'ncbi-cn3d-dbgsym' in '../ncbi-cn3d-dbgsym_3.0.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'libvibrant6b' in '../libvibrant6b_6.1.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'libvibrant6b-dbgsym' in '../libvibrant6b-dbgsym_6.1.20170106+dfsg1-9_armhf.deb'. dpkg-deb: building package 'libvibrant6-dev' in '../libvibrant6-dev_6.1.20170106+dfsg1-9_armhf.deb'. make[1]: Leaving directory '/<>' dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../ncbi-tools6_6.1.20170106+dfsg1-9_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from ncbi-tools6-6.1.20170106+dfsg1/debian/source/options: --single-debian-patch dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-04-01T01:25:32Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ncbi-tools6_6.1.20170106+dfsg1-9_armhf.changes: ----------------------------------------------- Format: 1.8 Date: Mon, 12 Oct 2020 22:08:56 -0400 Source: ncbi-tools6 Binary: libncbi6 libncbi6-dbgsym libncbi6-dev libvibrant6-dev libvibrant6b libvibrant6b-dbgsym ncbi-cn3d ncbi-cn3d-dbgsym ncbi-tools-bin ncbi-tools-bin-dbgsym ncbi-tools-x11 ncbi-tools-x11-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 6.1.20170106+dfsg1-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Aaron M. Ucko Description: libncbi6 - NCBI libraries for biology applications libncbi6-dev - NCBI libraries for biology applications (development files) libvibrant6-dev - NCBI libraries for graphic biology applications (development file libvibrant6b - NCBI libraries for graphic biology applications ncbi-cn3d - 3-dimensional viewer for biological molecules ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities) ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities) Changes: ncbi-tools6 (6.1.20170106+dfsg1-9) unstable; urgency=medium . [ Andreas Tille ] * debian/upstream/metadata: Fix typo. . [ Aaron M. Ucko ] * Trim trailing whitespace. * debian/copyright: - Use spaces rather than tabs to start continuation lines. - Clean up spurious trailing content on Files: lines. (Several somehow wound up with trailing colons, and one had a parenthesized comment, which the spec doesn't allow.) - Correct the spelling of "downloaded." * Use secure URIs in Homepage field and debian/watch. * Bump debhelper from old 11 to 12. * Set debhelper-compat version in Build-Depends. * Move development files usable with libvibgif.so.6 to libncbi6-dev from libvibrant6-dev; set Breaks/Replaces accordingly. (The runtime library has long been in libncbi6, since it adds no extra dependencies.) * debian/*.symbols: Use Build-Depends-Package, missed earlier. * debian/ncbi-cn3d.{postinst,prerm}: Supply -e via set, per best practice. * Update Lintian overrides: drop overrides associated with former .menu files, and go ahead and override custom-compression-in-debian-rules for the ncbi-rrna-data binary package, which is architecture-independent and benefits from tuning. * debian/rules: Use pkg-info.mk rather than raw dpkg-parsechangelog. 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8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), csh (= 20110502-6), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.76), debhelper (= 13.3.4), debianutils (= 4.11.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.11.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.7.1), dpkg-dev (= 1.20.7.1), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), fontconfig-config (= 2.13.1-4.2), fonts-dejavu-core (= 2.37-2), g++ (= 4:10.2.1-1), g++-10 (= 10.2.1-6), gcc (= 4:10.2.1-1), gcc-10 (= 10.2.1-6), gcc-10-base (= 10.2.1-6), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-6), libatomic1 (= 10.2.1-6), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0-2), libaudit1 (= 1:3.0-2), libbinutils (= 2.35.2-2), libblkid1 (= 2.36.1-7), libbrotli-dev (= 1.0.9-2+b2), libbrotli1 (= 1.0.9-2+b2), libbsd0 (= 0.11.3-1), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-10), libc-dev-bin (= 2.31-10), libc6 (= 2.31-10), libc6-dev (= 2.31-10), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.1-6), libcom-err2 (= 1.46.2-1), libcrypt-dev (= 1:4.4.18-2), libcrypt1 (= 1:4.4.18-2), libctf-nobfd0 (= 2.35.2-2), libctf0 (= 