sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir

+==============================================================================+
| ncbi-tools6 6.1.20170106+dfsg1-9 (i386)      Sun, 26 Sep 2021 06:03:26 +0000 |
+==============================================================================+

Package: ncbi-tools6
Version: 6.1.20170106+dfsg1-9
Source Version: 6.1.20170106+dfsg1-9
Distribution: unstable
Machine Architecture: arm64
Host Architecture: i386
Build Architecture: arm64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-021d25a3-af40-4458-8e2d-93fbf37cc389' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/ncbi-tools6-xgNQwN/resolver-EBExwL' with '<<RESOLVERDIR>>'

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| Update chroot                                                                |
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Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8643 kB]
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| Fetch source files                                                           |
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Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'ncbi-tools6' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ncbi-tools6.git
Please use:
git clone https://salsa.debian.org/med-team/ncbi-tools6.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 59.8 MB of source archives.
Get:1 http://mirror.einval.org/debian sid/main ncbi-tools6 6.1.20170106+dfsg1-9 (dsc) [2757 B]
Get:2 http://mirror.einval.org/debian sid/main ncbi-tools6 6.1.20170106+dfsg1-9 (tar) [58.3 MB]
Get:3 http://mirror.einval.org/debian sid/main ncbi-tools6 6.1.20170106+dfsg1-9 (diff) [1513 kB]
Fetched 59.8 MB in 1s (56.3 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ncbi-tools6-xgNQwN/ncbi-tools6-6.1.20170106+dfsg1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ncbi-tools6-xgNQwN' with '<<BUILDDIR>>'

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| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386, csh | c-shell, libglu1-mesa-dev | libglu-dev, libgnutls28-dev | gnutls-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
Filtered Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386, csh, libglu1-mesa-dev, libgnutls28-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-i686-linux-gnu
  bsdextrautils cpp-10-i686-linux-gnu cpp-i686-linux-gnu cross-config
  crossbuild-essential-i386 csh debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dwz file fontconfig-config
  fonts-dejavu-core g++-10-i686-linux-gnu g++-i686-linux-gnu gcc-10-base:i386
  gcc-10-cross-base gcc-10-i686-linux-gnu gcc-10-i686-linux-gnu-base
  gcc-11-base:i386 gcc-11-cross-base gcc-i686-linux-gnu gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libasan6:i386
  libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli-dev:i386
  libbrotli1 libbrotli1:i386 libbsd0 libbsd0:i386 libc6:i386 libc6-dev:i386
  libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl
  libdebian-dpkgcross-perl libdrm-amdgpu1:i386 libdrm-common
  libdrm-intel1:i386 libdrm-nouveau2:i386 libdrm-radeon1:i386 libdrm2:i386
  libedit2:i386 libegl-dev:i386 libegl-mesa0:i386 libegl1:i386 libelf1
  libelf1:i386 libevent-2.1-7:i386 libexpat1 libexpat1:i386 libexpat1-dev:i386
  libffi7:i386 libffi8:i386 libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:i386
  libfontconfig1 libfontconfig1:i386 libfontconfig1-dev:i386
  libfreetype-dev:i386 libfreetype6 libfreetype6:i386 libfreetype6-dev:i386
  libgbm1:i386 libgcc-10-dev:i386 libgcc-10-dev-i386-cross libgcc-s1:i386
  libgcc-s1-i386-cross libgl-dev:i386 libgl1:i386 libgl1-mesa-dev:i386
  libgl1-mesa-dri:i386 libglapi-mesa:i386 libgles-dev:i386 libgles1:i386
  libgles2:i386 libglib2.0-0 libglu1-mesa:i386 libglu1-mesa-dev:i386
  libglvnd-core-dev:i386 libglvnd-dev:i386 libglvnd0:i386 libglx-dev:i386
  libglx-mesa0:i386 libglx0:i386 libgmp-dev:i386 libgmp10:i386
  libgmpxx4ldbl:i386 libgnutls-dane0:i386 libgnutls-openssl27:i386
  libgnutls28-dev:i386 libgnutls30:i386 libgnutlsxx28:i386 libgomp1:i386
  libgomp1-i386-cross libgssapi-krb5-2:i386 libhogweed6:i386 libice-dev:i386
  libice6 libice6:i386 libicu67 libicu67:i386 libidn2-0:i386 libidn2-dev:i386
  libio-string-perl libitm1:i386 libitm1-i386-cross libjpeg62-turbo
  libjpeg62-turbo:i386 libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386
  libkrb5support0:i386 libllvm12:i386 liblocale-gettext-perl liblzma5:i386
  libmagic-mgc libmagic1 libmd0 libmd0:i386 libmotif-common libmotif-dev:i386
  libmrm4 libmrm4:i386 libnettle8:i386 libnsl-dev:i386 libnsl2:i386
  libopengl-dev:i386 libopengl0:i386 libp11-kit-dev:i386 libp11-kit0:i386
  libpciaccess0:i386 libpcre16-3:i386 libpcre3:i386 libpcre3-dev:i386
  libpcre32-3:i386 libpcrecpp0v5:i386 libpipeline1 libpng-dev:i386 libpng16-16
  libpng16-16:i386 libpthread-stubs0-dev libpthread-stubs0-dev:i386
  libquadmath0:i386 libquadmath0-i386-cross libsensors-config libsensors5:i386
  libsigsegv2 libsm-dev:i386 libsm6 libsm6:i386 libssl1.1:i386
  libstdc++-10-dev:i386 libstdc++-10-dev-i386-cross libstdc++6:i386
  libstdc++6-i386-cross libsub-override-perl libtasn1-6:i386
  libtasn1-6-dev:i386 libtinfo6:i386 libtirpc-dev:i386 libtirpc3:i386 libtool
  libubsan1:i386 libubsan1-i386-cross libuchardet0 libuil4 libuil4:i386
  libunbound8:i386 libunistring2:i386 libuuid1:i386 libvulkan1:i386
  libwayland-client0:i386 libwayland-server0:i386 libx11-6 libx11-6:i386
  libx11-data libx11-dev libx11-dev:i386 libx11-xcb1:i386 libxau-dev
  libxau-dev:i386 libxau6 libxau6:i386 libxcb-dri2-0:i386 libxcb-dri3-0:i386
  libxcb-glx0:i386 libxcb-present0:i386 libxcb-shm0:i386 libxcb-sync1:i386
  libxcb-xfixes0:i386 libxcb1 libxcb1:i386 libxcb1-dev libxcb1-dev:i386
  libxdmcp-dev libxdmcp-dev:i386 libxdmcp6 libxdmcp6:i386 libxext-dev:i386
  libxext6 libxext6:i386 libxfixes3:i386 libxft-dev:i386 libxft2 libxft2:i386
  libxm4 libxm4:i386 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:i386
  libxmu-dev:i386 libxmu-headers libxmu6 libxmu6:i386 libxrender-dev:i386
  libxrender1 libxrender1:i386 libxshmfence1:i386 libxt-dev:i386 libxt6
  libxt6:i386 libxxf86vm1:i386 libyaml-perl libz3-4:i386 libzstd1:i386
  linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db nettle-dev:i386
  pkg-config po-debconf sensible-utils ucf uil uuid-dev:i386 x11-common
  x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:i386 zlib1g-dev:i386
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales
  cpp-doc dh-make binutils-multiarch g++-10-multilib-i686-linux-gnu gcc-10-doc
  gcc-10-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu
  gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386
  libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386
  manpages-dev:i386 freetype2-doc:i386 gmp-doc:i386 libgmp10-doc:i386
  libmpfr-dev:i386 dns-root-data:i386 gnutls-bin:i386 gnutls-doc:i386
  krb5-doc:i386 krb5-user:i386 libice-doc:i386 pciutils:i386 lm-sensors
  lm-sensors:i386 libsm-doc:i386 libstdc++-10-doc:i386 libtool-doc gfortran
  | fortran95-compiler gcj-jdk libx11-doc libx11-doc:i386 libxcb-doc
  libxcb-doc:i386 libxext-doc:i386 libxt-doc:i386 libyaml-shell-perl m4-doc
  apparmor less www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs krb5-locales:i386 libpng-tools:i386 libtasn1-doc:i386
  libltdl-dev uuid-runtime:i386 mesa-vulkan-drivers:i386 | vulkan-icd:i386
  libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-i686-linux-gnu
  bsdextrautils cpp-10-i686-linux-gnu cpp-i686-linux-gnu cross-config
  crossbuild-essential-i386 csh debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dwz file fontconfig-config
  fonts-dejavu-core g++-10-i686-linux-gnu g++-i686-linux-gnu gcc-10-base:i386
  gcc-10-cross-base gcc-10-i686-linux-gnu gcc-10-i686-linux-gnu-base
  gcc-11-base:i386 gcc-11-cross-base gcc-i686-linux-gnu gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libasan6:i386
  libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli-dev:i386
  libbrotli1 libbrotli1:i386 libbsd0 libbsd0:i386 libc6:i386 libc6-dev:i386
  libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl
  libdebian-dpkgcross-perl libdrm-amdgpu1:i386 libdrm-common
  libdrm-intel1:i386 libdrm-nouveau2:i386 libdrm-radeon1:i386 libdrm2:i386
  libedit2:i386 libegl-dev:i386 libegl-mesa0:i386 libegl1:i386 libelf1
  libelf1:i386 libevent-2.1-7:i386 libexpat1 libexpat1:i386 libexpat1-dev:i386
  libffi7:i386 libffi8:i386 libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig-dev:i386
  libfontconfig1 libfontconfig1:i386 libfontconfig1-dev:i386
  libfreetype-dev:i386 libfreetype6 libfreetype6:i386 libfreetype6-dev:i386
  libgbm1:i386 libgcc-10-dev:i386 libgcc-10-dev-i386-cross libgcc-s1:i386
  libgcc-s1-i386-cross libgl-dev:i386 libgl1:i386 libgl1-mesa-dev:i386
  libgl1-mesa-dri:i386 libglapi-mesa:i386 libgles-dev:i386 libgles1:i386
  libgles2:i386 libglib2.0-0 libglu1-mesa:i386 libglu1-mesa-dev:i386
  libglvnd-core-dev:i386 libglvnd-dev:i386 libglvnd0:i386 libglx-dev:i386
  libglx-mesa0:i386 libglx0:i386 libgmp-dev:i386 libgmp10:i386
  libgmpxx4ldbl:i386 libgnutls-dane0:i386 libgnutls-openssl27:i386
  libgnutls28-dev:i386 libgnutls30:i386 libgnutlsxx28:i386 libgomp1:i386
  libgomp1-i386-cross libgssapi-krb5-2:i386 libhogweed6:i386 libice-dev:i386
  libice6 libice6:i386 libicu67 libicu67:i386 libidn2-0:i386 libidn2-dev:i386
  libio-string-perl libitm1:i386 libitm1-i386-cross libjpeg62-turbo
  libjpeg62-turbo:i386 libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386
  libkrb5support0:i386 libllvm12:i386 liblocale-gettext-perl liblzma5:i386
  libmagic-mgc libmagic1 libmd0 libmd0:i386 libmotif-common libmotif-dev:i386
  libmrm4 libmrm4:i386 libnettle8:i386 libnsl-dev:i386 libnsl2:i386
  libopengl-dev:i386 libopengl0:i386 libp11-kit-dev:i386 libp11-kit0:i386
  libpciaccess0:i386 libpcre16-3:i386 libpcre3:i386 libpcre3-dev:i386
  libpcre32-3:i386 libpcrecpp0v5:i386 libpipeline1 libpng-dev:i386 libpng16-16
  libpng16-16:i386 libpthread-stubs0-dev libpthread-stubs0-dev:i386
  libquadmath0:i386 libquadmath0-i386-cross libsensors-config libsensors5:i386
  libsigsegv2 libsm-dev:i386 libsm6 libsm6:i386 libssl1.1:i386
  libstdc++-10-dev:i386 libstdc++-10-dev-i386-cross libstdc++6:i386
  libstdc++6-i386-cross libsub-override-perl libtasn1-6:i386
  libtasn1-6-dev:i386 libtinfo6:i386 libtirpc-dev:i386 libtirpc3:i386 libtool
  libubsan1:i386 libubsan1-i386-cross libuchardet0 libuil4 libuil4:i386
  libunbound8:i386 libunistring2:i386 libuuid1:i386 libvulkan1:i386
  libwayland-client0:i386 libwayland-server0:i386 libx11-6 libx11-6:i386
  libx11-data libx11-dev libx11-dev:i386 libx11-xcb1:i386 libxau-dev
  libxau-dev:i386 libxau6 libxau6:i386 libxcb-dri2-0:i386 libxcb-dri3-0:i386
  libxcb-glx0:i386 libxcb-present0:i386 libxcb-shm0:i386 libxcb-sync1:i386
  libxcb-xfixes0:i386 libxcb1 libxcb1:i386 libxcb1-dev libxcb1-dev:i386
  libxdmcp-dev libxdmcp-dev:i386 libxdmcp6 libxdmcp6:i386 libxext-dev:i386
  libxext6 libxext6:i386 libxfixes3:i386 libxft-dev:i386 libxft2 libxft2:i386
  libxm4 libxm4:i386 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:i386
  libxmu-dev:i386 libxmu-headers libxmu6 libxmu6:i386 libxrender-dev:i386
  libxrender1 libxrender1:i386 libxshmfence1:i386 libxt-dev:i386 libxt6
  libxt6:i386 libxxf86vm1:i386 libyaml-perl libz3-4:i386 libzstd1:i386
  linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db nettle-dev:i386
  pkg-config po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils
  ucf uil uuid-dev:i386 x11-common x11proto-dev xorg-sgml-doctools xtrans-dev
  zlib1g:i386 zlib1g-dev:i386
0 upgraded, 267 newly installed, 0 to remove and 0 not upgraded.
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Get:4 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-7 [883 kB]
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Get:12 http://mirror.einval.org/debian sid/main i386 libdrm-amdgpu1 i386 2.4.107-6 [32.1 kB]
Get:13 http://mirror.einval.org/debian sid/main i386 zlib1g i386 1:1.2.11.dfsg-2 [93.1 kB]
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Get:18 http://mirror.einval.org/debian sid/main i386 libelf1 i386 0.185-2 [178 kB]
Get:19 http://mirror.einval.org/debian sid/main i386 libexpat1 i386 2.4.1-2+b1 [105 kB]
Get:20 http://mirror.einval.org/debian sid/main i386 libglapi-mesa i386 21.2.2-1 [74.6 kB]
Get:21 http://mirror.einval.org/debian sid/main i386 libatomic1 i386 11.2.0-8 [7720 B]
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Get:24 http://mirror.einval.org/debian sid/main i386 libtinfo6 i386 6.2+20210905-1 [349 kB]
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Get:30 http://mirror.einval.org/debian sid/main i386 libxml2 i386 2.9.12+dfsg-5 [730 kB]
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Get:32 http://mirror.einval.org/debian sid/main i386 libllvm12 i386 1:12.0.1-9 [19.4 MB]
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Get:35 http://mirror.einval.org/debian sid/main i386 libvulkan1 i386 1.2.189.0-2 [112 kB]
Get:36 http://mirror.einval.org/debian sid/main i386 libzstd1 i386 1.4.8+dfsg-2.1 [308 kB]
Get:37 http://mirror.einval.org/debian sid/main i386 libgl1-mesa-dri i386 21.2.2-1 [10.6 MB]
Get:38 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB]
Get:39 http://mirror.einval.org/debian sid/main arm64 x11-common all 1:7.7+23 [252 kB]
Get:40 http://mirror.einval.org/debian sid/main arm64 libmotif-common all 2.3.8-3 [40.5 kB]
Get:41 http://mirror.einval.org/debian sid/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get:42 http://mirror.einval.org/debian sid/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get:43 http://mirror.einval.org/debian sid/main i386 libxcb1 i386 1.14-3 [144 kB]
Get:44 http://mirror.einval.org/debian sid/main arm64 libx11-data all 2:1.7.2-2 [311 kB]
Get:45 http://mirror.einval.org/debian sid/main i386 libx11-6 i386 2:1.7.2-2+b1 [797 kB]
Get:46 http://mirror.einval.org/debian sid/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB]
Get:47 http://mirror.einval.org/debian sid/main i386 libpng16-16 i386 1.6.37-3 [303 kB]
Get:48 http://mirror.einval.org/debian sid/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB]
Get:49 http://mirror.einval.org/debian sid/main i386 libuuid1 i386 2.37.2-3 [85.3 kB]
Get:50 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB]
Get:51 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB]
Get:52 http://mirror.einval.org/debian sid/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB]
Get:53 http://mirror.einval.org/debian sid/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB]
Get:54 http://mirror.einval.org/debian sid/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB]
Get:55 http://mirror.einval.org/debian sid/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB]
Get:56 http://mirror.einval.org/debian sid/main i386 libxext6 i386 2:1.3.4-1 [55.4 kB]
Get:57 http://mirror.einval.org/debian sid/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB]
Get:58 http://mirror.einval.org/debian sid/main i386 libxft2 i386 2.3.2-2 [58.2 kB]
Get:59 http://mirror.einval.org/debian sid/main i386 libice6 i386 2:1.0.10-1 [60.8 kB]
Get:60 http://mirror.einval.org/debian sid/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB]
Get:61 http://mirror.einval.org/debian sid/main i386 libxt6 i386 1:1.2.0-1 [195 kB]
Get:62 http://mirror.einval.org/debian sid/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB]
Get:63 http://mirror.einval.org/debian sid/main i386 libxm4 i386 2.3.8-3 [1098 kB]
Get:64 http://mirror.einval.org/debian sid/main i386 libmrm4 i386 2.3.8-3 [92.9 kB]
Get:65 http://mirror.einval.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB]
Get:66 http://mirror.einval.org/debian sid/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB]
Get:67 http://mirror.einval.org/debian sid/main arm64 libbsd0 arm64 0.11.3-1 [106 kB]
Get:68 http://mirror.einval.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB]
Get:69 http://mirror.einval.org/debian sid/main arm64 libxcb1 arm64 1.14-3 [138 kB]
Get:70 http://mirror.einval.org/debian sid/main arm64 libx11-6 arm64 2:1.7.2-2+b1 [751 kB]
Get:71 http://mirror.einval.org/debian sid/main arm64 libexpat1 arm64 2.4.1-2+b1 [90.3 kB]
Get:72 http://mirror.einval.org/debian sid/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB]
Get:73 http://mirror.einval.org/debian sid/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB]
Get:74 http://mirror.einval.org/debian sid/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB]
Get:75 http://mirror.einval.org/debian sid/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB]
Get:76 http://mirror.einval.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB]
Get:77 http://mirror.einval.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1 [51.6 kB]
Get:78 http://mirror.einval.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB]
Get:79 http://mirror.einval.org/debian sid/main arm64 libxft2 arm64 2.3.2-2 [51.3 kB]
Get:80 http://mirror.einval.org/debian sid/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB]
Get:81 http://mirror.einval.org/debian sid/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB]
Get:82 http://mirror.einval.org/debian sid/main arm64 libxt6 arm64 1:1.2.0-1 [176 kB]
Get:83 http://mirror.einval.org/debian sid/main arm64 libxmu6 arm64 2:1.1.2-2+b3 [57.8 kB]
Get:84 http://mirror.einval.org/debian sid/main arm64 libxm4 arm64 2.3.8-3 [930 kB]
Get:85 http://mirror.einval.org/debian sid/main arm64 libmrm4 arm64 2.3.8-3 [86.6 kB]
Get:86 http://mirror.einval.org/debian sid/main i386 libuil4 i386 2.3.8-3 [153 kB]
Get:87 http://mirror.einval.org/debian sid/main arm64 libuil4 arm64 2.3.8-3 [150 kB]
Get:88 http://mirror.einval.org/debian sid/main i386 gcc-10-base i386 10.3.0-11 [206 kB]
Get:89 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB]
Get:90 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.39-3 [121 kB]
Get:91 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.39-3 [69.1 kB]
Get:92 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB]
Get:93 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB]
Get:94 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB]
Get:95 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB]
Get:96 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:97 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.4-2 [819 kB]
Get:98 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB]
Get:99 http://mirror.einval.org/debian sid/main arm64 gcc-10-i686-linux-gnu-base arm64 10.3.0-8cross1 [205 kB]
Get:100 http://mirror.einval.org/debian sid/main arm64 cpp-10-i686-linux-gnu arm64 10.3.0-8cross1 [46.2 MB]
Get:101 http://mirror.einval.org/debian sid/main arm64 cpp-i686-linux-gnu arm64 4:10.2.1-1 [16.8 kB]
Get:102 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB]
Get:103 http://mirror.einval.org/debian sid/main arm64 binutils-i686-linux-gnu arm64 2.37-7 [2045 kB]
Get:104 http://mirror.einval.org/debian sid/main arm64 gcc-10-cross-base all 10.3.0-8cross1 [200 kB]
Get:105 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.2.0-5cross1 [201 kB]
Get:106 http://mirror.einval.org/debian sid/main arm64 libc6-i386-cross all 2.32-1cross4 [1512 kB]
Get:107 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-i386-cross all 11.2.0-5cross1 [49.9 kB]
Get:108 http://mirror.einval.org/debian sid/main arm64 libgomp1-i386-cross all 11.2.0-5cross1 [108 kB]
Get:109 http://mirror.einval.org/debian sid/main arm64 libitm1-i386-cross all 11.2.0-5cross1 [27.3 kB]
Get:110 http://mirror.einval.org/debian sid/main arm64 libatomic1-i386-cross all 11.2.0-5cross1 [7544 B]
Get:111 http://mirror.einval.org/debian sid/main arm64 libasan6-i386-cross all 11.2.0-5cross1 [1926 kB]
Get:112 http://mirror.einval.org/debian sid/main arm64 libstdc++6-i386-cross all 11.2.0-5cross1 [576 kB]
Get:113 http://mirror.einval.org/debian sid/main arm64 libubsan1-i386-cross all 11.2.0-5cross1 [812 kB]
Get:114 http://mirror.einval.org/debian sid/main arm64 libquadmath0-i386-cross all 11.2.0-5cross1 [226 kB]
Get:115 http://mirror.einval.org/debian sid/main arm64 libgcc-10-dev-i386-cross all 10.3.0-8cross1 [2319 kB]
Get:116 http://mirror.einval.org/debian sid/main arm64 gcc-10-i686-linux-gnu arm64 10.3.0-8cross1 [52.3 MB]
Get:117 http://mirror.einval.org/debian sid/main arm64 gcc-i686-linux-gnu arm64 4:10.2.1-1 [1452 B]
Get:118 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-i386-cross all 5.10.46-4cross4 [1468 kB]
Get:119 http://mirror.einval.org/debian sid/main arm64 libc6-dev-i386-cross all 2.32-1cross4 [2134 kB]
Get:120 http://mirror.einval.org/debian sid/main arm64 libstdc++-10-dev-i386-cross all 10.3.0-8cross1 [1785 kB]
Get:121 http://mirror.einval.org/debian sid/main arm64 g++-10-i686-linux-gnu arm64 10.3.0-8cross1 [49.3 MB]
Get:122 http://mirror.einval.org/debian sid/main arm64 g++-i686-linux-gnu arm64 4:10.2.1-1 [1176 B]
Get:123 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:124 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB]
Get:125 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB]
Get:126 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.12+dfsg-5 [632 kB]
Get:127 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB]
Get:128 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB]
Get:129 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:130 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-2+b1 [326 kB]
Get:131 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:132 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB]
Get:133 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB]
Get:134 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:135 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB]
Get:136 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB]
Get:137 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB]
Get:138 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-i386 all 12.9 [6704 B]
Get:139 http://mirror.einval.org/debian sid/main arm64 csh arm64 20110502-6 [237 kB]
Get:140 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.5.2 [192 kB]
Get:141 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB]
Get:142 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:143 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:144 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:145 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:146 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:147 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.185-2 [171 kB]
Get:148 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB]
Get:149 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB]
Get:150 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:151 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:152 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.5.2 [1056 kB]
Get:153 http://mirror.einval.org/debian sid/main i386 libasan6 i386 11.2.0-8 [1933 kB]
Get:154 http://mirror.einval.org/debian sid/main i386 libbrotli-dev i386 1.0.9-2+b2 [287 kB]
Get:155 http://mirror.einval.org/debian sid/main i386 linux-libc-dev i386 5.14.6-2 [1420 kB]
Get:156 http://mirror.einval.org/debian sid/main i386 libcrypt1 i386 1:4.4.25-2 [98.5 kB]
Get:157 http://mirror.einval.org/debian sid/main i386 libcrypt-dev i386 1:4.4.25-2 [115 kB]
Get:158 http://mirror.einval.org/debian sid/main i386 libcom-err2 i386 1.46.4-1 [75.6 kB]
Get:159 http://mirror.einval.org/debian sid/main i386 libkrb5support0 i386 1.18.3-7 [68.6 kB]
Get:160 http://mirror.einval.org/debian sid/main i386 libk5crypto3 i386 1.18.3-7 [117 kB]
Get:161 http://mirror.einval.org/debian sid/main i386 libkeyutils1 i386 1.6.1-2 [15.9 kB]
Get:162 http://mirror.einval.org/debian sid/main i386 libssl1.1 i386 1.1.1l-1 [1552 kB]
Get:163 http://mirror.einval.org/debian sid/main i386 libkrb5-3 i386 1.18.3-7 [390 kB]
Get:164 http://mirror.einval.org/debian sid/main i386 libgssapi-krb5-2 i386 1.18.3-7 [176 kB]
Get:165 http://mirror.einval.org/debian sid/main i386 libtirpc3 i386 1.3.2-2 [91.3 kB]
Get:166 http://mirror.einval.org/debian sid/main i386 libnsl2 i386 1.3.0-2 [42.2 kB]
Get:167 http://mirror.einval.org/debian sid/main i386 libtirpc-dev i386 1.3.2-2 [201 kB]
Get:168 http://mirror.einval.org/debian sid/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB]
Get:169 http://mirror.einval.org/debian sid/main i386 libc6-dev i386 2.32-4 [2136 kB]
Get:170 http://mirror.einval.org/debian sid/main i386 libglvnd0 i386 1.3.4-2+b1 [44.2 kB]
Get:171 http://mirror.einval.org/debian sid/main i386 libffi8 i386 3.4.2-2 [23.3 kB]
Get:172 http://mirror.einval.org/debian sid/main i386 libwayland-server0 i386 1.19.0-2+b1 [36.3 kB]
Get:173 http://mirror.einval.org/debian sid/main i386 libgbm1 i386 21.2.2-1 [78.2 kB]
Get:174 http://mirror.einval.org/debian sid/main i386 libwayland-client0 i386 1.19.0-2+b1 [28.0 kB]
Get:175 http://mirror.einval.org/debian sid/main i386 libx11-xcb1 i386 2:1.7.2-2+b1 [203 kB]
Get:176 http://mirror.einval.org/debian sid/main i386 libxcb-dri2-0 i386 1.14-3 [103 kB]
Get:177 http://mirror.einval.org/debian sid/main i386 libxcb-dri3-0 i386 1.14-3 [103 kB]
Get:178 http://mirror.einval.org/debian sid/main i386 libxcb-present0 i386 1.14-3 [101 kB]
Get:179 http://mirror.einval.org/debian sid/main i386 libxcb-sync1 i386 1.14-3 [105 kB]
Get:180 http://mirror.einval.org/debian sid/main i386 libxcb-xfixes0 i386 1.14-3 [105 kB]
Get:181 http://mirror.einval.org/debian sid/main i386 libxshmfence1 i386 1.3-1 [8976 B]
Get:182 http://mirror.einval.org/debian sid/main i386 libegl-mesa0 i386 21.2.2-1 [151 kB]
Get:183 http://mirror.einval.org/debian sid/main i386 libegl1 i386 1.3.4-2+b1 [37.3 kB]
Get:184 http://mirror.einval.org/debian sid/main i386 libxcb-glx0 i386 1.14-3 [120 kB]
Get:185 http://mirror.einval.org/debian sid/main i386 libxcb-shm0 i386 1.14-3 [102 kB]
Get:186 http://mirror.einval.org/debian sid/main i386 libxfixes3 i386 1:5.0.3-2 [22.6 kB]
Get:187 http://mirror.einval.org/debian sid/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB]
Get:188 http://mirror.einval.org/debian sid/main i386 libglx-mesa0 i386 21.2.2-1 [192 kB]
Get:189 http://mirror.einval.org/debian sid/main i386 libglx0 i386 1.3.4-2+b1 [39.6 kB]
Get:190 http://mirror.einval.org/debian sid/main i386 libgl1 i386 1.3.4-2+b1 [85.1 kB]
Get:191 http://mirror.einval.org/debian sid/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:192 http://mirror.einval.org/debian sid/main arm64 x11proto-dev all 2021.5-1 [599 kB]
Get:193 http://mirror.einval.org/debian sid/main i386 libxau-dev i386 1:1.0.9-1 [23.3 kB]
Get:194 http://mirror.einval.org/debian sid/main i386 libxdmcp-dev i386 1:1.1.2-3 [42.7 kB]
Get:195 http://mirror.einval.org/debian sid/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get:196 http://mirror.einval.org/debian sid/main i386 libpthread-stubs0-dev i386 0.4-1 [5340 B]
Get:197 http://mirror.einval.org/debian sid/main i386 libxcb1-dev i386 1.14-3 [181 kB]
Get:198 http://mirror.einval.org/debian sid/main i386 libx11-dev i386 2:1.7.2-2+b1 [874 kB]
Get:199 http://mirror.einval.org/debian sid/main i386 libglx-dev i386 1.3.4-2+b1 [16.8 kB]
Get:200 http://mirror.einval.org/debian sid/main i386 libgl-dev i386 1.3.4-2+b1 [101 kB]
Get:201 http://mirror.einval.org/debian sid/main i386 libegl-dev i386 1.3.4-2+b1 [20.4 kB]
Get:202 http://mirror.einval.org/debian sid/main i386 libevent-2.1-7 i386 2.1.12-stable-1 [203 kB]
Get:203 http://mirror.einval.org/debian sid/main i386 libexpat1-dev i386 2.4.1-2+b1 [165 kB]
Get:204 http://mirror.einval.org/debian sid/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB]
Get:205 http://mirror.einval.org/debian sid/main i386 libpng-dev i386 1.6.37-3 [307 kB]
Get:206 http://mirror.einval.org/debian sid/main i386 libfreetype-dev i386 2.10.4+dfsg-1 [588 kB]
Get:207 http://mirror.einval.org/debian sid/main i386 libfreetype6-dev i386 2.10.4+dfsg-1 [82.4 kB]
Get:208 http://mirror.einval.org/debian sid/main i386 uuid-dev i386 2.37.2-3 [95.7 kB]
Get:209 http://mirror.einval.org/debian sid/main arm64 libglib2.0-0 arm64 2.70.0-1+b1 [1311 kB]
Get:210 http://mirror.einval.org/debian sid/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB]
Get:211 http://mirror.einval.org/debian sid/main i386 libfontconfig-dev i386 2.13.1-4.2 [383 kB]
Get:212 http://mirror.einval.org/debian sid/main i386 libfontconfig1-dev i386 2.13.1-4.2 [238 kB]
Get:213 http://mirror.einval.org/debian sid/main i386 libgomp1 i386 11.2.0-8 [110 kB]
Get:214 http://mirror.einval.org/debian sid/main i386 libitm1 i386 11.2.0-8 [27.7 kB]
Get:215 http://mirror.einval.org/debian sid/main i386 libubsan1 i386 11.2.0-8 [813 kB]
Get:216 http://mirror.einval.org/debian sid/main i386 libquadmath0 i386 11.2.0-8 [226 kB]
Get:217 http://mirror.einval.org/debian sid/main i386 libgcc-10-dev i386 10.3.0-11 [2317 kB]
Get:218 http://mirror.einval.org/debian sid/main i386 libglvnd-core-dev i386 1.3.4-2+b1 [14.4 kB]
Get:219 http://mirror.einval.org/debian sid/main i386 libgles1 i386 1.3.4-2+b1 [13.1 kB]
Get:220 http://mirror.einval.org/debian sid/main i386 libgles2 i386 1.3.4-2+b1 [17.7 kB]
Get:221 http://mirror.einval.org/debian sid/main i386 libgles-dev i386 1.3.4-2+b1 [50.9 kB]
Get:222 http://mirror.einval.org/debian sid/main i386 libopengl0 i386 1.3.4-2+b1 [30.7 kB]
Get:223 http://mirror.einval.org/debian sid/main i386 libopengl-dev i386 1.3.4-2+b1 [6408 B]
Get:224 http://mirror.einval.org/debian sid/main i386 libglvnd-dev i386 1.3.4-2+b1 [6176 B]
Get:225 http://mirror.einval.org/debian sid/main i386 libgl1-mesa-dev i386 21.2.2-1 [53.9 kB]
Get:226 http://mirror.einval.org/debian sid/main i386 libglu1-mesa i386 9.0.1-1 [178 kB]
Get:227 http://mirror.einval.org/debian sid/main i386 libglu1-mesa-dev i386 9.0.1-1 [223 kB]
Get:228 http://mirror.einval.org/debian sid/main i386 libgmp10 i386 2:6.2.1+dfsg-2 [570 kB]
Get:229 http://mirror.einval.org/debian sid/main i386 libgmpxx4ldbl i386 2:6.2.1+dfsg-2 [338 kB]
Get:230 http://mirror.einval.org/debian sid/main i386 libgmp-dev i386 2:6.2.1+dfsg-2 [656 kB]
Get:231 http://mirror.einval.org/debian sid/main i386 libnettle8 i386 3.7.3-1 [286 kB]
Get:232 http://mirror.einval.org/debian sid/main i386 libhogweed6 i386 3.7.3-1 [323 kB]
Get:233 http://mirror.einval.org/debian sid/main i386 libunistring2 i386 0.9.10-6 [391 kB]
Get:234 http://mirror.einval.org/debian sid/main i386 libidn2-0 i386 2.3.2-2 [96.4 kB]
Get:235 http://mirror.einval.org/debian sid/main i386 libp11-kit0 i386 0.24.0-2+b1 [341 kB]
Get:236 http://mirror.einval.org/debian sid/main i386 libtasn1-6 i386 4.17.0-2 [58.0 kB]
Get:237 http://mirror.einval.org/debian sid/main i386 libgnutls30 i386 3.7.2-2 [1358 kB]
Get:238 http://mirror.einval.org/debian sid/main i386 libunbound8 i386 1.13.1-1 [536 kB]
Get:239 http://mirror.einval.org/debian sid/main i386 libgnutls-dane0 i386 3.7.2-2 [405 kB]
Get:240 http://mirror.einval.org/debian sid/main i386 libgnutls-openssl27 i386 3.7.2-2 [405 kB]
Get:241 http://mirror.einval.org/debian sid/main i386 libgnutlsxx28 i386 3.7.2-2 [15.4 kB]
Get:242 http://mirror.einval.org/debian sid/main i386 libidn2-dev i386 2.3.2-2 [92.6 kB]
Get:243 http://mirror.einval.org/debian sid/main i386 libp11-kit-dev i386 0.24.0-2+b1 [221 kB]
Get:244 http://mirror.einval.org/debian sid/main i386 libtasn1-6-dev i386 4.17.0-2 [109 kB]
Get:245 http://mirror.einval.org/debian sid/main i386 nettle-dev i386 3.7.3-1 [1285 kB]
Get:246 http://mirror.einval.org/debian sid/main i386 libgnutls28-dev i386 3.7.2-2 [1373 kB]
Get:247 http://mirror.einval.org/debian sid/main i386 libice-dev i386 2:1.0.10-1 [70.5 kB]
Get:248 http://mirror.einval.org/debian sid/main i386 libxrender-dev i386 1:0.9.10-1 [42.2 kB]
Get:249 http://mirror.einval.org/debian sid/main i386 libxft-dev i386 2.3.2-2 [70.4 kB]
Get:250 http://mirror.einval.org/debian sid/main i386 libsm-dev i386 2:1.2.3-1 [38.8 kB]
Get:251 http://mirror.einval.org/debian sid/main i386 libxt-dev i386 1:1.2.0-1 [421 kB]
Get:252 http://mirror.einval.org/debian sid/main arm64 uil arm64 2.3.8-3 [38.8 kB]
Get:253 http://mirror.einval.org/debian sid/main i386 libmotif-dev i386 2.3.8-3 [2583 kB]
Get:254 http://mirror.einval.org/debian sid/main i386 libpcre16-3 i386 2:8.39-13 [258 kB]
Get:255 http://mirror.einval.org/debian sid/main i386 libpcre3 i386 2:8.39-13 [342 kB]
Get:256 http://mirror.einval.org/debian sid/main i386 libpcre32-3 i386 2:8.39-13 [249 kB]
Get:257 http://mirror.einval.org/debian sid/main i386 libpcrecpp0v5 i386 2:8.39-13 [153 kB]
Get:258 http://mirror.einval.org/debian sid/main i386 libpcre3-dev i386 2:8.39-13 [656 kB]
Get:259 http://mirror.einval.org/debian sid/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B]
Get:260 http://mirror.einval.org/debian sid/main i386 libstdc++-10-dev i386 10.3.0-11 [1795 kB]
Get:261 http://mirror.einval.org/debian sid/main arm64 libxau-dev arm64 1:1.0.9-1 [23.2 kB]
Get:262 http://mirror.einval.org/debian sid/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB]
Get:263 http://mirror.einval.org/debian sid/main arm64 libxcb1-dev arm64 1.14-3 [177 kB]
Get:264 http://mirror.einval.org/debian sid/main arm64 libx11-dev arm64 2:1.7.2-2+b1 [832 kB]
Get:265 http://mirror.einval.org/debian sid/main i386 libxext-dev i386 2:1.3.4-1 [111 kB]
Get:266 http://mirror.einval.org/debian sid/main arm64 libxmu-headers all 2:1.1.2-2 [51.9 kB]
Get:267 http://mirror.einval.org/debian sid/main i386 libxmu-dev i386 2:1.1.2-2+b3 [70.3 kB]
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Setting up libxcb-present0:i386 (1.14-3) ...
Setting up libxdmcp-dev:i386 (1:1.1.2-3) ...
Setting up libpcre3:i386 (2:8.39-13) ...
Setting up libz3-4:i386 (4.8.12-1+b1) ...
Setting up libgles2:i386 (1.3.4-2+b1) ...
Setting up libjpeg62-turbo:i386 (1:2.0.6-4) ...
Setting up libnettle8:i386 (3.7.3-1) ...
Setting up libxcb-sync1:i386 (1.14-3) ...
Setting up libgmp10:i386 (2:6.2.1+dfsg-2) ...
Setting up libgles1:i386 (1.3.4-2+b1) ...
Setting up libquadmath0:i386 (11.2.0-8) ...
Setting up libp11-kit0:i386 (0.24.0-2+b1) ...
Setting up libpng16-16:i386 (1.6.37-3) ...
Setting up libpcre32-3:i386 (2:8.39-13) ...
Setting up libatomic1:i386 (11.2.0-8) ...
Setting up libuuid1:i386 (2.37.2-3) ...
Setting up libevent-2.1-7:i386 (2.1.12-stable-1) ...
Setting up libsensors5:i386 (1:3.6.0-7) ...
Setting up libk5crypto3:i386 (1.18.3-7) ...
Setting up libidn2-dev:i386 (2.3.2-2) ...
Setting up libglapi-mesa:i386 (21.2.2-1) ...
Setting up libvulkan1:i386 (1.2.189.0-2) ...
Setting up libubsan1:i386 (11.2.0-8) ...
Setting up libxcb-dri2-0:i386 (1.14-3) ...
Setting up libcrypt-dev:i386 (1:4.4.25-2) ...
Setting up libx11-6:i386 (2:1.7.2-2+b1) ...
Setting up libkrb5-3:i386 (1.18.3-7) ...
Setting up libopengl-dev:i386 (1.3.4-2+b1) ...
Setting up libelf1:i386 (0.185-2) ...
Setting up libsm6:i386 (2:1.2.3-1) ...
Setting up libxml2:i386 (2.9.12+dfsg-5) ...
Setting up libbrotli-dev:i386 (1.0.9-2+b2) ...
Setting up libp11-kit-dev:i386 (0.24.0-2+b1) ...
Setting up libpcrecpp0v5:i386 (2:8.39-13) ...
Setting up libxcb-dri3-0:i386 (1.14-3) ...
Setting up libx11-xcb1:i386 (2:1.7.2-2+b1) ...
Setting up libpciaccess0:i386 (0.16-1) ...
Setting up libhogweed6:i386 (3.7.3-1) ...
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Setting up libsm-dev:i386 (2:1.2.3-1) ...
Setting up libgcc-10-dev:i386 (10.3.0-11) ...
Setting up libdrm-intel1:i386 (2.4.107-6) ...
Setting up libx11-dev:i386 (2:1.7.2-2+b1) ...
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Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ...
Setting up libegl-mesa0:i386 (21.2.2-1) ...
Setting up libunbound8:i386 (1.13.1-1) ...
Setting up libgnutls30:i386 (3.7.2-2) ...
Setting up libgmpxx4ldbl:i386 (2:6.2.1+dfsg-2) ...
Setting up libfreetype6:i386 (2.10.4+dfsg-1) ...
Setting up libxfixes3:i386 (1:5.0.3-2) ...
Setting up libllvm12:i386 (1:12.0.1-9) ...
Setting up libgssapi-krb5-2:i386 (1.18.3-7) ...
Setting up libgnutlsxx28:i386 (3.7.2-2) ...
Setting up libxt6:i386 (1:1.2.0-1) ...
Setting up libxext-dev:i386 (2:1.3.4-1) ...
Setting up libegl1:i386 (1.3.4-2+b1) ...
Setting up libfontconfig1:i386 (2.13.1-4.2) ...
Setting up libxrender-dev:i386 (1:0.9.10-1) ...
Setting up libtirpc3:i386 (1.3.2-2) ...
Setting up libgnutls-dane0:i386 (3.7.2-2) ...
Setting up libxft2:i386 (2.3.2-2) ...
Setting up libxmu6:i386 (2:1.1.2-2+b3) ...
Setting up libgnutls-openssl27:i386 (3.7.2-2) ...
Setting up libgmp-dev:i386 (2:6.2.1+dfsg-2) ...
Setting up nettle-dev:i386 (3.7.3-1) ...
Setting up libgl1-mesa-dri:i386 (21.2.2-1) ...
Setting up libtirpc-dev:i386 (1.3.2-2) ...
Setting up libxt-dev:i386 (1:1.2.0-1) ...
Setting up libnsl2:i386 (1.3.0-2) ...
Setting up libxm4:i386 (2.3.8-3) ...
Setting up libglx-mesa0:i386 (21.2.2-1) ...
Setting up libglx0:i386 (1.3.4-2+b1) ...
Setting up libxmu-dev:i386 (2:1.1.2-2+b3) ...
Setting up libgl1:i386 (1.3.4-2+b1) ...
Setting up libmrm4:i386 (2.3.8-3) ...
Setting up libuil4:i386 (2.3.8-3) ...
Setting up libnsl-dev:i386 (1.3.0-2) ...
Setting up libc6-dev:i386 (2.32-4) ...
Setting up libglx-dev:i386 (1.3.4-2+b1) ...
Setting up libglu1-mesa:i386 (9.0.1-1) ...
Setting up libgl-dev:i386 (1.3.4-2+b1) ...
Setting up libgnutls28-dev:i386 (3.7.2-2) ...
Setting up libstdc++-10-dev:i386 (10.3.0-11) ...
Setting up libegl-dev:i386 (1.3.4-2+b1) ...
Setting up libpcre3-dev:i386 (2:8.39-13) ...
Setting up libexpat1-dev:i386 (2.4.1-2+b1) ...
Setting up uuid-dev:i386 (2.37.2-3) ...
Setting up libglu1-mesa-dev:i386 (9.0.1-1) ...
Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ...
Setting up libgles-dev:i386 (1.3.4-2+b1) ...
Setting up libpng-dev:i386 (1.6.37-3) ...
Setting up libglvnd-dev:i386 (1.3.4-2+b1) ...
Setting up libfreetype-dev:i386 (2.10.4+dfsg-1) ...
Setting up libgl1-mesa-dev:i386 (21.2.2-1) ...
Setting up libfreetype6-dev:i386 (2.10.4+dfsg-1) ...
Setting up libfontconfig-dev:i386 (2.13.1-4.2) ...
Setting up libxft-dev:i386 (2.3.2-2) ...
Setting up libfontconfig1-dev:i386 (2.13.1-4.2) ...
Setting up libmotif-dev:i386 (2.3.8-3) ...
Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (i386 included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64)
Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-10_10.3.0-11 gcc-10_10.3.0-11 libc6-dev_2.32-4 libstdc++-10-dev_10.3.0-11 libstdc++-10-dev-i386-cross_10.3.0-8cross1 libstdc++6_11.2.0-8 libstdc++6-i386-cross_11.2.0-5cross1 linux-libc-dev_5.14.6-2
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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA256

Format: 3.0 (quilt)
Source: ncbi-tools6
Binary: libncbi6, libncbi6-dev, ncbi-data, ncbi-rrna-data, ncbi-tools-bin, ncbi-tools-x11, ncbi-cn3d, libvibrant6b, libvibrant6-dev
Architecture: any all
Version: 6.1.20170106+dfsg1-9
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Aaron M. Ucko <ucko@debian.org>
Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/ncbi-tools6
Vcs-Git: https://salsa.debian.org/med-team/ncbi-tools6.git
Testsuite: autopkgtest
Testsuite-Triggers: netcat
Build-Depends: debhelper-compat (= 12)
Build-Depends-Arch: csh | c-shell, libglu1-mesa-dev | libglu-dev, libgnutls28-dev | gnutls-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
Build-Depends-Indep: icoutils, imagemagick
Package-List:
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 libncbi6-dev deb libdevel optional arch=any
 libvibrant6-dev deb libdevel optional arch=any
 libvibrant6b deb libs optional arch=any
 ncbi-cn3d deb science optional arch=any
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 ncbi-rrna-data deb science optional arch=all
 ncbi-tools-bin deb science optional arch=any
 ncbi-tools-x11 deb science optional arch=any
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 ff6fca2b1d964403b49423b8ac27cdbb 1512872 ncbi-tools6_6.1.20170106+dfsg1-9.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.BO7vNIyX/trustedkeys.kbx': General error
gpgv: Signature made Tue Oct 13 02:16:07 2020 UTC
gpgv:                using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ncbi-tools6_6.1.20170106+dfsg1-9.dsc
dpkg-source: info: extracting ncbi-tools6 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking ncbi-tools6_6.1.20170106+dfsg1.orig.tar.xz
dpkg-source: info: unpacking ncbi-tools6_6.1.20170106+dfsg1-9.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying debian-changes

Check disk space
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Sufficient free space for build

+------------------------------------------------------------------------------+
| Starting Timed Build Commands                                                |
+------------------------------------------------------------------------------+


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User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.i386
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmutg
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=crossqa-sid
SCHROOT_CHROOT_NAME=crossqa-sid
SCHROOT_COMMAND=env
SCHROOT_GID=1002
SCHROOT_GROUP=helmutg
SCHROOT_SESSION_ID=crossqa-sid-021d25a3-af40-4458-8e2d-93fbf37cc389
SCHROOT_UID=1002
SCHROOT_USER=helmutg
SHELL=/bin/sh
USER=helmutg

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package ncbi-tools6
dpkg-buildpackage: info: source version 6.1.20170106+dfsg1-9
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Aaron M. Ucko <ucko@debian.org>
dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
dpkg-source: info: using options from ncbi-tools6-6.1.20170106+dfsg1/debian/source/options: --single-debian-patch
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf build/* bin/* include/* lib/* shlib
mkdir -p build bin include lib
rm -f debian/*.menu debian/asntool.xpm debian/ncbilogo.xpm
chmod -x debian/makemenu debian/installman
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd build && ln -s ../make/*.unx .
ln -s ../make/ln-if-absent build
mv build/makeall.unx build/makefile
/usr/bin/make -C build all LCL=lnx CC="i686-linux-gnu-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG" \
    LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
    LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
rm -f ../include/asn.h
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_assert.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_connssl.h .
./ln-if-absent ../connect/ncbi_lbos.h .
./ln-if-absent ../connect/ncbi_lbosp.h .
./ln-if-absent ../connect/parson.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
make[2]: [makefile:714: copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
make[2]: [makefile:715: copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_socketp.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/ncbi_local.h .
./ln-if-absent ../connect/ncbi_lb.h .
./ln-if-absent ../connect/ncbi_version.h .
./ln-if-absent ../connect/ncbi_base64.h .
./ln-if-absent ../connect/urlquery.h ../include
mkdir ../include/connect
chmod ug+rw,o+r ../include/connect
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../util/tables/*.c .
mkdir -p ../include/util/tables
cp -fp ../util/tables/*.h ../include/util/tables
./ln-if-absent ../util/creaders/*.c .
mkdir -p ../include/util/creaders
cp -fp ../util/creaders/*.h ../include/util/creaders
./ln-if-absent ../ctools/*.c .
./ln-if-absent ../ctools/*.h .
mkdir ../include/ctools
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../api/*.inc .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
set: No match.
make[2]: [makefile:771: copy] Error 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
set: No match.
make[2]: [makefile:772: copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
set: No match.
make[2]: [makefile:773: copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
set: No match.
make[2]: [makefile:774: copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
set: No match.
make[2]: [makefile:775: copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
set: No match.
make[2]: [makefile:776: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
set: No match.
make[2]: [makefile:777: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
set: No match.
make[2]: [makefile:778: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
set: No match.
make[2]: [makefile:779: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
make[2]: [makefile:780: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
set: No match.
make[2]: [makefile:781: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
set: No match.
make[2]: [makefile:782: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
set: No match.
make[2]: [makefile:783: copy] Error 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id2arch/*.h ../include
mkdir -p ../include/algo/blast/core
./ln-if-absent ../algo/blast/core/*.c .
./ln-if-absent ../algo/blast/core/*.h .
./ln-if-absent ../algo/blast/core/*.inl .
cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
mkdir -p ../include/algo/blast/composition_adjustment
./ln-if-absent ../algo/blast/composition_adjustment/*.c .
cp -fp ../algo/blast/composition_adjustment/*.h \
	../include/algo/blast/composition_adjustment
mkdir -p ../include/algo/blast/api
./ln-if-absent ../algo/blast/api/*.c .
cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ncbithr.c:289:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbithr.c: In function ‘s_TlsDestroyAll’:
ncbithr.c:2529:11: warning: variable ‘err_code’ set but not used [-Wunused-but-set-variable]
 2529 |       int err_code = 0;
      |           ^~~~~~~~
cp -p ncbithr.o ../lib
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimain.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimain.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimain.c:82:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
   82 | main(int argc, char *argv[])
      | ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbibs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbibs.c:55:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbibs.c: In function ‘Nlm_BSSeek’:
ncbibs.c:448:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  448 |     if (sp == bsp->seekptr)     /* already in right position */
      |     ^~
ncbibs.c:451:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  451 |  bsp->seekptr = sp;
      |  ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wwwutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbiwww.h:106,
                 from wwwutils.c:150:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbierr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbierr.c:235:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbierr.c:235:
In function ‘strncat’,
    inlined from ‘ErrMsgRoot_fopen’ at ncbierr.c:955:13:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 4096 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbienv.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
In function ‘strncpy’,
    inlined from ‘Nlm_WorkGetAppParam.part.0’ at ncbienv.c:466:11:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from corepriv.h:85,
                 from ncbienv.c:310:
ncbienv.c: In function ‘Nlm_WorkGetAppParam.part.0’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’
  305 | #define StrLen  Nlm_StrLen
      |                 ^~~~~~~~~~
ncbienv.c:464:36: note: in expansion of macro ‘StrLen’
  464 |           Nlm_Int2 bytesToAppend = StrLen(eip->name) + 1;
      |                                    ^~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
In function ‘strncpy’,
    inlined from ‘Nlm_TransientLookup.part.0’ at ncbienv.c:1788:15:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from corepriv.h:85,
                 from ncbienv.c:310:
ncbienv.c: In function ‘Nlm_TransientLookup.part.0’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’
  305 | #define StrLen  Nlm_StrLen
      |                 ^~~~~~~~~~
ncbienv.c:1786:31: note: in expansion of macro ‘StrLen’
 1786 |               bytesToAppend = StrLen(eip->name) + 1;
      |                               ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbifile.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbifile.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiprop.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbiprop.c:104:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimath.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbimath.h:69,
                 from ncbimath.c:90:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimath.c: In function ‘general_lngamma’:
ncbimath.c:230:5: warning: ‘y[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  230 |  ++y[0];
      |    ~^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimem.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimem.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimisc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimisc.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimisc.c: In function ‘Nlm_MD5Final’:
ncbimisc.c:2250:26: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess]
 2250 |     memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */
      |                          ^
ncbimisc.c: In function ‘XmlPathSuffixIs’:
ncbimisc.c:2966:58: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2966 |     if (StringHasNoText (parentFilter) || parent != NULL && StringICmp (parent->name, parentFilter) == 0) {
      |                                           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimsg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbimsg.c:167:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbistr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbistr.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisgml.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbisgml.c:83:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ncbisgml.c:83:
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbitime.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbitime.c:77:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbilang.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbilang.c:57:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnbufo.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asnbufo.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asndebin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asndebin.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asndebin.c: In function ‘AsnBinReadVal’:
asndebin.c:565:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  565 |     else
      |     ^~~~
asndebin.c:568:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  568 |  if (atp == NULL)
      |  ^~
asndebin.c:634:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  634 |             else                     /* empty sequence written */
      |             ^~~~
asndebin.c:636:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  636 |       while (atp2 != NULL)
      |       ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnenbin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnenbin.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asngen.c:80:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asngen.c: In function ‘AsnFindNthPieceOfObject’:
asngen.c:540:16: warning: variable ‘aeop’ set but not used [-Wunused-but-set-variable]
  540 |   AsnExpOptPtr aeop;
      |                ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnio.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnio.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnio.c: In function ‘AsnIoWriteBlock’:
asnio.c:698:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  698 |     else                    /* use alternative write function */
      |     ^~~~
asnio.c:701:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  701 |  if (retval != bytes_to_write)
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlex.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnlex.c:52:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnlex.c: In function ‘AsnTxtReadId’:
asnlex.c:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if ((token == END_STRUCT) && ((isa == SEQ_TYPE) || (isa == SET_TYPE)))
      |     ^~
asnlex.c:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |  if (token != IDENT)
      |  ^~
asnlex.c: In function ‘AsnTxtReadVal’:
asnlex.c:345:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  345 |             else                     /* empty sequence written */
      |             ^~~~
asnlex.c:347:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  347 |       while (atp2 != NULL)
      |       ^~~~~
At top level:
asnlex.c:1290:13: warning: ‘AsnLexWordUTF8’ defined but not used [-Wunused-function]
 1290 | static Int2 AsnLexWordUTF8 (AsnIoPtr aip)
      |             ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlext.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnlext.c:57:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnout.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnout.c:79:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnout.c: In function ‘AsnOutput’:
asnout.c:159:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  159 |     else
      |     ^~~~
asnout.c:162:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  162 |  for (i = 0; i < 12; i++)
      |  ^~~
asnout.c:213:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  213 |         if (! loader)
      |         ^~
asnout.c:216:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  216 |   attvp = p.root_tmpvalue.next;
      |   ^~~~~
asnout.c:270:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  270 |     if (! loader)
      |     ^~
asnout.c:273:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  273 |  attp = p.root_tmptype.next;
      |  ^~~~
asnout.c:450:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  450 |     if (! loader)
      |     ^~
asnout.c:453:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  453 |  i = 1;
      |  ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnprint.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnprint.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnprint.c: In function ‘GetXMLModuleName’:
asnprint.c:102:2: warning: statement with no effect [-Wunused-value]
  102 |  for (currmod; currmod != NULL; currmod = currmod->next)
      |  ^~~
asnprint.c: In function ‘AsnPrintCloseStruct’:
asnprint.c:1774:7: warning: variable ‘isa’ set but not used [-Wunused-but-set-variable]
 1774 |  Int2 isa;
      |       ^~~
asnprint.c: In function ‘AsnPrintModuleXMLInc’:
asnprint.c:2095:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable]
 2095 |  CharPtr ptr;
      |          ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asntypes.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asntypes.c:111:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asntypes.c: In function ‘AsnEnumTypeStr’:
asntypes.c:1383:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1383 |     if ((atp->type->isa != ENUM_TYPE) && (atp->type->isa != INTEGER_TYPE))
      |     ^~
asntypes.c:1386:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1386 |  avnp = (AsnValxNodePtr) atp->branch;
      |  ^~~~
asntypes.c: In function ‘AsnTreeLoad’:
asntypes.c:1274:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1274 |     fscanf(fp, "%d %d %d", &numval, &numtype, &nummod);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1288:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1288 |         fscanf(fp, "%d %s %ld %lf %d", &isa, name, &intvalue, &realvalue, &next);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1301:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1301 |         fscanf(fp, "%d %s %d %d %d %d %d %d %d %d %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1302 |             &isa, name, &tagclass, &tagnumber, bools, bools+1, bools+2,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1303 |             bools+3, bools+4, &defaultvalue, &type, &branch, &next);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1333:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1333 |         fscanf(fp, "%s %s %d %d", name, fname, &type, &next);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngenob.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asngenob.c:72:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gifgen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gifgen.c:137:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from gifgen.c:137:
gifgen.c: In function ‘gdImageSetClip’:
../include/ncbimem.h:194:21: warning: ‘__builtin_memcmp_eq’ reading 16 bytes from a region of size 4 [-Wstringop-overflow=]
  194 | #define Nlm_MemCmp  memcmp
../include/ncbimem.h:213:17: note: in expansion of macro ‘Nlm_MemCmp’
  213 | #define MemCmp  Nlm_MemCmp
      |                 ^~~~~~~~~~
gifgen.c:1850:17: note: in expansion of macro ‘MemCmp’
 1850 |   if (clip  &&  MemCmp(&clip, &empty_clip, sizeof(gdRect))) {
      |                 ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF togif.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from togif.c:111:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
togif.c: In function ‘gdImageCreateFromGif’:
togif.c:961:12: warning: variable ‘AspectRatio’ set but not used [-Wunused-but-set-variable]
  961 |        int AspectRatio;
      |            ^~~~~~~~~~~
togif.c:960:12: warning: variable ‘Background’ set but not used [-Wunused-but-set-variable]
  960 |        int Background;
      |            ^~~~~~~~~~
togif.c:959:12: warning: variable ‘ColorResolution’ set but not used [-Wunused-but-set-variable]
  959 |        int ColorResolution;
      |            ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithrs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ncbithrs.c:289:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbithrs.c: In function ‘s_TlsDestroyAll’:
ncbithrs.c:2529:11: warning: unused variable ‘err_code’ [-Wunused-variable]
 2529 |       int err_code = 0;
      |           ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
regex.c: In function ‘re_match_2’:
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3768 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3915 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3968 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:4071:25: warning: variable ‘sdummy’ set but not used [-Wunused-but-set-variable]
 4071 |             const char *sdummy;
      |                         ^~~~~~
regex.c:4070:28: warning: variable ‘pdummy’ set but not used [-Wunused-but-set-variable]
 4070 |             unsigned char *pdummy;
      |                            ^~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4107 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4120 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tsprintf.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiargs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbiargs.c:82:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tree.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from tree.c:79:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/matrix.h:44,
                 from matrix.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_socket.c:75:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_socket.c: In function ‘s_GetLocalPort’:
ncbi_socket.c:440:50: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
  440 |     if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0
      |                                                  ^~~~~~~
      |                                                  |
      |                                                  TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_IsConnected_’:
ncbi_socket.c:2572:73: warning: pointer targets in passing argument 5 of ‘getsockopt’ differ in signedness [-Wpointer-sign]
 2572 |         if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len)
      |                                                                         ^~~~
      |                                                                         |
      |                                                                         TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:210:32: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  210 |          socklen_t *__restrict __optlen) __THROW;
      |          ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
ncbi_socket.c: In function ‘s_CreateOnTop’:
ncbi_socket.c:4435:35: warning: pointer targets in passing argument 3 of ‘getpeername’ differ in signedness [-Wpointer-sign]
 4435 |     if (getpeername(fd, &peer.sa, &peerlen) != 0) {
      |                                   ^~~~~~~~
      |                                   |
      |                                   TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:131:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  131 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c:4471:43: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 4471 |             if (getsockname(fd, &peer.sa, &peerlen) != 0)
      |                                           ^~~~~~~~
      |                                           |
      |                                           TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_CreateListening’:
ncbi_socket.c:4865:48: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 4865 |         error = getsockname(x_lsock, &addr.sa, &addrlen) != 0
      |                                                ^~~~~~~~
      |                                                |
      |                                                TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_Accept’:
ncbi_socket.c:5105:49: warning: pointer targets in passing argument 3 of ‘accept’ differ in signedness [-Wpointer-sign]
 5105 |     if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) {
      |                                                 ^~~~~~~~
      |                                                 |
      |                                                 TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:233:28: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  233 |      socklen_t *__restrict __addr_len);
      |      ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
ncbi_socket.c: In function ‘s_RecvMsg’:
ncbi_socket.c:5409:52: warning: pointer targets in passing argument 6 of ‘recvfrom’ differ in signedness [-Wpointer-sign]
 5409 |                           (struct sockaddr*) &sin, &sinlen);
      |                                                    ^~~~~~~
      |                                                    |
      |                                                    TSOCK_socklen_t * {aka int *}
In file included from /usr/i686-linux-gnu/include/sys/socket.h:269,
                 from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/bits/socket2.h:65:49: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
   65 |    __SOCKADDR_ARG __addr, socklen_t *__restrict __addr_len)
      |                           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
ncbi_socket.c: In function ‘TRIGGER_Create’:
ncbi_socket.c:5661:18: warning: unused variable ‘x_id’ [-Wunused-variable]
 5661 |     unsigned int x_id = ++s_ID_Counter;
      |                  ^~~~
ncbi_socket.c: In function ‘DSOCK_Bind’:
ncbi_socket.c:7390:51: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 7390 |         error = getsockname(sock->sock, &addr.sa, &addrlen) != 0
      |                                                   ^~~~~~~~
      |                                                   |
      |                                                   TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_buffer.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_types.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_core.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_core_c.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_util.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_util.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_priv.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ansi_ext.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_connection.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_connector.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_connutil.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_file_connector.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_heapmgr.c:115:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_http_connector.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_http_connector.c: In function ‘x_Authenticate’:
ncbi_http_connector.c:220:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
  220 |     s[userlen++] = ':';
      |     ~~~~~~~~~~~~~^~~~~
ncbi_http_connector.c:174:10: note: at offset -1 to object ‘buf’ with size 336 declared here
  174 |     char buf[80+sizeof(uuu->net_info->user)*4], *s;
      |          ^~~
ncbi_http_connector.c:220:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
  220 |     s[userlen++] = ':';
      |     ~~~~~~~~~~~~~^~~~~
ncbi_http_connector.c:174:10: note: at offset -1 to object ‘buf’ with size 336 declared here
  174 |     char buf[80+sizeof(uuu->net_info->user)*4], *s;
      |          ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_server_info.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_service.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_version.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_version.h:37,
                 from ncbi_version.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_service_connector.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ftp_connector.c:49:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_dispd.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_local.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_local.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_socket_connector.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urlquery.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from urlquery.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF binary.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/binary.h:60,
                 from binary.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_sendmail.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn_connection.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbos.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_lbos.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’:
ncbi_lbos.c:756:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  756 |     if (s_LBOS_Lbosresolver == NULL)
      |     ^~
ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  759 |         s_LBOS_Lbosresolver = strdup(str + 7);
      |         ^~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF parson.c
parson.c: In function ‘remove_comments’:
parson.c:281:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  281 |             for (i = 0; i < (ptr - string) + end_token_len; i++)
      |             ^~~
parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  283 |            string = ptr + end_token_len - 1;
      |            ^~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from parson.c:32:
In function ‘strncpy’,
    inlined from ‘parson_strndup’ at parson.c:135:5,
    inlined from ‘parson_strdup’ at parson.c:140:12,
    inlined from ‘x_json_object_add’ at parson.c:318:28:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
parson.c: In function ‘x_json_object_add’:
parson.c:140:12: note: length computed here
  140 |     return parson_strndup(string, strlen(string));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from parson.c:32:
In function ‘strncpy’,
    inlined from ‘parson_strndup’ at parson.c:135:5,
    inlined from ‘x_json_value_init_string’ at parson.c:1104:12:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
parson.c: In function ‘x_json_value_init_string’:
parson.c:1101:18: note: length computed here
 1101 |     string_len = strlen(string);
      |                  ^~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from parson.c:32:
In function ‘strncpy’,
    inlined from ‘parson_strndup’ at parson.c:135:5,
    inlined from ‘parson_strdup’ at parson.c:140:12,
    inlined from ‘x_json_parse_string_with_comments’ at parson.c:913:27:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
parson.c: In function ‘x_json_parse_string_with_comments’:
parson.c:140:12: note: length computed here
  140 |     return parson_strndup(string, strlen(string));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from parson.c:32:
In function ‘strncpy’,
    inlined from ‘parson_strndup’ at parson.c:135:5,
    inlined from ‘parson_strdup’ at parson.c:140:12,
    inlined from ‘x_json_value_deep_copy’ at parson.c:1195:32:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
parson.c: In function ‘x_json_value_deep_copy’:
parson.c:140:12: note: length computed here
  140 |     return parson_strndup(string, strlen(string));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ipv6.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ipv6.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnflpt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnflpt.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnfspc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnfspc.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnmfls.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnmfls.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rm -f libncbi.a
ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o ncbi_lbos.o parson.o ncbi_ipv6.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbi.a ../lib
ranlib ../lib/libncbi.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_LIBGNUTLS ncbi_gnutls.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_gnutls.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_gnutls.c: In function ‘s_GnuTlsCreate’:
ncbi_gnutls.c:293:5: warning: ‘gnutls_connection_end_t’ is deprecated [-Wdeprecated-declarations]
  293 |     gnutls_connection_end_t end = (side == eSOCK_Client
      |     ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ncbi_gnutls.c:35:
ncbi_gnutls.c: In function ‘s_GnuTlsInit’:
ncbi_priv.h:217:33: warning: ‘version’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  217 |             _mess.message     = NcbiMessagePlusError(&_mess.dynamic,    \
      |                                 ^~~~~~~~~~~~~~~~~~~~
ncbi_gnutls.c:582:17: note: ‘version’ was declared here
  582 |     const char* version;
      |                 ^~~~~~~
rm -f libconnssl.a
ar cru libconnssl.a ncbi_gnutls.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libconnssl.a ../lib
ranlib ../lib/libconnssl.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objacces.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnacces.h:9,
                 from objacces.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objacces.c: In function ‘LinkSetAsnWrite’:
objacces.c:140:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  140 |     if (atp == NULL)
      |     ^~
objacces.c:143:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  143 |  if (lsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objacces.c: In function ‘LinkSetAsnRead’:
objacces.c:216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  216 |     if (atp == NULL)
      |     ^~
objacces.c:219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  219 |  lsp = LinkSetNew();
      |  ^~~
objacces.c:220:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  220 |     if (lsp == NULL)
      |     ^~
objacces.c:223:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  223 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objacces.c:226:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  226 |     if (atp == NULL)
      |     ^~
objacces.c:228:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  228 |  if (AsnReadVal(aip, atp, &av) <= 0)     /* get the num */
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objalign.h:103,
                 from objalign.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objalign.c: In function ‘CommonSeqAlignLabelFunc’:
objalign.c:135:27: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
  135 |  CharPtr curr, typelabel, tmp;
      |                           ^~~
objalign.c: In function ‘SeqAlignAsnRead’:
objalign.c:597:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  597 |     if (atp == NULL)
      |     ^~
objalign.c:600:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  600 |  sap = SeqAlignNew();
      |  ^~~
objalign.c:601:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  601 |     if (sap == NULL)
      |     ^~
objalign.c:604:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  604 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘DenseDiagAsnWrite’:
objalign.c:1020:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1020 |     if (atp == NULL)
      |     ^~
objalign.c:1023:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1023 |  if (ddp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c: In function ‘DenseDiagAsnRead’:
objalign.c:1112:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1112 |     if (atp == NULL)
      |     ^~
objalign.c:1115:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1115 |  ddp = DenseDiagNew();
      |  ^~~
objalign.c:1116:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1116 |     if (ddp == NULL)
      |     ^~
objalign.c:1119:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1119 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘DenseSegAsnWrite’:
objalign.c:1268:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1268 |     if (atp == NULL)
      |     ^~
objalign.c:1271:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1271 |  if (dsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c: In function ‘DenseSegAsnRead’:
objalign.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1374 |     if (atp == NULL)
      |     ^~
objalign.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1377 |  dsp = DenseSegNew();
      |  ^~~
objalign.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1378 |     if (dsp == NULL)
      |     ^~
objalign.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1381 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘StdSegAsnWrite’:
objalign.c:1559:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1559 |     if (atp == NULL)
      |     ^~
objalign.c:1562:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1562 |  if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c:1581:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1581 |     if (! SeqLocSetAsnWrite(ssp->loc, aip, STD_SEG_loc, STD_SEG_loc_E))
      |     ^~
objalign.c:1584:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1584 |  if (ssp->scores != NULL)
      |  ^~
objalign.c: In function ‘StdSegAsnRead’:
objalign.c:1626:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1626 |     if (atp == NULL)
      |     ^~
objalign.c:1629:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1629 |  ssp = StdSegNew();
      |  ^~~
objalign.c:1630:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1630 |     if (ssp == NULL)
      |     ^~
objalign.c:1633:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1633 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘SeqAlignSetAsnWrite’:
objalign.c:1704:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1704 |     if (atp == NULL)
      |     ^~
objalign.c:1708:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1708 |  oldsap = sap;
      |  ^~~~~~
objalign.c: In function ‘PackSegAsnWrite’:
objalign.c:1892:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1892 |     if (atp == NULL)
      |     ^~
objalign.c:1895:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1895 |  if (psp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c:1926:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1926 |     if (! AsnCloseStruct(aip, PACKED_SEG_starts, (Pointer)psp->starts))
      |     ^~
objalign.c:1929:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1929 |  av.ptrvalue = psp->present;
      |  ^~
objalign.c: In function ‘PackSegAsnRead’:
objalign.c:1999:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1999 |     if (atp == NULL)
      |     ^~
objalign.c:2002:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2002 |  psp = PackSegNew();
      |  ^~~
objalign.c:2003:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2003 |     if (psp == NULL)
      |     ^~
objalign.c:2006:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2006 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘SplicedSegAsnRead’:
objalign.c:2179:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2179 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseSegAsnRead’:
objalign.c:2422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2422 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedExonAsnRead’:
objalign.c:2614:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2614 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedSegModifierFree’:
objalign.c:2875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2875 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘ProductPosFree’:
objalign.c:3050:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3050 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘SplicedExonChunkFree’:
objalign.c:3225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3225 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘SpliceSiteAsnRead’:
objalign.c:3469:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3469 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘ProtPosAsnRead’:
objalign.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3626 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseAlignAsnRead’:
objalign.c:3798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3798 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseSegExtAsnRead’:
objalign.c:4020:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4020 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedSegModifierAsnRead’:
objalign.c:2955:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2955 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalign.c: In function ‘SplicedExonChunkAsnRead’:
objalign.c:3326:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3326 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalign.c: In function ‘ProductPosAsnRead’:
objalign.c:3130:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3130 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objall.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objall.h:64,
                 from objall.c:63:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objbibli.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnbibli.h:9,
                 from objbibli.c:113:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objbibli.c: In function ‘AffilAsnRead’:
objbibli.c:208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  208 |     if (atp == NULL)
      |     ^~
objbibli.c:211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  211 |  afp = AffilNew();
      |  ^~~
objbibli.c: In function ‘AffilAsnWrite’:
objbibli.c:296:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  296 |     if (atp == NULL)
      |     ^~
objbibli.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  299 |  if (afp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘AuthListFree’:
objbibli.c:458:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  458 |     if (alp->affil != NULL)
      |     ^~
objbibli.c:460:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  460 |  return (AuthListPtr)MemFree(alp);
      |  ^~~~~~
objbibli.c: In function ‘AuthListAsnRead’:
objbibli.c:489:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  489 |     if (atp == NULL)
      |     ^~
objbibli.c:492:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  492 |  alp = AuthListNew();
      |  ^~~
objbibli.c: In function ‘AuthListAsnWrite’:
objbibli.c:583:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  583 |     if (atp == NULL)
      |     ^~
objbibli.c:586:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  586 |  if (alp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:590:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  590 |     if (! AsnOpenStruct(aip, atp, (Pointer)alp))   /* open AuthList SEQUENCE */
      |     ^~
objbibli.c:593:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  593 |  av.ptrvalue = alp->names;
      |  ^~
objbibli.c: In function ‘AuthorFree’:
objbibli.c:677:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  677 |     if (ap->affil != NULL)
      |     ^~
objbibli.c:679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  679 |  return (AuthorPtr)MemFree(ap);
      |  ^~~~~~
objbibli.c: In function ‘AuthorAsnRead’:
objbibli.c:707:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  707 |     if (atp == NULL)
      |     ^~
objbibli.c:710:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  710 |  ap = AuthorNew();
      |  ^~
objbibli.c: In function ‘AuthorAsnWrite’:
objbibli.c:779:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  779 |     if (atp == NULL)
      |     ^~
objbibli.c:782:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  782 |  if (ap == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitArtAsnRead’:
objbibli.c:925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  925 |     if (atp == NULL)
      |     ^~
objbibli.c:928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  928 |  cap = CitArtNew();
      |  ^~~
objbibli.c: In function ‘CitArtAsnWrite’:
objbibli.c:1027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1027 |     if (atp == NULL)
      |     ^~
objbibli.c:1030:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1030 |  if (cap == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1034:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1034 |     if (! AsnOpenStruct(aip, atp, (Pointer)cap))  /* open the SEQUENCE */
      |     ^~
objbibli.c:1037:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1037 |  if (cap->title != NULL)
      |  ^~
objbibli.c: In function ‘ImprintAsnRead’:
objbibli.c:1152:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1152 |     if (atp == NULL)
      |     ^~
objbibli.c:1155:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1155 |  ip = ImprintNew();
      |  ^~
objbibli.c: In function ‘ImprintAsnWrite’:
objbibli.c:1251:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1251 |     if (atp == NULL)
      |     ^~
objbibli.c:1254:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1254 |  if (ip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitRetractAsnRead’:
objbibli.c:1391:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1391 |     if (atp == NULL)
      |     ^~
objbibli.c:1394:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1394 |  crp = CitRetractNew();
      |  ^~~
objbibli.c: In function ‘CitRetractAsnWrite’:
objbibli.c:1445:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1445 |     if (atp == NULL)
      |     ^~
objbibli.c:1448:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1448 |  if (crp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitJourAsnRead’:
objbibli.c:1524:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1524 |     if (atp == NULL)
      |     ^~
objbibli.c:1527:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1527 |  cjp = CitJourNew();
      |  ^~~
objbibli.c: In function ‘CitJourAsnWrite’:
objbibli.c:1576:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1576 |     if (atp == NULL)
      |     ^~
objbibli.c:1579:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1579 |  if (cjp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1585:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1585 |     if (! ImprintAsnWrite(cjp->imp, aip, CIT_JOUR_imp))
      |     ^~
objbibli.c:1587:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1587 |     if (! AsnCloseStruct(aip, atp, (Pointer)cjp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitBookAsnRead’:
objbibli.c:1676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1676 |     if (atp == NULL)
      |     ^~
objbibli.c:1679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1679 |  cbp = CitBookNew();
      |  ^~~
objbibli.c: In function ‘CitBookAsnWrite’:
objbibli.c:1744:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1744 |     if (atp == NULL)
      |     ^~
objbibli.c:1747:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1747 |  if (cbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1760:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1760 |     if (! ImprintAsnWrite(cbp->imp, aip, CIT_BOOK_imp))
      |     ^~
objbibli.c:1762:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1762 |     if (! AsnCloseStruct(aip, atp, (Pointer)cbp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitProcAsnWrite’:
objbibli.c:1879:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1879 |     if (atp == NULL)
      |     ^~
objbibli.c:1882:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1882 |  if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1901 |     if (! AsnCloseStruct(aip, CIT_PROC_meet, (Pointer)cpp->otherdata))
      |     ^~
objbibli.c:1903:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1903 |     if (! AsnCloseStruct(aip, atp, (Pointer)cpp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitLetAsnWrite’:
objbibli.c:1995:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1995 |     if (atp == NULL)
      |     ^~
objbibli.c:1998:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1998 |  if (clp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitPatAsnRead’:
objbibli.c:2091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2091 |     if (atp == NULL)
      |     ^~
objbibli.c:2094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2094 |  cpp = CitPatNew();
      |  ^~~
objbibli.c: In function ‘CitPatAsnWrite’:
objbibli.c:2213:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2213 |     if (atp == NULL)
      |     ^~
objbibli.c:2216:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2216 |  if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘IdPatAsnRead’:
objbibli.c:2346:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2346 |     if (atp == NULL)
      |     ^~
objbibli.c:2349:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2349 |  idp = IdPatNew();
      |  ^~~
objbibli.c: In function ‘IdPatAsnWrite’:
objbibli.c:2412:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2412 |     if (atp == NULL)
      |     ^~
objbibli.c:2415:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2415 |  if (idp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitGenAsnRead’:
objbibli.c:2546:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2546 |     if (atp == NULL)
      |     ^~
objbibli.c:2549:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2549 |  cgp = CitGenNew();
      |  ^~~
objbibli.c: In function ‘CitGenAsnWrite’:
objbibli.c:2627:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2627 |     if (atp == NULL)
      |     ^~
objbibli.c:2630:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2630 |  if (cgp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘TitleAsnWrite’:
objbibli.c:2825:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2825 |     if (atp == NULL)
      |     ^~
objbibli.c:2828:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2828 |  if (tp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitSubFree’:
objbibli.c:2909:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2909 |     if (csp == NULL)
      |     ^~
objbibli.c:2912:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2912 |  AuthListFree(csp->authors);
      |  ^~~~~~~~~~~~
objbibli.c: In function ‘CitSubAsnRead’:
objbibli.c:2943:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2943 |     if (atp == NULL)
      |     ^~
objbibli.c:2946:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2946 |  csp = CitSubNew();
      |  ^~~
objbibli.c:2958:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2958 |     if (atp == NULL)
      |     ^~
objbibli.c:2961:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2961 |  if (atp == CIT_SUB_imp)
      |  ^~
objbibli.c: In function ‘CitSubAsnWrite’:
objbibli.c:3029:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3029 |     if (atp == NULL)
      |     ^~
objbibli.c:3032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3032 |  if (csp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:3038:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3038 |     if (! AuthListAsnWrite(csp->authors, aip, CIT_SUB_authors))
      |     ^~
objbibli.c:3041:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3041 |  if (csp->imp != NULL)
      |  ^~
objbibli.c: In function ‘PatPrioritySetAsnRead’:
objbibli.c:3694:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3694 |      if (ppp == NULL)
      |      ^~
objbibli.c:3697:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3697 |   if (head == NULL)
      |   ^~
objbibli.c:3715:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3715 |      if (atp == NULL)
      |      ^~
objbibli.c:3717:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3717 |   ppp->date = DateAsnRead(aip, atp);
      |   ^~~
objbibli.c: In function ‘PatPrioritySetAsnWrite’:
objbibli.c:3755:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3755 |     if (! AsnOpenStruct(aip, set, (Pointer)ppp))  /* open the SEQUENCE OF */
      |     ^~
objbibli.c:3758:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3758 |  for (tmp = ppp; tmp != NULL; tmp = tmp->next)
      |  ^~~
objbibli.c: In function ‘ArticleIdAsnRead’:
objbibli.c:3849:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3849 |     if (atp == NULL)
      |     ^~
objbibli.c:3852:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3852 |  aidp = ArticleIdNew();
      |  ^~~~
objbibli.c: In function ‘ArticleIdAsnWrite’:
objbibli.c:3925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3925 |     if (atp == NULL)
      |     ^~
objbibli.c:3928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3928 |  if (aidp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘PubStatusDateAsnRead’:
objbibli.c:4039:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4039 |     if (atp == NULL)
      |     ^~
objbibli.c:4042:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4042 |  psdp = PubStatusDateNew();
      |  ^~~~
objbibli.c: In function ‘PubStatusDateAsnWrite’:
objbibli.c:4091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4091 |     if (atp == NULL)
      |     ^~
objbibli.c:4094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4094 |  if (psdp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfeat.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objfeat.h:48,
                 from objfeat.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objfeat.c: In function ‘ModelEvidenceSupportAsnRead’:
objfeat.c:1500:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1500 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ExperimentSupportAsnRead’:
objfeat.c:1748:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1748 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ProgramIdAsnRead’:
objfeat.c:1933:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1933 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘EvidenceBasisAsnRead’:
objfeat.c:2103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2103 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘InferenceSupportAsnRead’:
objfeat.c:2267:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2267 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ModelEvidenceItemAsnRead’:
objfeat.c:2483:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2483 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SeqFeatSupportAsnRead’:
objfeat.c:2688:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2688 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAQualAsnRead’:
objfeat.c:4244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4244 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAQualSetAsnRead’:
objfeat.c:4396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4396 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAGenAsnRead’:
objfeat.c:4524:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4524 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘GeneNomenclatureAsnRead’:
objfeat.c:4707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4707 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘OrgNameMatch’:
objfeat.c:5957:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
 5957 |            || onp2->mgcode != onp2->mgcode
      |                            ^~
objfeat.c: In function ‘TaxElementAsnWrite’:
objfeat.c:7399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 7399 |     if (! AsnOpenStruct(aip, atp, (Pointer)tep))
      |     ^~
objfeat.c:7402:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 7402 |         av.intvalue = (Int4)(tep->fixed_level);
      |         ^~
objfeat.c: In function ‘PCRPrimerAsnRead’:
objfeat.c:8276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8276 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRPrimerSetAsnRead’:
objfeat.c:8421:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8421 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRReactionAsnRead’:
objfeat.c:8542:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8542 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRReactionSetAsnRead’:
objfeat.c:8685:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8685 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneRefAsnRead’:
objfeat.c:8812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8812 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneSeqSetAsnRead’:
objfeat.c:9005:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9005 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneSeqAsnRead’:
objfeat.c:9135:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9135 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SomaticOriginAsnRead’:
objfeat.c:9487:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9487 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SomaticOriginConditionAsnRead’:
objfeat.c:9566:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9566 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘VariationRefAsnRead’:
objfeat.c:9645:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9645 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_loss_of_heterozygosityAsnRead’:
objfeat.c:10687:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10687 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_frameshiftAsnRead’:
objfeat.c:10765:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10765 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘VarRefDataFree’:
objfeat.c:10865:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
10865 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘VarRefDataSetAsnRead’:
objfeat.c:10918:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10918 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_elementFree’:
objfeat.c:11112:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
11112 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘VariationInstAsnRead’:
objfeat.c:11241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11241 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: At top level:
objfeat.c:11393:1: warning: "/*" within comment [-Wcomment]
11393 | /**************************************************
      |  
objfeat.c: In function ‘VariantPropertiesAsnRead’:
objfeat.c:11422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11422 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PhenotypeAsnRead’:
objfeat.c:11746:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11746 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PopulationDataAsnRead’:
objfeat.c:11945:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11945 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ExtLocAsnRead’:
objfeat.c:12161:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12161 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Seq_seqFree’:
objfeat.c:12327:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12327 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘DeltaItemAsnRead’:
objfeat.c:12360:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12360 |    AsnReadFunc func;
      |                ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asngen.h:9,
                 from objgen.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objgen.c: In function ‘DateClean’:
objgen.c:161:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  161 |     if (dp == NULL)
      |     ^~
objgen.c:164:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  164 |  memset(dp, 0, sizeof(NCBI_Date));
      |  ^~~~~~
objgen.c: In function ‘DateAsnWrite’:
objgen.c:399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  399 |     if (atp == NULL)
      |     ^~
objgen.c:402:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  402 |  if (dp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘DateAsnRead’:
objgen.c:494:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  494 |     if (atp == NULL)
      |     ^~
objgen.c:497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  497 |  dp = DateNew();
      |  ^~
objgen.c:498:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  498 |     if (dp == NULL)
      |     ^~
objgen.c:501:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  501 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE value (nothing) */
      |  ^~
objgen.c: In function ‘DbtagFree’:
objgen.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  752 |     if (dbt == NULL)
      |     ^~
objgen.c:755:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  755 |  dbt->tag = ObjectIdFree(dbt->tag);
      |  ^~~
objgen.c: In function ‘DbtagAsnRead’:
objgen.c:784:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  784 |     if (atp == NULL)
      |     ^~
objgen.c:787:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  787 |  dbt = DbtagNew();
      |  ^~~
objgen.c:788:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  788 |     if (dbt == NULL)
      |     ^~
objgen.c:791:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  791 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the START_STRUCT */
      |  ^~
objgen.c:799:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  799 |     if (dbt->tag == NULL)
      |     ^~
objgen.c:802:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  802 |  atp = AsnReadId(aip, amp, atp); if (atp == NULL) goto erret;   /* END_STRUCT */
      |  ^~~
objgen.c: In function ‘DbtagAsnWrite’:
objgen.c:833:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  833 |     if (atp == NULL)
      |     ^~
objgen.c:836:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  836 |  if (dbt == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘ObjectIdAsnRead’:
objgen.c:980:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  980 |     if (atp == NULL)
      |     ^~
objgen.c:983:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  983 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE value (nothing) */
      |  ^~
objgen.c:989:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  989 |     if (oid == NULL)
      |     ^~
objgen.c:991:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  991 |  if (atp == OBJECT_ID_id)
      |  ^~
objgen.c: In function ‘ObjectIdAsnWrite’:
objgen.c:1024:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1024 |     if (atp == NULL)
      |     ^~
objgen.c:1027:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1027 |  if (oid == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘NameStdFree’:
objgen.c:1174:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1174 |     if (nsp == NULL)
      |     ^~
objgen.c:1177:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1177 |  for (i = 0; i < 7; i++)
      |  ^~~
objgen.c: In function ‘NameStdAsnRead’:
objgen.c:1208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1208 |     if (atp == NULL)
      |     ^~
objgen.c:1211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1211 |  nsp = NameStdNew();
      |  ^~~
objgen.c:1212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1212 |     if (nsp == NULL)
      |     ^~
objgen.c:1215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1215 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the START_STRUCT */
      |  ^~
objgen.c: In function ‘NameStdAsnWrite’:
objgen.c:1271:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1271 |     if (atp == NULL)
      |     ^~
objgen.c:1274:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1274 |  if (nsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘PersonIdFree’:
objgen.c:1368:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1368 |     if (pid == NULL)
      |     ^~
objgen.c:1371:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1371 |  if (pid->choice == 1)          /* Dbtag */
      |  ^~
objgen.c: In function ‘PersonIdAsnWrite’:
objgen.c:1464:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1464 |     if (atp == NULL)
      |     ^~
objgen.c:1467:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1467 |  if (pid == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘IntFuzzAsnRead’:
objgen.c:1682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1682 |     if (atp == NULL)
      |     ^~
objgen.c:1685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1685 |  ifp = IntFuzzNew();
      |  ^~~
objgen.c:1686:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1686 |     if (ifp == NULL)
      |     ^~
objgen.c:1689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1689 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE (nothing) */
      |  ^~
objgen.c: In function ‘UserFieldAsnRead’:
objgen.c:1944:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1944 |     if (atp == NULL)
      |     ^~
objgen.c:1947:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1947 |  ufp = UserFieldNew();
      |  ^~~
objgen.c: In function ‘UserObjectAsnRead’:
objgen.c:2434:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2434 |     if (atp == NULL)
      |     ^~
objgen.c:2437:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2437 |  uop = UserObjectNew();
      |  ^~~
objgen.c:2438:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2438 |     if (uop == NULL)
      |     ^~
objgen.c:2441:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2441 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objloc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from objloc.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objloc.c: In function ‘SeqIdAsnWrite’:
objloc.c:313:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  313 |     if (atp == NULL)
      |     ^~
objloc.c:316:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  316 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqIdAsnRead’:
objloc.c:443:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  443 |     if (atp == NULL)
      |     ^~
objloc.c:446:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  446 |  anp = ValNodeNew(NULL);
      |  ^~~
objloc.c: In function ‘SeqIdDup’:
objloc.c:587:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  587 |     if (oldid == NULL)
      |     ^~
objloc.c:590:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  590 |  newid = ValNodeNew(NULL);
      |  ^~~~~
objloc.c: In function ‘SeqIdSetAsnRead’:
objloc.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  752 |     if (AsnReadVal(aip, atp, &av) <= 0)    /* end struct */
      |     ^~
objloc.c:754:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  754 |  if (first == NULL)
      |  ^~
objloc.c: In function ‘SeqIdSetAsnWrite’:
objloc.c:786:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  786 |     if (atp2 == NULL)
      |     ^~
objloc.c:789:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  789 |  if (anp == NULL) { AsnNullValueMsg(aip, settype); goto erret; }
      |  ^~
objloc.c: In function ‘TextSeqIdAsnWrite’:
objloc.c:864:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  864 |     if (atp == NULL)
      |     ^~
objloc.c:867:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  867 |  if (tsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘TextSeqIdAsnRead’:
objloc.c:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (atp == NULL)
      |     ^~
objloc.c:937:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  937 |  tsip = TextSeqIdNew();
      |  ^~~~
objloc.c:938:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  938 |     if (tsip == NULL)
      |     ^~
objloc.c:941:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  941 |  if ((AsnReadVal(aip, oldtype, &av)) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PatentSeqIdAsnWrite’:
objloc.c:1018:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1018 |     if (atp == NULL)
      |     ^~
objloc.c:1021:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1021 |  if (psip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PatentSeqIdAsnRead’:
objloc.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1068 |     if (atp == NULL)
      |     ^~
objloc.c:1071:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1071 |  psip = PatentSeqIdNew();
      |  ^~~~
objloc.c:1072:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1072 |     if (psip == NULL)
      |     ^~
objloc.c:1075:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1075 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘GiimAsnWrite’:
objloc.c:1151:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1151 |     if (atp == NULL)
      |     ^~
objloc.c:1154:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1154 |  if (gip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘GiimAsnRead’:
objloc.c:1216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1216 |     if (gip == NULL)
      |     ^~
objloc.c:1219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1219 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PDBSeqIdAsnWrite’:
objloc.c:1305:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1305 |     if (atp == NULL)
      |     ^~
objloc.c:1308:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1308 |  if (pdbsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PDBSeqIdAsnRead’:
objloc.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1374 |     if (atp == NULL)
      |     ^~
objloc.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1377 |  pdbsip = PDBSeqIdNew();
      |  ^~~~~~
objloc.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1378 |     if (pdbsip == NULL)
      |     ^~
objloc.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1381 |  if ((AsnReadVal(aip, oldtype, &av)) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘SeqLocAsnWrite’:
objloc.c:1528:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1528 |     if (atp == NULL)
      |     ^~
objloc.c:1531:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1531 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocAsnRead’:
objloc.c:1624:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1624 |     if (atp == NULL)
      |     ^~
objloc.c:1627:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1627 |  anp = ValNodeNew(NULL);
      |  ^~~
objloc.c:1628:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1628 |     if (anp == NULL)
      |     ^~
objloc.c:1631:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1631 |  if (AsnReadVal(aip, atp, &av) <= 0)  /* read the CHOICE value (nothing) */
      |  ^~
objloc.c: In function ‘SeqLocMixAsnWrite’:
objloc.c:1738:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1738 |     if (atp == NULL)
      |     ^~
objloc.c:1741:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1741 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocEquivAsnWrite’:
objloc.c:1805:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1805 |     if (atp == NULL)
      |     ^~
objloc.c:1808:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1808 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocSetAsnWrite’:
objloc.c:1873:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1873 |     if (atp2 == NULL)
      |     ^~
objloc.c:1876:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1876 |  if (anp == NULL) { AsnNullValueMsg(aip, set); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocSetAsnRead’:
objloc.c:1940:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1940 |     if (AsnReadVal(aip, atp, &av) <= 0)      /* read END_STRUCT */
      |     ^~
objloc.c:1942:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1942 |  if (first == NULL)
      |  ^~
objloc.c: In function ‘SeqIntAsnWrite’:
objloc.c:2022:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2022 |     if (atp == NULL)
      |     ^~
objloc.c:2025:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2025 |  if (sip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqIntAsnRead’:
objloc.c:2095:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2095 |     if (atp == NULL)
      |     ^~
objloc.c:2098:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2098 |  sip = SeqIntNew();
      |  ^~~
objloc.c:2099:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2099 |     if (sip == NULL)
      |     ^~
objloc.c:2102:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2102 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PackSeqIntAsnWrite’:
objloc.c:2179:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2179 |     if (atp == NULL)
      |     ^~
objloc.c:2181:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2181 |  oldsip = sip;
      |  ^~~~~~
objloc.c:2185:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2185 |     if (! AsnOpenStruct(aip, atp, (Pointer)oldsip))
      |     ^~
objloc.c:2187:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2187 |  for ( ;sip != NULL; sip = sip->next)
      |  ^~~
objloc.c: In function ‘SeqPntAsnWrite’:
objloc.c:2309:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2309 |     if (atp == NULL)
      |     ^~
objloc.c:2312:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2312 |  if (spp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqPntAsnRead’:
objloc.c:2374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2374 |     if (atp == NULL)
      |     ^~
objloc.c:2377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2377 |  spp = SeqPntNew();
      |  ^~~
objloc.c:2378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2378 |     if (spp == NULL)
      |     ^~
objloc.c:2381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2381 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PackSeqPntAsnWrite’:
objloc.c:2479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2479 |     if (atp == NULL)
      |     ^~
objloc.c:2482:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2482 |  if (pspp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PackSeqPntAsnRead’:
objloc.c:2553:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2553 |     if (atp == NULL)
      |     ^~
objloc.c:2556:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2556 |  pspp = PackSeqPntNew();
      |  ^~~~
objloc.c:2557:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2557 |     if (pspp == NULL)
      |     ^~
objloc.c:2560:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2560 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘SeqBondAsnWrite’:
objloc.c:2724:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2724 |     if (atp == NULL)
      |     ^~
objloc.c:2727:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2727 |  if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqBondAsnRead’:
objloc.c:2776:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2776 |     if (atp == NULL)
      |     ^~
objloc.c:2779:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2779 |  sbp = SeqBondNew();
      |  ^~~
objloc.c:2780:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2780 |     if (sbp == NULL)
      |     ^~
objloc.c:2783:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2783 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmedli.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from objmedli.c:104:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmedli.c: In function ‘MedlineMeshAsnRead’:
objmedli.c:248:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  248 |     if (atp == NULL)
      |     ^~
objmedli.c:251:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  251 |  mmp = MedlineMeshNew();
      |  ^~~
objmedli.c: In function ‘DocRefFree’:
objmedli.c:1190:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1190 |     if (drp == NULL)
      |     ^~
objmedli.c:1193:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1193 |  return (DocRefPtr)MemFree(drp);
      |  ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpub.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objpub.h:70,
                 from objpub.c:125:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objpub.c: In function ‘PubSetAsnRead’:
objpub.c:831:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  831 |     if (AsnReadVal(aip, settype, &av) <= 0)    /* read START_STRUCT */
      |     ^~
objpub.c:834:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  834 |  if (settype == PUB_SET_pub)
      |  ^~
objpub.c:901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  901 |     if (AsnReadVal(aip, settype, &av) <= 0)   /* read END_STRUCT for SET OF */
      |     ^~
objpub.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |  if (anp == NULL)
      |  ^~
objpub.c: In function ‘PubLabelUnique’:
objpub.c:1360:17: warning: unused variable ‘pmid’ [-Wunused-variable]
 1360 |  Int4 muid = 0, pmid = 0;
      |                 ^~~~
objpub.c:1360:7: warning: unused variable ‘muid’ [-Wunused-variable]
 1360 |  Int4 muid = 0, pmid = 0;
      |       ^~~~
objpub.c: In function ‘PubSetAsnRead’:
objpub.c:876:16: warning: ‘func’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  876 |         pnt = (* func)(aip, atp);
      |               ~^~~~~~~~~~~~~~~~~
objpub.c:887:25: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  887 |             cit->choice = choice;
      |             ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objres.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from objres.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objscoremat.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objscoremat.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objscoremat.c: In function ‘PssmAsnRead’:
objscoremat.c:93:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   93 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmIntermediateDataAsnRead’:
objscoremat.c:339:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  339 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmFinalDataAsnRead’:
objscoremat.c:548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  548 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmParametersAsnRead’:
objscoremat.c:766:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  766 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmWithParametersAsnRead’:
objscoremat.c:946:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  946 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘BlockPropertyAsnRead’:
objscoremat.c:1113:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1113 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘CoreBlockAsnRead’:
objscoremat.c:1289:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1289 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘LoopConstraintAsnRead’:
objscoremat.c:1480:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1480 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘CoreDefAsnRead’:
objscoremat.c:1646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1646 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘FormatRpsDbParametersAsnRead’:
objscoremat.c:1817:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1817 |    AsnReadFunc func;
      |                ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from objseq.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objseq.c: In function ‘LinkageEvidenceAsnRead’:
objseq.c:1609:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1609 |    AsnReadFunc func;
      |                ^~~~
objseq.c: In function ‘SeqGapAsnRead’:
objseq.c:1764:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1764 |    AsnReadFunc func;
      |                ^~~~
objseq.c: In function ‘SeqDescrAsnWriteExtra’:
objseq.c:2035:48: warning: variable ‘had_anp’ set but not used [-Wunused-but-set-variable]
 2035 |     Boolean retval = FALSE, had_extra = FALSE, had_anp = FALSE;
      |                                                ^~~~~~~
objseq.c: In function ‘AnnotIdAsnWrite’:
objseq.c:4841:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 4841 |         else
      |         ^~~~
objseq.c:4843:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 4843 |             break;
      |             ^~~~~
objseq.c:4849:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 4849 |         else
      |         ^~~~
objseq.c:4851:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 4851 |             break;
      |             ^~~~~
objseq.c: In function ‘AnnotDescAsnWrite’:
objseq.c:5226:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 5226 |         else
      |         ^~~~
objseq.c:5228:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 5228 |            break;
      |            ^~~~~
objseq.c: In function ‘BioseqAsnRead’:
objseq.c:977:21: warning: ‘osp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  977 |         else if (osp->load_by_id)   /* don't load it */
      |                  ~~~^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objblock.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objblock.h:70,
                 from objblock.c:74:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objblock.c: In function ‘EMBLBlockFree’:
objblock.c:900:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  900 |     if (ebp == NULL)
      |     ^~
objblock.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |  DateFree(ebp->creation_date);
      |  ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcode.c
objcode.c:48:51: warning: "/*" within comment [-Wcomment]
   48 | * environment variables to allow reading from data/*.val, replaced tabs in source code with spaces
      |                                                    
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objcode.h:64,
                 from objcode.c:105:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsset.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from objsset.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objsset.c: In function ‘BioseqSetFree’:
objsset.c:363:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  363 |     if (bsp == NULL)
      |     ^~
objsset.c:366:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  366 |  if (bsp->idx.parentptr == NULL || bsp->idx.parenttype == OBJ_SEQSUB) {
      |  ^~
objsset.c: In function ‘SeqEntryFree’:
objsset.c:878:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     else if (sep->choice == 2)
      |          ^~
objsset.c:881:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  881 |  return (SeqEntryPtr)MemFree(sep);
      |  ^~~~~~
objsset.c: In function ‘SeqEntryFreeComponents’:
objsset.c:898:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  898 |     else if (sep->choice == 2)
      |          ^~
objsset.c:901:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  901 |  return sep;
      |  ^~~~~~
objsset.c: In function ‘SeqEntryAsnGet’:
objsset.c:1075:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1075 |     if (retcode == 1)   /* just after a Bioseq */
      |     ^~
objsset.c:1077:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1077 |  av.ptrvalue = (Pointer) osp;
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsub.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnsubmt.h:9,
                 from objsub.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objsub.c: In function ‘SubmitAsnLoad’:
objsub.c:341:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  341 |     if (loaded)
      |     ^~
objsub.c:344:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  344 |  if (! SeqSetAsnLoad ())
      |  ^~
objsub.c:347:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  347 |     if (AsnLoad())
      |     ^~
objsub.c:350:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  350 |  ObjMgrTypeLoad(OBJ_SEQSUB, "Seq-submit", seqsubtypename, "Sequence Data Submission",
      |  ^~~~~~~~~~~~~~
objsub.c: In function ‘SeqSubmitAsnWrite’:
objsub.c:455:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  455 |     if (atp == NULL)
      |     ^~
objsub.c:458:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  458 |  if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:462:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  462 |     if (! AsnOpenStruct(aip, atp, (Pointer)ssp))
      |     ^~
objsub.c:465:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  465 |  if (! SubmitBlockAsnWrite(ssp->sub, aip, SEQ_SUBMIT_sub)) goto erret;
      |  ^~
objsub.c: In function ‘SeqSubmitAsnRead’:
objsub.c:539:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  539 |     if (atp == NULL)
      |     ^~
objsub.c:542:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  542 |  ssp = SeqSubmitNew();
      |  ^~~
objsub.c:543:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  543 |     if (ssp == NULL)
      |     ^~
objsub.c:546:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  546 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objsub.c: In function ‘SubmitBlockAsnWrite’:
objsub.c:682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  682 |     if (atp == NULL)
      |     ^~
objsub.c:685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  685 |  if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:689:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  689 |     if (! AsnOpenStruct(aip, atp, (Pointer)sbp))
      |     ^~
objsub.c:692:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  692 |  if (! ContactInfoAsnWrite(sbp->contact, aip, SUBMIT_BLOCK_contact))
      |  ^~
objsub.c: In function ‘SubmitBlockAsnRead’:
objsub.c:770:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  770 |     if (atp == NULL)
      |     ^~
objsub.c:773:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  773 |  oldatp = atp;
      |  ^~~~~~
objsub.c:775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  775 |     if (sbp == NULL)
      |     ^~
objsub.c:778:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  778 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objsub.c: In function ‘ContactInfoAsnWrite’:
objsub.c:942:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  942 |     if (atp == NULL)
      |     ^~
objsub.c:945:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  945 |  if (cip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:949:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  949 |     if (! AsnOpenStruct(aip, atp, (Pointer)cip))
      |     ^~
objsub.c:952:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  952 |  if (cip->name != NULL)
      |  ^~
objsub.c: In function ‘ContactInfoAsnRead’:
objsub.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1068 |     if (atp == NULL)
      |     ^~
objsub.c:1070:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1070 |  oldatp = atp;
      |  ^~~~~~
objsub.c:1073:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1073 |     if (cip == NULL)
      |     ^~
objsub.c:1076:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1076 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objprt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from objprt.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objprt.c: In function ‘PrintFormBooleanAsnRead’:
objprt.c:892:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  892 |  ptr=PrintFormBooleanFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormEnumAsnRead’:
objprt.c:1010:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1010 |  ptr=PrintFormEnumFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormTextAsnRead’:
objprt.c:1119:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1119 |  ptr=PrintFormTextFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormAsnRead’:
objprt.c:600:8: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  600 |  vnp = PrintFormFree(vnp);
      |        ^~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormatAsnRead’:
objprt.c:435:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  435 |  ptr=PrintFormatFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintTemplateAsnRead’:
objprt.c:250:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  250 |  ptr=PrintTemplateFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormBlockAsnRead’:
objprt.c:767:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  767 |  ptr=PrintFormBlockFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘UserFormatAsnRead’:
objprt.c:1231:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1231 |  ptr=UserFormatFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfdef.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objfeat.h:48,
                 from ../include/objfdef.h:48,
                 from objfdef.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalignloc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objalignloc.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objalignloc.c: In function ‘AlignLocSetAsnRead’:
objalignloc.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c: In function ‘Loc_locFree’:
objalignloc.c:196:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  196 |    Pointer pnt;
      |            ^~~
objalignloc.c: In function ‘AlignLocAsnRead’:
objalignloc.c:233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  233 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:232:12: warning: unused variable ‘isError’ [-Wunused-variable]
  232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘Loc_locAsnRead’:
objalignloc.c:313:12: warning: unused variable ‘isError’ [-Wunused-variable]
  313 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignIdFree’:
objalignloc.c:527:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  527 |    Pointer pnt;
      |            ^~~
objalignloc.c: In function ‘AlignIdAsnRead’:
objalignloc.c:559:12: warning: unused variable ‘isError’ [-Wunused-variable]
  559 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignBoxAsnRead’:
objalignloc.c:750:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  750 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:749:12: warning: unused variable ‘isError’ [-Wunused-variable]
  749 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignRowsAsnRead’:
objalignloc.c:932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  932 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:931:12: warning: unused variable ‘isError’ [-Wunused-variable]
  931 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignColumnsAsnRead’:
objalignloc.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1096 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1095 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignIdAsnRead’:
objalignloc.c:615:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  615 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalignloc.c: In function ‘AlignLocAsnRead’:
objalignloc.c:370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  370 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalignloc.c:312:10: note: ‘choice’ was declared here
  312 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtable.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtable.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtable.c: In function ‘SeqTableColumnInfoAsnRead’:
objtable.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objtable.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableColumnAsnRead’:
objtable.c:269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  269 |    AsnReadFunc func;
      |                ^~~~
objtable.c:268:12: warning: unused variable ‘isError’ [-Wunused-variable]
  268 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableAsnRead’:
objtable.c:474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  474 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘CommonStringTableAsnRead’:
objtable.c:657:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  657 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘CommonBytesTableAsnRead’:
objtable.c:819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  819 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘SeqTableSingleDataFree’:
objtable.c:1225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1225 |    Pointer pnt;
      |            ^~~
objtable.c: In function ‘SeqTableSingleDataAsnRead’:
objtable.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1269 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableMultiDataAsnRead’:
objtable.c:1111:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1111 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtable.c: In function ‘SeqTableSingleDataAsnRead’:
objtable.c:1354:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1354 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtable.c: In function ‘SeqTableSparseIndexAsnRead’:
objtable.c:1559:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1559 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpubme.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objpubme.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objpubme.c: In function ‘PubmedEntryAsnRead’:
objpubme.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   89 |    AsnReadFunc func;
      |                ^~~~
objpubme.c: In function ‘PubmedUrlAsnRead’:
objpubme.c:288:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  288 |    AsnReadFunc func;
      |                ^~~~
objpubme.c:287:12: warning: unused variable ‘isError’ [-Wunused-variable]
  287 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmdrs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmdrs.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmdrs.c: In function ‘MedlarsEntryAsnRead’:
objmdrs.c:85:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   85 |    AsnReadFunc func;
      |                ^~~~
objmdrs.c: In function ‘MedlarsRecordAsnRead’:
objmdrs.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  259 |    AsnReadFunc func;
      |                ^~~~
objmdrs.c:258:12: warning: unused variable ‘isError’ [-Wunused-variable]
  258 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objproj.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objproj.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objproj.c: In function ‘ProjectAsnRead’:
objproj.c:116:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  116 |    AsnReadFunc func;
      |                ^~~~
objproj.c:115:12: warning: unused variable ‘isError’ [-Wunused-variable]
  115 |    Boolean isError = FALSE;
      |            ^~~~~~~
objproj.c: In function ‘ProjectDescrAsnRead’:
objproj.c:720:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  720 |    AsnReadFunc func;
      |                ^~~~
objproj.c: In function ‘ProjdescFree’:
objproj.c:857:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  857 |    Pointer pnt;
      |            ^~~
objproj.c: In function ‘ProjdescAsnRead’:
objproj.c:898:12: warning: unused variable ‘isError’ [-Wunused-variable]
  898 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
objproj.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objproj.c: In function ‘ProjdescAsnRead’:
objproj.c:958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  958 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objproj.c: In function ‘ProjectItemAsnRead’:
objproj.c:536:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  536 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgbseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objgbseq.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objgbseq.c: In function ‘GBSetAsnRead’:
objgbseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable]
   66 |    DataVal av;
      |            ^~
objgbseq.c: In function ‘GBSeqAsnRead’:
objgbseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  235 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBReferenceAsnRead’:
objgbseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  742 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBCommentAsnRead’:
objgbseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  983 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBStrucCommentAsnRead’:
objgbseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1150 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBFeatureAsnRead’:
objgbseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1321 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBFeatureSetAsnRead’:
objgbseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1548 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBAltSeqDataAsnRead’:
objgbseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1715 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBXrefAsnRead’:
objgbseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1882 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1881 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBStrucCommentItemAsnRead’:
objgbseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2053 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBIntervalAsnRead’:
objgbseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2233 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBQualifierAsnRead’:
objgbseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2447 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBAltSeqItemAsnRead’:
objgbseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2622 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2621 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtseq.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtseq.c: In function ‘TSeqAsnRead’:
objtseq.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   89 |    AsnReadFunc func;
      |                ^~~~
objtseq.c: In function ‘TSeqSetAsnRead’:
objtseq.c:325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  325 |    AsnReadFunc func;
      |                ^~~~
objtseq.c: In function ‘BioseqToTSeq’:
objtseq.c:452:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable]
  452 |  Uint1 seqcode;
      |        ^~~~~~~
objtseq.c: In function ‘BioseqToMiniTSeq’:
objtseq.c:564:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable]
  564 |  Uint1 seqcode;
      |        ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objinsdseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objinsdseq.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objinsdseq.c: In function ‘INSDSetAsnRead’:
objinsdseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable]
   66 |    DataVal av;
      |            ^~
objinsdseq.c: In function ‘INSDSeqAsnRead’:
objinsdseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  235 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDReferenceAsnRead’:
objinsdseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  742 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDCommentAsnRead’:
objinsdseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  983 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDStrucCommentAsnRead’:
objinsdseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1150 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDFeatureAsnRead’:
objinsdseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1321 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDFeatureSetAsnRead’:
objinsdseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1548 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDAltSeqDataAsnRead’:
objinsdseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1715 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDXrefAsnRead’:
objinsdseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1882 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1881 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDStrucCommentItemAsnRead’:
objinsdseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2053 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDIntervalAsnRead’:
objinsdseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2233 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDQualifierAsnRead’:
objinsdseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2447 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDAltSeqItemAsnRead’:
objinsdseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2622 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2621 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmacro.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmacro.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmacro.c: In function ‘AECRActionAsnRead’:
objmacro.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseActionAsnRead’:
objmacro.c:272:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  272 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:271:12: warning: unused variable ‘isError’ [-Wunused-variable]
  271 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MacroActionListAsnRead’:
objmacro.c:478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  478 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:475:12: warning: unused variable ‘av’ [-Wunused-variable]
  475 |    DataVal av;
      |            ^~
objmacro.c: In function ‘SuspectRuleSetAsnRead’:
objmacro.c:595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  595 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:592:12: warning: unused variable ‘av’ [-Wunused-variable]
  592 |    DataVal av;
      |            ^~
objmacro.c: In function ‘WordSubstitutionAsnRead’:
objmacro.c:731:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  731 |    AsnReadFunc func;
      |                ^~~~
objmacro.c: In function ‘WordSubstitutionSetAsnRead’:
objmacro.c:899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  899 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:896:12: warning: unused variable ‘av’ [-Wunused-variable]
  896 |    DataVal av;
      |            ^~
objmacro.c: In function ‘StringConstraintAsnRead’:
objmacro.c:1045:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1045 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1044:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1044 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StringConstraintSetAsnRead’:
objmacro.c:1307:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1307 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1304:12: warning: unused variable ‘av’ [-Wunused-variable]
 1304 |    DataVal av;
      |            ^~
objmacro.c: In function ‘LocationPosConstraintFree’:
objmacro.c:1403:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1403 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationPosConstraintAsnRead’:
objmacro.c:1432:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1432 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationConstraintAsnRead’:
objmacro.c:1633:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1633 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1632:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1632 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalValAsnRead’:
objmacro.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1849 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1848 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalValChoiceFree’:
objmacro.c:1979:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1979 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FeatQualLegalValChoiceAsnRead’:
objmacro.c:2011:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2011 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalSetAsnRead’:
objmacro.c:2165:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2165 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2162:12: warning: unused variable ‘av’ [-Wunused-variable]
 2162 |    DataVal av;
      |            ^~
objmacro.c: In function ‘FeatQualChoiceFree’:
objmacro.c:2261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2261 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FeatQualChoiceAsnRead’:
objmacro.c:2293:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2293 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldAsnRead’:
objmacro.c:2474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2474 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2473:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2473 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldLegalAsnRead’:
objmacro.c:2641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2641 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2640:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2640 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldPairAsnRead’:
objmacro.c:2807:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2807 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2806:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2806 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaFeatTypeFree’:
objmacro.c:2950:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2950 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘RnaFeatTypeAsnRead’:
objmacro.c:2982:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2982 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaQualAsnRead’:
objmacro.c:3232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3232 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3231:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaQualPairAsnRead’:
objmacro.c:3400:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3400 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3399:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3399 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualPairAsnRead’:
objmacro.c:3576:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3576 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3575:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3575 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualChoiceFree’:
objmacro.c:3704:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3704 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SourceQualChoiceAsnRead’:
objmacro.c:3733:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3733 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualTextValAsnRead’:
objmacro.c:3950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3950 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3949:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3949 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualValChoiceFree’:
objmacro.c:4080:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4080 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SourceQualValChoiceAsnRead’:
objmacro.c:4112:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4112 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualValSetAsnRead’:
objmacro.c:4310:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4310 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4307:12: warning: unused variable ‘av’ [-Wunused-variable]
 4307 |    DataVal av;
      |            ^~
objmacro.c: In function ‘CDSGeneProtFieldPairAsnRead’:
objmacro.c:4442:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4442 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4441:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4441 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldFree’:
objmacro.c:4570:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4570 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MolinfoFieldAsnRead’:
objmacro.c:4599:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoMoleculePairAsnRead’:
objmacro.c:4826:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4826 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4825:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4825 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoTechniquePairAsnRead’:
objmacro.c:4990:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4990 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4989:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4989 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoCompletednessPairAsnRead’:
objmacro.c:5154:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5154 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5153:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5153 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoMolClassPairAsnRead’:
objmacro.c:5318:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5318 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5317:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5317 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoTopologyPairAsnRead’:
objmacro.c:5482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5482 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5481:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5481 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoStrandPairAsnRead’:
objmacro.c:5646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5646 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5645:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5645 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldPairFree’:
objmacro.c:5774:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 5774 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MolinfoFieldPairAsnRead’:
objmacro.c:5821:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5821 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldListAsnRead’:
objmacro.c:6015:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6015 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6012:12: warning: unused variable ‘av’ [-Wunused-variable]
 6012 |    DataVal av;
      |            ^~
objmacro.c: In function ‘MolinfoFieldConstraintAsnRead’:
objmacro.c:6149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6149 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6148:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6148 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StructuredCommentFieldFree’:
objmacro.c:6280:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 6280 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘StructuredCommentFieldAsnRead’:
objmacro.c:6312:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6312 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StructuredCommentFieldPairAsnRead’:
objmacro.c:6508:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6508 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6507:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6507 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘DBLinkFieldPairAsnRead’:
objmacro.c:6678:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6678 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6677:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6677 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldConstraintAsnRead’:
objmacro.c:6843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6843 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6842:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6842 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeFree’:
objmacro.c:6974:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 6974 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’:
objmacro.c:7003:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7003 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintAsnRead’:
objmacro.c:7220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7220 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7219:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7219 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PublicationConstraintAsnRead’:
objmacro.c:7389:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7389 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7388:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7388 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceConstraintAsnRead’:
objmacro.c:7571:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7571 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7570:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7570 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtPseudoConstraintAsnRead’:
objmacro.c:7763:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7763 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7762:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7762 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtConstraintFieldFree’:
objmacro.c:7891:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 7891 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘CDSGeneProtConstraintFieldAsnRead’:
objmacro.c:7920:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7920 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtQualConstraintAsnRead’:
objmacro.c:8095:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8095 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:8094:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8094 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldConstraintAsnRead’:
objmacro.c:8279:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8279 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:8278:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8278 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldTypeFree’:
objmacro.c:8413:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8413 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FieldTypeAsnRead’:
objmacro.c:8457:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8457 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintFree’:
objmacro.c:8666:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8666 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’:
objmacro.c:8695:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8695 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘QuantityConstraintFree’:
objmacro.c:8875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8875 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘QuantityConstraintAsnRead’:
objmacro.c:8904:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8904 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceConstraintAsnRead’:
objmacro.c:9104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9104 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9103:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9103 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TranslationConstraintAsnRead’:
objmacro.c:9332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9332 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9331:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9331 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConstraintChoiceFree’:
objmacro.c:9487:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 9487 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConstraintChoiceAsnRead’:
objmacro.c:9549:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9549 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConstraintChoiceSetAsnRead’:
objmacro.c:9783:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9783 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9780:12: warning: unused variable ‘av’ [-Wunused-variable]
 9780 |    DataVal av;
      |            ^~
objmacro.c: In function ‘TextMarkerFree’:
objmacro.c:9879:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 9879 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TextMarkerAsnRead’:
objmacro.c:9911:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9911 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextPortionAsnRead’:
objmacro.c:10109:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10109 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10108:12: warning: unused variable ‘isError’ [-Wunused-variable]
10108 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldEditAsnRead’:
objmacro.c:10328:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10328 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10327:12: warning: unused variable ‘isError’ [-Wunused-variable]
10327 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldPairTypeFree’:
objmacro.c:10478:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
10478 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FieldPairTypeAsnRead’:
objmacro.c:10528:12: warning: unused variable ‘isError’ [-Wunused-variable]
10528 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyActionAsnRead’:
objmacro.c:10747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10747 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10746:12: warning: unused variable ‘isError’ [-Wunused-variable]
10746 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditActionAsnRead’:
objmacro.c:10927:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10927 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10926:12: warning: unused variable ‘isError’ [-Wunused-variable]
10926 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextTransformFree’:
objmacro.c:11061:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
11061 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TextTransformAsnRead’:
objmacro.c:11096:12: warning: unused variable ‘isError’ [-Wunused-variable]
11096 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextTransformSetAsnRead’:
objmacro.c:11269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11269 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11266:12: warning: unused variable ‘av’ [-Wunused-variable]
11266 |    DataVal av;
      |            ^~
objmacro.c: In function ‘ConvertActionAsnRead’:
objmacro.c:11405:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11405 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11404:12: warning: unused variable ‘isError’ [-Wunused-variable]
11404 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CopyActionAsnRead’:
objmacro.c:11600:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11600 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11599:12: warning: unused variable ‘isError’ [-Wunused-variable]
11599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SwapActionAsnRead’:
objmacro.c:11768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11768 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11767:12: warning: unused variable ‘isError’ [-Wunused-variable]
11767 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AECRParseActionAsnRead’:
objmacro.c:11932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11932 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11931:12: warning: unused variable ‘isError’ [-Wunused-variable]
11931 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveActionAsnRead’:
objmacro.c:12151:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12151 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12150:12: warning: unused variable ‘isError’ [-Wunused-variable]
12150 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveOutsideActionAsnRead’:
objmacro.c:12312:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12312 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12311:12: warning: unused variable ‘isError’ [-Wunused-variable]
12311 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ActionChoiceFree’:
objmacro.c:12455:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12455 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ActionChoiceAsnRead’:
objmacro.c:12508:12: warning: unused variable ‘isError’ [-Wunused-variable]
12508 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcOrgChoiceFree’:
objmacro.c:12697:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12697 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’:
objmacro.c:12726:12: warning: unused variable ‘isError’ [-Wunused-variable]
12726 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcOrgAsnRead’:
objmacro.c:12911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12910:12: warning: unused variable ‘isError’ [-Wunused-variable]
12910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcGeneralIdFree’:
objmacro.c:13042:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13042 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’:
objmacro.c:13074:12: warning: unused variable ‘isError’ [-Wunused-variable]
13074 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcFree’:
objmacro.c:13232:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13232 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcAsnRead’:
objmacro.c:13270:12: warning: unused variable ‘isError’ [-Wunused-variable]
13270 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseDstOrgAsnRead’:
objmacro.c:13526:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
13526 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:13525:12: warning: unused variable ‘isError’ [-Wunused-variable]
13525 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseDestFree’:
objmacro.c:13657:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13657 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseDestAsnRead’:
objmacro.c:13695:12: warning: unused variable ‘isError’ [-Wunused-variable]
13695 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationIntervalAsnRead’:
objmacro.c:13905:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
13905 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:13904:12: warning: unused variable ‘isError’ [-Wunused-variable]
13904 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationChoiceFree’:
objmacro.c:14033:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
14033 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationChoiceAsnRead’:
objmacro.c:14065:12: warning: unused variable ‘isError’ [-Wunused-variable]
14065 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceListAsnRead’:
objmacro.c:14241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14241 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14238:12: warning: unused variable ‘av’ [-Wunused-variable]
14238 |    DataVal av;
      |            ^~
objmacro.c: In function ‘SequenceListChoiceFree’:
objmacro.c:14337:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
14337 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SequenceListChoiceAsnRead’:
objmacro.c:14369:12: warning: unused variable ‘isError’ [-Wunused-variable]
14369 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyFeatureActionAsnRead’:
objmacro.c:14560:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14560 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14559:12: warning: unused variable ‘isError’ [-Wunused-variable]
14559 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveFeatureActionAsnRead’:
objmacro.c:14827:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14827 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14826:12: warning: unused variable ‘isError’ [-Wunused-variable]
14826 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFromCDSOptionsAsnRead’:
objmacro.c:14994:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14994 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14993:12: warning: unused variable ‘isError’ [-Wunused-variable]
14993 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureSrcOptionsFree’:
objmacro.c:15131:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
15131 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConvertFeatureSrcOptionsAsnRead’:
objmacro.c:15163:12: warning: unused variable ‘isError’ [-Wunused-variable]
15163 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RegionTypeAsnRead’:
objmacro.c:15332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15332 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15331:12: warning: unused variable ‘isError’ [-Wunused-variable]
15331 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureDstOptionsFree’:
objmacro.c:15451:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
15451 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’:
objmacro.c:15486:12: warning: unused variable ‘isError’ [-Wunused-variable]
15486 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureActionAsnRead’:
objmacro.c:15702:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15702 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15701:12: warning: unused variable ‘isError’ [-Wunused-variable]
15701 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditLocationStrandAsnRead’:
objmacro.c:15911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15910:12: warning: unused variable ‘isError’ [-Wunused-variable]
15910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘Partial5SetActionAsnRead’:
objmacro.c:16075:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16075 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16074:12: warning: unused variable ‘isError’ [-Wunused-variable]
16074 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘Partial3SetActionAsnRead’:
objmacro.c:16239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16238:12: warning: unused variable ‘isError’ [-Wunused-variable]
16238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PartialBothSetActionAsnRead’:
objmacro.c:16403:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16403 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16402:12: warning: unused variable ‘isError’ [-Wunused-variable]
16402 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ExtendToFeatureAsnRead’:
objmacro.c:16568:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16568 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16567:12: warning: unused variable ‘isError’ [-Wunused-variable]
16567 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationEditTypeFree’:
objmacro.c:16708:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
16708 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationEditTypeAsnRead’:
objmacro.c:16755:12: warning: unused variable ‘isError’ [-Wunused-variable]
16755 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditFeatureLocationActionAsnRead’:
objmacro.c:17032:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17032 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17031:12: warning: unused variable ‘isError’ [-Wunused-variable]
17031 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoBlockAsnRead’:
objmacro.c:17232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17232 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17231:12: warning: unused variable ‘isError’ [-Wunused-variable]
17231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveDescriptorActionAsnRead’:
objmacro.c:17415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17415 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17414:12: warning: unused variable ‘isError’ [-Wunused-variable]
17414 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AutodefActionAsnRead’:
objmacro.c:17584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17584 |    AsnReadFunc func;
      |                ^~~~
objmacro.c: In function ‘FixPubCapsActionAsnRead’:
objmacro.c:17758:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17758 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17757:12: warning: unused variable ‘isError’ [-Wunused-variable]
17757 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SortFieldsActionAsnRead’:
objmacro.c:17963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17963 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17962:12: warning: unused variable ‘isError’ [-Wunused-variable]
17962 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixAuthorCapsAsnRead’:
objmacro.c:18142:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18142 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18141:12: warning: unused variable ‘isError’ [-Wunused-variable]
18141 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixCapsActionFree’:
objmacro.c:18261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
18261 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixCapsActionAsnRead’:
objmacro.c:18296:12: warning: unused variable ‘isError’ [-Wunused-variable]
18296 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixFormatActionFree’:
objmacro.c:18470:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
18470 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixFormatActionAsnRead’:
objmacro.c:18499:12: warning: unused variable ‘isError’ [-Wunused-variable]
18499 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveDuplicateFeatureActionAsnRead’:
objmacro.c:18705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18705 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18704:12: warning: unused variable ‘isError’ [-Wunused-variable]
18704 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘GeneXrefTypeAsnRead’:
objmacro.c:18899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18899 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18898:12: warning: unused variable ‘isError’ [-Wunused-variable]
18898 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘XrefTypeFree’:
objmacro.c:19036:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
19036 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘XrefTypeAsnRead’:
objmacro.c:19068:12: warning: unused variable ‘isError’ [-Wunused-variable]
19068 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveXrefsActionAsnRead’:
objmacro.c:19239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19238:12: warning: unused variable ‘isError’ [-Wunused-variable]
19238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MakeGeneXrefActionAsnRead’:
objmacro.c:19410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19410 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19409:12: warning: unused variable ‘isError’ [-Wunused-variable]
19409 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AuthorFixActionAsnRead’:
objmacro.c:19578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19578 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19577:12: warning: unused variable ‘isError’ [-Wunused-variable]
19577 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘UpdateSequencesActionAsnRead’:
objmacro.c:19747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19747 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19746:12: warning: unused variable ‘isError’ [-Wunused-variable]
19746 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CreateTSAIdsSrcFree’:
objmacro.c:19877:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
19877 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’:
objmacro.c:19909:12: warning: unused variable ‘isError’ [-Wunused-variable]
19909 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CreateTSAIdsActionAsnRead’:
objmacro.c:20092:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20092 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20091:12: warning: unused variable ‘isError’ [-Wunused-variable]
20091 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AutofixActionAsnRead’:
objmacro.c:20274:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20274 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20273:12: warning: unused variable ‘isError’ [-Wunused-variable]
20273 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixSetsActionFree’:
objmacro.c:20395:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
20395 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixSetsActionAsnRead’:
objmacro.c:20424:12: warning: unused variable ‘isError’ [-Wunused-variable]
20424 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TableMatchTypeFree’:
objmacro.c:20582:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
20582 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TableMatchTypeAsnRead’:
objmacro.c:20614:12: warning: unused variable ‘isError’ [-Wunused-variable]
20614 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TableMatchAsnRead’:
objmacro.c:20873:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20873 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20872:12: warning: unused variable ‘isError’ [-Wunused-variable]
20872 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyTableExtraDataFree’:
objmacro.c:21004:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
21004 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ApplyTableExtraDataAsnRead’:
objmacro.c:21033:12: warning: unused variable ‘isError’ [-Wunused-variable]
21033 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyTableActionAsnRead’:
objmacro.c:21210:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21210 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21209:12: warning: unused variable ‘isError’ [-Wunused-variable]
21209 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AddFileActionAsnRead’:
objmacro.c:21411:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21411 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21410:12: warning: unused variable ‘isError’ [-Wunused-variable]
21410 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AddDescriptorListActionAsnRead’:
objmacro.c:21582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21582 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21581:12: warning: unused variable ‘isError’ [-Wunused-variable]
21581 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveSequencesActionAsnRead’:
objmacro.c:21753:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21753 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21752:12: warning: unused variable ‘isError’ [-Wunused-variable]
21752 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘UpdateReplacedEcNumbersActionAsnRead’:
objmacro.c:21911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21910:12: warning: unused variable ‘isError’ [-Wunused-variable]
21910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RetranslateCdsActionAsnRead’:
objmacro.c:22084:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
22084 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:22083:12: warning: unused variable ‘isError’ [-Wunused-variable]
22083 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AdjustFeaturesForGapsActionAsnRead’:
objmacro.c:22239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
22239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:22238:12: warning: unused variable ‘isError’ [-Wunused-variable]
22238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MacroActionChoiceFree’:
objmacro.c:22412:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
22412 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MacroActionChoiceAsnRead’:
objmacro.c:22522:12: warning: unused variable ‘isError’ [-Wunused-variable]
22522 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SearchFuncFree’:
objmacro.c:23116:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
23116 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SearchFuncAsnRead’:
objmacro.c:23154:12: warning: unused variable ‘isError’ [-Wunused-variable]
23154 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SimpleReplaceAsnRead’:
objmacro.c:23425:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23425 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23424:12: warning: unused variable ‘isError’ [-Wunused-variable]
23424 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ReplaceFuncFree’:
objmacro.c:23564:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
23564 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ReplaceFuncAsnRead’:
objmacro.c:23599:12: warning: unused variable ‘isError’ [-Wunused-variable]
23599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ReplaceRuleAsnRead’:
objmacro.c:23781:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23781 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23780:12: warning: unused variable ‘isError’ [-Wunused-variable]
23780 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SuspectRuleAsnRead’:
objmacro.c:23955:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23955 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23954:12: warning: unused variable ‘isError’ [-Wunused-variable]
23954 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualChoiceAsnRead’:
objmacro.c:3806:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3806 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SourceQualValChoiceAsnRead’:
objmacro.c:4182:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4182 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MolinfoFieldAsnRead’:
objmacro.c:4679:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4679 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MolinfoFieldPairAsnRead’:
objmacro.c:5883:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5883 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘StructuredCommentFieldAsnRead’:
objmacro.c:6371:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6371 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FieldTypeAsnRead’:
objmacro.c:8543:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8543 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ConstraintChoiceAsnRead’:
objmacro.c:9631:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9631 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TextTransformAsnRead’:
objmacro.c:11149:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11149 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’:
objmacro.c:13133:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13133 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixCapsActionAsnRead’:
objmacro.c:18363:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
18363 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixFormatActionAsnRead’:
objmacro.c:18565:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
18565 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixSetsActionAsnRead’:
objmacro.c:20483:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20483 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MacroActionChoiceAsnRead’:
objmacro.c:22829:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
22829 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationPosConstraintAsnRead’:
objmacro.c:1491:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1491 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FeatQualChoiceAsnRead’:
objmacro.c:2342:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2342 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘RnaFeatTypeAsnRead’:
objmacro.c:3076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3076 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’:
objmacro.c:7076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7076 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’:
objmacro.c:8768:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8768 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘QuantityConstraintAsnRead’:
objmacro.c:8963:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8963 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TextMarkerAsnRead’:
objmacro.c:9970:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9970 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FieldPairTypeAsnRead’:
objmacro.c:10594:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10594 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ActionChoiceAsnRead’:
objmacro.c:12578:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12578 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’:
objmacro.c:12778:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12778 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcAsnRead’:
objmacro.c:13365:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13365 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseDestAsnRead’:
objmacro.c:13762:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13762 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationChoiceAsnRead’:
objmacro.c:14121:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14121 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SequenceListChoiceAsnRead’:
objmacro.c:14418:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14418 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’:
objmacro.c:15556:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
15556 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationEditTypeAsnRead’:
objmacro.c:16859:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16859 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’:
objmacro.c:19958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
19958 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TableMatchTypeAsnRead’:
objmacro.c:20712:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20712 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SearchFuncAsnRead’:
objmacro.c:23259:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23259 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ReplaceFuncAsnRead’:
objmacro.c:23648:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23648 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objent2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objent2.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objent2.c: In function ‘Entrez2IdListAsnRead’:
objent2.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objent2.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanExpAsnRead’:
objent2.c:277:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  277 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2BooleanElementFree’:
objent2.c:416:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  416 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘Entrez2BooleanElementAsnRead’:
objent2.c:457:12: warning: unused variable ‘isError’ [-Wunused-variable]
  457 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LimitsAsnRead’:
objent2.c:666:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  666 |    AsnReadFunc func;
      |                ^~~~
objent2.c:665:12: warning: unused variable ‘isError’ [-Wunused-variable]
  665 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanTermAsnRead’:
objent2.c:844:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  844 |    AsnReadFunc func;
      |                ^~~~
objent2.c:843:12: warning: unused variable ‘isError’ [-Wunused-variable]
  843 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2RequestAsnRead’:
objent2.c:1041:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1041 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1040:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1040 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘E2RequestFree’:
objent2.c:1203:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1203 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘E2RequestAsnRead’:
objent2.c:1256:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1256 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2EvalBooleanAsnRead’:
objent2.c:1493:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1493 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1492:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1492 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermQueryAsnRead’:
objent2.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1670 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1669:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1669 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermPosAsnRead’:
objent2.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1849 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1848 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2HierQueryAsnRead’:
objent2.c:2036:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2036 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2035:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2035 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2GetLinksAsnRead’:
objent2.c:2224:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2224 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2223:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2223 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2IdAsnRead’:
objent2.c:2419:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2419 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2418:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2418 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DtFilterAsnRead’:
objent2.c:2584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2584 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2583:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2583 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2ReplyAsnRead’:
objent2.c:2762:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2762 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2761:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2761 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘E2ReplyFree’:
objent2.c:2935:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2935 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘E2ReplyAsnRead’:
objent2.c:2991:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2991 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2InfoAsnRead’:
objent2.c:3237:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3237 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2BooleanReplyAsnRead’:
objent2.c:3409:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3409 |    AsnReadFunc func;
      |                ^~~~
objent2.c:3408:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3408 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumListAsnRead’:
objent2.c:3587:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3587 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2TermListAsnRead’:
objent2.c:3749:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3749 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2HierNodeAsnRead’:
objent2.c:3922:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3922 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2LinkSetAsnRead’:
objent2.c:4122:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4122 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4121:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4121 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkCountListAsnRead’:
objent2.c:4299:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4299 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2DbInfoAsnRead’:
objent2.c:4466:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4466 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2FieldInfoAsnRead’:
objent2.c:4706:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4706 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4705:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4705 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkInfoAsnRead’:
objent2.c:4950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4950 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4949:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4949 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumFieldInfoAsnRead’:
objent2.c:5149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5149 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5148:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5148 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumAsnRead’:
objent2.c:5325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5325 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2DocsumDataAsnRead’:
objent2.c:5488:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5488 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5487:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5487 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermAsnRead’:
objent2.c:5655:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5655 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5654:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5654 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkCountAsnRead’:
objent2.c:5838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5838 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5837:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5837 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanElementAsnRead’:
objent2.c:524:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  524 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objent2.c: In function ‘E2RequestAsnRead’:
objent2.c:1333:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1333 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objent2.c: In function ‘E2ReplyAsnRead’:
objent2.c:3075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3075 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ent2api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ent2api.h:45,
                 from ent2api.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pmfapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pmfapi.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pmfapi.c:2813:24: warning: ‘SortByInt4’ defined but not used [-Wunused-function]
 2813 | static int LIBCALLBACK SortByInt4 (VoidPtr vp1, VoidPtr vp2)
      |                        ^~~~~~~~~~
pmfapi.c: In function ‘ConfirmAccStrInSep’:
pmfapi.c:1314:3: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1314 |   SeqIdFree (tmp);
      |   ^~~~~~~~~~~~~~~
pmfapi.c: In function ‘PubMedSynchronousQuery’:
pmfapi.c:1224:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1224 |     printf ("PubMedWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQueryEx’:
pmfapi.c:1479:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1479 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQueryTI’:
pmfapi.c:1663:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1663 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQuerySRA’:
pmfapi.c:1744:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1744 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiRevHistSynchronousQuery’:
pmfapi.c:1817:61: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1817 |     printf ("GiRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                   ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiAccVerSynchronousQuery’:
pmfapi.c:1869:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1869 |     printf ("GiAccVerWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                  ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘AccnRevHistSynchronousQuery’:
pmfapi.c:1920:63: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1920 |     printf ("AccnRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                     ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiSeqIdSetSynchronousQuery’:
pmfapi.c:1971:62: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1971 |     printf ("GiSeqIdSetWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                    ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘AccnListSynchronousQuery’:
pmfapi.c:2021:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2021 |     printf ("AccnListWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                  ~~~~~~~~~~^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtax3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtax3.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtax3.c: In function ‘Taxon3RequestAsnRead’:
objtax3.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   86 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3RequestFree’:
objtax3.c:200:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  200 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘SequenceOfIntAsnRead’:
objtax3.c:418:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  418 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘Taxon3ReplyAsnRead’:
objtax3.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3ReplyFree’:
objtax3.c:661:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  661 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘T3ErrorAsnRead’:
objtax3.c:872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  872 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3DataAsnRead’:
objtax3.c:1072:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1072 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘Value_valueFree’:
objtax3.c:1253:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1253 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘T3StatusFlagsAsnRead’:
objtax3.c:1283:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1283 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3RefreshFlagsAsnRead’:
objtax3.c:1608:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1608 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objtax3.c:5:
objtax3.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objtax3.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from objtax3.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objtax3.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objtax3.c: In function ‘T3RequestAsnRead’:
objtax3.c:297:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  297 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c: In function ‘T3ReplyAsnRead’:
objtax3.c:741:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  741 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c: In function ‘T3StatusFlagsAsnRead’:
objtax3.c:1421:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1421 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c:1362:10: note: ‘choice’ was declared here
 1362 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tax3api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tax3api.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tax3api.c: In function ‘Tax3SynchronousQuery’:
tax3api.c:189:27: warning: variable ‘t3’ set but not used [-Wunused-but-set-variable]
  189 |   time_t          t1, t2, t3;
      |                           ^~
tax3api.c: In function ‘CheckSuggestedFixes’:
tax3api.c:1030:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable]
 1030 |   T3ErrorPtr       tep;
      |                    ^~~
tax3api.c: In function ‘TryNewSuggestedFixes’:
tax3api.c:1142:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable]
 1142 |   T3ErrorPtr       tep;
      |                    ^~~
tax3api.c: In function ‘RemoveSpeciesSpecific’:
tax3api.c:1398:13: warning: unused variable ‘cp’ [-Wunused-variable]
 1398 |     CharPtr cp;
      |             ^~
At top level:
tax3api.c:3399:13: warning: ‘AddBioSourcesToChecklist’ defined but not used [-Wunused-function]
 3399 | static void AddBioSourcesToChecklist (ValNodePtr biop_list, ValNodePtr check_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
tax3api.c:2699:16: warning: ‘MatchesGenBankSynonym’ defined but not used [-Wunused-function]
 2699 | static Boolean MatchesGenBankSynonym (CharPtr txt, OrgRefPtr response_org)
      |                ^~~~~~~~~~~~~~~~~~~~~
tax3api.c:2682:16: warning: ‘MatchesSynonym’ defined but not used [-Wunused-function]
 2682 | static Boolean MatchesSynonym (CharPtr txt, OrgRefPtr response_org)
      |                ^~~~~~~~~~~~~~
tax3api.c:2273:16: warning: ‘EndsWithSp’ defined but not used [-Wunused-function]
 2273 | static Boolean EndsWithSp (CharPtr str)
      |                ^~~~~~~~~~
tax3api.c:990:19: warning: ‘MakeTaxFixRequestList’ defined but not used [-Wunused-function]
  990 | static ValNodePtr MakeTaxFixRequestList (ValNodePtr biop_list)
      |                   ^~~~~~~~~~~~~~~~~~~~~
tax3api.c:362:16: warning: ‘HasMisspellingFlag’ defined but not used [-Wunused-function]
  362 | static Boolean HasMisspellingFlag (T3DataPtr t)
      |                ^~~~~~~~~~~~~~~~~~
tax3api.c:298:13: warning: ‘SaveTaxon3Request’ defined but not used [-Wunused-function]
  298 | static void SaveTaxon3Request (Taxon3RequestPtr t3rp, CharPtr path)
      |             ^~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objegkludge.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objegkludge.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentgene.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objentgene.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objentgene.c: In function ‘EntrezgeneAsnRead’:
objentgene.c:103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  103 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘EntrezgeneSetAsnRead’:
objentgene.c:412:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  412 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:409:12: warning: unused variable ‘av’ [-Wunused-variable]
  409 |    DataVal av;
      |            ^~
objentgene.c: In function ‘GeneTrackAsnRead’:
objentgene.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘GeneCommentaryAsnRead’:
objentgene.c:768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  768 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘Method_methodFree’:
objentgene.c:1073:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1073 |    Pointer pnt;
      |            ^~~
objentgene.c: In function ‘MapsAsnRead’:
objentgene.c:1104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1104 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1103:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1103 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘Method_methodAsnRead’:
objentgene.c:1184:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1184 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘GeneSourceAsnRead’:
objentgene.c:1426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1426 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1425:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1425 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘XtraTermsAsnRead’:
objentgene.c:1641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1641 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1640:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1640 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘OtherSourceAsnRead’:
objentgene.c:1812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1812 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1811:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1811 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘MapsAsnRead’:
objentgene.c:1236:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1236 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objentgene.c:1183:10: note: ‘choice’ was declared here
 1183 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmla2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmla2.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmla2.c: In function ‘Mla2RequestFree’:
objmla2.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objmla2.c: In function ‘Mla22RequestAsnRead’:
objmla2.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable]
   96 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla2.c: In function ‘TitleMsg2AsnRead’:
objmla2.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  447 |    AsnReadFunc func;
      |                ^~~~
objmla2.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable]
  446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla2.c: In function ‘TitleMsgList2AsnRead’:
objmla2.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  613 |    AsnReadFunc func;
      |                ^~~~
objmla2.c: In function ‘Mla22RequestAsnRead’:
objmla2.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  249 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmla2.c: In function ‘Mla2BackAsnRead’:
objmla2.c:904:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  904 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mla2api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/mla2api.h:45,
                 from mla2api.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF qblastapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from qblastapi.c:123:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
qblastapi.c: In function ‘SecondQBlastCallback’:
qblastapi.c:262:15: warning: variable ‘waiting’ set but not used [-Wunused-but-set-variable]
  262 |   Boolean     waiting = FALSE;
      |               ^~~~~~~
qblastapi.c: In function ‘BLASTGetSeqAnnotByRIDEx’:
qblastapi.c:826:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  826 |     EIO_Status   status;
      |                  ^~~~~~
qblastapi.c: In function ‘BLASTGetQueryBioseqByRIDEx’:
qblastapi.c:871:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  871 |     EIO_Status   status;
      |                  ^~~~~~
qblastapi.c: In function ‘QBlastCheckQueue’:
qblastapi.c:688:36: warning: ‘&FORMAT_OBJECT=Alignment&FOR...’ directive writing 43 bytes into a region of size between 5 and 68 [-Wformat-overflow=]
  688 |       sprintf (str, "CMD=Get&RID=%s&FORMAT_OBJECT=Alignment&FORMAT_TYPE=ASN.1\n", curr->rid);
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from qblastapi.c:123:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 56 and 119 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vecscnapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from vecscnapi.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmim.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmim.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmim.c: In function ‘MimSetAsnRead’:
objmim.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   86 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimDateAsnRead’:
objmim.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  248 |    AsnReadFunc func;
      |                ^~~~
objmim.c:247:12: warning: unused variable ‘isError’ [-Wunused-variable]
  247 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimEntryAsnRead’:
objmim.c:448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  448 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimCitAsnRead’:
objmim.c:909:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  909 |    AsnReadFunc func;
      |                ^~~~
objmim.c:908:12: warning: unused variable ‘isError’ [-Wunused-variable]
  908 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimTextAsnRead’:
objmim.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1096 |    AsnReadFunc func;
      |                ^~~~
objmim.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1095 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimEditItemAsnRead’:
objmim.c:1276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1276 |    AsnReadFunc func;
      |                ^~~~
objmim.c:1275:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1275 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimAllelicVariantAsnRead’:
objmim.c:1448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1448 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimIndexTermAsnRead’:
objmim.c:1640:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1640 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimReferenceAsnRead’:
objmim.c:1819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1819 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimLinkAsnRead’:
objmim.c:2195:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2195 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2194:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2194 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimAuthorAsnRead’:
objmim.c:2369:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2369 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2368:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2368 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimPageAsnRead’:
objmim.c:2535:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2535 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2534:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2534 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objvalid.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objvalid.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objvalid.c: In function ‘FieldRuleAsnRead’:
objvalid.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   88 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:87:12: warning: unused variable ‘isError’ [-Wunused-variable]
   87 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘FieldSetAsnRead’:
objvalid.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  259 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:256:12: warning: unused variable ‘av’ [-Wunused-variable]
  256 |    DataVal av;
      |            ^~
objvalid.c: In function ‘DependentFieldRuleAsnRead’:
objvalid.c:396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  396 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:395:12: warning: unused variable ‘isError’ [-Wunused-variable]
  395 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘DependentFieldSetAsnRead’:
objvalid.c:582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  582 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:579:12: warning: unused variable ‘av’ [-Wunused-variable]
  579 |    DataVal av;
      |            ^~
objvalid.c: In function ‘CommentRuleAsnRead’:
objvalid.c:721:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  721 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:720:12: warning: unused variable ‘isError’ [-Wunused-variable]
  720 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘CommentSetAsnRead’:
objvalid.c:926:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  926 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:923:12: warning: unused variable ‘av’ [-Wunused-variable]
  923 |    DataVal av;
      |            ^~
objvalid.c: In function ‘PhraseListAsnRead’:
objvalid.c:1043:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1043 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:1040:12: warning: unused variable ‘av’ [-Wunused-variable]
 1040 |    DataVal av;
      |            ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mimapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mimapi.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddapi.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqport.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from seqport.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqport.c: In function ‘productLoc_to_locationLoc’:
seqport.c:4260:13: warning: variable ‘is_cdregion’ set but not used [-Wunused-but-set-variable]
 4260 |     Boolean is_cdregion = FALSE;
      |             ^~~~~~~~~~~
seqport.c: In function ‘NaLocFromNaInterval’:
seqport.c:4590:8: warning: variable ‘p_end_pos’ set but not used [-Wunused-but-set-variable]