2.35.2-2), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.257), libdebhelper-perl (= 13.3.4), libdpkg-perl (= 1.20.7.1), libdrm-amdgpu1 (= 2.4.104-1), libdrm-common (= 2.4.104-1), libdrm-nouveau2 (= 2.4.104-1), libdrm-radeon1 (= 2.4.104-1), libdrm2 (= 2.4.104-1), libedit2 (= 3.1-20191231-2+b1), libegl-dev (= 1.3.2-1), libegl-mesa0 (= 20.3.5-1), libegl1 (= 1.3.2-1), libelf1 (= 0.183-3), libevent-2.1-7 (= 2.1.12-stable-1), libexpat1 (= 2.2.10-2), libexpat1-dev (= 2.2.10-2), libffi7 (= 3.3-6), libfile-stripnondeterminism-perl (= 1.11.0-1), libfontconfig-dev (= 2.13.1-4.2), libfontconfig1 (= 2.13.1-4.2), libfontconfig1-dev (= 2.13.1-4.2), libfreetype-dev (= 2.10.4+dfsg-1), libfreetype6 (= 2.10.4+dfsg-1), libfreetype6-dev (= 2.10.4+dfsg-1), libgbm1 (= 20.3.5-1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 10.2.1-6), libgcrypt20 (= 1.8.7-3), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgl-dev (= 1.3.2-1), libgl1 (= 1.3.2-1), libgl1-mesa-dev (= 20.3.5-1), libgl1-mesa-dri (= 20.3.5-1), libglapi-mesa (= 20.3.5-1), libgles-dev (= 1.3.2-1), libgles1 (= 1.3.2-1), libgles2 (= 1.3.2-1), libglib2.0-0 (= 2.66.8-1), libglu1-mesa (= 9.0.1-1), libglu1-mesa-dev (= 9.0.1-1), libglvnd-dev (= 1.3.2-1), libglvnd0 (= 1.3.2-1), libglx-dev (= 1.3.2-1), libglx-mesa0 (= 20.3.5-1), libglx0 (= 1.3.2-1), libgmp-dev (= 2:6.2.1+dfsg-1), libgmp10 (= 2:6.2.1+dfsg-1), libgmpxx4ldbl (= 2:6.2.1+dfsg-1), libgnutls-dane0 (= 3.7.1-3), libgnutls-openssl27 (= 3.7.1-3), libgnutls28-dev (= 3.7.1-3), libgnutls30 (= 3.7.1-3), libgnutlsxx28 (= 3.7.1-3), libgomp1 (= 10.2.1-6), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libhogweed6 (= 3.7-2.1), libice-dev (= 2:1.0.10-1), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-6), libidn2-0 (= 2.3.0-5), libidn2-dev (= 2.3.0-5), libisl23 (= 0.23-1), libitm1 (= 10.2.1-6), libjpeg62-turbo (= 1:2.0.6-4), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), libllvm11 (= 1:11.0.1-2), liblsan0 (= 10.2.1-6), liblz4-1 (= 1.9.3-1), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmd0 (= 1.0.3-3), libmotif-common (= 2.3.8-3), libmotif-dev (= 2.3.8-3), libmount1 (= 2.36.1-7), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libmrm4 (= 2.3.8-3), libnettle8 (= 3.7-2.1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libopengl-dev (= 1.3.2-1), libopengl0 (= 1.3.2-1), libp11-kit-dev (= 0.23.22-1), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-7), libpam-modules-bin (= 1.4.0-7), libpam-runtime (= 1.4.0-7), libpam0g (= 1.4.0-7), libpcre16-3 (= 2:8.39-13), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libpcre3-dev (= 2:8.39-13), libpcre32-3 (= 2:8.39-13), libpcrecpp0v5 (= 2:8.39-13), libperl5.32 (= 5.32.1-3), libpipeline1 (= 1.5.3-1), libpng-dev (= 1.6.37-3), libpng16-16 (= 1.6.37-3), libpthread-stubs0-dev (= 0.4-1), libquadmath0 (= 10.2.1-6), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libsensors-config (= 1:3.6.0-7), libsensors5 (= 1:3.6.0-7), libsigsegv2 (= 2.13-1), libsm-dev (= 2:1.2.3-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36.1-7), libssl1.1 (= 1.1.1k-1), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 10.2.1-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.3-3), libtasn1-6 (= 4.16.0-2), libtasn1-6-dev (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-15), libtsan0 (= 10.2.1-6), libubsan1 (= 10.2.1-6), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-3), libuil4 (= 2.3.8-3), libunbound8 (= 1.13.1-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-7), libvulkan1 (= 1.2.162.0-1), libwayland-client0 (= 1.19.0-2), libwayland-server0 (= 1.19.0-2), libx11-6 (= 2:1.7.0-2), libx11-data (= 2:1.7.0-2), libx11-dev (= 2:1.7.0-2), libx11-xcb1 (= 2:1.7.0-2), libxau-dev (= 1:1.0.9-1), libxau6 (= 1:1.0.9-1), libxcb-dri2-0 (= 1.14-3), libxcb-dri3-0 (= 1.14-3), libxcb-glx0 (= 1.14-3), libxcb-present0 (= 1.14-3), libxcb-shm0 (= 1.14-3), libxcb-sync1 (= 1.14-3), libxcb-xfixes0 (= 1.14-3), libxcb1 (= 1.14-3), libxcb1-dev (= 1.14-3), libxdamage1 (= 1:1.1.5-2), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.3-1.1), libxext6 (= 2:1.3.3-1.1), libxfixes3 (= 1:5.0.3-2), libxft-dev (= 2.3.2-2), libxft2 (= 2.3.2-2), libxm4 (= 