 4590 |   Int4 p_end_pos;    /*the end of the product sequence in the current loc*/
      |        ^~~~~~~~~
seqport.c: In function ‘dnaLoc_to_aaLoc’:
seqport.c:4706:18: warning: variable ‘cds_right’ set but not used [-Wunused-but-set-variable]
 4706 |   Int4 cds_left, cds_right;
      |                  ^~~~~~~~~
seqport.c:4706:8: warning: variable ‘cds_left’ set but not used [-Wunused-but-set-variable]
 4706 |   Int4 cds_left, cds_right;
      |        ^~~~~~~~
seqport.c: In function ‘DeltaRevComp’:
seqport.c:5388:21: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable]
 5388 |   DeltaSeqPtr  dsp, dspnext;
      |                     ^~~~~~~
seqport.c: In function ‘SeqSearchEnterNucWord’:
seqport.c:6943:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable]
 6943 |   Int2     next, patLen, state;
      |                  ^~~~~~
seqport.c: In function ‘ProtSearchEnterProtWord’:
seqport.c:7817:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable]
 7817 |   Int2     next, patLen, state;
      |                  ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqport.c:62:
seqport.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sequtil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from sequtil.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequtil.c: In function ‘GetPointsForLeftAndRightOffsets’:
sequtil.c:7994:11: warning: variable ‘first_strand’ set but not used [-Wunused-but-set-variable]
 7994 |     Uint1 first_strand, last_strand;
      |           ^~~~~~~~~~~~
sequtil.c: In function ‘SeqPointWriteEx’:
sequtil.c:8532:15: warning: variable ‘fuzzlen’ set but not used [-Wunused-but-set-variable]
 8532 |     Int4      fuzzlen, id_len;
      |               ^~~~~~~
sequtil.c: In function ‘TaxNameFromCommon’:
sequtil.c:8687:42: warning: missing braces around initializer [-Wmissing-braces]
 8687 |     static Nlm_TaxCommon taxcommon[40] = {
      |                                          ^
 8688 |     "Chinese hamsters", "Cricetulus sp."
      |     {
 8689 |     ,"Syrian golden hamsters", "Mesocricetus auratus"
      |     }{
 8690 |     ,"Syrian hamsters", "Mesocricetus sp."
      |     }{
 8691 |     ,"barley", "Hordeum sp."
      |     }{
 8692 |     ,"carrots", "Daucus sp."
      |     }{
 8693 |     ,"cats", "Felis sp."
      |     }{
 8694 |     ,"cattles", "Bos sp."
      |     }{
 8695 |     ,"chickens", "Gallus sp."
      |     }{
 8696 |     ,"chimpanzees", "Pan sp."
      |     }{
 8697 |     ,"chimpanzes", "Pan sp."
      |     }{
 8698 |     ,"corn", "Zea sp."
      |     }{
 8699 |     ,"cucumber", "Cucumis sativus"
      |     }{
 8700 |     ,"dogs", "Canis sp."
      |     }{
 8701 |     ,"goats", "Capra sp."
      |     }{
 8702 |     ,"gorillas", "Gorilla sp."
      |     }{
 8703 |     ,"guinea pigs", "Cavia sp."
      |     }{
 8704 |     ,"hamsters", "Cricetidae gen. sp."
      |     }{
 8705 |     ,"horses", "Equus sp."
      |     }{
 8706 |     ,"humans", "Homo sapiens"
      |     }{
 8707 |     ,"maize", "Zea sp."
      |     }{
 8708 |     ,"mice", "Mus sp."
      |     }{
 8709 |     ,"mouse", "Mus sp."
      |     }{
 8710 |     ,"peas", "Pisum sp."
      |     }{
 8711 |     ,"potatoes", "Solanum sp."
      |     }{
 8712 |     ,"potato", "Solanum sp."
      |     }{
 8713 |     ,"quails", "Phasianidae gen. sp."
      |     }{
 8714 |     ,"rabbits", "Oryctolagus sp."
      |     }{
 8715 |     ,"rats", "Rattus sp."
      |     }{
 8716 |     ,"rices", "Oryza sp."
      |     }{
 8717 |     ,"sheeps", "Ovis sp."
      |     }{
 8718 |     ,"sorghums", "Sorghum sp."
      |     }{
 8719 |     ,"soybeans", "Glycine sp."
      |     }{
 8720 |     ,"spinach", "Spinacia sp."
      |     }{
 8721 |     ,"swine", "Sus sp."
      |     }{
 8722 |     ,"tobacco", "Nicotiania sp."
      |     }{
 8723 |     ,"tomatoes", "Lycopersicon sp."
      |     }{
 8724 |     ,"tomato", "Lycopersicon sp."
      |     }{
 8725 |     ,"turkeys", "Meleagris sp."
      |     }{
 8726 |     ,"wheat", "Triticum sp."
      |     }{
 8727 |     ,"zebrafish", "Brachydanio sp."
      |     }{
 8728 | };
      | }
sequtil.c: In function ‘GetBestScoreAndEvalueFromScorePtr’:
sequtil.c:9510:48: warning: variable ‘sum_set’ set but not used [-Wunused-but-set-variable]
 9510 |     Boolean score_set=FALSE, evalue_set=FALSE, sum_set=FALSE, bit_set=FALSE;
      |                                                ^~~~~~~
sequtil.c: In function ‘SeqIdFromAccessionEx’:
sequtil.c:10110:38: warning: variable ‘sip2’ set but not used [-Wunused-but-set-variable]
10110 |                             SeqIdPtr sip2;
      |                                      ^~~~
sequtil.c: In function ‘GetThePointForOffsetEx’:
sequtil.c:7954:14: warning: ‘last_strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7954 |           if (last_strand == Seq_strand_minus)
      |              ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prtutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from ../include/prtutil.h:69,
                 from prtutil.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prtutil.c: In function ‘StdFormatPrint’:
prtutil.c:1422:10: warning: unused variable ‘ptr’ [-Wunused-variable]
 1422 |  CharPtr ptr = NULL;
      |          ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF simple.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/simple.h:63,
                 from simple.c:68:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from simple.c:69:
../include/all.h:7293: warning: "RNA_QUAL" redefined
 7293 | #define RNA_QUAL &at[2254]
      | 
../include/all.h:5823: note: this is the location of the previous definition
 5823 | #define RNA_QUAL &at[1025]
      | 
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofasta.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from tofasta.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tofasta.c: In function ‘DoSpecialDefline’:
tofasta.c:1461:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable]
 1461 |   SeqFeatPtr         gene = NULL;
      |                      ^~~~
tofasta.c: In function ‘FastaIdEx’:
tofasta.c:3100:15: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable]
 3100 |     SeqIdPtr  sip;
      |               ^~~
tofasta.c: In function ‘CreateDefLineExEx’:
tofasta.c:4991:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4991 |             if (vnp != NULL)
      |             ^~
tofasta.c:4993:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4993 |               if (title != NULL) {
      |               ^~
tofasta.c: In function ‘x_SetSuffix’:
tofasta.c:8313:24: warning: variable ‘buf2’ set but not used [-Wunused-but-set-variable]
 8313 |   Char     buf1 [512], buf2 [256];
      |                        ^~~~
tofasta.c: In function ‘FastaToSeqEntryInternalExEx’:
tofasta.c:2838:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2838 |         fgets(buffer+1, BuffSize, fd);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tofasta.c:2863:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2863 |             fgets(buffer+i+1, FTSE_BUFF_CHUNK, fd);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
tofasta.c:8058:17: warning: ‘x_StringInList’ defined but not used [-Wunused-function]
 8058 |  static Boolean x_StringInList (
      |                 ^~~~~~~~~~~~~~
tofasta.c:3661:19: warning: ‘GatherGenesForCDS’ defined but not used [-Wunused-function]
 3661 | static ValNodePtr GatherGenesForCDS(SeqLocPtr slp)
      |                   ^~~~~~~~~~~~~~~~~
tofasta.c:3627:19: warning: ‘GatherSeqFeatProt’ defined but not used [-Wunused-function]
 3627 | static SeqFeatPtr GatherSeqFeatProt(BioseqPtr bsp)
      |                   ^~~~~~~~~~~~~~~~~
tofasta.c:3541:19: warning: ‘GetCDSProtUnindexed’ defined but not used [-Wunused-function]
 3541 | static SeqFeatPtr GetCDSProtUnindexed (
      |                   ^~~~~~~~~~~~~~~~~~~
tofasta.c:3378:19: warning: ‘IndexedGatherDescrOnBioseq’ defined but not used [-Wunused-function]
 3378 | static ValNodePtr IndexedGatherDescrOnBioseq (ItemInfoPtr iip, BioseqPtr bsp, Uint1 choice)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~
tofasta.c:3283:16: warning: ‘get_descr’ defined but not used [-Wunused-function]
 3283 | static Boolean get_descr (GatherContextPtr gcp)
      |                ^~~~~~~~~
tofasta.c:3254:16: warning: ‘get_descr_on_top’ defined but not used [-Wunused-function]
 3254 | static Boolean get_descr_on_top (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~~~
tofasta.c: In function ‘FastaReadSequenceInternalEx’:
tofasta.c:2713:27: warning: ‘mask_to’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2713 |             mask_sint->to = mask_to;
      |             ~~~~~~~~~~~~~~^~~~~~~~~
tofasta.c: In function ‘FastaToSeqEntryInternalExEx’:
tofasta.c:2866:29: warning: ‘firstchar’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2866 |             for(i =0; (ch = *firstchar) != NULLB; firstchar++, i++) {
      |                             ^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofile.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tofile.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tomedlin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from tomedlin.c:153:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valid.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from valid.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valid.c: In function ‘GetUserFieldValueString’:
valid.c:2212:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 2212 |     sprintf (buf, "%d", ufp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
valid.c: In function ‘ValidateSeqIdCase’:
valid.c:3574:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
 3574 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘ValidateGenProdSet’:
valid.c:6046:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 6046 |   GeneRefPtr      grp;
      |                   ^~~
valid.c: In function ‘CountAdjacentProc’:
valid.c:6730:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
 6730 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘CheckBioseqEndsForNAndGap’:
valid.c:7040:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 7040 |       if (str [0] == 'n' || str [0] == 'N' && begin_n != NULL) {
      |                                            ^
valid.c:7061:56: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 7061 |       if (str [len - 1] == 'n' || str [len - 1] == 'N' && end_n != NULL) {
      |                                                        ^
valid.c: In function ‘ValidateBioseqInst’:
valid.c:7341:19: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable]
 7341 |   Uint1           tech;
      |                   ^~~~
valid.c:7278:19: warning: variable ‘prot’ set but not used [-Wunused-but-set-variable]
 7278 |   SeqFeatPtr      prot;
      |                   ^~~~
valid.c: In function ‘FixOrgModVoucher’:
valid.c:13882:22: warning: unused variable ‘allowed_type’ [-Wunused-variable]
13882 |   Uint1    type = 0, allowed_type = 0;
      |                      ^~~~~~~~~~~~
valid.c: In function ‘ValidateBioSource’:
valid.c:15514:19: warning: variable ‘isMicrosporidia’ set but not used [-Wunused-but-set-variable]
15514 |   Boolean         isMicrosporidia = FALSE;
      |                   ^~~~~~~~~~~~~~~
valid.c:15512:19: warning: variable ‘isEukaryote’ set but not used [-Wunused-but-set-variable]
15512 |   Boolean         isEukaryote = FALSE;
      |                   ^~~~~~~~~~~
valid.c:15503:19: warning: variable ‘id’ set but not used [-Wunused-but-set-variable]
15503 |   Int4            id;
      |                   ^~
valid.c: In function ‘ValidateDblink’:
valid.c:16786:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
16786 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘ValidateSeqDescrCommon’:
valid.c:16883:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable]
16883 |   PubdescPtr      pdp;
      |                   ^~~
valid.c: In function ‘GetFeatsInGaps’:
valid.c:18858:21: warning: variable ‘realBases’ set but not used [-Wunused-but-set-variable]
18858 |   Int4              realBases;
      |                     ^~~~~~~~~
valid.c:18857:21: warning: variable ‘plusses’ set but not used [-Wunused-but-set-variable]
18857 |   Int4              plusses;
      |                     ^~~~~~~
valid.c:18854:21: warning: variable ‘Ns’ set but not used [-Wunused-but-set-variable]
18854 |   Int4              Ns;
      |                     ^~
valid.c:18851:21: warning: variable ‘dashes’ set but not used [-Wunused-but-set-variable]
18851 |   Int4              dashes;
      |                     ^~~~~~
valid.c: In function ‘ValidateBioseqContextIndexed’:
valid.c:20267:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
20267 |   if (bvsp->is_mrna || cdscount == 1 && genecount < 2) {
      |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
valid.c:19476:65: warning: variable ‘cdsmgene’ set but not used [-Wunused-but-set-variable]
19476 |   SeqFeatPtr         utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene;
      |                                                                 ^~~~~~~~
valid.c:19476:33: warning: variable ‘cdspgene’ set but not used [-Wunused-but-set-variable]
19476 |   SeqFeatPtr         utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene;
      |                                 ^~~~~~~~
valid.c:19475:51: warning: variable ‘utr5minus’ set but not used [-Wunused-but-set-variable]
19475 |   SeqFeatPtr         utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus;
      |                                                   ^~~~~~~~~
valid.c:19475:41: warning: variable ‘utr3plus’ set but not used [-Wunused-but-set-variable]
19475 |   SeqFeatPtr         utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus;
      |                                         ^~~~~~~~
valid.c:19442:41: warning: variable ‘utr3gene’ set but not used [-Wunused-but-set-variable]
19442 |   SeqFeatPtr         cdsgene, utr5gene, utr3gene;
      |                                         ^~~~~~~~
valid.c: In function ‘ReportBadWGSGap’:
valid.c:21153:18: warning: unused variable ‘is_wgs’ [-Wunused-variable]
21153 |     Boolean      is_wgs = FALSE;
      |                  ^~~~~~
valid.c: In function ‘ValidateBarcodeIndexNumber’:
valid.c:21432:21: warning: variable ‘bin_len’ set but not used [-Wunused-but-set-variable]
21432 |   Int4              bin_len;
      |                     ^~~~~~~
valid.c: In function ‘ValidateRptUnit’:
valid.c:23411:32: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
23411 |   Boolean            badchars, found, just_nuc_letters, multi_rpt_unit, in_range;
      |                                ^~~~~
valid.c: In function ‘CheckForCommonCDSProduct’:
valid.c:25628:19: warning: variable ‘is_nw’ set but not used [-Wunused-but-set-variable]
25628 |   Boolean         is_nw = FALSE;
      |                   ^~~~~
valid.c:25625:19: warning: variable ‘is_nc’ set but not used [-Wunused-but-set-variable]
25625 |   Boolean         is_nc = FALSE;
      |                   ^~~~~
valid.c: In function ‘CheckForIllegalDbxref’:
valid.c:26017:16: warning: variable ‘id’ set but not used [-Wunused-but-set-variable]
26017 |   Int4         id;
      |                ^~
valid.c: In function ‘ValidateAnticodon’:
valid.c:26781:53: warning: variable ‘circular’ set but not used [-Wunused-but-set-variable]
26781 |                   ordered = TRUE, adjacent = FALSE, circular = FALSE, exception = FALSE;
      |                                                     ^~~~~~~~
valid.c:26780:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
26780 |   Boolean         retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
      |                   ^~~~~~
valid.c: In function ‘IsGeneXrefRedundant’:
valid.c:28000:17: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
28000 |   Int2          count;
      |                 ^~~~~
valid.c: In function ‘ValidateSeqFeat’:
valid.c:28328:19: warning: unused variable ‘is_nc’ [-Wunused-variable]
28328 |   Boolean         is_nc = FALSE;
      |                   ^~~~~
valid.c:28308:19: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
28308 |   Int2            count;
      |                   ^~~~~
valid.c:28286:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable]
28286 |   PubdescPtr      pdp;
      |                   ^~~
valid.c: In function ‘CdTransCheck’:
valid.c:30490:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
30490 |   GeneRefPtr      grp;
      |                   ^~~
valid.c: In function ‘SpliceCheckEx’:
valid.c:31313:19: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
31313 |   SeqEntryPtr     sep;
      |                   ^~~
valid.c: In function ‘CdsProductIdCheck’:
valid.c:31689:15: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
31689 |   GeneRefPtr  grp;
      |               ^~~
valid.c: In function ‘ValidateSeqLoc’:
valid.c:31754:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
31754 |   Boolean         retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
      |                   ^~~~~~
valid.c:31753:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
31753 |   SeqLocPtr       tmp, prev;
      |                        ^~~~
valid.c: In function ‘SortSeqGraphProc’:
valid.c:32156:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
32156 |   } else if (gip2->right < gip2->right) {
      |                          ^
At top level:
valid.c:30138:13: warning: ‘ValidateTranslExcept’ defined but not used [-Wunused-function]
30138 | static void ValidateTranslExcept (
      |             ^~~~~~~~~~~~~~~~~~~~
valid.c:27650:16: warning: ‘CouldExtendPartial’ defined but not used [-Wunused-function]
27650 | static Boolean CouldExtendPartial (SeqLocPtr slp, Boolean partial5)
      |                ^~~~~~~~~~~~~~~~~~
valid.c:20878:28: warning: ‘MultiGeneOverlapFree’ defined but not used [-Wunused-function]
20878 | static MultiGeneOverlapPtr MultiGeneOverlapFree (MultiGeneOverlapPtr m)
      |                            ^~~~~~~~~~~~~~~~~~~~
valid.c:20828:19: warning: ‘ListFeaturesContainedInLocation’ defined but not used [-Wunused-function]
20828 | static ValNodePtr ListFeaturesContainedInLocation (BioseqPtr bsp, SeqLocPtr slp, Uint1 seqfeatChoice, Uint1 featdefChoice)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
valid.c:17541:16: warning: ‘IsEMBLAccn’ defined but not used [-Wunused-function]
17541 | static Boolean IsEMBLAccn (SeqEntryPtr sep, SeqLocPtr location)
      |                ^~~~~~~~~~
valid.c:14642:16: warning: ‘CountryIsClosestToLatLon’ defined but not used [-Wunused-function]
14642 | static Boolean CountryIsClosestToLatLon (
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
valid.c:14545:16: warning: ‘LatLonInRange’ defined but not used [-Wunused-function]
14545 | static Boolean LatLonInRange (
      |                ^~~~~~~~~~~~~
valid.c:13478:16: warning: ‘LatLonIsValid’ defined but not used [-Wunused-function]
13478 | static Boolean LatLonIsValid (CharPtr name)
      |                ^~~~~~~~~~~~~
valid.c:10462:16: warning: ‘ConsistentWithC’ defined but not used [-Wunused-function]
10462 | static Boolean ConsistentWithC (Char ch)
      |                ^~~~~~~~~~~~~~~
valid.c:6952:13: warning: ‘ReportLongSeqId’ defined but not used [-Wunused-function]
 6952 | static void ReportLongSeqId (SeqIdPtr sip, ValidStructPtr vsp, Int4 max_len)
      |             ^~~~~~~~~~~~~~~
valid.c:5932:13: warning: ‘CheckMutSetSources’ defined but not used [-Wunused-function]
 5932 | static void CheckMutSetSources (BioSourcePtr biop, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~
valid.c:4360:13: warning: ‘FindLongIdsThatCollideWhenTruncated’ defined but not used [-Wunused-function]
 4360 | static void FindLongIdsThatCollideWhenTruncated (SeqEntryPtr sep, ValidStructPtr vsp, Int4 trunc_len)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
valid.c:1511:16: warning: ‘IsNotUnclassifiedExcept’ defined but not used [-Wunused-function]
 1511 | static Boolean IsNotUnclassifiedExcept (ValidStructPtr vsp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from valapi.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valapi.c: In function ‘DoesStringMatchExpression’:
valapi.c:263:15: warning: variable ‘errstr’ set but not used [-Wunused-but-set-variable]
  263 |   const char *errstr;
      |               ^~~~~~
valapi.c: In function ‘DoesFieldValueMatchExpression’:
valapi.c:292:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
  292 |     sprintf (buf, "%d", ufp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/alignmgr.h:261,
                 from alignmgr.c:584:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignmgr.c: In function ‘AlnMgrIndexParentSA’:
alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1607 |       sap->saip = (Pointer)AMAlignIndexFree(amaip);
      |                   ^
alignmgr.c: In function ‘AlnMgrGetNthBlockRange’:
alignmgr.c:4182:21: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable]
 4182 |    AMAlignIndexPtr  amaip;
      |                     ^~~~~
alignmgr.c: In function ‘AlnMgrMakeFakeMultipleEx’:
alignmgr.c:5157:21: warning: variable ‘nogap’ set but not used [-Wunused-but-set-variable]
 5157 |    Boolean          nogap;
      |                     ^~~~~
alignmgr.c: In function ‘AlnMgrMapBioseqToBioseq’:
alignmgr.c:10840:19: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
10840 |             Uint1 gap;
      |                   ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from alignmgr.c:584:
alignmgr.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignmgr.c:10572:16: warning: ‘am_merge_after_edit’ defined but not used [-Wunused-function]
10572 | static Boolean am_merge_after_edit (SeqAlignPtr sap)
      |                ^~~~~~~~~~~~~~~~~~~
alignmgr.c:6650:16: warning: ‘AlnMgrJaggedIndex’ defined but not used [-Wunused-function]
 6650 | static Boolean AlnMgrJaggedIndex(SeqAlignPtr sap, AMmsmsPtr ams_head, AMmsmsPtr *ams_mhead, Int4 numrows)
      |                ^~~~~~~~~~~~~~~~~
alignmgr.c:6123:18: warning: ‘AlnMgrConstructOverlaps’ defined but not used [-Wunused-function]
 6123 | static AMmsmsPtr AlnMgrConstructOverlaps(AMmsmsPtr ams_head)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c:5405:13: warning: ‘AlnMgrMergeNeighbors’ defined but not used [-Wunused-function]
 5405 | static void AlnMgrMergeNeighbors(SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrUnpackSeqAlign’:
alignmgr.c:1149:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1149 |             sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘am_print_seqalign_indexes’:
alignmgr.c:2416:30: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2416 |             for (j=0; j<(saip->ssdp[i]->numsect); j++)
      |                          ~~~~^~~~~~
alignmgr.c:2481:34: warning: ‘amaip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2481 |                for (j=0; j<(amaip->amadp[i]->numseg); j++)
      |                             ~~~~~^~~~~~~
alignmgr.c: In function ‘AlnMgrGetNthSeqRangeInSA’:
alignmgr.c:4115:19: warning: ‘tmp_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4115 |             *stop = tmp_end;
      |             ~~~~~~^~~~~~~~~
alignmgr.c:4113:20: warning: ‘tmp_beg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4113 |             *start = tmp_beg;
      |             ~~~~~~~^~~~~~~~~
alignmgr.c: In function ‘AlnMgrDeleteNthRow’:
alignmgr.c:9809:31: warning: ‘abp_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9809 |                abp_prev->next = abp;
      |                ~~~~~~~~~~~~~~~^~~~~
alignmgr.c: In function ‘AlnMgrGetSubAlign’:
alignmgr.c:9097:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9097 |          salp = am_cleanupsalp(salp);
      |                 ^~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrMakeMultByIntersectOnMaster’:
alignmgr.c:5592:4: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5592 |    SeqIdFree(sip_tmp);
      |    ^~~~~~~~~~~~~~~~~~
alignmgr.c:5865:10: warning: ‘sip_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5865 |    while (sip && !done)
      |          ^
alignmgr.c:5845:18: note: ‘sip_head’ was declared here
 5845 |    SeqIdPtr      sip_head;
      |                  ^~~~~~~~
alignmgr.c:5881:16: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5881 |          while (sip_tmp != NULL && !here)
      |                ^
alignmgr.c:5846:18: note: ‘sip_tmp’ was declared here
 5846 |    SeqIdPtr      sip_tmp;
      |                  ^~~~~~~
alignmgr.c: In function ‘am_is_consistent’:
alignmgr.c:10114:13: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10114 |             AlnMgrGetNthUnalignedForNthRow(sap, n, i, &u_start, &u_stop);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliparse.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/aliparse.h:12,
                 from aliparse.c:9:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
aliparse.c: In function ‘s_IsInterleaved’:
aliparse.c:929:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  929 |   (s_configInfo.useMaybes == FALSE) &&
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
  930 |   (seqLinePtr->maybe == FALSE))
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~       
aliparse.c:823:20: warning: variable ‘isMaybe’ set but not used [-Wunused-but-set-variable]
  823 |   Boolean          isMaybe;
      |                    ^~~~~~~
aliparse.c: In function ‘s_ProcessInterId’:
aliparse.c:1000:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1000 |   ErrInfoPtr  errPtr;
      |               ^~~~~~
aliparse.c: In function ‘s_ProcessInterSeq’:
aliparse.c:1090:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1090 |   ErrInfoPtr  errPtr = NULL;
      |               ^~~~~~
aliparse.c: In function ‘s_AnalyzeInterleaved’:
aliparse.c:1193:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1193 |        (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c: In function ‘s_ProcessContigId’:
aliparse.c:1385:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1385 |   ErrInfoPtr     errPtr;
      |                  ^~~~~~
aliparse.c: In function ‘s_ProcessContigSeq’:
aliparse.c:1476:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1476 |   ErrInfoPtr     errPtr;
      |                  ^~~~~~
aliparse.c: In function ‘s_AnalyzeContiguous’:
aliparse.c:1603:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1603 |        (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c: In function ‘s_CheckContext’:
aliparse.c:2150:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2150 |     (seqLinePtr->maybe == TRUE) &&
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
 2151 |     (s_configInfo.useMaybes == TRUE))
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c:2131:20: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 2131 |   ErrInfoPtr       errPtr;
      |                    ^~~~~~
aliparse.c: In function ‘PrintOutMultAlign’:
aliparse.c:3161:10: warning: statement with no effect [-Wunused-value]
 3161 |          for (d; d<spacer; d++)
      |          ^~~
aliparse.c: In function ‘ALI_ConvertToNCBIData’:
aliparse.c:3227:17: warning: variable ‘sdp’ set but not used [-Wunused-but-set-variable]
 3227 |    SeqDescrPtr  sdp;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from aliparse.c:9:
aliparse.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
aliparse.c:57:18: warning: ‘s_SegCompare’ declared ‘static’ but never defined [-Wunused-function]
   57 | static int       s_SegCompare(const void *i,
      |                  ^~~~~~~~~~~~
aliparse.c:3186:13: warning: ‘PrintOutSegs’ defined but not used [-Wunused-function]
 3186 | static void PrintOutSegs(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~
aliparse.c:3130:13: warning: ‘PrintOutMultAlign’ defined but not used [-Wunused-function]
 3130 | static void PrintOutMultAlign(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~
aliparse.c:449:13: warning: ‘s_FreeRowList’ defined but not used [-Wunused-function]
  449 | static void s_FreeRowList (ValNodePtr rowList)
      |             ^~~~~~~~~~~~~
aliparse.c: In function ‘s_ProcessMaybes’:
aliparse.c:696:21: warning: ‘lastSeqPart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  696 |   lastSeqPart->next = newSeqPart;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/aliparse.h:12,
                 from aliparse.c:9:
../include/ncbistr.h:337:19: warning: ‘currentIdStr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  337 | #define StringCmp Nlm_StringCmp
      |                   ^~~~~~~~~~~~~
aliparse.c:631:18: note: ‘currentIdStr’ was declared here
  631 |   CharPtr        currentIdStr;
      |                  ^~~~~~~~~~~~
aliparse.c: In function ‘Ali_Read’:
aliparse.c:1355:16: warning: ‘previousLength’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1355 |       errPtr = Ali_AddError (&(fileInfoPtr->errors),ERR_SEQ_LENGTH_MISMATCH,
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1356 |         previousLength,
      |         ~~~~~~~~~~~~~~~
 1357 |         s_configInfo.declaredInfo.seqLength);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c:1154:20: note: ‘previousLength’ was declared here
 1154 |   Int4             previousLength;
      |                    ^~~~~~~~~~~~~~
aliparse.c:927:18: warning: ‘seqLinePtr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  927 |    if (seqLinePtr->sequence != NULL)
      |        ~~~~~~~~~~^~~~~~~~~~
aliparse.c:820:20: note: ‘seqLinePtr’ was declared here
  820 |   SeqLineInfoPtr   seqLinePtr;
      |                    ^~~~~~~~~~
aliparse.c:748:3: warning: ‘cLineType’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  748 |   fprintf(stderr,"%04d: SEQUENCE[%c] : %s\n",
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  749 |    seqLinePtr->rowNum,
      |    ~~~~~~~~~~~~~~~~~~~
  750 |    cLineType,
      |    ~~~~~~~~~~
  751 |    seqLinePtr->sequence);
      |    ~~~~~~~~~~~~~~~~~~~~~
aliparse.c:723:20: note: ‘cLineType’ was declared here
  723 |   Char             cLineType;
      |                    ^~~~~~~~~
aliparse.c: In function ‘ALI_ConvertToNCBIData’:
aliparse.c:3276:4: warning: ‘sep_new’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3276 |    SeqAlignAddInSeqEntry (sep_head, sanp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliread.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from aliread.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from aliread.c:6:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignval.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignval.c: In function ‘ValidateSeqlengthInDenseSeg’:
alignval.c:1267:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1267 |               if(stptrtemp[j+i*aligndim]+lenptrtemp[i]>bslen)
      |                 ^
alignval.c: In function ‘PercentStringMatch’:
alignval.c:1579:32: warning: variable ‘max_len’ set but not used [-Wunused-but-set-variable]
 1579 |   Int4 len1, len2, min_len, k, max_len;
      |                                ^~~~~~~
alignval.c: In function ‘CheckAlnSeqLens’:
alignval.c:2004:12: warning: variable ‘aln_len’ set but not used [-Wunused-but-set-variable]
 2004 |   Int4     aln_len, start, stop;
      |            ^~~~~~~
alignval.c: In function ‘ValidateSeqAlign’:
alignval.c:2125:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable]
 2125 |   MsgAnswer    ans;
      |                ^~~
alignval.c: In function ‘GetAlignmentColumnPercentIdentities’:
alignval.c:2511:14: warning: variable ‘num_match’ set but not used [-Wunused-but-set-variable]
 2511 |   Int4       num_match;
      |              ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from alignval.c:57:
alignval.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignval.c:2002:13: warning: ‘CheckAlnSeqLens’ defined but not used [-Wunused-function]
 2002 | static void CheckAlnSeqLens (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~
alignval.c:1560:16: warning: ‘IsSipContainedInStdseg’ defined but not used [-Wunused-function]
 1560 | static Boolean IsSipContainedInStdseg(SeqIdPtr sip, StdSegPtr ssp)
      |                ^~~~~~~~~~~~~~~~~~~~~~
alignval.c:602:13: warning: ‘delete_bioseqs’ defined but not used [-Wunused-function]
  602 | static void delete_bioseqs (ValNodePtr ids, Uint2 entityID)
      |             ^~~~~~~~~~~~~~
alignval.c: In function ‘ValMessage’:
alignval.c:465:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=]
  465 |       sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence.  Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3);
      |                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignval.c:448:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=]
  448 |       sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence.  Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3);
      |                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil1.c: In function ‘GeneExtendFunc’:
sqnutil1.c:2012:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 2012 |   GeneRefPtr     grp;
      |                  ^~~
sqnutil1.c: In function ‘ParseAnticodon’:
sqnutil1.c:3494:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 3494 |   Uint1      strand;
      |              ^~~~~~
sqnutil1.c: In function ‘ParseCodeBreak’:
sqnutil1.c:3617:17: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 3617 |   Uint1         strand;
      |                 ^~~~~~
sqnutil1.c: In function ‘CleanUpPubdescAuthors’:
sqnutil1.c:9093:20: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 9093 |   ValNodePtr PNTR  prev;
      |                    ^~~~
sqnutil1.c: In function ‘FixWrongFuzzOnPlusStrand’:
sqnutil1.c:11948:15: warning: unused variable ‘spp’ [-Wunused-variable]
11948 |   SeqPntPtr   spp;
      |               ^~~
sqnutil1.c: In function ‘FixWrongFuzzOnMinusStrand’:
sqnutil1.c:12007:15: warning: unused variable ‘spp’ [-Wunused-variable]
12007 |   SeqPntPtr   spp;
      |               ^~~
sqnutil1.c: In function ‘ConsolidateBioSourceNotes’:
sqnutil1.c:13250:21: warning: variable ‘note_mod’ set but not used [-Wunused-but-set-variable]
13250 |   OrgModPtr    mod, note_mod;
      |                     ^~~~~~~~
sqnutil1.c:13249:21: warning: variable ‘note_ssp’ set but not used [-Wunused-but-set-variable]
13249 |   SubSourcePtr ssp, note_ssp;
      |                     ^~~~~~~~
sqnutil1.c: In function ‘RemoveUnnecessaryGeneXrefs’:
sqnutil1.c:15059:24: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
15059 |   Int2                 count;
      |                        ^~~~~
sqnutil1.c: In function ‘LinkTwoFeatures’:
sqnutil1.c:17930:25: warning: variable ‘prev_xref’ set but not used [-Wunused-but-set-variable]
17930 |   SeqFeatXrefPtr  xref, prev_xref, next_xref;
      |                         ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil1.c:63:
sqnutil1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil1.c:10386:16: warning: ‘CleanUpSgml’ defined but not used [-Wunused-function]
10386 | static CharPtr CleanUpSgml (
      |                ^~~~~~~~~~~
sqnutil1.c:10272:13: warning: ‘SortGoTermsSfp’ defined but not used [-Wunused-function]
10272 | static void SortGoTermsSfp (
      |             ^~~~~~~~~~~~~~
sqnutil1.c:7405:16: warning: ‘IsStringSingleToken’ defined but not used [-Wunused-function]
 7405 | static Boolean IsStringSingleToken (CharPtr str)
      |                ^~~~~~~~~~~~~~~~~~~
sqnutil1.c:4942:13: warning: ‘CleanupConsSplice’ defined but not used [-Wunused-function]
 4942 | static void CleanupConsSplice (GBQualPtr gbq)
      |             ^~~~~~~~~~~~~~~~~
sqnutil1.c:2007:16: warning: ‘GeneExtendFunc’ defined but not used [-Wunused-function]
 2007 | static Boolean GeneExtendFunc (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil2.c: In function ‘FindResidueByName’:
sqnutil2.c:5223:11: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
 5223 |   Uint1   last;
      |           ^~~~
sqnutil2.c: In function ‘ReadFeatureTableEx’:
sqnutil2.c:7254:18: warning: variable ‘isnote’ set but not used [-Wunused-but-set-variable]
 7254 |   Boolean        isnote;
      |                  ^~~~~~
sqnutil2.c:7246:18: warning: variable ‘endsinspace’ set but not used [-Wunused-but-set-variable]
 7246 |   Boolean        endsinspace;
      |                  ^~~~~~~~~~~
sqnutil2.c: In function ‘SeqEntryCopyReplace’:
sqnutil2.c:9270:8: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
 9270 |  Uint1 type = 0;
      |        ^~~~
sqnutil2.c: In function ‘StreamingReadBioseq’:
sqnutil2.c:10095:10: warning: variable ‘level’ set but not used [-Wunused-but-set-variable]
10095 |     Int2 level;
      |          ^~~~~
sqnutil2.c: In function ‘StreamAsnForDescriptors’:
sqnutil2.c:10328:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
10328 |     while (rval = StreamingReadSeqEntry (aip, sp, &sr)) {
      |            ^~~~
sqnutil2.c: In function ‘WriteAsnWithReplacedDescriptors’:
sqnutil2.c:10749:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
10749 |     while (rval = StreamingReadWriteSeqEntry(desc_stream_list, aip_in, aip_out, sp)) {
      |            ^~~~
sqnutil2.c: In function ‘ReadFeatureTableFile’:
sqnutil2.c:11700:18: warning: variable ‘begin’ set but not used [-Wunused-but-set-variable]
11700 |   Int4           begin;
      |                  ^~~~~
sqnutil2.c: In function ‘ReadFastaOnly’:
sqnutil2.c:11894:18: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable]
11894 |   Char           seqid [2048];
      |                  ^~~~~
sqnutil2.c: In function ‘ReadDeltaFastaWithEmptyDefline’:
sqnutil2.c:12446:29: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable]
12446 |   Char         line [4096], seqid [2048];
      |                             ^~~~~
sqnutil2.c: In function ‘SortSeqGraphProc’:
sqnutil2.c:13002:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
13002 |   } else if (gip2->right < gip2->right) {
      |                          ^
sqnutil2.c: In function ‘PrintQualityScoresToBuffer’:
sqnutil2.c:13052:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
13052 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil2.c: In function ‘GetScoresbySeqId’:
sqnutil2.c:13461:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
13461 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil2.c: In function ‘RemoveGapsFromDeltaLocation’:
sqnutil2.c:15480:15: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
15480 |   Uint1       strand;
      |               ^~~~~~
sqnutil2.c: In function ‘IsStringInSpanInList’:
sqnutil2.c:16693:11: warning: variable ‘str_val’ set but not used [-Wunused-but-set-variable]
16693 |   Int4    str_val;
      |           ^~~~~~~
sqnutil2.c:16691:27: warning: variable ‘suffix_len’ set but not used [-Wunused-but-set-variable]
16691 |   Int4    prefix_len = 0, suffix_len;
      |                           ^~~~~~~~~~
sqnutil2.c: In function ‘CreateStructuredCommentsFromFile’:
sqnutil2.c:18415:35: warning: variable ‘vnp_h’ set but not used [-Wunused-but-set-variable]
18415 |   ValNodePtr table, header, line, vnp_h, vnp_l, tmp;
      |                                   ^~~~~
sqnutil2.c: In function ‘AlignmentIntervalToString’:
sqnutil2.c:18779:14: warning: variable ‘target_strand’ set but not used [-Wunused-but-set-variable]
18779 |   Uint1      target_strand;
      |              ^~~~~~~~~~~~~
sqnutil2.c:18778:14: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable]
18778 |   Int4       seq_len;
      |              ^~~~~~~
sqnutil2.c: In function ‘AdjustForConsensusSpliceCallback’:
sqnutil2.c:20313:33: warning: variable ‘partial5_last’ set but not used [-Wunused-but-set-variable]
20313 |   Boolean   partial5, partial3, partial5_last, partial3_last, first = TRUE;
      |                                 ^~~~~~~~~~~~~
sqnutil2.c: In function ‘RemoveGIProc’:
sqnutil2.c:20926:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
20926 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sqnutil2.c: In function ‘RemoveBadCodonRecognizedCallback’:
sqnutil2.c:22812:13: warning: variable ‘rcodon’ set but not used [-Wunused-but-set-variable]
22812 |   Uint1     rcodon [4];
      |             ^~~~~~
sqnutil2.c: In function ‘CompareStructuredComment’:
sqnutil2.c:25151:23: warning: variable ‘ovp2’ set but not used [-Wunused-but-set-variable]
25151 |   ObjValNodePtr ovp1, ovp2;
      |                       ^~~~
sqnutil2.c:25151:17: warning: variable ‘ovp1’ set but not used [-Wunused-but-set-variable]
25151 |   ObjValNodePtr ovp1, ovp2;
      |                 ^~~~
sqnutil2.c: In function ‘UniqueAndCountValNodeCS’:
sqnutil2.c:25546:17: warning: variable ‘curr’ set but not used [-Wunused-but-set-variable]
25546 |   ValNodePtr    curr;
      |                 ^~~~
sqnutil2.c: In function ‘PerformArticleQuery’:
sqnutil2.c:25810:20: warning: variable ‘debug_mode’ set but not used [-Wunused-but-set-variable]
25810 |   Boolean          debug_mode = FALSE;
      |                    ^~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil2.c:58:
sqnutil2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil2.c:18065:19: warning: ‘AuthAffilListFree’ defined but not used [-Wunused-function]
18065 | static ValNodePtr AuthAffilListFree (ValNodePtr list)
      |                   ^~~~~~~~~~~~~~~~~
sqnutil2.c:18044:21: warning: ‘AuthAffilNew’ defined but not used [-Wunused-function]
18044 | static AuthAffilPtr AuthAffilNew (CharPtr affil)
      |                     ^~~~~~~~~~~~
sqnutil2.c:16282:19: warning: ‘MakeTranscriptomeIDTokensFromLine’ defined but not used [-Wunused-function]
16282 | static ValNodePtr MakeTranscriptomeIDTokensFromLine (CharPtr line)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c:16188:13: warning: ‘RevCompFeatsOnBioseq’ defined but not used [-Wunused-function]
16188 | static void RevCompFeatsOnBioseq (BioseqPtr bsp)
      |             ^~~~~~~~~~~~~~~~~~~~
sqnutil2.c:8333:16: warning: ‘DoesSeqEntryAccessionMatchList’ defined but not used [-Wunused-function]
 8333 | static Boolean DoesSeqEntryAccessionMatchList (SeqEntryPtr sep, ValNodePtr accn_list)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c:4684:16: warning: ‘IsNonSeqChar’ defined but not used [-Wunused-function]
 4684 | static Boolean IsNonSeqChar (Char ch, Boolean is_prot)
      |                ^~~~~~~~~~~~
sqnutil2.c: In function ‘ReplaceLocalID’:
sqnutil2.c:23605:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 5 and 68 [-Wformat-overflow=]
23605 |   sprintf (tmp, "%s__%d", str, (int) count);
      |                      ^~
sqnutil2.c:23605:17: note: directive argument in the range [-32768, 32767]
23605 |   sprintf (tmp, "%s__%d", str, (int) count);
      |                 ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 72 bytes into a destination of size 70
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘AdjustSeqEntryForConsensusSpliceBioseqCallback’:
sqnutil2.c:20313:48: warning: ‘partial3_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20313 |   Boolean   partial5, partial3, partial5_last, partial3_last, first = TRUE;
      |                                                ^~~~~~~~~~~~~
sqnutil2.c: In function ‘PrintQualityScoresToBuffer’:
sqnutil2.c:13110:54: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 5 and 56 [-Wformat-overflow=]
13110 |   sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title,
      |                                                      ^~~
sqnutil2.c:13110:17: note: directive argument in the range [-2147483647, 2147483647]
13110 |   sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title,
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 32 or more bytes (assuming 93) into a destination of size 84
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil3.c: In function ‘BspLinkCDSmRNAbyOverlap’:
sqnutil3.c:528:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
  528 |   Int2               count;
      |                      ^~~~~
sqnutil3.c: In function ‘CautiousSeqEntryCleanup’:
sqnutil3.c:2178:16: warning: variable ‘taxserver’ set but not used [-Wunused-but-set-variable]
 2178 |   Boolean      taxserver;
      |                ^~~~~~~~~
sqnutil3.c: In function ‘AddGapSeqLit’:
sqnutil3.c:3127:19: warning: unused variable ‘gap_chars’ [-Wunused-variable]
 3127 |   CharPtr         gap_chars = "NNNNNNNNNN"
      |                   ^~~~~~~~~
sqnutil3.c: In function ‘ConvertSegSetsToDeltaSequencesInt’:
sqnutil3.c:3382:26: warning: variable ‘prev_sep’ set but not used [-Wunused-but-set-variable]
 3382 |   SeqEntryPtr   sub_sep, prev_sep, next_sep;
      |                          ^~~~~~~~
sqnutil3.c: In function ‘MakeSequinDataFromAlignmentEx’:
sqnutil3.c:4797:32: warning: variable ‘num_sets’ set but not used [-Wunused-but-set-variable]
 4797 |   Int4        index, curr_seg, num_sets;
      |                                ^~~~~~~~
sqnutil3.c:4791:26: warning: variable ‘salp_last’ set but not used [-Wunused-but-set-variable]
 4791 |   SeqAlignPtr salp_list, salp_last;
      |                          ^~~~~~~~~
sqnutil3.c:4791:15: warning: variable ‘salp_list’ set but not used [-Wunused-but-set-variable]
 4791 |   SeqAlignPtr salp_list, salp_last;
      |               ^~~~~~~~~
sqnutil3.c: In function ‘ConvertContainedCDSToMiscFeat’:
sqnutil3.c:12824:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
12824 |   Uint1      strand;
      |              ^~~~~~
sqnutil3.c: In function ‘OrgNameMatchExceptOldName’:
sqnutil3.c:13713:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
13713 |            || onp2->mgcode != onp2->mgcode
      |                            ^~
sqnutil3.c: In function ‘FindMismatchedCitSubAffiliations’:
sqnutil3.c:19281:14: warning: variable ‘has_seq_submit’ set but not used [-Wunused-but-set-variable]
19281 |   Boolean    has_seq_submit = TRUE;
      |              ^~~~~~~~~~~~~~
sqnutil3.c: In function ‘GetCDSformRNA’:
sqnutil3.c:20267:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
20267 |   Int2 count;
      |        ^~~~~
sqnutil3.c: In function ‘FindTextInFlatfileOncaller’:
sqnutil3.c:22140:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable]
22140 |   Boolean         okay;
      |                   ^~~~
sqnutil3.c: In function ‘CheckForTitleAuthorConflicts’:
sqnutil3.c:23168:14: warning: variable ‘author_conflict’ set but not used [-Wunused-but-set-variable]
23168 |   Boolean    author_conflict = FALSE;
      |              ^~~~~~~~~~~~~~~
sqnutil3.c: In function ‘SortVnpByBspProjectId’:
sqnutil3.c:26956:31: warning: the comparison will always evaluate as ‘true’ for the address of ‘vnp2’ will never be NULL [-Waddress]
26956 |     if (vnp1 != NULL &&& vnp2 != NULL) {
      |                               ^~
sqnutil3.c: In function ‘GetDiscrepancyItemTextEx’:
sqnutil3.c:31033:21: warning: variable ‘special_flag’ set but not used [-Wunused-but-set-variable]
31033 |   Boolean           special_flag = FALSE;
      |                     ^~~~~~~~~~~~
sqnutil3.c: In function ‘CollectionDateIsInTheFuture’:
sqnutil3.c:34586:20: warning: variable ‘time’ set but not used [-Wunused-but-set-variable]
34586 |   CharPtr     str, time;
      |                    ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil3.c:62:
sqnutil3.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil3.c: In function ‘FillInMissingTraces’:
sqnutil3.c:35189:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
35189 |     system (cmmd);
      |     ^~~~~~~~~~~~~
At top level:
sqnutil3.c:36777:13: warning: ‘TestLatLonFormatting’ defined but not used [-Wunused-function]
36777 | static void TestLatLonFormatting (FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~
sqnutil3.c:34406:22: warning: ‘BetterDateFree’ defined but not used [-Wunused-function]
34406 | static BetterDatePtr BetterDateFree (BetterDatePtr dp)
      |                      ^~~~~~~~~~~~~~
sqnutil3.c:33998:16: warning: ‘GetColon’ defined but not used [-Wunused-function]
33998 | static CharPtr GetColon (CharPtr str)
      |                ^~~~~~~~
sqnutil3.c:17224:24: warning: ‘IntervalPairFree’ defined but not used [-Wunused-function]
17224 | static IntervalPairPtr IntervalPairFree (IntervalPairPtr i)
      |                        ^~~~~~~~~~~~~~~~
sqnutil3.c:10883:16: warning: ‘IsMitochondrionBioseq’ defined but not used [-Wunused-function]
10883 | static Boolean IsMitochondrionBioseq(BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘LinkCDSmRNAbyLabelAndLocationCallback’:
sqnutil3.c:876:23: warning: ‘best_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  876 |             } else if (diff < best_diff) {
      |                       ^
sqnutil3.c: In function ‘tRNASameStrandBioseqCallback’:
sqnutil3.c:16769:8: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16769 |     if (strand == Seq_strand_minus) {
      |        ^
sqnutil3.c: In function ‘CheckForDivConflicts’:
sqnutil3.c:8132:15: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8132 |          else ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQFEAT, sfp);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c:8131:13: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8131 |             ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQDESC, sdp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘FindMismatchedComments’:
sqnutil3.c:26612:47: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
26612 |     sprintf (fmt, sub_fmt, (CharPtr) sdp->data.ptrvalue);
      |                                      ~~~~~~~~~^~~~~~~~~
sqnutil3.c: In function ‘FillInMissingTraces’:
sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
35188 |     sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out);
      |                           ^~                        ~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
35188 |     sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out);
      |                           ^~                        ~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil4.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil4.c: In function ‘ListClauses’:
sqnutil4.c:8566:43: warning: variable ‘twobefore’ set but not used [-Wunused-but-set-variable]
 8566 |   FeatureClausePtr thisclause, onebefore, twobefore, oneafter, twoafter;
      |                                           ^~~~~~~~~
sqnutil4.c: In function ‘SmashOneTallClause’:
sqnutil4.c:9900:20: warning: variable ‘subclause_featlist’ set but not used [-Wunused-but-set-variable]
 9900 |   ValNodePtr       subclause_featlist;
      |                    ^~~~~~~~~~~~~~~~~~
sqnutil4.c: In function ‘GetFeatureClauseForSeg’:
sqnutil4.c:10787:21: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
10787 |   Int4              start, stop;
      |                     ^~~~~
sqnutil4.c: In function ‘RemoveAutodefObjectsForDesc’:
sqnutil4.c:13618:18: warning: unused variable ‘bssp’ [-Wunused-variable]
13618 |     BioseqSetPtr bssp;
      |                  ^~~~
sqnutil4.c:13617:15: warning: unused variable ‘bsp’ [-Wunused-variable]
13617 |     BioseqPtr bsp;
      |               ^~~
sqnutil4.c: In function ‘ConvertProtToImpFunc’:
sqnutil4.c:15072:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
15072 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil4.c: In function ‘ExtraCDSCreationActions’:
sqnutil4.c:15989:28: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
15989 |   SeqEntryPtr        psep, nsep;
      |                            ^~~~
sqnutil4.c: In function ‘TESTDisplayQualCombo’:
sqnutil4.c:17099:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
17099 |   Int4             val;
      |                    ^~~
sqnutil4.c: In function ‘ConvertCDSToMatPeptideForOverlappingCDS’:
sqnutil4.c:18589:15: warning: variable ‘crp’ set but not used [-Wunused-but-set-variable]
18589 |   CdRegionPtr crp;
      |               ^~~
sqnutil4.c: In function ‘AddNewUniqueAnnotations’:
sqnutil4.c:18780:39: warning: variable ‘sap_tmp_next’ set but not used [-Wunused-but-set-variable]
18780 |   SeqAnnotPtr sap, sap_next, sap_tmp, sap_tmp_next, sap_copy, last_sap;
      |                                       ^~~~~~~~~~~~
sqnutil4.c: In function ‘AssignBioseqToLineageGroup’:
sqnutil4.c:19443:27: warning: variable ‘vnp_last’ set but not used [-Wunused-but-set-variable]
19443 |   ValNodePtr   list, vnp, vnp_last = NULL;
      |                           ^~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from sqnutil4.c:58:
sqnutil4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sqnutil4.c:64:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sqnutil4.c:17248:13: warning: ‘TESTDisplayList’ defined but not used [-Wunused-function]
17248 | static void TESTDisplayList (ValNodePtr new_list)
      |             ^~~~~~~~~~~~~~~
sqnutil4.c:17219:19: warning: ‘ExpandOneComboListUsingAllPresentQuals’ defined but not used [-Wunused-function]
17219 | static ValNodePtr ExpandOneComboListUsingAllPresentQuals (QualComboPtr q)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil4.c:16930:16: warning: ‘RemoveFieldFromUniqBioSrcGrpList’ defined but not used [-Wunused-function]
16930 | static Boolean RemoveFieldFromUniqBioSrcGrpList (ValNodePtr list, FieldTypePtr field)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil4.c:10029:19: warning: ‘RemoveAllButLastCDS’ defined but not used [-Wunused-function]
10029 | static ValNodePtr RemoveAllButLastCDS (
      |                   ^~~~~~~~~~~~~~~~~~~
sqnutil4.c:9998:13: warning: ‘SmashTallClauses’ defined but not used [-Wunused-function]
 9998 | static void SmashTallClauses (
      |             ^~~~~~~~~~~~~~~~
sqnutil4.c:9834:13: warning: ‘RemoveFeats’ defined but not used [-Wunused-function]
 9834 | static void RemoveFeats (
      |             ^~~~~~~~~~~
sqnutil4.c:5211:13: warning: ‘CountFeatures’ defined but not used [-Wunused-function]
 5211 | static Int4 CountFeatures (
      |             ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF subutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from subutil.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
subutil.c: In function ‘AddSeqLitToBioseq’:
subutil.c:769:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  769 |     ValNodePtr vnp;
      |                ^~~
subutil.c: In function ‘AddReferenceToSegmentedEntry’:
subutil.c:1163:22: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 1163 |     SeqEntryPtr tmp, prev;
      |                      ^~~~
subutil.c: In function ‘GetDNAConv’:
subutil.c:1624:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1624 |        dnaconv[*ptr] = *ptr;
      |                ^~~~
subutil.c: In function ‘GetProteinConv’:
subutil.c:1646:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1646 |        protconv[*ptr] = *ptr;
      |                 ^~~~
subutil.c: In function ‘AddBasesToByteStore’:
subutil.c:1669:26: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1669 |         residue = dnaconv[ch];
      |                          ^
subutil.c: In function ‘AddAAsToByteStore’:
subutil.c:1700:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1700 |         residue = aaconv[ch];
      |                         ^
subutil.c: In function ‘CitArtBuild’:
subutil.c:2683:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 2683 |     ValNodePtr vnp, tmp;
      |                     ^~~
subutil.c: In function ‘MakeRNAFeature’:
subutil.c:3639:29: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 3639 |             if (AA_for_tRNA != '\0')
      |                             ^~
subutil.c:3639:17: note: did you mean to dereference the pointer?