2.3.8-3), libxml2 (= 2.9.10+dfsg-6.3+b1), libxmu-dev (= 2:1.1.2-2+b3), libxmu-headers (= 2:1.1.2-2), libxmu6 (= 2:1.1.2-2+b3), libxrender-dev (= 1:0.9.10-1), libxrender1 (= 1:0.9.10-1), libxshmfence1 (= 1.3-1), libxt-dev (= 1:1.2.0-1), libxt6 (= 1:1.2.0-1), libxxf86vm1 (= 1:1.1.4-1+b2), libz3-4 (= 4.8.10-1), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.26-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), nettle-dev (= 3.7-2.1), patch (= 2.7.6-7), perl (= 5.32.1-3), perl-base (= 5.32.1-3), perl-modules-5.32 (= 5.32.1-3), pkg-config (= 0.29.2-1), po-debconf (= 1.0.21+nmu1), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-6), tar (= 1.34+dfsg-1), ucf (= 3.0043), uil (= 2.3.8-3), util-linux (= 2.36.1-7), uuid-dev (= 2.36.1-7), x11-common (= 1:7.7+22), x11proto-dev (= 2020.1-1), x11proto-xext-dev (= 2020.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1602554936" +------------------------------------------------------------------------------+ | Package contents 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lrwxrwxrwx root/root 0 2020-10-13 02:08 ./usr/share/doc/libncbi6-dbgsym -> libncbi6 libncbi6-dev_6.1.20170106+dfsg1-9_armhf.deb ------------------------------------------- new Debian package, version 2.0. size 4968284 bytes: control archive=13140 bytes. 690 bytes, 18 lines control 35666 bytes, 529 lines md5sums Package: libncbi6-dev Source: ncbi-tools6 Version: 6.1.20170106+dfsg1-9 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 17710 Depends: libncbi6 (= 6.1.20170106+dfsg1-9) Recommends: ncbi-tools-bin Breaks: libvibrant6-dev (<< 6.1.20170106-9~) Replaces: libvibrant6-dev (<< 6.1.20170106-9~) Provides: ncbi-tools-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications (development files) This package supplies development versions of NCBI's non-graphical C libraries, along with the corresponding header files. drwxr-xr-x root/root 0 2020-10-13 02:08 ./ 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Maintainer: Debian Med Packaging Team Installed-Size: 8459 Depends: ncbi-data (= 6.1.20170106+dfsg1-9), libc6 (>= 2.29), libgnutls30 (>= 3.7.0) Section: libs Priority: optional Multi-Arch: same Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications The NCBI Software Development Toolkit was developed for the production and distribution of GenBank, Entrez, BLAST, and related services by NCBI. 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91916 bytes, 2474 lines symbols 67 bytes, 2 lines triggers Package: libvibrant6b Source: ncbi-tools6 Version: 6.1.20170106+dfsg1-9 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 2217 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libc6 (>= 2.29), libgl1, libglu1-mesa | libglu1, libpng16-16 (>= 1.6.2-1), libx11-6, libxm4 (>= 2.3.4), libxmu6, libxt6 Recommends: sensible-utils Conflicts: libvibrant6, libvibrant6a Replaces: libvibrant6, libvibrant6a Section: libs Priority: optional Multi-Arch: same Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for graphic biology applications This is the library for those who just want to run Vibrant applications. It also includes a wrapper (vibrate) that allows many NCBI applications to provide a GUI for selecting options. drwxr-xr-x root/root 0 2020-10-13 02:08 ./ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2020-10-13 02:08 ./usr/lib/arm-linux-gnueabihf/libddvlib.so.6 -> libddvlib.so.6.1.20170106 -rw-r--r-- root/root 71308 2020-10-13 02:08 ./usr/lib/arm-linux-gnueabihf/libddvlib.so.6.1.20170106 lrwxrwxrwx root/root 0 2020-10-13 02:08 ./usr/lib/arm-linux-gnueabihf/libncbicn3d.so.6 -> libncbicn3dOGL.so.6 lrwxrwxrwx root/root 0 2020-10-13 02:08 ./usr/lib/arm-linux-gnueabihf/libncbicn3dOGL.so.6 -> libncbicn3dOGL.so.6.1.20170106 -rw-r--r-- root/root 117192 2020-10-13 02:08 ./usr/lib/arm-linux-gnueabihf/libncbicn3dOGL.so.6.1.20170106 lrwxrwxrwx root/root 0 2020-10-13 02:08 ./usr/lib/arm-linux-gnueabihf/libncbidesk.so.6 -> libncbidesk.so.6.1.20170106 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changelog.gz -rw-r--r-- root/root 18643 2020-10-13 02:08 ./usr/share/doc/libvibrant6b/changelog.Debian.gz -rw-r--r-- root/root 18160 2019-07-29 01:01 ./usr/share/doc/libvibrant6b/changelog.gz -rw-r--r-- root/root 10311 2020-10-12 23:46 ./usr/share/doc/libvibrant6b/copyright drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 48 2019-08-04 03:05 ./usr/share/lintian/overrides/libvibrant6b ncbi-cn3d-dbgsym_3.0.20170106+dfsg1-9_armhf.deb ----------------------------------------------- new Debian package, version 2.0. size 14780 bytes: control archive=556 bytes. 