 3639 |             if (AA_for_tRNA != '\0')
      |                 ^
At top level:
subutil.c:3546:20: warning: ‘TranslateCdRegionNew’ defined but not used [-Wunused-function]
 3546 | static SeqEntryPtr TranslateCdRegionNew (
      |                    ^~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF edutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/edutil.h:188,
                 from edutil.c:365:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
edutil.c: In function ‘SeqLocsToDeltaSeqs’:
edutil.c:795:14: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable]
  795 |     SeqIdPtr sip;
      |              ^~~
edutil.c: In function ‘SeqLocCopyPart’:
edutil.c:2243:13: warning: variable ‘done’ set but not used [-Wunused-but-set-variable]
 2243 |     Boolean done, started, wasa_null, hada_null;
      |             ^~~~
edutil.c: In function ‘IndexedSeqFeatsCopy’:
edutil.c:2400:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable]
 2400 |     ValNodePtr region;
      |                ^~~~~~
edutil.c: In function ‘SeqFeatsCopy’:
edutil.c:2504:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable]
 2504 |     ValNodePtr region;
      |                ^~~~~~
edutil.c: In function ‘SeqLocInsert’:
edutil.c:3686:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 3686 |     Int4 diff, numpnt, i, tpos;
      |          ^~~~
edutil.c: In function ‘SeqEdRecreateDeletedFeats’:
edutil.c:4212:19: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 4212 |   SeqFeatPtr      sfp;
      |                   ^~~
edutil.c: In function ‘SeqEdSeqLocInsert’:
edutil.c:4512:8: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 4512 |   Int4 diff, numpnt, i, tpos;
      |        ^~~~
edutil.c: In function ‘SeqEdSeqLocDelete’:
edutil.c:5069:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 5069 |     Int4 diff;
      |          ^~~~
edutil.c: In function ‘SeqEdInsertAdjustFeat’:
edutil.c:5300:7: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 5300 |       && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c: In function ‘SeqEdDeleteFromBsp’:
edutil.c:6485:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 6485 |           && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c:6548:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 6548 |           && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c:6437:21: warning: variable ‘merge_mode’ set but not used [-Wunused-but-set-variable]
 6437 |   Boolean           merge_mode;
      |                     ^~~~~~~~~~
edutil.c:6428:21: warning: variable ‘feats_altered’ set but not used [-Wunused-but-set-variable]
 6428 |   Boolean           feats_altered = FALSE;
      |                     ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff1.c: In function ‘asn2ff_print’:
asn2ff1.c:289:17: warning: unused variable ‘dsp’ [-Wunused-variable]
  289 |  DescrStructPtr dsp = NULL;
      |                 ^~~
asn2ff1.c: In function ‘Asn2ffJobCreate’:
asn2ff1.c:351:18: warning: unused variable ‘itemID’ [-Wunused-variable]
  351 |  Uint4           itemID = 0;
      |                  ^~~~~~
asn2ff1.c: In function ‘SeqEntryToEntrez’:
asn2ff1.c:498:15: warning: unused variable ‘slp’ [-Wunused-variable]
  498 |  SeqLocPtr    slp = NULL;
      |               ^~~
asn2ff1.c: In function ‘SeqLocToFlat’:
asn2ff1.c:1518:19: warning: unused variable ‘itemID’ [-Wunused-variable]
 1518 |  Uint4            itemID=0;
      |                   ^~~~~~
asn2ff1.c: In function ‘asn2ff_setup’:
asn2ff1.c:1579:12: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
 1579 |  BioseqPtr bsp;
      |            ^~~
asn2ff1.c: In function ‘PrintStatusLine’:
asn2ff1.c:2197:15: warning: unused variable ‘ptr’ [-Wunused-variable]
 2197 |  CharPtr   u, ptr=NULL;
      |               ^~~
asn2ff1.c: In function ‘asn2gb_setup’:
asn2ff1.c:2403:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2403 |   if (ajp->genome_view && gbp->map == FALSE || ajp->contig_view) {
At top level:
asn2ff1.c:2189:13: warning: ‘PrintStatusLine’ defined but not used [-Wunused-function]
 2189 | static void PrintStatusLine(Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |             ^~~~~~~~~~~~~~~
asn2ff1.c:2171:16: warning: ‘find_user_object’ defined but not used [-Wunused-function]
 2171 | static Boolean find_user_object(BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~
asn2ff1.c:816:19: warning: ‘SeqEntryToLinkStrEx’ defined but not used [-Wunused-function]
  816 | static LinkStrPtr SeqEntryToLinkStrEx(Asn2ffJobPtr ajp, SeqEntryPtr sep, LinkStrPtr lsp, Uint1 format)
      |                   ^~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff1.c:45:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff1.c: In function ‘print_taxinfo’:
asn2ff1.c:4356:19: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 4356 |   sprintf(tmp, "%d", gcode);
      |                   ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff1.c: In function ‘asn2embl_setup’:
asn2ff1.c:2754:7: warning: ‘max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2754 |    if (max == index+1) {
      |       ^
asn2ff1.c: In function ‘asn2gp_setup’:
asn2ff1.c:2942:4: warning: ‘feat_num’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2942 |    for (index=0; index < feat_num; index++) {
      |    ^~~
asn2ff1.c: In function ‘SeqEntryToGBFlatNoSeq’:
asn2ff1.c:1292:15: warning: ‘rsult’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1292 |     Boolean   rsult;
      |               ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from asn2ff2.c:216:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff2.c: In function ‘GetStrForBankit’:
asn2ff2.c:518:9: warning: unused variable ‘i’ [-Wunused-variable]
  518 |  Int2   i=0, ptrlen = 0;
      |         ^
asn2ff2.c: In function ‘GetCommentByChoice’:
asn2ff2.c:769:34: warning: unused variable ‘string’ [-Wunused-variable]
  769 |  CharPtr buf = NULL, ptr = NULL, string=NULL, new_string=NULL, str=NULL;
      |                                  ^~~~~~
asn2ff2.c: In function ‘GP_GetSeqDescrComms’:
asn2ff2.c:1163:10: warning: unused variable ‘got_comment’ [-Wunused-variable]
 1163 |  Boolean got_comment=FALSE;
      |          ^~~~~~~~~~~
asn2ff2.c: At top level:
asn2ff2.c:1358:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
 1358 | static ChoicePID(SeqIdPtr sid)
      |        ^~~~~~~~~
asn2ff2.c: In function ‘GetGibbsqCommentLength’:
asn2ff2.c:1600:7: warning: unused variable ‘gibbsq’ [-Wunused-variable]
 1600 |  Int4 gibbsq=0, total;
      |       ^~~~~~
asn2ff2.c: In function ‘GatherDescrByChoice’:
asn2ff2.c:1864:8: warning: variable ‘bspID’ set but not used [-Wunused-but-set-variable]
 1864 |  Uint2 bspID;
      |        ^~~~~
At top level:
asn2ff2.c:1190:16: warning: ‘GetSPBlock’ defined but not used [-Wunused-function]
 1190 | static CharPtr GetSPBlock (Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |                ^~~~~~~~~~
asn2ff2.c:680:16: warning: ‘GetEvidence’ defined but not used [-Wunused-function]
  680 | static CharPtr GetEvidence(Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |                ^~~~~~~~~~~
asn2ff2.c:232:16: warning: ‘has_comment’ defined but not used [-Wunused-variable]
  232 | static Boolean has_comment;
      |                ^~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff2.c:218:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff2.c: In function ‘GetCommentByChoice’:
asn2ff2.c:829:8: warning: ‘is_other’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  829 |     if (is_other == TRUE  && mfp->completeness) {
      |        ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff3.c: In function ‘PutGeneFirst’:
asn2ff3.c:1073:26: warning: unused variable ‘qual_temp’ [-Wunused-variable]
 1073 |  GBQualPtr gbqual, qual, qual_temp=NULL, qual_gene=NULL;
      |                          ^~~~~~~~~
asn2ff3.c:1072:10: warning: unused variable ‘still_looking’ [-Wunused-variable]
 1072 |  Boolean still_looking=TRUE;
      |          ^~~~~~~~~~~~~
asn2ff3.c: In function ‘mRNAEvidenceComment’:
asn2ff3.c:1157:9: warning: unused variable ‘Locus_id’ [-Wunused-variable]
 1157 |  Int4   Locus_id = 0;
      |         ^~~~~~~~
asn2ff3.c: In function ‘Add_gene_id’:
asn2ff3.c:2717:24: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘Nlm_VoidPtr’ {aka ‘void *’} [-Wformat=]
 2717 |  sprintf(val, "GeneID:%s", vnp->data.ptrvalue);
      |                       ~^   ~~~~~~~~~~~~~~~~~~
      |                        |            |
      |                        char *       Nlm_VoidPtr {aka void *}
      |                       %p
asn2ff3.c: In function ‘Add_trid’:
asn2ff3.c:3142:20: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3142 |    sprintf(buf, "%ld", sip->data.intvalue);
      |                  ~~^   ~~~~~~~~~~~~~~~~~~
      |                    |            |
      |                    long int     Nlm_Int8 {aka long long int}
      |                  %lld
asn2ff3.c:3123:9: warning: unused variable ‘gi’ [-Wunused-variable]
 3123 |  BIG_ID gi = -1;
      |         ^~
asn2ff3.c: In function ‘AddPID’:
asn2ff3.c:3185:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3185 |     sprintf(buf, "%ld", sip->data.intvalue);
      |                   ~~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     long int     Nlm_Int8 {aka long long int}
      |                   %lld
At top level:
asn2ff3.c:2702:13: warning: ‘Add_gene_id’ defined but not used [-Wunused-function]
 2702 | static void Add_gene_id (GeneStructPtr gsp, SeqFeatPtr sfp_out)
      |             ^~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff3.c:39:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
asn2ff3.c: In function ‘Add_dbxref’:
../include/ncbimem.h:232:23: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
asn2ff3.c:216:10: note: ‘val’ was declared here
  216 |  CharPtr val;
      |          ^~~
asn2ff3.c: In function ‘GettRNAaa’:
asn2ff3.c:1618:14: warning: ‘seq_code’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1618 |   if ((table=SeqCodeTableFind (seq_code)) != NULL)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
asn2ff3.c: In function ‘mRNAEvidenceComment’:
../include/ncbistr.h:331:19: warning: ‘ne_name’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
asn2ff3.c:1153:32: note: ‘ne_name’ was declared here
 1153 |  CharPtr   method = NULL, ptr, ne_name;
      |                                ^~~~~~~
asn2ff3.c: In function ‘ConvertToNAImpFeat’:
asn2ff3.c:2254:23: warning: ‘%ld’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=]
 2254 |     sprintf(buf_ptr, "%ld", (long) (cdr->frame));
      |                       ^~~
asn2ff3.c:2254:22: note: directive argument in the range [1, 255]
 2254 |     sprintf(buf_ptr, "%ld", (long) (cdr->frame));
      |                      ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff4.c: In function ‘FlatLocPoint’:
asn2ff4.c:437:15: warning: variable ‘order’ set but not used [-Wunused-but-set-variable]
  437 |  static Uint1 order[NUM_SEQID];
      |               ^~~~~
asn2ff4.c: In function ‘do_FlatLoc’:
asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1122 |    if ( ! FlatVirtLoc( bsp, slp))
      |       ^
asn2ff4.c: At top level:
asn2ff4.c:1347:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
 1347 | static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
      |        ^~~~~~~~~~
asn2ff4.c: In function ‘CreateImpFeatFromProt’:
asn2ff4.c:1659:14: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 1659 |  GeneRefPtr  grp;
      |              ^~~
asn2ff4.c: In function ‘MatchNAGeneToFeat’:
asn2ff4.c:2196:17: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable]
 2196 |  NoteStructPtr  nsp; /* UNUSED */
      |                 ^~~
asn2ff4.c: In function ‘MatchAAGeneToFeat’:
asn2ff4.c:2367:18: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable]
 2367 |  NoteStructPtr   nsp; /* UNUSED */
      |                  ^~~
asn2ff4.c: In function ‘SortOrganizeFeat’:
asn2ff4.c:2457:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2457 |  if (ofp == NULL)
      |  ^~
asn2ff4.c:2459:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2459 |   if (ofp->sfpListsize > 0 && ofp->sortListsize < ofp->sfpListsize) {
      |   ^~
asn2ff4.c: In function ‘OrganizeSeqFeat’:
asn2ff4.c:2578:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2578 |  if (ajp->ignore_top)
      |  ^~
asn2ff4.c:2580:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2580 |   gsc.seglevels = 1;
      |   ^~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff4.c:273:
At top level:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff4.c: In function ‘CheckNewSfpLoc’:
asn2ff4.c:1767:7: warning: ‘slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1767 |   if (SeqLocLen(slp) <= BioseqGetLen(bsp)) {
      |       ^~~~~~~~~~~~~~
asn2ff4.c: In function ‘CreateImpFeatFromProt’:
asn2ff4.c:1723:18: warning: ‘%d’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=]
 1723 |    sprintf(buf, "%d", cdr->frame);
      |                  ^~
asn2ff4.c:1723:17: note: directive argument in the range [1, 255]
 1723 |    sprintf(buf, "%d", cdr->frame);
      |                 ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff5.c: In function ‘format_cit_sub’:
asn2ff5.c:1023:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1023 |             format == EMBLPEPT_FMT && afp->choice == 1)
      |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
asn2ff5.c:926:41: warning: variable ‘need_space’ set but not used [-Wunused-but-set-variable]
  926 |   Boolean need_comma = FALSE, /*UNUSED*/need_space = TRUE;
      |                                         ^~~~~~~~~~
asn2ff5.c: In function ‘format_thesis’:
asn2ff5.c:1213:20: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable]
 1213 |  Boolean /*UNUSED*/embl_format = FALSE;
      |                    ^~~~~~~~~~~
asn2ff5.c: In function ‘format_book’:
asn2ff5.c:1296:10: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable]
 1296 |  Boolean embl_format = FALSE;
      |          ^~~~~~~~~~~
asn2ff5.c: In function ‘format_jourarticle’:
asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1680 |    if (ip->pages != NULL)
      |       ^
asn2ff5.c: In function ‘StripParanthesis’:
asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value]
 2124 |    temp++; *ptr_in++;
      |            ^~~~~~~~~
asn2ff5.c: In function ‘PostARefErrMessage’:
asn2ff5.c:3005:20: warning: variable ‘ignore_this’ set but not used [-Wunused-but-set-variable]
 3005 |  Boolean /*UNUSED*/ignore_this, submit=FALSE, error;
      |                    ^~~~~~~~~~~
asn2ff5.c: At top level:
asn2ff5.c:188:26: warning: ‘GetSubmitterName’ declared ‘static’ but never defined [-Wunused-function]
  188 | static CharPtr /*UNUSED*/GetSubmitterName PROTO ((Uint1 format, ValNodePtr pub));
      |                          ^~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff5.c:177:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff5.c: In function ‘CheckPubs’:
asn2ff5.c:2772:5: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2772 |     PostARefErrMessage (ajp, bsp, psp, NULL, status, NULL);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c: In function ‘FlatJournal’:
asn2ff5.c:1121:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 1121 |    sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                   ^~~
asn2ff5.c:1121:16: note: directive argument in the range [1, 2147483647]
 1121 |    sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c:1115:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 1115 |    sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                   ^~~
asn2ff5.c:1115:16: note: directive argument in the range [1, 2147483647]
 1115 |    sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                ^~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c:1140:24: warning: ‘afp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1140 |  if (ap == NULL || afp == NULL) {
      |                        ^
asn2ff5.c:1051:11: note: ‘afp’ was declared here
 1051 |  AffilPtr afp;
      |           ^~~
In file included from ../include/ncbi.h:62,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
../include/ncbistr.h:349:20: warning: ‘temp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  349 | #define StringMove Nlm_StringMove
      |                    ^~~~~~~~~~~~~~
asn2ff5.c:1946:23: note: ‘temp’ was declared here
 1946 |   CharPtr affil=NULL, temp, dup_pages=NULL, retval=NULL;
      |                       ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff6.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff6.c: In function ‘AddGBQual’:
asn2ff6.c:1327:18: warning: variable ‘note’ set but not used [-Wunused-but-set-variable]
 1327 |  GBQualPtr curq, note = NULL;
      |                  ^~~~
asn2ff6.c: In function ‘FlatOrganelle’:
asn2ff6.c:1483:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1483 |      if (! retval )
      |      ^~
asn2ff6.c:1486:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1486 |       break;
      |       ^~~~~
asn2ff6.c: In function ‘BioseqGetGBDivCodeEx’:
asn2ff6.c:1700:23: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 1700 |  Int2 tech, /*UNUSED*/diff, retval = 0;
      |                       ^~~~
asn2ff6.c: In function ‘GR_PrintPubs’:
asn2ff6.c:2297:41: warning: unused variable ‘stop’ [-Wunused-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |                                         ^~~~
asn2ff6.c:2297:32: warning: unused variable ‘start’ [-Wunused-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |                                ^~~~~
asn2ff6.c:2297:13: warning: variable ‘pmid’ set but not used [-Wunused-but-set-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |             ^~~~
asn2ff6.c:2296:10: warning: unused variable ‘descr’ [-Wunused-variable]
 2296 |  CharPtr descr = NULL;
      |          ^~~~~
asn2ff6.c: In function ‘ValidateLocus’:
asn2ff6.c:2786:17: warning: variable ‘base_locus_max’ set but not used [-Wunused-but-set-variable]
 2786 |  Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
      |                 ^~~~~~~~~~~~~~
asn2ff6.c: In function ‘ValidateOtherAccession’:
asn2ff6.c:2886:29: warning: unused variable ‘FiveNum’ [-Wunused-variable]
 2886 |  Boolean FirstLetter=FALSE, FiveNum = FALSE;
      |                             ^~~~~~~
asn2ff6.c:2886:10: warning: unused variable ‘FirstLetter’ [-Wunused-variable]
 2886 |  Boolean FirstLetter=FALSE, FiveNum = FALSE;
      |          ^~~~~~~~~~~
asn2ff6.c: In function ‘AddExtraAccessions’:
asn2ff6.c:3498:20: warning: variable ‘ncbi’ set but not used [-Wunused-but-set-variable]
 3498 |  Boolean /*UNUSED*/ncbi = FALSE;
      |                    ^~~~
At top level:
asn2ff6.c:2883:13: warning: ‘ValidateOtherAccession’ defined but not used [-Wunused-function]
 2883 | static Int2 ValidateOtherAccession(CharPtr new_buf, CharPtr orig_buf)
      |             ^~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from asn2ff6.c:347:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff6.c: In function ‘ValidateLocus’:
asn2ff6.c:2866:33: warning: ‘exp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2866 |    sprintf(buf_ext+num_of_digits-exp, "%ld", (long) num_seg);
      |                                 ^
asn2ff6.c: In function ‘MakeBaseLocusAwp’:
asn2ff6.c:3093:38: warning: ‘num_of_digits’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3093 |  base_locus_max = MAX_LOCUS_NAME_LEN - num_of_digits;
asn2ff6.c: In function ‘GetLocusPartsAwp’:
asn2ff6.c:3449:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3449 |       sprintf(gbp->locus, "%-16s", buf_acc);
      |                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3447:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3447 |       sprintf(gbp->locus, "%-10s", buf_acc);
      |                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3372:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3372 |        sprintf(gbp->locus, "%-16s", buf_acc);
      |                                  ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3370:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3370 |        sprintf(gbp->locus, "%-10s", buf_acc);
      |                                  ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3313:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3313 |      sprintf(gbp->locus, "%-16s", buf_acc);
      |                                ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3311:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3311 |      sprintf(gbp->locus, "%-10s", buf_acc);
      |                                ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3270:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3270 |       sprintf(gbp->locus, "%-16s", buf_acc);
      |                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3268:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3268 |       sprintf(gbp->locus, "%-10s", buf_acc);
      |                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb1.c: In function ‘IsWholeWordSubstr’:
asn2gnb1.c:2202:19: warning: variable ‘right’ set but not used [-Wunused-but-set-variable]
 2202 |     Boolean left, right;
      |                   ^~~~~
asn2gnb1.c: In function ‘s_LocusGetBaseName’:
asn2gnb1.c:2350:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 2350 |     else
      |     ^~~~
asn2gnb1.c:2352:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 2352 |       newLength = segNameLen - deleteChars;
      |       ^~~~~~~~~
asn2gnb1.c: In function ‘DoOneSection’:
asn2gnb1.c:2522:24: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 2522 |   IntAsn2gbSectPtr     iasp;
      |                        ^~~~
asn2gnb1.c:2514:24: warning: variable ‘bkmask’ set but not used [-Wunused-but-set-variable]
 2514 |   BlockMask            bkmask;
      |                        ^~~~~~
asn2gnb1.c: In function ‘Count2Seg’:
asn2gnb1.c:3438:18: warning: variable ‘to’ set but not used [-Wunused-but-set-variable]
 3438 |   Int4           to;
      |                  ^~
asn2gnb1.c:3436:18: warning: variable ‘parent’ set but not used [-Wunused-but-set-variable]
 3436 |   BioseqPtr      parent;
      |                  ^~~~~~
asn2gnb1.c: At top level:
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
 3714 | static ModeFlags flagTable [] = {
      |                                 ^
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c: In function ‘SeqIdWriteForTable’:
asn2gnb1.c:5808:13: warning: variable ‘pdb’ set but not used [-Wunused-but-set-variable]
 5808 |             pdb = NULL, general = NULL, gi = NULL;
      |             ^~~
asn2gnb1.c:5807:40: warning: variable ‘patent’ set but not used [-Wunused-but-set-variable]
 5807 |   SeqIdPtr  accn = NULL, local = NULL, patent = NULL,
      |                                        ^~~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb1.c:43:
asn2gnb1.c: In function ‘DoImmediateFormat’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb1.c:6951:19: note: in expansion of macro ‘MAX’
 6951 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb1.c:6930:20: warning: variable ‘is_www’ set but not used [-Wunused-but-set-variable]
 6930 |   Boolean          is_www;
      |                    ^~~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb1.c:43:
asn2gnb1.c: In function ‘asn2gnbk_format’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb1.c:7072:19: note: in expansion of macro ‘MAX’
 7072 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb1.c: In function ‘asn2gnbk_cleanup’:
asn2gnb1.c:7118:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 7118 |   IntAsn2gbSectPtr  iasp;
      |                     ^~~~
asn2gnb1.c: In function ‘SeqEntryToGnbk’:
asn2gnb1.c:7304:22: warning: variable ‘userdata’ set but not used [-Wunused-but-set-variable]
 7304 |   Pointer            userdata = NULL;
      |                      ^~~~~~~~
asn2gnb1.c:7299:22: warning: variable ‘gbseq’ set but not used [-Wunused-but-set-variable]
 7299 |   GBSeqPtr           gbseq = NULL;
      |                      ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb1.c:58:
asn2gnb1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb1.c: In function ‘PrintFtableIntervals’:
asn2gnb1.c:5463:28: warning: ‘
   ’ directive writing 1 byte into a region of size between 0 and 62 [-Wformat-overflow=]
 5463 |   sprintf (str, "%s\t%s\t%s\n", str1, str2, label);
      |                            ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 66) into a destination of size 64
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb1.c:5487:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5487 |       sprintf (str, "%s\t%s\n", str1, str2);
      |                              ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 65 bytes into a destination of size 64
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb2.c: In function ‘s_LocusAddSuffix’:
asn2gnb2.c:217:11: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable]
  217 |   Char    ch;
      |           ^~
asn2gnb2.c: In function ‘AddLocusBlock’:
asn2gnb2.c:1361:66: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1361 |       } else if ((moltype >= 2 && moltype <= 8) || moltype >= 10 && moltype <= 11) {
      |                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
asn2gnb2.c: In function ‘IsSuccessor’:
asn2gnb2.c:1742:15: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |               ^~
asn2gnb2.c:1742:10: note: did you mean to dereference the pointer?
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |          ^
asn2gnb2.c:1742:34: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |                                  ^~
asn2gnb2.c:1742:28: note: did you mean to dereference the pointer?
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |                            ^
asn2gnb2.c: In function ‘IsProjectAccn’:
asn2gnb2.c:1767:38: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1767 |     for (ptr = acc, letters = 0; ptr != '\0'  &&  IS_ALPHA(*ptr); ++ptr, ++letters) continue;
      |                                      ^~
asn2gnb2.c:1767:34: note: did you mean to dereference the pointer?
 1767 |     for (ptr = acc, letters = 0; ptr != '\0'  &&  IS_ALPHA(*ptr); ++ptr, ++letters) continue;
      |                                  ^
asn2gnb2.c: In function ‘AddDblinkBlock’:
asn2gnb2.c:2892:22: warning: variable ‘parentID’ set but not used [-Wunused-but-set-variable]
 2892 |   Int4               parentID;
      |                      ^~~~~~~~
asn2gnb2.c: In function ‘AddSPBlock’:
asn2gnb2.c:3409:14: warning: implicit declaration of function ‘PrintDate’ [-Wimplicit-function-declaration]
 3409 |     string = PrintDate (spb->created);
      |              ^~~~~~~~~
asn2gnb2.c:3409:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3409 |     string = PrintDate (spb->created);
      |            ^
asn2gnb2.c:3417:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3417 |     string = PrintDate (spb->sequpd);
      |            ^
asn2gnb2.c:3424:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3424 |     string = PrintDate (spb->annotupd);
      |            ^
asn2gnb2.c: In function ‘AddSourceOrganismBlock’:
asn2gnb2.c:5056:22: warning: variable ‘common’ set but not used [-Wunused-but-set-variable]
 5056 |   CharPtr            common;
      |                      ^~~~~~
asn2gnb2.c: In function ‘GetRefsOnBioseq’:
asn2gnb2.c:5893:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 5893 |   Uint1              strand;
      |                      ^~~~~~
asn2gnb2.c:5890:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 5890 |   Boolean            split;
      |                      ^~~~~
asn2gnb2.c:5884:22: warning: variable ‘right’ set but not used [-Wunused-but-set-variable]
 5884 |   Int4               right;
      |                      ^~~~~
asn2gnb2.c:5878:22: warning: variable ‘left’ set but not used [-Wunused-but-set-variable]
 5878 |   Int4               left;
      |                      ^~~~
asn2gnb2.c: In function ‘AddLocusBlock’:
asn2gnb2.c:239:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
  239 |   sprintf(segCountStr,"%d",awp->numsegs);
      |                        ^~
asn2gnb2.c:239:23: note: directive argument in the range [2, 2147483647]
  239 |   sprintf(segCountStr,"%d",awp->numsegs);
      |                       ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 6
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:244:25: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 4 [-Wformat-overflow=]
  244 |     sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg);
      |                         ^~~~
asn2gnb2.c:244:23: note: directive argument in the range [0, 65535]
  244 |     sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg);
      |                       ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 32770 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:246:24: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 5 [-Wformat-overflow=]
  246 |     sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg);
      |                        ^~~~
asn2gnb2.c:246:23: note: directive argument in the range [0, 65535]
  246 |     sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg);
      |                       ^~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1514:48: warning: ‘" title="Jump to the comment...’ directive writing 69 bytes into a region of size between 66 and 106 [-Wformat-overflow=]
 1514 |       sprintf (sect, "<li><a href=\"#comment_%s\" title=\"Jump to the comment section of this record\">Comment</a></li>",
      |                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 92 and 132 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1518:46: warning: ‘" title="Jump to the feature...’ directive writing 68 bytes into a region of size between 66 and 106 [-Wformat-overflow=]
 1518 |     sprintf (sect, "<li><a href=\"#feature_%s\" title=\"Jump to the feature table of this record\">Features</a></li>",
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 91 and 131 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1527:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1527 |       sprintf (sect, "<li><a href=\"#genome_%s\" title=\"Jump to the genome section of this record\">Genome</a></li>",
      |                                                                                                                     ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1532:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1532 |       sprintf (sect, "<li><a href=\"#contig_%s\" title=\"Jump to the contig section of this record\">Contig</a></li>",
      |                                                                                                                     ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1579:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=]
 1579 |       sprintf (sect, "<li class=\"next\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Next</a></li>", (long) nextGi, seqid);
      |                                                                                 ^~                                  ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 67 and 203 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1587:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=]
 1587 |       sprintf (sect, "<li class=\"next\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Next</a></li>", (long) awp->nextGi, seqid);
      |                                                                                 ^~                                       ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 67 and 204 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1600:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=]
 1600 |       sprintf (sect, "<li class=\"prev\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Previous</a></li>", (long) prevGi, seqid);
      |                                                                                 ^~                                      ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 71 and 207 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1608:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=]
 1608 |       sprintf (sect, "<li class=\"prev\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Previous</a></li>", (long) awp->prevGi, seqid);
      |                                                                                 ^~                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 71 and 208 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb3.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb3.c: In function ‘GetStatusForRefTrack’:
asn2gnb3.c:796:22: warning: variable ‘urf’ set but not used [-Wunused-but-set-variable]
  796 |   UserFieldPtr  ufp, urf = NULL;
      |                      ^~~
asn2gnb3.c: In function ‘AddCommentBlock’:
asn2gnb3.c:2656:22: warning: variable ‘is_wgs’ set but not used [-Wunused-but-set-variable]
 2656 |   Boolean            is_wgs = FALSE;
      |                      ^~~~~~
asn2gnb3.c: In function ‘GetSourcesOnBioseq’:
asn2gnb3.c:5472:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 5472 |   Uint1              strand;
      |                      ^~~~~~
asn2gnb3.c:5470:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5470 |   Int4               start;
      |                      ^~~~~
asn2gnb3.c:5468:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 5468 |   Boolean            split;
      |                      ^~~~~
asn2gnb3.c: In function ‘AddSourceFeatBlock’:
asn2gnb3.c:5989:22: warning: unused variable ‘sip’ [-Wunused-variable]
 5989 |   SeqIdPtr           sip;
      |                      ^~~
asn2gnb3.c: In function ‘GetFeatsOnCdsProduct’:
asn2gnb3.c:6446:22: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable]
 6446 |   Boolean            isRefSeq;
      |                      ^~~~~~~~
asn2gnb3.c: In function ‘GetRemoteFeatsOnCdsProduct’:
asn2gnb3.c:6595:20: warning: variable ‘lastsfp’ set but not used [-Wunused-but-set-variable]
 6595 |   SeqFeatPtr       lastsfp;
      |                    ^~~~~~~
asn2gnb3.c:6594:20: warning: variable ‘lastsap’ set but not used [-Wunused-but-set-variable]
 6594 |   SeqAnnotPtr      lastsap;
      |                    ^~~~~~~
asn2gnb3.c:6593:20: warning: variable ‘lastright’ set but not used [-Wunused-but-set-variable]
 6593 |   Int4             lastright;
      |                    ^~~~~~~~~
asn2gnb3.c:6592:20: warning: variable ‘lastleft’ set but not used [-Wunused-but-set-variable]
 6592 |   Int4             lastleft;
      |                    ^~~~~~~~
asn2gnb3.c:6591:20: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable]
 6591 |   Boolean          isRefSeq;
      |                    ^~~~~~~~
asn2gnb3.c: In function ‘GetFeatsOnBioseq’:
asn2gnb3.c:6895:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 6895 |   Int4               start;
      |                      ^~~~~
asn2gnb3.c:6866:22: warning: variable ‘icp’ set but not used [-Wunused-but-set-variable]
 6866 |   IntCdsBlockPtr     icp;
      |                      ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb3.c:57:
asn2gnb3.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb3.c:1582:16: warning: ‘nsWGSGapsString’ defined but not used [-Wunused-variable]
 1582 | static CharPtr nsWGSGapsString = "The strings of n's in this record represent gaps between contigs or uncallable bases.";
      |                ^~~~~~~~~~~~~~~
asn2gnb3.c:1581:16: warning: ‘nsAreGapsString’ defined but not used [-Wunused-variable]
 1581 | static CharPtr nsAreGapsString = "The strings of n's in this record represent gaps between contigs, and the length of each string corresponds to the length of the gap.";
      |                ^~~~~~~~~~~~~~~
asn2gnb3.c: In function ‘AddCommentBlock’:
asn2gnb3.c:3429:29: warning: ‘nm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3429 |                         if (IS_protdb_accession (nm)) {
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb4.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockQuals’:
asn2gnb4.c:3723:50: warning: "/*" within comment [-Wcomment]
 3723 |                 StringChr (str + 1, '(') == NULL /* && StringChr (str, ',') != NULL */) {
      |                                                   
asn2gnb4.c:3101:24: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 3101 |   Boolean              split;
      |                        ^~~~~
asn2gnb4.c:3042:24: warning: variable ‘at_end’ set but not used [-Wunused-but-set-variable]
 3042 |   Boolean              at_end = FALSE;
      |                        ^~~~~~
asn2gnb4.c: In function ‘FF_asn2gb_www_featkey_Ex’:
asn2gnb4.c:5325:16: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable]
 5325 |   CharPtr      prefix = "?";
      |                ^~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockEx’:
asn2gnb4.c:6572:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 6572 |   Boolean            split;
      |                      ^~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb4.c:42:
asn2gnb4.c: In function ‘DoImmediateRemoteFeatureFormat’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb4.c:8796:19: note: in expansion of macro ‘MAX’
 8796 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb4.c: In function ‘FormatFeatureQuals’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb4.c:8869:19: note: in expansion of macro ‘MAX’
 8869 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb4.c:57:
asn2gnb4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockEx’:
asn2gnb4.c:7695:26: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7695 |               oldscope = SeqEntrySetScope (sep);
      |                          ^~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb5.c: In function ‘FormatCitBookArt’:
asn2gnb5.c:2108:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2108 |   ValNodePtr   vnp;
      |                ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb5.c:57:
asn2gnb5.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb5.c: In function ‘FormatReferenceBlock’:
asn2gnb5.c:2553:22: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 2553 |       sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                      ^~~
asn2gnb5.c:2553:19: note: directive argument in the range [1, 2147483647]
 2553 |       sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                   ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb5.c:2550:22: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 2550 |       sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                      ^~~
asn2gnb5.c:2550:19: note: directive argument in the range [1, 2147483647]
 2550 |       sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                   ^~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb6.c: In function ‘FlatLocElement’:
asn2gnb6.c:2546:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2546 |         if (sintp->to > 0 &&
      |             ~~~~~~~~~~~~~~^~
 2547 |             (sintp->to != sintp->from ||
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2548 |              sintp->if_from != NULL ||
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~
 2549 |              sintp->if_to != NULL) ||
      |              ~~~~~~~~~~~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatContigBlock’:
asn2gnb6.c:5701:20: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable]
 5701 |   DeltaSeqPtr      dspnext;
      |                    ^~~~~~~
asn2gnb6.c: In function ‘ProcessGapSpecialFormat’:
asn2gnb6.c:6041:13: warning: unused variable ‘sip’ [-Wunused-variable]
 6041 |   SeqIdPtr  sip;
      |             ^~~
asn2gnb6.c: In function ‘FormatSequenceBlock’:
asn2gnb6.c:6168:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 6168 |   IntAsn2gbSectPtr  iasp;
      |                     ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb6.c:57:
asn2gnb6.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb6.c:76:16: warning: ‘link_lat_lon’ defined but not used [-Wunused-variable]
   76 | static CharPtr link_lat_lon = "https://www.ncbi.nlm.nih.gov/projects/Sequin/latlonview.html?";
      |                ^~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatSourceFeatBlock’:
asn2gnb6.c:4322:22: warning: ‘+’ directive writing 1 byte into a region of size between 0 and 128 [-Wformat-overflow=]
 4322 |   sprintf (tmp, "%s%s+%s%s", ns, tokens [0], ew, tokens [2]);
      |                      ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 131) into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ftusrstr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ftusrstr.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfeat.c
gbfeat.c: In function ‘CkLabelType’:
gbfeat.c:1465:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1465 |   for (str = bptr; *str != '\0' && IS_ALPHA(*str) || IS_DIGIT(*str)
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbftglob.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbparint.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/parsegb.h:57,
                 from gbparint.c:102:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gbparint.c: In function ‘Nlm_gbparselex’:
gbparint.c:2134:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2134 |                     if (*current_col != '\0')
      |                        ^
gbparint.c: In function ‘Nlm_gbparselex_ver’:
gbparint.c:2520:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2520 |                     if (*current_col != '\0')
      |                        ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpars.c
utilpars.c:112:39: warning: missing braces around initializer [-Wmissing-braces]
  112 |  ParFlat_AA_array[ParFlat_TOTAL_AA] = {
      |                                       ^
  113 |        "Ala", 'A',
      |        {         }
  114 |         "Asx", 'B',
      |         {         }
  115 |         "Cys", 'C',
      |         {         }
  116 |         "Asp", 'D',
      |         {         }
  117 |         "Glu", 'E',
      |         {         }
  118 |         "Phe", 'F',
      |         {         }
  119 |         "Gly", 'G',
      |         {         }
  120 |         "His", 'H',
      |         {         }
  121 |         "Ile", 'I',
      |         {         }
  122 |         "Xle", 'J',  /* was - notice no 'J', breaks naive meaning of index -Karl */
      |         {         }
  123 |         "Lys", 'K',
      |         {         }
  124 |         "Leu", 'L',
      |         {         }
  125 |         "Met", 'M',
      |         {         }
  126 |         "Asn", 'N',
      |         {         }
  127 |         "Pyl", 'O',  /* was - no 'O' */
      |         {         }
  128 |         "Pro", 'P',
      |         {         }
  129 |         "Gln", 'Q',
      |         {         }
  130 |         "Arg", 'R',
      |         {         }
  131 |         "Ser", 'S',
      |         {         }
  132 |         "Thr", 'T',
      |         {         }
  133 |         "Val", 'V',
      |         {         }
  134 |         "Trp", 'W',
      |         {         }
  135 |         "Sec", 'U', /* was - not in iupacaa */
      |         {         }
  136 |         "Xxx", 'X',
      |         {         }
  137 |         "Tyr", 'Y',
      |         {         }
  138 |         "Glx", 'Z',
      |         {         }
  139 |         "TERM", '*', /* not in iupacaa */ /*changed by Tatiana 06.07.95?`*/
      |         {          }
  140 |         "OTHER", 'X'};
      |         {           }
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpub.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from utilpub.c:13:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
utilpub.c: In function ‘FindCit’:
utilpub.c:998:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable]
  998 |  ImpFeatPtr  /*UNUSED*/ifp;
      |                        ^~~
utilpub.c: In function ‘ChangeCitQual’:
utilpub.c:1053:53: warning: variable ‘pub’ set but not used [-Wunused-but-set-variable]
 1053 |  ValNodePtr  vnp, pubset = NULL, pub_min, /*UNUSED*/pub;
      |                                                     ^~~
utilpub.c:1052:34: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable]
 1052 |  ValNodePtr PNTR vnpp, /*UNUSED*/descr;
      |                                  ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ffprint.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from ffprint.c:127:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ffprint.c: In function ‘FFBSPrint’:
ffprint.c:347:19: warning: unused variable ‘byte_sp’ [-Wunused-variable]
  347 |     ByteStorePtr  byte_sp = NULL;
      |                   ^~~~~~~
At top level:
ffprint.c:420:16: warning: ‘ff_print_insert’ defined but not used [-Wunused-function]
  420 | static CharPtr ff_print_insert(CharPtr str, CharPtr ins)
      |                ^~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from ffprint.c:127:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wprint.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
wprint.c: In function ‘LocPrintGenome’:
wprint.c:1696:14: warning: unused variable ‘sep’ [-Wunused-variable]
 1696 |  SeqEntryPtr sep = NULL;
      |              ^~~
wprint.c:1695:25: warning: unused variable ‘b’ [-Wunused-variable]
 1695 |  BioseqPtr  bsp = NULL, b = NULL;
      |                         ^
wprint.c:1695:13: warning: unused variable ‘bsp’ [-Wunused-variable]
 1695 |  BioseqPtr  bsp = NULL, b = NULL;
      |             ^~~
wprint.c:1692:34: warning: unused variable ‘temp’ [-Wunused-variable]
 1692 |  static Char  buf[14], val[166], temp[166];
      |                                  ^~~~
At top level:
wprint.c:1692:34: warning: ‘temp’ defined but not used [-Wunused-variable]
wprint.c:79:13: warning: ‘link_gdb_map’ defined but not used [-Wunused-variable]
   79 | static Char link_gdb_map[MAX_WWWBUF];
      |             ^~~~~~~~~~~~
wprint.c:77:13: warning: ‘link_pir’ defined but not used [-Wunused-variable]
   77 | static Char link_pir[MAX_WWWBUF];
      |             ^~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from wprint.c:51:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
wprint.c: In function ‘PrintDate’:
wprint.c:188:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  188 |    sprintf(day, "%d", (int) (date -> data[3] ));
      |                    ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
wprint.c: In function ‘www_db_xref’:
wprint.c:969:20: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 4 and 9 [-Wformat-overflow=]
  969 |     sprintf(id, "%d%d", id1, id2);
      |                    ^~
wprint.c:969:17: note: directive argument in the range [-32768, 32767]
  969 |     sprintf(id, "%d%d", id1, id2);
      |                 ^~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 13 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
wprint.c: In function ‘www_xref’:
../include/ncbistr.h:331:19: warning: ‘prefix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1358:19: note: ‘prefix’ was declared here
 1358 |  CharPtr s, link, prefix, ss;
      |                   ^~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
../include/ncbistr.h:331:19: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1358:13: note: ‘link’ was declared here
 1358 |  CharPtr s, link, prefix, ss;
      |             ^~~~
wprint.c: In function ‘PrintSPBlock’:
wprint.c:1570:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1570 |      AddLink(s);
      |      ^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF satutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/satutil.h:12,
                 from satutil.c:87:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
satutil.c: In function ‘CopyFeatureFromAlign’:
satutil.c:1011:10: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable]
 1011 |  Boolean check_gap;
      |          ^~~~~~~~~
At top level:
satutil.c:168:16: warning: ‘bk_map_one_location’ defined but not used [-Wunused-function]
  168 | static Boolean bk_map_one_location(SeqLocPtr source_loc, SeqAlignPtr align, SeqIdPtr target_sip, Boolean check_gap, Int4Ptr r_start, Int4Ptr r_stop, SeqLocPtr PNTR head_slp)
      |                ^~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from seqmgr.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqmgr.c: In function ‘SeqEntrySetScope’:
seqmgr.c:311:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  311 |     Boolean found;
      |             ^~~~~
seqmgr.c: In function ‘ClearBioseqFindCache’:
seqmgr.c:897:14: warning: variable ‘smp’ set but not used [-Wunused-but-set-variable]
  897 |   SeqMgrPtr  smp;
      |              ^~~
seqmgr.c: In function ‘GetUniGeneIDForSeqId’:
seqmgr.c:3676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3676 |     if(StringCmp(db_tag->db, "BSNR") == 0)
      |     ^~
seqmgr.c:3678:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3678 |         if(StringCmp(db_tag->db, "HUMGEN") == 0)
      |         ^~
seqmgr.c: In function ‘SeqMgrGetExtraDataForOmdp’:
seqmgr.c:3736:14: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable]
 3736 |   ObjMgrPtr  omp;
      |              ^~~
seqmgr.c: In function ‘CheckForTransSplice’:
seqmgr.c:5657:14: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 5657 |   SeqLocPtr  prev, tmp;
      |              ^~~~
seqmgr.c: In function ‘SeqEntryAsnOut’:
seqmgr.c:11799:41: warning: variable ‘aopp_desc’ set but not used [-Wunused-but-set-variable]
11799 |    AsnOptionPtr       aopp_feat = NULL, aopp_desc = NULL;
      |                                         ^~~~~~~~~
seqmgr.c:11799:23: warning: variable ‘aopp_feat’ set but not used [-Wunused-but-set-variable]
11799 |    AsnOptionPtr       aopp_feat = NULL, aopp_desc = NULL;
      |                       ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqmgr.c:63:
seqmgr.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from objmgr.c:51:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmgr.c: In function ‘ObjMgrReapOne’:
objmgr.c:2727:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2727 |     if (omp->reaping)   /* protect against recursion caused by ObjMgrSendMsg */
      |     ^~
objmgr.c:2730:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2730 |         lowest = UINT4_MAX;
      |         ^~~~~~
objmgr.c: In function ‘ObjMgrDeSelectStructFunc’:
objmgr.c:3767:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3767 |     if (next != NULL)
      |     ^~
objmgr.c:3770:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3770 |         ObjMgrSendDeSelMsg (omp, ssp->entityID, ssp->itemID, ssp->itemtype, ssp->regiontype, ssp->region);
      |         ^~~~~~~~~~~~~~~~~~
objmgr.c: In function ‘ObjMgrSelectFunc2’:
objmgr.c:4031:22: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
 4031 |         Boolean      retval = FALSE;
      |                      ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gather.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from gather.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gather.c: In function ‘AttachDataProc’:
gather.c:4827:30: warning: variable ‘into_seqentry’ set but not used [-Wunused-but-set-variable]
 4827 |     Boolean no_good = FALSE, into_seqentry = FALSE;
      |                              ^~~~~~~~~~~~~
gather.c: In function ‘GatherSeqFeat’:
gather.c:1570:44: warning: ‘newid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1570 |                                     tslp = SeqLocReMap(newid, slp, cbp->loc, offset, rev);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gather.c:1530:86: warning: ‘max_interval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1530 |                                 lrdp = (GatherRangePtr)MemNew((size_t)((max_interval + 20) * sizeof(GatherRange)));
      |                                                                                      ^
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from gather.c:44:
../include/ncbimem.h:232:23: warning: ‘lrdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
gather.c:1404:38: note: ‘lrdp’ was declared here
 1404 |     GatherRangePtr rdp = NULL, trdp, lrdp;
      |                                      ^~~~
gather.c: In function ‘gather_align_data’:
gather.c:2219:15: warning: ‘master_loc’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2219 |     SeqLocPtr master_loc, m_loc;
      |               ^~~~~~~~~~
gather.c:2218:10: warning: ‘mag_val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2218 |     Int4 mag_val;    /*the magnification value */
      |          ^~~~~~~
gather.c: In function ‘GatherBioseqFunc’:
gather.c:3307:53: warning: ‘tlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3307 |                                 rdp->right = offset + tlen - 1;
      |                                              ~~~~~~~^~~~~~
gather.c:3280:39: warning: ‘trunc_r’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3280 |                                    if (trunc_r)
      |                                       ^
gather.c:3285:40: warning: ‘trunc_l’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3285 |                                     if (trunc_l)
      |                                        ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accmmdbs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accmmdbs.c:120:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acccn3ds.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from acccn3ds.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lsqfetch.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/lsqfetch.h:110,
                 from lsqfetch.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
lsqfetch.c: In function ‘ChangeLocalToGenbank’:
lsqfetch.c:1403:21: warning: ‘%s’ directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=]
 1403 |   sprintf (tmp, "gb|%s", id);
      |                     ^~   ~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/lsqfetch.h:110,
                 from lsqfetch.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 44 bytes into a destination of size 41
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF findrepl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from findrepl.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF codon.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/codon.h:61,
                 from codon.c:2:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
codon.c: In function ‘make_cds_paragraph’:
codon.c:262:7: warning: variable ‘space_len’ set but not used [-Wunused-but-set-variable]
  262 |  Int4 space_len, i;
      |       ^~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzcoll.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from jzcoll.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
jzcoll.c: In function ‘load_default_matrix’:
jzcoll.c:99:13: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   99 |    ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
      |       ~~~~~~^~~
jzcoll.c:99:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   99 |    ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
      |                  ~~~~~~^~~
jzcoll.c:101:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  101 |   ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
      |      ~~~~~~^~~
jzcoll.c:101:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  101 |   ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
      |                                ~~~~~~^~~
jzcoll.c: In function ‘GetUseThisGi’:
jzcoll.c:143:10: warning: unused variable ‘retval’ [-Wunused-variable]
  143 |  Boolean retval=FALSE;
      |          ^~~~~~
jzcoll.c: In function ‘buffer_for_feature’:
jzcoll.c:514:7: warning: unused variable ‘i’ [-Wunused-variable]
  514 |  Int2 i=0;
      |       ^
jzcoll.c: In function ‘ProcessTextInsertion’:
jzcoll.c:878:7: warning: variable ‘last_ins’ set but not used [-Wunused-but-set-variable]
  878 |  Int4 last_ins;
      |       ^~~~~~~~
jzcoll.c: In function ‘satcollfunc’:
jzcoll.c:1723:12: warning: variable ‘head’ set but not used [-Wunused-but-set-variable]
 1723 |  SeqLocPtr head;
      |            ^~~~
jzcoll.c:1721:8: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 1721 |  Uint1 strand;
      |        ^~~~~~
jzcoll.c:1720:7: warning: variable ‘current_pos’ set but not used [-Wunused-but-set-variable]
 1720 |  Int4 current_pos;
      |       ^~~~~~~~~~~
jzcoll.c:1714:12: warning: unused variable ‘slp’ [-Wunused-variable]
 1714 |  SeqLocPtr slp = NULL;
      |            ^~~
jzcoll.c: In function ‘coll_align_data’:
jzcoll.c:2631:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 2631 |     sprintf(buf, "%d", gilist->data.intvalue);
      |                   ~^   ~~~~~~~~~~~~~~~~~~~~~
      |                    |               |
      |                    int             Nlm_Int8 {aka long long int}
      |                   %lld
jzcoll.c: In function ‘collect_anpnode_with_option’:
jzcoll.c:3053:13: warning: unused variable ‘prev’ [-Wunused-variable]
 3053 |  ValNodePtr prev = NULL;
      |             ^~~~
jzcoll.c: In function ‘ck_seqfeat_extra’:
jzcoll.c:3414:10: warning: unused variable ‘has_gb’ [-Wunused-variable]
 3414 |  Boolean has_gb = FALSE, has_med = FALSE;
      |          ^~~~~~
jzcoll.c: In function ‘collseqfunc’:
jzcoll.c:3768:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3768 |      if(omtp->labelfunc !=NULL)
      |      ^~
jzcoll.c:3770:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3770 |       fnp->landmark = check_feature_for_landmark(chp->thislabel, chp->gdata, sfp, gcp, chp->priority);
      |       ^~~
jzcoll.c: In function ‘load_open_close_sts_mark’:
jzcoll.c:4010:10: warning: variable ‘collected’ set but not used [-Wunused-but-set-variable]
 4010 |  Boolean collected = FALSE;
      |          ^~~~~~~~~
jzcoll.c: In function ‘FeatNodeCompProc’:
jzcoll.c:4225:20: warning: variable ‘gr2’ set but not used [-Wunused-but-set-variable]
 4225 |   GatherRange gr1, gr2;
      |                    ^~~
jzcoll.c:4225:15: warning: variable ‘gr1’ set but not used [-Wunused-but-set-variable]
 4225 |   GatherRange gr1, gr2;
      |               ^~~
At top level:
jzcoll.c:2316:16: warning: ‘stop_collecting_alignment’ defined but not used [-Wunused-function]
 2316 | static Boolean stop_collecting_alignment(ValNodePtr anp_list, Int4 max_num)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~
jzcoll.c:1654:16: warning: ‘collect_sequence_label’ defined but not used [-Wunused-function]
 1654 | static Boolean collect_sequence_label(Uint1 format)
      |                ^~~~~~~~~~~~~~~~~~~~~~
jzcoll.c: In function ‘load_text.isra’:
jzcoll.c:421:41: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  421 |                             stdaa_res = SeqMapTableConvert(smtp, m_res);
      |                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzmisc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/jzmisc.h:86,
                 from jzmisc.c:23:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF maputil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from maputil.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
maputil.c: In function ‘load_gene_list’:
maputil.c:690:8: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  690 |  Uint1 val;
      |        ^~~
maputil.c: In function ‘gmarkfunc’:
maputil.c:985:13: warning: variable ‘syn’ set but not used [-Wunused-but-set-variable]
  985 |  ValNodePtr syn = NULL;
      |             ^~~
maputil.c: In function ‘get_location_for_query’:
cc1: warning: function may return address of local variable [-Wreturn-local-addr]
maputil.c:1190:9: note: declared here
 1190 |  SeqLoc sl;
      |         ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mconsist.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/mconsist.h:4,
                 from mconsist.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macroapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from macroapi.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
macroapi.c: In function ‘AdvancedStringCompare’:
macroapi.c:4463:23: warning: variable ‘init_target_match_len’ set but not used [-Wunused-but-set-variable]
 4463 |   Int4    len1, len2, init_target_match_len = 0, target_match_len = 0;
      |                       ^~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘RemoveGBQualMatch’:
macroapi.c:6981:27: warning: variable ‘does_match’ set but not used [-Wunused-but-set-variable]
 6981 |   Boolean   rval = FALSE, does_match, do_remove;
      |                           ^~~~~~~~~~
macroapi.c: In function ‘ParseCodonsRecognizedFromCommaDelimitedList’:
macroapi.c:7726:41: warning: pointer targets in passing argument 1 of ‘ExpandWobbleCodon’ differ in signedness [-Wpointer-sign]
 7726 |         wobble_list = ExpandWobbleCodon(codon);
      |                                         ^~~~~
      |                                         |
      |                                         Nlm_Uint1 * {aka unsigned char *}
macroapi.c:7636:46: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’}
 7636 | static ValNodePtr ExpandWobbleCodon (CharPtr codon)
macroapi.c: In function ‘GetQualFromFeatureAnyType’:
macroapi.c:8537:8: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 8536 |   if (str == NULL
      |       ~~~~~~~~~~~
 8537 |        && (field->choice == FeatQualChoice_legal_qual && field->data.intvalue == Feat_qual_legal_pseudo)
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:8681:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 8681 |       sprintf (buf, "%d", vnp->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~
      |                       |            |
      |                       int          Nlm_Int8 {aka long long int}
      |                      %lld
macroapi.c: In function ‘SetNameInPrimerList’:
macroapi.c:10682:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable]
10682 |   PCRPrimerPtr  pp, prev_pp = NULL;
      |                     ^~~~~~~
macroapi.c: In function ‘SetSeqInPrimerList’:
macroapi.c:10703:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable]
10703 |   PCRPrimerPtr  pp, prev_pp = NULL;
      |                     ^~~~~~~
macroapi.c: In function ‘GetGenomeProjectIdFromBioseq’:
macroapi.c:12881:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
12881 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long long int}
      |                          %lld
macroapi.c: In function ‘RemoveGenomeProjectIdFromBioseq’:
macroapi.c:12916:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
12916 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long long int}
      |                          %lld
macroapi.c: In function ‘SetGenomeProjectIdOnBioseq’:
macroapi.c:12957:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
12957 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long long int}
      |                          %lld
macroapi.c: In function ‘GetPubFieldFromPub’:
macroapi.c:15043:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
15043 |         sprintf (str, "%d", the_pub->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~~~~~~~
      |                         |                |
      |                         int              Nlm_Int8 {aka long long int}
      |                        %lld
macroapi.c: In function ‘GetCitListsForSeqEntry’:
macroapi.c:15825:19: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
15825 |   Uint2           entityID;
      |                   ^~~~~~~~
macroapi.c:15823:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable]
15823 |   Boolean         okay;
      |                   ^~~~
macroapi.c: In function ‘GetPubclassQualFromPub’:
macroapi.c:18324:11: warning: unused variable ‘str’ [-Wunused-variable]
18324 |   CharPtr str = NULL;
      |           ^~~
macroapi.c: In function ‘GetPubMLStatus’:
macroapi.c:18681:14: warning: variable ‘csp’ set but not used [-Wunused-but-set-variable]
18681 |   CitSubPtr  csp;
      |              ^~~
macroapi.c: In function ‘CollectDBLinkObjectsForApply’:
macroapi.c:20029:72: warning: unused variable ‘tmp_tail’ [-Wunused-variable]
20029 |   ValNodePtr     target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp;
      |                                                                        ^~~~~~~~
macroapi.c:20029:55: warning: unused variable ‘tmp_list’ [-Wunused-variable]
20029 |   ValNodePtr     target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp;
      |                                                       ^~~~~~~~
macroapi.c: In function ‘DoConvertActionToObjectListEx’:
macroapi.c:20844:20: warning: unused variable ‘already_added’ [-Wunused-variable]
20844 |   Boolean          already_added, field_change;
      |                    ^~~~~~~~~~~~~
macroapi.c: In function ‘ApplyPartial5SetActionToSeqFeat’:
macroapi.c:25749:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25749 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘ApplyPartial3SetActionToSeqFeat’:
macroapi.c:25872:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25872 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘ApplyPartialBothSetActionToSeqFeat’:
macroapi.c:25939:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25939 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘FindPosBeforeFeat’:
macroapi.c:26236:15: warning: variable ‘regulator’ set but not used [-Wunused-but-set-variable]
26236 |   SeqFeatPtr  regulator = NULL, candidate;
      |               ^~~~~~~~~
macroapi.c: In function ‘PerformAutofixInSeqEntry’:
macroapi.c:29471:8: warning: unused variable ‘num_created’ [-Wunused-variable]
29471 |   Int4 num_created = 0;
      |        ^~~~~~~~~~~
macroapi.c: In function ‘AddFileDescriptors’:
macroapi.c:29871:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
29871 |     while (sdp = SeqDescAsnRead (aip, NULL)) {
      |            ^~~
macroapi.c: In function ‘ApplyMacroToSeqEntryExEx’:
macroapi.c:31907:28: warning: too many arguments for format [-Wformat-extra-args]
31907 |           fprintf (log_fp, "Instantiated protein titles\n", num);
      |                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘PreprocessAddDescriptorListMacro’:
macroapi.c:32020:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
32020 |     while (sdp = SeqDescAsnRead (aip, NULL)) {
      |            ^~~
macroapi.c: In function ‘FieldTypeFromString’:
macroapi.c:32370:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
32370 |     if (ft == NULL && StringsAreEquivalent(str, "location") || StringsAreEquivalent(str, "genome")) {
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘SummarizeRemoveOutsideAction’:
macroapi.c:32939:11: warning: unused variable ‘case_insensitive’ [-Wunused-variable]
32939 |   CharPtr case_insensitive = " (case insensitive)";
      |           ^~~~~~~~~~~~~~~~
macroapi.c: In function ‘GetObjectTableForTabTable’:
macroapi.c:37508:63: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
37508 |   ValNodePtr obj_table = NULL, obj_row, last_obj = NULL, tmp, last = NULL;
      |                                                               ^~~~
macroapi.c: In function ‘FormatMultipleDestinationErrorMessage’:
macroapi.c:37987:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
37987 |     sprintf (buf, "%d", vnp->data.intvalue + 1);
      |                    ~^   ~~~~~~~~~~~~~~~~~~~~~~
      |                     |                      |
      |                     int                    Nlm_Int8 {aka long long int}
      |                    %lld
macroapi.c: In function ‘CheckObjTableForExistingText’:
macroapi.c:38084:14: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
38084 |   Uint2      entityID;
      |              ^~~~~~~~
macroapi.c: In function ‘FixSuspectProductNamesInEntrezGene’:
macroapi.c:40352:18: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable]
40352 |   CharPtr        prefix = NULL;
      |                  ^~~~~~
In file included from ../include/tax3api.h:51,
                 from macroapi.c:67:
macroapi.c: At top level:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
macroapi.c:37233:16: warning: ‘IsFieldTypeProteinDesc’ defined but not used [-Wunused-function]
37233 | static Boolean IsFieldTypeProteinDesc (FieldTypePtr ft)
      |                ^~~~~~~~~~~~~~~~~~~~~~
macroapi.c:27097:13: warning: ‘GetDescriptorTypeFromDescriptorChoice’ defined but not used [-Wunused-function]
27097 | static Int4 GetDescriptorTypeFromDescriptorChoice (Uint1 descriptor_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:21298:13: warning: ‘GetFieldsFromAECR’ defined but not used [-Wunused-function]
21298 | static void GetFieldsFromAECR (AECRActionPtr act, FieldTypePtr PNTR pField, ValNodePtr PNTR pFieldPair)
      |             ^~~~~~~~~~~~~~~~~
macroapi.c:20787:16: warning: ‘NoFieldChange’ defined but not used [-Wunused-function]
20787 | static Boolean NoFieldChange (CharPtr new_val, ValNodePtr vnp, FieldTypePtr field_from, StringConstraintPtr scp, BatchExtraPtr batch_extra)
      |                ^~~~~~~~~~~~~
macroapi.c:16014:13: warning: ‘InitBatchExtraForAECRActionAndObjectList’ defined but not used [-Wunused-function]
16014 | static void InitBatchExtraForAECRActionAndObjectList (BatchExtraPtr batch_extra, AECRActionPtr action, ValNodePtr object_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:10389:16: warning: ‘HasMultiplePrimerSets’ defined but not used [-Wunused-function]
10389 | static Boolean HasMultiplePrimerSets (CharPtr value)
      |                ^~~~~~~~~~~~~~~~~~~~~
macroapi.c:5482:16: warning: ‘DoesLocationMatchConstraint’ defined but not used [-Wunused-function]
 5482 | static Boolean DoesLocationMatchConstraint (SeqLocPtr slp, LocationConstraintPtr lcp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:4590:13: warning: ‘TestAdvancedStringMatch’ defined but not used [-Wunused-function]
 4590 | static void TestAdvancedStringMatch (void)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:2806:13: warning: ‘OriginFromOriginName’ defined but not used [-Wunused-function]
 2806 | static Int4 OriginFromOriginName (CharPtr origin_name)
      |             ^~~~~~~~~~~~~~~~~~~~
macroapi.c:1200:16: warning: ‘IsObjectAppropriateForFieldPair’ defined but not used [-Wunused-function]
 1200 | static Boolean IsObjectAppropriateForFieldPair (Uint1 choice, Pointer data, FieldPairTypePtr fieldpair)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘AlsoChangeMrnaForObject’:
macroapi.c:20637:10: warning: ‘mrna’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20637 |       if (mrna != NULL) {
      |          ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpedit.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salpedit.c:2:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpedit.c: In function ‘SeqAlignInsert’:
salpedit.c:162:12: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable]
  162 |  StdSegPtr ssp;
      |            ^~~
salpedit.c:161:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
  161 |         DenseDiagPtr ddp;
      |                      ^~~
At top level:
salpedit.c:4120:18: warning: ‘build_slp_for_gcontig’ defined but not used [-Wunused-function]
 4120 | static SeqLocPtr build_slp_for_gcontig (BioseqPtr gcontig_bsp, SeqIdPtr gcontig_sip)
      |                  ^~~~~~~~~~~~~~~~~~~~~
salpedit.c:4073:17: warning: ‘get_best_id’ defined but not used [-Wunused-function]
 4073 | static SeqIdPtr get_best_id(BioseqPtr bsp)
      |                 ^~~~~~~~~~~
salpedit.c:4046:16: warning: ‘second_seq_has_gap’ defined but not used [-Wunused-function]
 4046 | static Boolean second_seq_has_gap(BioseqPtr s_bsp)
      |                ^~~~~~~~~~~~~~~~~~
salpedit.c:4016:18: warning: ‘dup_mul_locs’ defined but not used [-Wunused-function]
 4016 | static SeqLocPtr dup_mul_locs(SeqLocPtr slp)
      |                  ^~~~~~~~~~~~
salpedit.c:3968:18: warning: ‘create_fake_bioseq’ defined but not used [-Wunused-function]
 3968 | static BioseqPtr create_fake_bioseq(SeqLocPtr seq_loc, CharPtr fake_name)
      |                  ^~~~~~~~~~~~~~~~~~
salpedit.c:3937:13: warning: ‘reverse_seqloc’ defined but not used [-Wunused-function]
 3937 | static void reverse_seqloc (SeqLocPtr s_loc)
      |             ^~~~~~~~~~~~~~
salpedit.c:3850:13: warning: ‘save_output’ defined but not used [-Wunused-function]
 3850 | static void save_output (SeqIdPtr sip, CharPtr f_name, SeqAlignPtr align)
      |             ^~~~~~~~~~~
salpedit.c:3836:13: warning: ‘get_align_list_len’ defined but not used [-Wunused-function]
 3836 | static Int4 get_align_list_len(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~~~~~~
salpedit.c:2939:20: warning: ‘open_annot’ defined but not used [-Wunused-function]
 2939 | static SeqAnnotPtr open_annot(CharPtr f_name)
      |                    ^~~~~~~~~~
salpedit.c:2835:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function]
 2835 | static void SeqAnnotWrite(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~
salpedit.c:2653:16: warning: ‘FigureAlignRange’ defined but not used [-Wunused-function]
 2653 | static Boolean FigureAlignRange(SeqAlignPtr align, SeqLocPtr m_loc, SeqLocPtr s_loc)
      |                ^~~~~~~~~~~~~~~~
salpedit.c:1665:16: warning: ‘free_diag_in_list’ defined but not used [-Wunused-function]
 1665 | static Boolean free_diag_in_list(ValNodePtr ddp_list, DenseDiagPtr ddp)
      |                ^~~~~~~~~~~~~~~~~
salpedit.c:1605:16: warning: ‘is_overlap’ defined but not used [-Wunused-function]
 1605 | static Boolean is_overlap(BoolPtr status, Int4 from, Int4 len)
      |                ^~~~~~~~~~
salpedit.c:1560:13: warning: ‘filter_wrong_orientation’ defined but not used [-Wunused-function]
 1560 | static void filter_wrong_orientation (SeqAlignPtr align, Boolean same_orient)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
salpedit.c:1479:16: warning: ‘filter_this_seg’ defined but not used [-Wunused-function]
 1479 | static Boolean filter_this_seg (DenseDiagPtr curr, DenseDiagPtr PNTR h_list, Int2 order)
      |                ^~~~~~~~~~~~~~~
salpedit.c:1422:16: warning: ‘convert_ddp_to_array’ defined but not used [-Wunused-function]
 1422 | static Int4Ptr convert_ddp_to_array (ValNodePtr ddp_list, Uint1 strand, Int2 s_order, Int4Ptr p_num)
      |                ^~~~~~~~~~~~~~~~~~~~
salpedit.c:1387:14: warning: ‘has_too_much_overlap’ defined but not used [-Wunused-function]
 1387 | static Uint1 has_too_much_overlap (Int4 start_1, Int4 stop_1, Int4 start_2, Int4 stop_2)
      |              ^~~~~~~~~~~~~~~~~~~~
salpedit.c:1281:13: warning: ‘attach_new_align’ defined but not used [-Wunused-function]
 1281 | static void attach_new_align(SeqAlignPtr new_salp, SeqAlignPtr PNTR old) {
      |             ^~~~~~~~~~~~~~~~
salpedit.c:1169:20: warning: ‘JZSeqAlignMerge’ defined but not used [-Wunused-function]
 1169 | static SeqAlignPtr JZSeqAlignMerge(SeqAlignPtr f_align, SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr t_align)
      |                    ^~~~~~~~~~~~~~~
salpedit.c:254:16: warning: ‘is_gap_segment’ defined but not used [-Wunused-function]
  254 | static Boolean is_gap_segment(Int4Ptr c_starts, Int2 dim)
      |                ^~~~~~~~~~~~~~
salpedit.c:158:20: warning: ‘SeqAlignInsert’ defined but not used [-Wunused-function]
  158 | static SeqAlignPtr SeqAlignInsert(SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr head, Boolean merge, Boolean add_insertion)
      |                    ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpstat.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salpstat.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpstat.c: In function ‘DenseSegStats’:
salpstat.c:310:10: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  310 |   if(dsp && (((mmatches || mmismatches) && bsp_1 && bsp_2)) || !(mmatches || mmismatches)) {
      |      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c: In function ‘SeqAlignScoreFix’:
salpstat.c:162:20: warning: ‘sp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  162 |      sp_last->next = (ScorePtr) MemNew(sizeof(Score));
salpstat.c: In function ‘DenseSegStats’:
salpstat.c:369:31: warning: ‘spp_2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  369 |                       res_2 = SeqPortGetResidue(spp_2);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c:368:31: warning: ‘spp_1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  368 |                       res_1 = SeqPortGetResidue(spp_1);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c: In function ‘SeqAlignWindowScoreFN’:
salpstat.c:2038:45: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2038 |                           residue_score[pos]=score;
      |                           ~~~~~~~~~~~~~~~~~~^~~~~~
salpstat.c:2020:34: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2020 |                       qgaps_score[last_pos]=-(g_open+len*g_ext);
      |                                  ^
salpstat.c: In function ‘SeqAlignWindowScore’:
salpstat.c:2214:12: warning: ‘scoreptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2214 |     return scoreptr;
      |            ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpacc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salpacc.h:33,
                 from salpacc.c:40:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpacc.c: In function ‘SeqAlignStrand’:
salpacc.c:334:20: warning: unused variable ‘this_strand’ [-Wunused-variable]
  334 |           Uint1Ptr this_strand=Seq_strand_unknown;
      |                    ^~~~~~~~~~~
salpacc.c: In function ‘SeqAlignStop’:
salpacc.c:561:13: warning: ‘this_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  561 |           if(this_stop!=-1)
      |             ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salprop.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salprop.h:46,
                 from salprop.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salprop.c: In function ‘CopySeqLocFromSeqAlign’:
salprop.c:398:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  398 |             else
      |             ^~~~
salprop.c:401:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  401 |                if(crp != NULL)   /*for coding region features*/
      |                ^~
salprop.c:291:12: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable]
  291 |    Boolean check_gap;
      |            ^~~~~~~~~
salprop.c: In function ‘FeatListToProp’:
salprop.c:1336:20: warning: variable ‘feat_itemID’ set but not used [-Wunused-but-set-variable]
 1336 |   Uint4            feat_itemID;
      |                    ^~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salprop.c:46:
salprop.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from salprop.c:42:
../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable]
   50 | static CharPtr GBFeat[number_GBFeat] = {
      |                ^~~~~~
salprop.c: In function ‘ApplyNewSeqFeat’:
salprop.c:620:11: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  620 |         j = stop - SeqLocStop(sfp_location);
      |         ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salprop.c:514:17: note: ‘stop’ was declared here
  514 |                 stop,
      |                 ^~~~
salprop.c:718:27: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  718 |      SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight);
      |                        ~~~^~~~~~~~~~
salprop.c:674:17: note: ‘sfp’ was declared here
  674 |   SeqFeatPtr    sfp;
      |                 ^~~
salprop.c:733:24: warning: ‘ppp.p5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  733 |            if (!sfp_p5 && ppp.p5)
      |                ~~~~~~~~^~~~~~~~~
salprop.c:679:17: note: ‘ppp.p5’ was declared here
  679 |   ParTials      ppp;
      |                 ^~~
salprop.c:737:12: warning: ‘ppp.p3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  737 |            SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salprop.c:679:17: note: ‘ppp.p3’ was declared here
  679 |   ParTials      ppp;
      |                 ^~~
salprop.c:861:40: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  861 |                              if ((val2=is_id_unique (entityID, SeqLocId(sfp->product))))
      |                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsap.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salsap.h:57,
                 from salsap.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salsap.c: In function ‘DenseDiagToDenseSegFunc’:
salsap.c:2912:30: warning: variable ‘slpstop2’ set but not used [-Wunused-but-set-variable]
 2912 |                slpstop1 = 0, slpstop2 = 0;
      |                              ^~~~~~~~
salsap.c:2912:16: warning: variable ‘slpstop1’ set but not used [-Wunused-but-set-variable]
 2912 |                slpstop1 = 0, slpstop2 = 0;
      |                ^~~~~~~~
salsap.c:2911:31: warning: variable ‘slpstart2’ set but not used [-Wunused-but-set-variable]
 2911 |   Int4         slpstart1 = 0, slpstart2 = 0,
      |                               ^~~~~~~~~
salsap.c:2911:16: warning: variable ‘slpstart1’ set but not used [-Wunused-but-set-variable]
 2911 |   Int4         slpstart1 = 0, slpstart2 = 0,
      |                ^~~~~~~~~
salsap.c:2909:28: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2909 |   Int4         start1 = 0, start2 = 0,
      |                            ^~~~~~
salsap.c:2909:16: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2909 |   Int4         start1 = 0, start2 = 0,
      |                ^~~~~~
In file included from ../include/sqnutils.h:51,
                 from salsap.c:47:
salsap.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salsap.c:3631:13: warning: ‘FindSeqAlignCallback’ defined but not used [-Wunused-function]
 3631 | static void FindSeqAlignCallback (SeqEntryPtr sep, Pointer mydata,
      |             ^~~~~~~~~~~~~~~~~~~~
salsap.c:2157:16: warning: ‘AreDenseSegSegmentsValid’ defined but not used [-Wunused-function]
 2157 | static Boolean AreDenseSegSegmentsValid (DenseSegPtr dsp, Int4 start, Int4 num)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
salsap.c: In function ‘SeqAlignEndExtend’:
salsap.c:986:18: warning: ‘n_strands’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  986 |    Uint1Ptr      n_strands;
      |                  ^~~~~~~~~
salsap.c: In function ‘CleanStrandsSeqAlign’:
salsap.c:1662:29: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1662 |         for (j=0; j < numseg*dim && strandp!=NULL; j++, strandp++)
      |                       ~~~~~~^~~~
salsap.c:1669:39: warning: ‘numseg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1669 |         for (j=0, k=numseg-1; j<numseg/2; j++, k--) {
      |                                 ~~~~~~^~
salsap.c:1611:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1611 |   Int4Ptr     startp;
      |               ^~~~~~
salsap.c:1671:19: warning: ‘lenp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1671 |            lenp[j]=lenp[k];
      |            ~~~~~~~^~~~~~~~
salsap.c: In function ‘LocalAlignToSeqAnnotDimn’:
salsap.c:1851:9: warning: ‘the_lens’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1851 |   while ( j < lens )
      |         ^
salsap.c: In function ‘multseqalign_from_pairseqalign’:
salsap.c:4394:19: warning: ‘strandp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4394 |            strandp++;
      |            ~~~~~~~^~
salsap.c:4245:6: warning: ‘ok’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4245 |   if (!ok)
      |      ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salstruc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salstruc.h:56,
                 from salstruc.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salstruc.c: In function ‘prot_to_rputprot’:
salstruc.c:734:18: warning: comparison between pointer and zero character constant [-Wpointer-compare]
  734 |      if (strptmp == '\0') break;
      |                  ^~
salstruc.c:734:10: note: did you mean to dereference the pointer?
  734 |      if (strptmp == '\0') break;
      |          ^
salstruc.c: In function ‘data_collect_arrange’:
salstruc.c:1338:22: warning: variable ‘maxscroll’ set but not used [-Wunused-but-set-variable]
 1338 |   Int4               maxscroll;
      |                      ^~~~~~~~~
salstruc.c: In function ‘ShowAlignmentText’:
salstruc.c:2203:29: warning: variable ‘itemtype’ set but not used [-Wunused-but-set-variable]
 2203 |   Uint2           entityID, itemtype;
      |                             ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salstruc.c:40:
salstruc.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from salstruc.c:41:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salstruc.c: In function ‘data_collect_arrange’:
salstruc.c:918:52: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  918 |          if (OBJ_(tdp->feattype) == OBJ_BIOSEQ && (is_seqvisible(entityID, itemID, adp->seq_info)) )
      |                                                   ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salstruc.c:872:19: note: ‘entityID’ was declared here
  872 |   Uint2           entityID;
      |                   ^~~~~~~~
salstruc.c:1093:44: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1093 |                          seq_info->entityID=entityID;
      |                          ~~~~~~~~~~~~~~~~~~^~~~~~~~~
salstruc.c:1005:17: note: ‘entityID’ was declared here
 1005 |   Uint2         entityID;
      |                 ^~~~~~~~
salstruc.c: In function ‘ShowAlignmentText’:
salstruc.c:2256:16: warning: ‘bspsip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2256 |                print_line (fout, NULL, bufstr, leftmargin, adp->columnpcell, bspsip, html_option, FALSE);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salutil.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salutil.c: In function ‘ReadBufferFromSap’:
salutil.c:128:24: warning: variable ‘buffstart’ set but not used [-Wunused-but-set-variable]
  128 |   Int4        bufflen, buffstart;
      |                        ^~~~~~~~~
salutil.c:127:15: warning: variable ‘sumstart’ set but not used [-Wunused-but-set-variable]
  127 |   Int4        sumstart;
      |               ^~~~~~~~
salutil.c: In function ‘IS_protSeqLoc’:
salutil.c:594:11: warning: variable ‘seq’ set but not used [-Wunused-but-set-variable]
  594 |   CharPtr seq;
      |           ^~~
salutil.c: In function ‘ReplaceSeqIdWithSeqId’:
salutil.c:1236:20: warning: variable ‘oldscope’ set but not used [-Wunused-but-set-variable]
 1236 |   SeqEntryPtr      oldscope;
      |                    ^~~~~~~~
salutil.c: In function ‘del_ssp_fromid’:
salutil.c:1722:24: warning: variable ‘pressp’ set but not used [-Wunused-but-set-variable]
 1722 |   SelEdStructPtr ssp,  pressp = NULL;
      |                        ^~~~~~
salutil.c: In function ‘checkCDSselect_forprotein’:
salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2510 |         if (feat != NULL)
      |            ^
salutil.c: In function ‘NoMoreSegGapForOneAlignment’:
salutil.c:3647:8: warning: implicit declaration of function ‘AlnMgr2IndexSingleChildSeqAlign’ [-Wimplicit-function-declaration]
 3647 |        AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salutil.c:53:
salutil.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salutil.c: In function ‘sesp_to_slp’:
salutil.c:1927:18: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1927 |   Int2           j,k;
      |                  ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udvseq.h:100,
                 from udvseq.c:112:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvseq.c: In function ‘UDV_EncodeIdxFeat’:
udvseq.c:448:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  448 |  return *((Int4Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~
udvseq.c: In function ‘UDV_BigEncodeIdxFeat’:
udvseq.c:473:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  473 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
udvseq.c: In function ‘UDV_ParaGFTableFeatures’:
udvseq.c:947:22: warning: ‘nFeatLines’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  947 |       pgp->nFeatLines=nFeatLines/*-decal*/;
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~~
udvseq.c:966:32: warning: ‘PosFeat’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  966 |         (Uint2) context->index,(Uint2)PosFeat-decal,(Uint2)0));
      |                                ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blocks.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/blocks.h:88,
                 from blocks.c:93:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blocks.c: In function ‘IndexBlocks’:
blocks.c:928:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point]
  928 |    segp_align->to = segp_align->to = -1;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
blocks.c: In function ‘IndexNewBlocks’:
blocks.c:1084:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point]
 1084 |    segp_align->to = segp_align->to = -1;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
blocks.c: In function ‘GetBlockOrientation’:
blocks.c:2383:11: warning: ‘orient’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2383 |    return orient;
      |           ^~~~~~
blocks.c: In function ‘SAMergeBlocks’:
blocks.c:2165:21: warning: ‘tmp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2165 |                tmp2 = tmp2->next;
      |                ~~~~~^~~~~~~~~~~~
blocks.c:1572:28: warning: ‘tmp_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1572 |          merged->segp_head = tmp_head;
      |          ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
blocks.c:1470:27: warning: ‘tmp_curr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1470 |                tmp1->prev = tmp_curr;
      |                ~~~~~~~~~~~^~~~~~~~~~
blocks.c:1709:27: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1709 |                tmp1->prev = prev;
      |                ~~~~~~~~~~~^~~~~~
blocks.c:1670:34: warning: ‘new_sabp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1670 |             new_sabp1->segp_head = tmp_head;
      |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
blocks.c: In function ‘SASplitBlock’:
blocks.c:2796:25: warning: ‘segp2_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2796 |             segp2->prev = segp2_prev;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pgppop.c
pgppop.c:58:2: warning: missing braces around initializer [-Wmissing-braces]
   58 |  {
      |  ^
   59 |      /* Red  Grn Blue     Color     ColorID             Old Hex  New Hex */
   60 |    255, 255, 255, /* default     0                 0xffffff - */
      |    {            }
   61 |    255,  00, 153, /* hotpink     1                 0xff1493 0xff0099 */
      |    {            }
   62 |    255,   0, 255, /* magenta     2                 0xff00ff - */
      |    {            }
   63 |    153,  51, 255, /* purple      3                 0x9b30ff 0x9933ff */
      |    {            }
   64 |      0,   0, 255, /* blue        4                 0x0000ff - */
      |      {          }
   65 |     00, 153, 255, /* sky         5                 0x1e90ff 0x0099ff */
      |     {           }
   66 |      0, 255, 255, /* cyan        6                 0x00ffff - */
      |      {          }
   67 |      0, 255, 153, /* sea         7                 0x00ff8f 0x00ff99 */
      |      {          }
   68 |      0, 255,   0, /* green       8                 0x00ff00 - */
      |      {          }
   69 |    255, 255,   0, /* yellow      9                 0xffff00 - */
      |    {            }
   70 |    255, 204,   0, /* gold       10                 0xffa500 0xffcc00 */
      |    {            }
   71 |    255, 102,   0, /* orange     11                 0xff4500 0xff6600 */
      |    {            }
   72 |    255,   0,   0, /* red        12                 0xff0000 - */
      |    {            }
   73 |    255, 153, 153, /* pink       13                 0xff7256 0xff9999 */
      |    {            }
   74 |    255, 204, 204, /* pinktint   14                 0xffaeb9 0xffcccc */
      |    {            }
   75 |    255, 255, 255, /* white      15                0xffffff  -*/
      |    {            }
   76 |      0,   0,   0, /* black      16                0x000000 - */
      |      {          }
   77 |    204, 204, 255, /* bluetint   17                0xb0e2ff - 0xccccff*/
      |    {            }
   78 |    153, 255, 153, /* greentint  18                0x9aff9a - 0x99ff99 */
      |    {            }
   79 |    255, 255, 153, /* yellowtint 19                0xffec8b - 0xffff99 */
      |    {            }
   80 |    102, 102, 102, /* gray       20                0x7d7d7d   0x666666 */
      |    {            }
   81 |    153, 102,  51, /* brown      21                0x8b5742   01x996633 */
      |    {            }
   82 |    255,   0,   0, /* perm colors 22: red          0xff0000 - */
      |    {            }
   83 |      0, 255,   0, /* perm colors 23: green        0x00ff00 - */
      |      {          }
   84 |    255,   0, 255, /* perm colors 24: magenta      0xff00ff - */
      |    {            }
   85 |     00, 153, 255, /* perm colors 25: sky          0x1e90ff 0x0099ff */
      |     {           }
   86 |    153,  51, 255, /* perm colors 26: purple        0x9b30ff 0x9933ff */
      |    {            }
   87 |      0, 255,   0, /* SS colors 27: helix, green   0x00ff00 - */
      |      {          }
   88 |    255, 204,   0, /* SS colors 28: strand, gold   0xffa500 0xffcc00 */
      |    {            }
   89 |    255, 102,   0, /* SS colors 29: turn, orange   0xff4500 0xff6600 */
      |    {            }
   90 |      0, 255, 255, /* SS colors 30: coil, cyan     ox00ffff - */
      |      {          }
   91 |    255, 255,   0, /* highlight colors 31: yellow  0xffff00 - */
      |    {            }
   92 |      0,   0,   0 /* background colors 32: black  0x000000 - */
      |      {
   93 |  };
      |  }
pgppop.c: In function ‘DDV_WWW_get_CDS_minus’:
pgppop.c:329:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
  329 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
pgppop.c:327:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable]
  327 |     numivals2=0;
      |     ^~~~~~~~~
pgppop.c: In function ‘DDV_WWW_get_CDS_plus’:
pgppop.c:451:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
  451 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
pgppop.c: In function ‘DDV_DisplayTopScale’:
pgppop.c:1300:7: warning: unused variable ‘szBlank’ [-Wunused-variable]
 1300 | Char  szBlank[TABLE_LEFT_MARGIN+5]={""};
      |       ^~~~~~~
pgppop.c: In function ‘DDV_GetBLASTCompLine_1’:
pgppop.c:1736:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1736 |                     if (matrix[s][q]>0){
      |                               ^
pgppop.c:1736:34: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1736 |                     if (matrix[s][q]>0){
      |                                  ^
pgppop.c: In function ‘DDV_DisplayDefaultAlign’:
pgppop.c:3169:13: warning: unused variable ‘sabp’ [-Wunused-variable]
 3169 | SABlockPtr  sabp=NULL;/*indexed SeqAlign*/
      |             ^~~~
pgppop.c: In function ‘DDV_ShowSeqAlign’:
pgppop.c:3512:10: warning: unused variable ‘szPopSetAuth’ [-Wunused-variable]
 3512 |     Char szPopSetAuth[INFO_SIZE+1]={""};
      |          ^~~~~~~~~~~~
pgppop.c:3510:10: warning: unused variable ‘szPopSetName’ [-Wunused-variable]
 3510 |     Char szPopSetName[INFO_SIZE+1]={""};/*article title of the Pop-Set*/
      |          ^~~~~~~~~~~~
pgppop.c: In function ‘DDV_PrintPopSetSummary’:
pgppop.c:3683:9: warning: variable ‘bPairwise’ set but not used [-Wunused-but-set-variable]
 3683 | Boolean bPairwise=TRUE,bPrintTax,bPrintCom;
      |         ^~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from pgppop.c:49:
pgppop.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/ddvcreate.h:143,
                 from pgppop.c:54:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
pgppop.c:2664:13: warning: ‘DDV_PrintFastaGappedSequence’ defined but not used [-Wunused-function]
 2664 | static void DDV_PrintFastaGappedSequence(CharPtr szSequence,FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c:2617:13: warning: ‘DDV_GetGappedSequence’ defined but not used [-Wunused-function]
 2617 | static void DDV_GetGappedSequence(SegmentPtr segp,CharPtr szSequence,
      |             ^~~~~~~~~~~~~~~~~~~~~
pgppop.c:1841:13: warning: ‘DDV_HideMaskedLetters’ defined but not used [-Wunused-function]
 1841 | static void DDV_HideMaskedLetters(CharPtr szSeqMaster,ParaGPtr pgp,ValNodePtr mask)
      |             ^~~~~~~~~~~~~~~~~~~~~
pgppop.c:314:13: warning: ‘DDV_WWW_get_CDS_minus’ defined but not used [-Wunused-function]
  314 | static void DDV_WWW_get_CDS_minus(SeqMgrFeatContextPtr context,Int4 start,
      |             ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from pgppop.c:51:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
pgppop.c: In function ‘DDV_GetPubValues’:
pgppop.c:2873:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2873 |   sprintf(szBuf,"%d",year);
      |                    ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from pgppop.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 6
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c: In function ‘DDV_PopDisplay2’:
pgppop.c:998:22: warning: ‘pgp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  998 |      pgp2->StopLetter=pgp2->StartLetter+AbsLengthAli-1;
      |      ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c:1004:14: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1004 |     vnp->next=NULL;
      |              ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF samutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/samutil.h:230,
                 from samutil.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
samutil.c: In function ‘SAM_AlignIdComp’:
samutil.c:796:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  796 |     if ((a == NULL) || (b == NULL))
      |     ^~
samutil.c:799:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  799 |  choice = a->choice;
      |  ^~~~~~
samutil.c: In function ‘SAM_AlignIdDup’:
samutil.c:852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  852 |     if (oldid == NULL)
      |     ^~
samutil.c:855:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  855 |  newid = ValNodeNew(NULL);
      |  ^~~~~
samutil.c: In function ‘DDE_FreeStack’:
samutil.c:1556:11: warning: operation on ‘Index’ may be undefined [-Wsequence-point]
 1556 |     Index = ++Index % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Add’:
samutil.c:1611:22: warning: operation on ‘pStack->StackMin’ may be undefined [-Wsequence-point]
 1611 |     pStack->StackMin = ++pStack->StackMin % DDE_STACK_SIZE;
samutil.c:1622:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1622 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Prev’:
samutil.c:1686:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1686 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Next’:
samutil.c:1717:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1717 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_ShowRow’:
samutil.c:1984:26: warning: variable ‘NumRows’ set but not used [-Wunused-but-set-variable]
 1984 |   Int4                i, NumRows, HiRow, LowRow, tmp1, tmp2;
      |                          ^~~~~~~
samutil.c: In function ‘DDE_AddGapToEndOfAllRows’:
samutil.c:3106:41: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 3106 |   ValNodePtr        ptxtList, last_vnp, vnp;
      |                                         ^~~
samutil.c: In function ‘DDE_RightAddNode’:
samutil.c:3707:33: warning: variable ‘new_vnp’ set but not used [-Wunused-but-set-variable]
 3707 |   ValNodePtr     vnp, next_vnp, new_vnp;
      |                                 ^~~~~~~
samutil.c: In function ‘DDE_LeftMergeAndAddNodeList’:
samutil.c:3757:24: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable]
 3757 |   Boolean     RetVal1, RetVal2, IsLeftAlignedGap, NodeDeleted;
      |                        ^~~~~~~
samutil.c: In function ‘DDE_RightMergeAndAddNodeList’:
samutil.c:3813:38: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable]
 3813 |   Boolean     RetVal=FALSE, RetVal1, RetVal2, HeadChanged;
      |                                      ^~~~~~~
samutil.c: In function ‘DDE_ShiftRightBoundaryLeft1’:
samutil.c:4592:41: warning: variable ‘Index’ set but not used [-Wunused-but-set-variable]
 4592 |   Int4           NumBlocks, i, NumRows, Index, BlockCount=0;
      |                                         ^~~~~
samutil.c: In function ‘DDE_CreateArraysForDenseSeg’:
samutil.c:5028:22: warning: variable ‘NumSegs’ set but not used [-Wunused-but-set-variable]
 5028 |   Int4      NumRows, NumSegs, i, StartIndex, StopIndex, ArrayIndex=0;
      |                      ^~~~~~~
samutil.c: In function ‘DDE_GetLastVNP’:
samutil.c:3143:9: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3143 |   return(last_vnp);
      |         ^
samutil.c: In function ‘DDE_GetNumResidues’:
samutil.c:3166:13: warning: ‘to’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3166 |   return((to-from) + 1);
      |          ~~~^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcolor.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvcolor.c:160:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvcolor.c: In function ‘DDV_GetColor’:
ddvcolor.c:1422:10: warning: unused variable ‘retval’ [-Wunused-variable]
 1422 |     Int4 retval = 0;
      |          ^~~~~~
In file included from ../include/samutil.h:234,
                 from ddvcolor.c:165:
ddvcolor.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/viewmgr.h:111,
                 from viewmgr.c:165:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from viewmgr.c:167:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from viewmgr.c:168:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
viewmgr.c:683:13: warning: ‘ViewMgr_Swap’ defined but not used [-Wunused-function]
  683 | static void ViewMgr_Swap(SeqAlign *salp1, SeqAlign *salp2)
      |             ^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcreate.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ddvcreate.h:142,
                 from ddvcreate.c:245:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvcreate.c:290:2: warning: missing braces around initializer [-Wmissing-braces]
  290 |  {
      |  ^
  291 |      /* Red  Grn Blue     Color     ColorID             Old Hex  New Hex */
  292 |    255, 255, 255, /* default     0                 0xffffff - */
      |    {            }
  293 |    255,   0, 153, /* hotpink     1                 0xff1493 0xff0099 */
      |    {            }
  294 |    255,   0, 255, /* magenta     2                 0xff00ff - */
      |    {            }
  295 |    153,  51, 255, /* purple      3                 0x9b30ff 0x9933ff */
      |    {            }
  296 |      0,   0, 255, /* blue        4                 0x0000ff - */
      |      {          }
  297 |     00, 153, 255, /* sky         5                 0x1e90ff 0x0099ff */
      |     {           }
  298 |      0, 255, 255, /* cyan        6                 0x00ffff - */
      |      {          }
  299 |      0, 255, 153, /* sea         7                 0x00ff8f 0x00ff99 */
      |      {          }
  300 |      0, 192,   0, /* green       8                 0x00ff00 - */
      |      {          }
  301 |    255, 255,   0, /* yellow      9                 0xffff00 - */
      |    {            }
  302 |    255, 204,   0, /* gold       10                 0xffa500 0xffcc00 */
      |    {            }
  303 |    255, 102,   0, /* orange     11                 0xff4500 0xff6600 */
      |    {            }
  304 |    255,   0,   0, /* red        12                 0xff0000 - */
      |    {            }
  305 |    255, 153, 153, /* pink       13                 0xff7256 0xff9999 */
      |    {            }
  306 |    255, 204, 204, /* pinktint   14                 0xffaeb9 0xffcccc */
      |    {            }
  307 |    255, 255, 255, /* white      15                0xffffff  -*/
      |    {            }
  308 |      0,   0,   0, /* black      16                0x000000 - */
      |      {          }
  309 |    204, 204, 255, /* bluetint   17                0xb0e2ff - 0xccccff*/
      |    {            }
  310 |    153, 255, 153, /* greentint  18                0x9aff9a - 0x99ff99 */
      |    {            }
  311 |    255, 255, 153, /* yellowtint 19                0xffec8b - 0xffff99 */
      |    {            }