428 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: ncbi-cn3d-dbgsym Source: ncbi-tools6 (6.1.20170106+dfsg1-9) Version: 3.0.20170106+dfsg1-9 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 28 Depends: ncbi-cn3d (= 3.0.20170106+dfsg1-9) Section: debug Priority: optional Description: debug symbols for ncbi-cn3d Build-Ids: a5d9e516e4f3302039671b6e1480a4533dd65d25 drwxr-xr-x root/root 0 2020-10-13 02:08 ./ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/lib/debug/.build-id/a5/ -rw-r--r-- root/root 18272 2020-10-13 02:08 ./usr/lib/debug/.build-id/a5/d9e516e4f3302039671b6e1480a4533dd65d25.debug drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/share/ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-10-13 02:08 ./usr/share/doc/ncbi-cn3d-dbgsym -> ncbi-cn3d ncbi-cn3d_3.0.20170106+dfsg1-9_armhf.deb ---------------------------------------- new Debian package, version 2.0. size 47312 bytes: control archive=1096 bytes. 837 bytes, 17 lines control 548 bytes, 8 lines md5sums 198 bytes, 9 lines * postinst #!/bin/sh 72 bytes, 6 lines * prerm #!/bin/sh Package: ncbi-cn3d Source: ncbi-tools6 (6.1.20170106+dfsg1-9) Version: 3.0.20170106+dfsg1-9 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 78 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libvibrant6b (<< 6.1.20170106+dfsg1.1), libvibrant6b (>= 6.1.20170106+dfsg1), libc6 (>= 2.4) Suggests: ncbi-tools-bin, ncbi-tools-x11 Breaks: ncbi-tools-x11 (<< 6.1.20170106+dfsg1-5~) Replaces: ncbi-tools-x11 (<< 6.1.20170106+dfsg1-5~) Section: science Priority: optional Multi-Arch: foreign Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: 3-dimensional viewer for biological molecules Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez retrieval service. drwxr-xr-x root/root 0 2020-10-13 02:08 ./ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/ drwxr-xr-x root/root 0 2020-10-13 02:08 ./usr/bin/ -rwxr-xr-x root/root 9636 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new Debian package, version 2.0. size 1857564 bytes: control archive=3384 bytes. 1022 bytes, 21 lines control 6559 bytes, 100 lines md5sums Package: ncbi-tools-bin Source: ncbi-tools6 Version: 6.1.20170106+dfsg1-9 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 2807 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libc6 (>= 2.29) Suggests: libvibrant6b, ncbi-blast+, ncbi-cn3d, ncbi-tools-x11 Breaks: blast2 (<< 1:2.2.26.20160908) Replaces: blast2 (<< 1:2.2.26.20160908) Section: science Priority: optional Multi-Arch: foreign Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Description: NCBI libraries for biology applications (text-based utilities) This package includes various utilities distributed with the NCBI C SDK, including the development tools asntool and errhdr (formerly of libncbi6-dev). 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The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-1 [73.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.4-1 [51.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-1 [547 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-1 [927 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.26-1 [16.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.25-1+b1 [129 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4+b1 [38.8 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012001-2 [351 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-3 [88.5 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7626 kB in 0s (27.4 MB/s) Selecting previously unselected package readline-common. (Reading database ... 24483 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.4-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.4-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.27-1_amd64.deb ... Unpacking gpgconf (2.2.27-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package gpg. Preparing to unpack .../06-gpg_2.2.27-1_amd64.deb ... Unpacking gpg (2.2.27-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../07-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.40_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b3_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../10-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../11-libdevel-callchecker-perl_0.008-1+b2_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b2) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../12-libparams-classify-perl_0.015-1+b3_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../13-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../14-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../15-libmodule-implementation-perl_0.09-1.1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1.1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../16-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../17-libvariable-magic-perl_0.62-1+b3_amd64.deb ... Unpacking libvariable-magic-perl (0.62-1+b3) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../18-libb-hooks-endofscope-perl_0.24-1.1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.24-1.1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../19-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../20-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../21-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../22-libclass-xsaccessor-perl_1.19-3+b7_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b7) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../23-libclone-perl_0.45-1+b1_amd64.deb ... Unpacking libclone-perl (0.45-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../24-libconfig-tiny-perl_2.26-1_all.deb ... Unpacking libconfig-tiny-perl (2.26-1) ... Selecting previously unselected package libcpanel-json-xs-perl. Preparing to unpack .../25-libcpanel-json-xs-perl_4.25-1+b1_amd64.deb ... Unpacking libcpanel-json-xs-perl (4.25-1+b1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../26-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../27-libexception-class-perl_1.44-1_all.deb ... Unpacking libexception-class-perl (1.44-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../28-libiterator-perl_0.03+ds1-1.1_all.deb ... Unpacking libiterator-perl (0.03+ds1-1.1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../29-libiterator-util-perl_0.02+ds1-1.1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1.1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../30-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../31-liblist-moreutils-xs-perl_0.430-2_amd64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../32-liblist-moreutils-perl_0.430-2_all.deb ... Unpacking liblist-moreutils-perl (0.430-2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../33-libparams-util-perl_1.102-1+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-1+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../34-libsub-install-perl_0.928-1.1_all.deb ... Unpacking libsub-install-perl (0.928-1.1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../35-libdata-optlist-perl_0.110-1.1_all.deb ... Unpacking libdata-optlist-perl (0.110-1.1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../36-libsub-exporter-perl_0.987-1_all.deb ... Unpacking libsub-exporter-perl (0.987-1) ... Selecting previously unselected package libdata-dpath-perl. Preparing to unpack .../37-libdata-dpath-perl_0.58-1_all.deb ... Unpacking libdata-dpath-perl (0.58-1) ... Selecting previously unselected package libdata-messagepack-perl. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 959604 Build-Time: 1158 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 48 Job: ncbi-tools6_6.1.20170106+dfsg1-9 Lintian: pass Machine Architecture: amd64 Package: ncbi-tools6 Package-Time: 1225 Source-Version: 6.1.20170106+dfsg1-9 Space: 959604 Status: successful Version: 6.1.20170106+dfsg1-9 -------------------------------------------------------------------------------- Finished at 2021-04-01T01:25:32Z Build needed 00:20:25, 959604k disk space