  312 |    102, 102, 102, /* gray       20                0x7d7d7d   0x666666 */
      |    {            }
  313 |    153, 102,  51, /* brown      21                0x8b5742   01x996633 */
      |    {            }
  314 |    255,   0,   0, /* perm colors 22: red          0xff0000 - */
      |    {            }
  315 |      0, 255,   0, /* perm colors 23: green        0x00ff00 - */
      |      {          }
  316 |    255,   0, 255, /* perm colors 24: magenta      0xff00ff - */
      |    {            }
  317 |     00, 153, 255, /* perm colors 25: sky          0x1e90ff 0x0099ff */
      |     {           }
  318 |    153,  51, 255, /* perm colors 26: purple        0x9b30ff 0x9933ff */
      |    {            }
  319 |      0, 255,   0, /* SS colors 27: helix, green   0x00ff00 - */
      |      {          }
  320 |    255, 204,   0, /* SS colors 28: strand, gold   0xffa500 0xffcc00 */
      |    {            }
  321 |    255, 102,   0, /* SS colors 29: turn, orange   0xff4500 0xff6600 */
      |    {            }
  322 |      0, 255, 255, /* SS colors 30: coil, cyan     ox00ffff - */
      |      {          }
  323 |    255, 255,   0, /* highlight colors 31: yellow  0xffff00 - */
      |    {            }
  324 |      0,   0,   0 /* background colors 32: black  0x000000 - */
      |      {
  325 |  };
      |  }
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_1’:
ddvcreate.c:493:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  493 |          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
      |                 ^~~~
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_2’:
ddvcreate.c:529:21: warning: variable ‘more’ set but not used [-Wunused-but-set-variable]
  529 |    Boolean          more;
      |                     ^~~~
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_EX2’:
ddvcreate.c:779:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  779 |          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
      |                 ^~~~
ddvcreate.c:690:21: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
  690 |    Boolean          last;
      |                     ^~~~
ddvcreate.c:686:21: warning: variable ‘PopulateTo’ set but not used [-Wunused-but-set-variable]
  686 |    Int4             PopulateTo;
      |                     ^~~~~~~~~~
ddvcreate.c: In function ‘DDV_DisplayNewBLAST’:
ddvcreate.c:1942:16: warning: variable ‘what’ set but not used [-Wunused-but-set-variable]
 1942 | Uint1          what;
      |                ^~~~
ddvcreate.c: In function ‘UDV_BigEncodeIdxFeat4’:
ddvcreate.c:2878:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
 2878 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/ddvcreate.h:143,
                 from ddvcreate.c:245:
ddvcreate.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ddvcreate.c:249:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvcreate.c:2362:16: warning: ‘DDV_DisplayBlastSAP’ defined but not used [-Wunused-function]
 2362 | static Boolean DDV_DisplayBlastSAP(SeqAlignPtr sap, ValNodePtr mask,
      |                ^~~~~~~~~~~~~~~~~~~
ddvcreate.c:525:16: warning: ‘DDV_CreateDisplayFromIndex_2’ defined but not used [-Wunused-function]
  525 | static Boolean DDV_CreateDisplayFromIndex_2(SeqAlignPtr sap, MsaParaGPopListPtr mpplp, Int2 LineSize)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘UAMgrIntUAMsg’:
ddvcreate.c:1201:60: warning: ‘halfBspLengthSeqR’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1201 |    UABitDescrInit(&uamp->ubd[1],halfBspLengthSeqL,MaxLength-halfBspLengthSeqR-1,TRUE);
      |                                                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~
ddvcreate.c:1158:24: note: ‘halfBspLengthSeqR’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                        ^~~~~~~~~~~~~~~~~
ddvcreate.c:1141:11: warning: ‘halfBspLengthSeqL’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1141 |  ubd->from=Start;
      |  ~~~~~~~~~^~~~~~
ddvcreate.c:1158:6: note: ‘halfBspLengthSeqL’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |      ^~~~~~~~~~~~~~~~~
ddvcreate.c:1141:11: warning: ‘stop_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1141 |  ubd->from=Start;
      |  ~~~~~~~~~^~~~~~
ddvcreate.c:1158:73: note: ‘stop_middle’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                                                                         ^~~~~~~~~~~
ddvcreate.c:1195:4: warning: ‘start_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1195 |    UABitDescrInit(&uamp->ubd[0],0,start_middle-1,TRUE);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c:1158:60: note: ‘start_middle’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                                                            ^~~~~~~~~~~~
ddvcreate.c: In function ‘DDV_PopulateDisplayForDisc’:
ddvcreate.c:1048:16: warning: ‘vnp_para’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1048 |   vnp_list[n-1]=vnp_para;
      |   ~~~~~~~~~~~~~^~~~~~~~~
ddvcreate.c: In function ‘UABuildDescriptor2’:
ddvcreate.c:1541:13: warning: ‘stopcopy’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1541 |   *TotLength+=(stopcopy-startcopy);/*to be used for the display coord. system*/
      |             ^~
ddvcreate.c: In function ‘DDV_DumpSAPInAFile’:
ddvcreate.c:1798:2: warning: ‘matrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1798 |  DDV_AffichageParaG(mpplp,0,0,mpplp->LengthAli-1,mpplp->LengthAli,0,option,
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1799 |   LineSize,hFile,byteSpp,matrix,gclr,NULL);
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘DDV_ReadSeqBin’:
ddvcreate.c:2593:9: warning: ‘btr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2593 |  return btr;
      |         ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jsavlt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/jsavlt.h:4,
                 from jsavlt.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF needleman.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/needleman.h:40,
                 from needleman.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
needleman.c: In function ‘NeedlemanWunschQuadraticByLoc’:
needleman.c:281:24: warning: variable ‘bestDbPos’ set but not used [-Wunused-but-set-variable]
  281 |     Int4 bestQueryPos, bestDbPos; /*position ending best score in
      |                        ^~~~~~~~~
needleman.c:281:10: warning: variable ‘bestQueryPos’ set but not used [-Wunused-but-set-variable]
  281 |     Int4 bestQueryPos, bestDbPos; /*position ending best score in
      |          ^~~~~~~~~~~~
needleman.c: In function ‘FetchSequenceByLoc’:
needleman.c:243:12: warning: ‘query’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  243 |     return query;
      |            ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF txalign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
txalign.c: In function ‘addLinkoutForDefline’:
txalign.c:188:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable]
  188 |     Boolean hasLinkout=FALSE;
      |             ^~~~~~~~~~
txalign.c: In function ‘addLinkoutForBioseq’:
txalign.c:256:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable]
  256 |     Boolean hasLinkout=FALSE;
      |             ^~~~~~~~~~
txalign.c: In function ‘DrawTextToBuffer’:
txalign.c:1254:88: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 1254 |        snprintf(checkboxBuf, 200, "<input type=\"checkbox\" name=\"getSeqGi\" value=\"%d\" onClick=\"synchronizeCheck(this.value, 'getSeqAlignment%d', 'getSeqGi', this.checked)\">", sip->data.intvalue, query_number_glb);
      |                                                                                       ~^                                                                                              ~~~~~~~~~~~~~~~~~~
      |                                                                                        |                                                                                                       |
      |                                                                                        int                                                                                                     Nlm_Int8 {aka long long int}
      |                                                                                       %lld
txalign.c: In function ‘load_align_sum_for_StdSeg’:
txalign.c:2230:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2230 |             if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
      |                 ^~~
txalign.c: In function ‘ShowAlignNodeText2Ex’:
txalign.c:3030:13: warning: variable ‘is_end’ set but not used [-Wunused-but-set-variable]
 3030 |     Boolean is_end, strip_semicolon=TRUE;
      |             ^~~~~~
txalign.c: In function ‘Tx_PrintDefLine’:
txalign.c:4079:7: warning: unused variable ‘seqid_length’ [-Wunused-variable]
 4079 |  Int4 seqid_length = 0, total_length = 0;
      |       ^~~~~~~~~~~~
txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath’:
txalign.c:4494:39: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 4494 |             } else if (bestid != NULL && !(options & TXALIGN_NO_DUMPGNL) || (options & TXALIGN_NO_ENTREZ))
      |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4498:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 4498 |                             if (bsp = BioseqLockById(bestid)) {
      |                                 ^~~
txalign.c:4200:10: warning: unused variable ‘ColumnDistance’ [-Wunused-variable]
 4200 |     Int2 ColumnDistance=2, extraSpace=0, extraSpace2=0, strLen=0, maxEvalWidth=5, maxNWidth=2;
      |          ^~~~~~~~~~~~~~
txalign.c:4192:43: warning: unused variable ‘sip_list’ [-Wunused-variable]
 4192 |     SeqIdPtr bestid, gi_list, subject_id, sip_list=NULL, last_id;
      |                                           ^~~~~~~~
txalign.c:4188:17: warning: variable ‘ptr_start’ set but not used [-Wunused-but-set-variable]
 4188 |     Char *ptr, *ptr_start, *eval_buff_ptr, *bit_score_buff_ptr;
      |                 ^~~~~~~~~
txalign.c: In function ‘FormatScoreFromSeqAlignEx’:
txalign.c:4817:25: warning: unused variable ‘t_adj’ [-Wunused-variable]
 4817 |         Int4 m_adj = 0, t_adj = 0;
      |                         ^~~~~
txalign.c:4816:29: warning: unused variable ‘last_t_to’ [-Wunused-variable]
 4816 |         Int4 last_m_to = 0, last_t_to = 0;
      |                             ^~~~~~~~~
txalign.c: In function ‘FSFPrintOneDefline’:
txalign.c:4925:14: warning: variable ‘seqid_len’ set but not used [-Wunused-but-set-variable]
 4925 |     Int4 gi, seqid_len = 0;
      |              ^~~~~~~~~
txalign.c: In function ‘FormatScoreFunc’:
txalign.c:5142:13: warning: variable ‘allocated’ set but not used [-Wunused-but-set-variable]
 5142 |     Boolean allocated, first;
      |             ^~~~~~~~~
txalign.c: In function ‘OOFShowSingleAlignment’:
txalign.c:5808:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 5808 |             else if(matrix[line1[line_index]][line2[line_index]] > 0)
      |                            ~~~~~^~~~~~~~~~~~
txalign.c:5808:52: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 5808 |             else if(matrix[line1[line_index]][line2[line_index]] > 0)
      |                                               ~~~~~^~~~~~~~~~~~
txalign.c:5575:13: warning: variable ‘lines’ set but not used [-Wunused-but-set-variable]
 5575 |     Int4 i, lines, k, shift_info = 0;
      |             ^~~~~
txalign.c: In function ‘OOFDisplayTraceBack1’:
txalign.c:6063:33: warning: unused variable ‘st’ [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:6063:9: warning: unused variable ‘tmp’ [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |         ^~~
txalign.c: In function ‘OOFDisplayTraceBack2’:
txalign.c:6137:33: warning: unused variable ‘st’ [-Wunused-variable]
 6137 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c: In function ‘FDGetTaxNamesFromBioseq’:
txalign.c:6239:21: warning: variable ‘bdsp’ set but not used [-Wunused-but-set-variable]
 6239 |     BlastDefLinePtr bdsp;
      |                     ^~~~
txalign.c: At top level:
txalign.c:310:19: warning: ‘ProcessTextInsertion’ declared ‘static’ but never defined [-Wunused-function]
  310 | static ValNodePtr ProcessTextInsertion PROTO((AlignNodePtr anp, Int4 m_left, Int4 m_right, BioseqPtr bsp, Int4 line_len, Int1 frame));
      |                   ^~~~~~~~~~~~~~~~~~~~
txalign.c:6137:33: warning: ‘st’ defined but not used [-Wunused-variable]
 6137 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:6063:9: warning: ‘tmp’ defined but not used [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |         ^~~
txalign.c:6063:33: warning: ‘st’ defined but not used [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:2915:1: warning: ‘get_seq_id’ defined but not used [-Wunused-function]
 2915 | get_seq_id(SeqAlignPtr sap, Int2 index)
      | ^~~~~~~~~~
txalign.c:1820:16: warning: ‘has_hit_in_region’ defined but not used [-Wunused-function]
 1820 | static Boolean has_hit_in_region(Uint1Ptr all_frame)
      |                ^~~~~~~~~~~~~~~~~
txalign.c:112:16: warning: ‘getNameInitials’ defined but not used [-Wunused-function]
  112 | static CharPtr getNameInitials(CharPtr name){
      |                ^~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
txalign.c: In function ‘DrawTextToBuffer’:
../include/ncbistr.h:331:19: warning: ‘HTML_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
txalign.c:1094:10: note: ‘HTML_buffer’ was declared here
 1094 |  CharPtr HTML_buffer;
      |          ^~~~~~~~~~~
txalign.c: In function ‘OOFShowSingleAlignment.constprop’:
txalign.c:73:17: warning: ‘pro_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   73 | #define fprintf tx_fprintf
      |                 ^~~~~~~~~~
txalign.c:5571:48: note: ‘pro_line_start’ was declared here
 5571 |     Int4 dna_index, pro_index, dna_line_start, pro_line_start;
      |                                                ^~~~~~~~~~~~~~
txalign.c:73:17: warning: ‘dna_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   73 | #define fprintf tx_fprintf
      |                 ^~~~~~~~~~
txalign.c:5571:32: note: ‘dna_line_start’ was declared here
 5571 |     Int4 dna_index, pro_index, dna_line_start, pro_line_start;
      |                                ^~~~~~~~~~~~~~
txalign.c: In function ‘find_score_in_align’:
txalign.c:2080:35: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2080 |                       stdaa_res = SeqMapTableConvert(smtp, t_res);
      |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:1980:20: note: ‘smtp’ was declared here
 1980 |     SeqMapTablePtr smtp;
      |                    ^~~~
txalign.c:1945:13: warning: ‘t_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1945 |             SeqPortFree(t_spp);
      |             ^~~~~~~~~~~~~~~~~~
txalign.c:1876:23: note: ‘t_spp’ was declared here
 1876 |     SeqPortPtr m_spp, t_spp;
      |                       ^~~~~
txalign.c:1942:11: warning: ‘m_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1942 |         if(m_spp == NULL)
      |           ^
txalign.c:1876:16: note: ‘m_spp’ was declared here
 1876 |     SeqPortPtr m_spp, t_spp;
      |                ^~~~~
txalign.c: In function ‘ShowAlignNodeText2Ex.constprop’:
txalign.c:1753:28: warning: ‘m_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1753 |      n = MAX(0, (master_len-1 - m_stop)/3 -1);
      |                            ^
txalign.c:3025:10: note: ‘m_len’ was declared here
 3025 |     Int4 m_len;   /*length of the master sequence*/
      |          ^~~~~
txalign.c: In function ‘ShowTextAlignFromAnnot3’:
txalign.c:949:12: warning: ‘retval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  949 |     return retval;
      |            ^~~~~~
txalign.c: In function ‘FormatScoreFunc’:
txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=]
 4747 |    sprintf(buffer, "%d", frame);
      |                     ^~
txalign.c:4747:20: note: directive argument in the range [-32768, 32767]
 4747 |    sprintf(buffer, "%d", frame);
      |                    ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=]
 4743 |    sprintf(buffer, "+%d", frame);
      |                      ^~
txalign.c:4743:20: note: directive argument in the range [-32768, 32767]
 4743 |    sprintf(buffer, "+%d", frame);
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=]
 4747 |    sprintf(buffer, "%d", frame);
      |                     ^~
txalign.c:4747:20: note: directive argument in the range [-32768, 32767]
 4747 |    sprintf(buffer, "%d", frame);
      |                    ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=]
 4743 |    sprintf(buffer, "+%d", frame);
      |                      ^~
txalign.c:4743:20: note: directive argument in the range [-32768, 32767]
 4743 |    sprintf(buffer, "+%d", frame);
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=]
 4747 |    sprintf(buffer, "%d", frame);
      |                     ^~
txalign.c:4747:20: note: directive argument in the range [-32768, 32767]
 4747 |    sprintf(buffer, "%d", frame);
      |                    ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=]
 4743 |    sprintf(buffer, "+%d", frame);
      |                      ^~
txalign.c:4743:20: note: directive argument in the range [-32768, 32767]
 4743 |    sprintf(buffer, "+%d", frame);
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=]
 4747 |    sprintf(buffer, "%d", frame);
      |                     ^~
txalign.c:4747:20: note: directive argument in the range [-32768, 32767]
 4747 |    sprintf(buffer, "%d", frame);
      |                    ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=]
 4743 |    sprintf(buffer, "+%d", frame);
      |                      ^~
txalign.c:4743:20: note: directive argument in the range [-32768, 32767]
 4743 |    sprintf(buffer, "+%d", frame);
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath.part.0’:
txalign.c:4647:50: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=]
 4647 |                     sprintf(buffer1, "<a href = #%s>%s</a>", id_buffer, bit_score_buff_ptr);
      |                                                  ^~          ~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 17 and 2074 bytes into a destination of size 2049
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4645:51: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2037 [-Wformat-overflow=]
 4645 |                     sprintf(buffer1, " <a href = #%s>%s</a>", id_buffer, bit_score_buff_ptr);
      |                                                   ^~          ~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 18 and 2074 bytes into a destination of size 2049
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fdlobj.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from fdlobj.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
fdlobj.c: In function ‘BlastDefLineSetAsnRead’:
fdlobj.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
fdlobj.c: In function ‘BlastDefLineAsnRead’:
fdlobj.c:202:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  202 |    AsnReadFunc func;
      |                ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/alignmgr2.h:110,
                 from alignmgr2.c:242:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignmgr2.c: In function ‘AlnMgr2IndexSingleDenseSegSA’:
alignmgr2.c:885:13: warning: statement with no effect [-Wunused-value]
  885 |             for (j; j<dsp->numseg && next == -1; j++)
      |             ^~~
alignmgr2.c: In function ‘AlnMgr2CopySeg’:
alignmgr2.c:2984:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2984 |       if (ldelta = ABS(s->beg - beg)) {
      |           ^~~~~~
alignmgr2.c: In function ‘AlnMgr2AddInNewPairwiseSA’:
alignmgr2.c:3221:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3221 |   while (a = AlnMgr2GetNextSeqPiece(a)) {
      |          ^
alignmgr2.c:3223:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3223 |     while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
      |            ^
alignmgr2.c:3233:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3233 |   while (A = AlnMgr2GetNextSeqPiece(A)) {
      |          ^
alignmgr2.c:3237:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3237 |       while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
      |              ^
alignmgr2.c: In function ‘AlnMgr2SetUnaln’:
alignmgr2.c:5410:22: warning: variable ‘dsp’ set but not used [-Wunused-but-set-variable]
 5410 |    DenseSegPtr       dsp;
      |                      ^~~
alignmgr2.c: In function ‘AlnMgr2PrintSeqAlign’:
alignmgr2.c:5623:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 5623 |          while (more = AlnMgr2GetNextAlnBit(sap, amp))
      |                 ^~~~
alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’:
alignmgr2.c:5719:21: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
 5719 |    Boolean          found;
      |                     ^~~~~
alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’:
alignmgr2.c:6085:22: warning: variable ‘saip’ set but not used [-Wunused-but-set-variable]
 6085 |    SAIndex2Ptr       saip;
      |                      ^~~~
alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’:
alignmgr2.c:6331:7: warning: statement with no effect [-Wunused-value]
 6331 |       for (i; i<interrupt->segnum; i++)
      |       ^~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLength’:
alignmgr2.c:6774:20: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 6774 |    if (saip->unaln == FALSE || fill_in == FALSE)
      |                    ^~
alignmgr2.c:6774:8: note: did you mean to dereference the pointer?
 6774 |    if (saip->unaln == FALSE || fill_in == FALSE)
      |        ^
alignmgr2.c: In function ‘AlnMgr2ComputeScoreForSeqAlign’:
alignmgr2.c:8341:17: warning: variable ‘numseqs’ set but not used [-Wunused-but-set-variable]
 8341 |    Int4         numseqs;
      |                 ^~~~~~~
alignmgr2.c:8339:17: warning: variable ‘mismatch’ set but not used [-Wunused-but-set-variable]
 8339 |    Int4         mismatch;
      |                 ^~~~~~~~
alignmgr2.c:8338:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 8338 |    Int4         len;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from alignmgr2.c:242:
alignmgr2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignmgr2.c:3557:13: warning: ‘AlnMgr2AddInNewSA’ defined but not used [-Wunused-function]
 3557 | static void AlnMgr2AddInNewSA(SeqAlignPtr parent, SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~
alignmgr2.c:2368:18: warning: ‘AlnMgr2GetEdgeList’ defined but not used [-Wunused-function]
 2368 | static AMEdgePtr AlnMgr2GetEdgeList(Int4 vertexnum, AMEdgePtr edge_head, AMEdgePtr already_used)
      |                  ^~~~~~~~~~~~~~~~~~
alignmgr2.c:2140:13: warning: ‘AlnMgr2SortVerticesByNumEdges’ defined but not used [-Wunused-function]
 2140 | static void AlnMgr2SortVerticesByNumEdges(AMVertexPtr PNTR vertexarray, Int4 numvertices)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:1061:13: warning: ‘AlnMgr2UnpackSeqAlignChain’ defined but not used [-Wunused-function]
 1061 | static void AlnMgr2UnpackSeqAlignChain(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2IndexLite’:
alignmgr2.c:1001:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1001 |             sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:968:17: note: ‘sap_segs_prev’ was declared here
  968 |    SeqAlignPtr  sap_segs_prev;
      |                 ^~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’:
alignmgr2.c:6122:54: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6122 |             *from = dsp->starts[dsp->dim*i+row-1]+dsp->lens[i];
      |                                                   ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetMaxUnalignedLength’:
alignmgr2.c:7068:23: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7068 |       for (i=0; i<saip->srdp[row]->numunaln && !found; i++)
      |                   ~~~~^~~~~~
alignmgr2.c:7077:19: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7077 |    for (i=0; i<dsp->dim; i++)
      |                ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’:
alignmgr2.c:6353:16: warning: ‘iip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6353 |    iip->strand = strand;
      |    ~~~~~~~~~~~~^~~~~~~~
alignmgr2.c:6182:19: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6182 |       trans = saip->srdp[saip->anchor-1]->sect;
      |               ~~~~^~~~~~
alignmgr2.c:6337:48: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6337 |                iip->starts[k] = dsp->starts[dsp->dim*i + interrupt->row-1];
      |                                             ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthSeqRangeInSA’:
alignmgr2.c:6478:15: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6478 |    srdp = saip->srdp[n-1];
      |           ~~~~^~~~~~
alignmgr2.c:6489:57: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6489 |       beg = dsp->starts[srdp->sect[srdp->numsect-1]*(dsp->dim) + n-1];
      |                                                     ~~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthRowSpanInSA’:
alignmgr2.c:6550:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6550 |       *start = saip->aligncoords[i];
      |                ~~~~^~~~~~~~~~~~~
alignmgr2.c:6558:41: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6558 |       *stop = saip->aligncoords[i] + dsp->lens[srdp->sect[srdp->numsect-1]] - 1;
      |                                      ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLength’:
alignmgr2.c:6789:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6789 |          len += AlnMgr2GetMaxUnalignedLength(salp, i);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:6780:24: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6780 |          lastseg = saip->srdp[saip->anchor-1]->sect[saip->srdp[saip->anchor-1]->numsect-1];
      |                    ~~~~^~~~~~
alignmgr2.c:6788:20: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6788 |          len += dsp->lens[i];
      |                 ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’:
alignmgr2.c:6025:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6025 |    if (saip->anchor <= 0)
      |        ~~~~^~~~~~~~
alignmgr2.c:6017:29: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6017 |          amp->from_row = dsp->starts[trans[stop_sect]*dsp->dim+amp->row_num-1] + endoffset;
      |                          ~~~^~~~~~~~
alignmgr2.c: In function ‘AlnMgr2IsSAPDiscAli’:
alignmgr2.c:6813:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6813 |    if (saip->numunaln > 0)
      |        ~~~~^~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNumAlnBlocks’:
alignmgr2.c:6836:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6836 |    if (saip->numunaln >= 0)
      |        ~~~~^~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthBlockRange’:
alignmgr2.c:6870:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6870 |       *start = saip->aligncoords[saip->unaln[n-1]+1];
      |                ~~~~^~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthUnalignedForNthRow’:
alignmgr2.c:6911:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6911 |    if (saip->numunaln == -1 || unaligned > saip->numunaln)
      |        ~~~~^~~~~~~~~~
alignmgr2.c:6936:65: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6936 |       *start = dsp->starts[(saip->srdp[row-1]->unaligned[i])*dsp->dim+row-1] + dsp->lens[(saip->srdp[row-1]->unaligned[i])];
      |                                                              ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetNextLengthBit’:
alignmgr2.c:7019:26: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7019 |             maxseg = saip->unaln[*seg];
      |                      ~~~~^~~~~~~
alignmgr2.c:7024:26: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7024 |             (*len) += dsp->lens[i];
      |                       ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNumSegsInRange’:
alignmgr2.c:7185:62: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7185 |    start = binary_search_on_uint4_list(aligncoords, from, dsp->numseg);
      |                                                           ~~~^~~~~~~~
alignmgr2.c:6045:15: warning: ‘aligncoords’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6045 |       if (list[mid + 1] <= pos)
      |               ^
alignmgr2.c:7150:21: note: ‘aligncoords’ was declared here
 7150 |    Uint4Ptr         aligncoords;
      |                     ^~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlign’:
alignmgr2.c:7652:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7652 |    if (saip->anchor > 0)
      |        ~~~~^~~~~~~~
alignmgr2.c:7649:51: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7649 |    offset = pos - dsp->starts[(srdp->sect[L])*(dsp->dim)+row-1];
      |                                               ~~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseq’:
alignmgr2.c:7715:67: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7715 |    sect = binary_search_on_uint4_list(saip->aligncoords, pos, saip->numseg);
      |                                                               ~~~~^~~~~~~~
alignmgr2.c:7730:36: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7730 |       return (dsp->starts[sect*(dsp->dim)+row-1] + dsp->lens[sect] - 1 - offset);
      |                                ~~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetSubAlign’:
alignmgr2.c:8036:13: warning: ‘sap_real’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8036 |    if ((a = AlnMgr2FindAnchor(sap_real)) > 0)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2FillInUnaligned’:
alignmgr2.c:9869:12: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9869 |       curr = curr + 1 + offset;
      |       ~~~~~^~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlignStdSeg’:
alignmgr2.c:10175:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10175 |    stop1 = SeqLocStop(slp_longest);
      |            ^~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseqStdSeg’:
alignmgr2.c:10209:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10209 |    stop1 = SeqLocStop(slp_longest);
      |            ^~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLengthStdSeg’:
alignmgr2.c:10236:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10236 |    return (SeqLocLen(slp_longest));
      |           ~^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alnread.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acerdapi.c
acerdapi.c: In function ‘DoesSeqStringMatchBsp’:
acerdapi.c:201:30: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable]
  201 |   Int4 ctr, pos = 0, i, len, seq_len;
      |                              ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from acerdapi.c:40:
acerdapi.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aceread.c
aceread.c:3308:12: warning: ‘s_GetUngappedPosition’ defined but not used [-Wunused-function]
 3308 | static int s_GetUngappedPosition (int gapped_pos, char *seq)
      |            ^~~~~~~~~~~~~~~~~~~~~
aceread.c:276:13: warning: ‘AdjustGapInfoFor3Trim’ defined but not used [-Wunused-function]
  276 | static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len)
      |             ^~~~~~~~~~~~~~~~~~~~~
aceread.c:247:13: warning: ‘AdjustGapInfoFor5Trim’ defined but not used [-Wunused-function]
  247 | static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim)
      |             ^~~~~~~~~~~~~~~~~~~~~
aceread.c:134:12: warning: ‘s_IsGapChar’ defined but not used [-Wunused-function]
  134 | static int s_IsGapChar (char ch, char *gap_chars)
      |            ^~~~~~~~~~~
aceread.c: In function ‘s_ReadContig’:
aceread.c:1477:12: warning: ‘linestring’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1477 |         if (linestring != NULL) free (linestring);
      |            ^
rm -f libncbiobj.a
ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiobj.a ../lib
ranlib ../lib/libncbiobj.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdentrez.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdentrez.c:283:23: warning: ‘CdEntMlSumGet’ declared ‘static’ but never defined [-Wunused-function]
  283 | static DocSumPtr NEAR CdEntMlSumGet PROTO((Int4 uid));
      |                       ^~~~~~~~~~~~~
cdentrez.c:310:23: warning: ‘CdEntSeqSumGet’ declared ‘static’ but never defined [-Wunused-function]
  310 | static DocSumPtr NEAR CdEntSeqSumGet PROTO((Int4 uid, DocType type));
      |                       ^~~~~~~~~~~~~~
cdentrez.c:2935:23: warning: ‘MedSumAsnRead’ defined but not used [-Wunused-function]
 2935 | static DocSumPtr NEAR MedSumAsnRead (AsnIoPtr aip, DocUid uid)
      |                       ^~~~~~~~~~~~~
cdentrez.c:1616:26: warning: ‘FreePostingList’ defined but not used [-Wunused-function]
 1616 | static ByteStorePtr NEAR FreePostingList (ByteStorePtr lst)
      |                          ^~~~~~~~~~~~~~~
cdentrez.c:307:20: warning: ‘BIOSEQ_id_E’ defined but not used [-Wunused-variable]
  307 | static AsnTypePtr  BIOSEQ_id_E = NULL;
      |                    ^~~~~~~~~~~
cdentrez.c: In function ‘CdEntrezMergeTerm’:
cdentrez.c:2675:17: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2675 |           *totl = total;
      |           ~~~~~~^~~~~~~
cdentrez.c:2672:17: warning: ‘special’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2672 |           *spcl = special;
      |           ~~~~~~^~~~~~~~~
cdentrez.c:2640:5: warning: ‘termpage’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2640 |     cd3_CdTermScan (db, fld, termpage, (Int4)0, ScanAndFreeProc);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdLinkUidList’:
cdentrez.c:938:9: warning: ‘count’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  938 |  return count;
      |         ^~~~~
cdentrez.c: In function ‘CdTermListByTerm’:
cdentrez.c:1036:12: warning: ‘first’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1036 |    rsult = cd3_CdTermScan(type,field,first,0,TermListTermScanProc);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
In function ‘strncpy’,
    inlined from ‘FindTermNode’ at cdentrez.c:1813:11,
    inlined from ‘CdEntTLAddTerm’ at cdentrez.c:617:14,
    inlined from ‘CdEntTLAddTerm’ at cdentrez.c:600:24:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdEntTLAddTerm’:
cdentrez.c:1895:24: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1895 |             if (scanOk && total > 0) {
      |                 ~~~~~~~^~~~~~~~~~~~
cdentrez.c:1787:13: note: ‘total’ was declared here
 1787 |   Int4      total;
      |             ^~~~~
cdentrez.c: In function ‘CdEntrezFindTerm’:
cdentrez.c:1123:3: warning: ‘ctp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1123 |   CdTermFree(ctp);
      |   ^~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdEntMedlineEntryListGet’:
cdentrez.c:2720:6: warning: ‘aip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2720 |      cd3_CdDocAsnClose(aip);
      |      ^~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdSeqSumAsnRead’:
cdentrez.c:3424:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3424 |             sprintf (cds, " cds%d", (int) proteins);
      |                                  ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdromlib.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdromlib.c:73:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdnewlib.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdnewlib.c:600:27: warning: missing braces around initializer [-Wmissing-braces]
  600 | struct CdFInfo _finfo[] = {
      |                           ^
  601 |  "", 0, 0,
      |  {       }
  602 |  "hca", MAGIC_hca, FORMAT_hca,
      |  {                           }
  603 |  "sum", MAGIC_sum, FORMAT_sum,
      |  {                           }
  604 |  "lnk", MAGIC_lnk, FORMAT_lnk,
      |  {                           }
  605 |  "ofs", MAGIC_ofs, FORMAT_ofs,
      |  {                           }
  606 |  "oix", MAGIC_oix, FORMAT_oix,
      |  {                           }
  607 |  "trm", MAGIC_trm, FORMAT_trm,
      |  {                           }
  608 |  "tix", MAGIC_tix, FORMAT_tix,
      |  {                           }
  609 |  "pst", MAGIC_pst, FORMAT_pst,
      |  {                           }
  610 |  "inf", MAGIC_inf, FORMAT_inf
      |  {
  611 | };
      | }
cdnewlib.c:614:27: warning: missing braces around initializer [-Wmissing-braces]
  614 | struct CdDirInfo _dir[] = {
      |                           ^
cdnewlib.c: In function ‘cd3_CdDocAsnOpen’:
cdnewlib.c:1327:9: warning: unused variable ‘fdir’ [-Wunused-variable]
 1327 |   char *fdir = NULL;
      |         ^~~~
cdnewlib.c: In function ‘CdDevice_Init’:
cdnewlib.c:2739:6: warning: variable ‘cd_num’ set but not used [-Wunused-but-set-variable]
 2739 |  int cd_num;
      |      ^~~~~~
At top level:
cdnewlib.c:3605:13: warning: ‘Cache_Purge’ defined but not used [-Wunused-function]
 3605 | static void Cache_Purge (Cache *cache)
      |             ^~~~~~~~~~~
cdnewlib.c:3592:14: warning: ‘Cache_Peek’ defined but not used [-Wunused-function]
 3592 | static void* Cache_Peek (Cache *cache, long id)
      |              ^~~~~~~~~~
cdnewlib.c:3569:12: warning: ‘Cache_Touch’ defined but not used [-Wunused-function]
 3569 | static int Cache_Touch (Cache *cache, long id)
      |            ^~~~~~~~~~~
cdnewlib.c:3506:12: warning: ‘Cache_Delete’ defined but not used [-Wunused-function]
 3506 | static int Cache_Delete (Cache *cache, long id)
      |            ^~~~~~~~~~~~
cdnewlib.c:638:18: warning: ‘_div’ defined but not used [-Wunused-variable]
  638 | static DivInfo * _div;
      |                  ^~~~
cdnewlib.c:582:15: warning: ‘_empty_string’ defined but not used [-Wunused-variable]
  582 | static char * _empty_string = "";
      |               ^~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
In function ‘strncat’,
    inlined from ‘CdDevice_FileBuildPath.part.0.isra’ at cdnewlib.c:2679:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-overflow=]
cdnewlib.c: In function ‘UnixFileGets’:
cdnewlib.c:1509:6: warning: ‘ch’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1509 |   if (ch == '\0') {
      |      ^
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdnewlib.c: In function ‘TrmIndex_Lookup’:
cdnewlib.c:2166:12: warning: ‘d’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2166 |  for ( ; d <= 0 && mid >0; --mid)
      |          ~~^~~~
cdnewlib.c:2168:27: warning: ‘term’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2168 |   if (d==0 && len == (int)strlen(term))
      |                           ^~~~~~~~~~~~
cdnewlib.c:2166:28: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2166 |  for ( ; d <= 0 && mid >0; --mid)
      |                            ^~~~~
cdnewlib.c: In function ‘UidIndex_Lookup’:
cdnewlib.c:1986:20: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1986 |  page_num = (uid < *p && mid >0) ? mid-1 : mid;
      |                    ^~
cdnewlib.c:1986:42: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1986 |  page_num = (uid < *p && mid >0) ? mid-1 : mid;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF casn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from casn.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdconfig.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cdconfig.c:75:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/ncbi.h:58,
                 from cdconfig.c:75:
cdconfig.c: In function ‘ChangeMedia’:
../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value]
  247 | #define FALSE ((Nlm_Boolean)0)
      |               ^
../include/ncbifile.h:144:76: note: in expansion of macro ‘FALSE’
  144 | #define EjectCd(sVolume, deviceName, rawDeviceName, mountPoint, mountCmd)  FALSE
      |                                                                            ^~~~~
cdconfig.c:941:29: note: in expansion of macro ‘EjectCd’
  941 |                             EjectCd(toBeEjected->entrez_info->volume_label,
      |                             ^~~~~~~
../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value]
  247 | #define FALSE ((Nlm_Boolean)0)
      |               ^
../include/ncbifile.h:145:76: note: in expansion of macro ‘FALSE’
  145 | #define MountCd(sVolume, deviceName, mountPoint, mountCmd)                 FALSE
      |                                                                            ^~~~~
cdconfig.c:960:17: note: in expansion of macro ‘MountCd’
  960 |                 MountCd(newMedia->entrez_info->volume_label, cdm->device_name,
      |                 ^~~~~~~
cdconfig.c: At top level:
cdconfig.c:191:17: warning: ‘UnMarkLRUineligible’ declared ‘static’ but never defined [-Wunused-function]
  191 | static void     UnMarkLRUineligible       PROTO((void));
      |                 ^~~~~~~~~~~~~~~~~~~
cdconfig.c: In function ‘EntrezInfoMerge’:
cdconfig.c:1257:45: warning: ‘besttype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1257 |                                     besttype->fields[f].num_terms;
      |                                     ~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/cdrom.h:9,
                 from objentr.c:102:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objentr.c: In function ‘CdRomAsnLoad’:
objentr.c:170:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  170 |     if (loaded)
      |     ^~
objentr.c:172:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  172 |         loaded = TRUE;
      |         ^~~~~~
objentr.c: In function ‘DocSumAsnRead’:
objentr.c:970:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  970 |    AsnReadFunc func;
      |                ^~~~
objentr.c:969:12: warning: unused variable ‘isError’ [-Wunused-variable]
  969 |    Boolean isError = FALSE;
      |            ^~~~~~~
At top level:
objentr.c:806:23: warning: ‘EntrezDivInfo_Destruct’ defined but not used [-Wunused-function]
  806 | static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div)
      |                       ^~~~~~~~~~~~~~~~~~~~~~
objentr.c:771:16: warning: ‘EntrezLinkInfo_AsnWrite’ defined but not used [-Wunused-function]
  771 | static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
objentr.c: In function ‘EntrezInfoAsnRead’:
objentr.c:392:4: warning: ‘div’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  392 |    EntrezDivInfo_AsnRead(div++,stream,atp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
objentr.c:763:17: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  763 |  link->datasize = (int) val.intvalue;
      |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
objentr.c:240:18: note: ‘link’ was declared here
  240 |  EntrezLinkInfo *link;
      |                  ^~~~
objentr.c:704:19: warning: ‘fld’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  704 |    fld->post_type = (PostType) val.intvalue;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
objentr.c:239:19: note: ‘fld’ was declared here
  239 |  EntrezFieldInfo *fld;
      |                   ^~~
objentr.c:649:18: warning: ‘tinf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  649 |    tinf->asntype = (char*) val.ptrvalue;
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
objentr.c:238:18: note: ‘tinf’ was declared here
  238 |  EntrezTypeInfo *tinf;
      |                  ^~~~
objentr.c:856:16: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  856 |     div->docs[i++] = val.intvalue;
      |               ~^~
objentr.c:824:7: note: ‘i’ was declared here
  824 |   int i;
      |       ^
rm -f libncbicdr.a
ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicdr.a ../lib
ranlib ../lib/libncbicdr.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibbutns.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibbutns.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibbutns.c: In function ‘Nlm_CheckCallback’:
vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  354 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_RadioCallback’:
vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  373 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_SetButtonStatus’:
vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  694 |   Nlm_Int2         val;
      |                    ^~~
vibbutns.c: In function ‘Nlm_NewButton.constprop’:
vibbutns.c:1159:3: warning: ‘call’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1159 |   XtAddCallback (c, call, Nlm_ButtonCallback, (XtPointer) b);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibextra.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibextra.c:87:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibextra.c: In function ‘Nlm_RGB2HSL.constprop’:
vibextra.c:1219:13: warning: ‘min’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1219 |     i++; if ( i > 2 ) i=0;
      |             ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibfiles.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibfiles.c: In function ‘Nlm_CardToStr’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_IntToStr’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibforms.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibforms.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibgroup.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibgroup.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viblists.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from viblists.c:164:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
viblists.c: In function ‘Nlm_SetListPosition’:
viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable]
 1121 |   Nlm_Boolean is_realized;
      |               ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmenus.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmenus.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmenus.c: In function ‘Nlm_IsMenuItemChecked’:
vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  563 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_CheckMenuItem’:
vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  591 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableMenuItem’:
vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2006 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2005 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoice’:
vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2072 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceGroup’:
vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2122 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceItem’:
vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2166 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2164 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableMenuItem’:
vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2329 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2328 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoice’:
vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2395 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoiceItem’:
vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2489 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2487 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_RemoveSubMenu’:
vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2627 |   Nlm_MenuTool     h;
      |                    ^
vibmenus.c: In function ‘Nlm_CountMenuItems’:
vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3056 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetMenuItem’:
vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3239 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetPopListTitle’:
vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
 3349 |   Nlm_MenU       m;
      |                  ^
vibmenus.c: In function ‘Nlm_AppendItems’:
vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable]
 3978 |   Nlm_Char      accel;
      |                 ^~~~~
vibmenus.c: In function ‘Nlm_NewPopupList’:
vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable]
 4969 |   Widget          lbl;
      |                   ^~~
vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable]
 4967 |   Pixel           color;
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibprmpt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibprmpt.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibsbars.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibsbars.c:135:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibslate.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibslate.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibslate.c: In function ‘Nlm_EnableSlate’:
vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1199 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_DisableSlate’:
vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1254 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_SelectSlate’:
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
 1515 |     XtVaGetValues (h, XmNbackground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
 1517 |     XtVaGetValues (h, XmNforeground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SelectPanel’:
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
 1544 |   XtVaGetValues (h, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
 1546 |   XtVaGetValues (h, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2026 |   Nlm_SlateTool    h;
      |                    ^
vibslate.c: In function ‘Nlm_SlateClickCallback’:
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
 2157 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
 2159 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateInputCallback’:
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
 2313 |       XtVaGetValues(w, XmNbackground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
 2315 |       XtVaGetValues(w, XmNforeground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
 2359 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
 2361 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_ResetPanel’:
vibslate.c:1390:5: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1390 |     rst ((Nlm_PaneL) p);
      |     ^~~~~~~~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_RemoveSlate’:
vibslate.c:1454:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1454 |       rst (p);
      |       ^~~~~~~
vibslate.c:1450:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1450 |       pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                             ^
vibslate.c:1449:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                       ^
vibslate.c:1449:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                 ^
vibslate.c:1449:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                           ^
vibslate.c:1449:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |      ^
vibslate.c: In function ‘Nlm_ResetSlate’:
vibslate.c:1354:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1354 |       rst (p);
      |       ^~~~~~~
vibslate.c:1347:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1347 |       pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                             ^
vibslate.c:1346:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                       ^
vibslate.c:1346:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                 ^
vibslate.c:1346:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                           ^
vibslate.c:1346:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |      ^
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2215:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |          ^
vibslate.c:2202:20: note: ‘pdata.click’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                               ^
vibslate.c:2202:20: note: ‘pdata.drag’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                     ^
vibslate.c:2202:20: note: ‘pdata.hold’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                           ^
vibslate.c:2202:20: note: ‘pdata.release’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2223:11: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2223 |           drw (p);
      |           ^~~~~~~
vibslate.c:560:18: note: ‘pdata.draw’ was declared here
  560 |   Nlm_PanelData  pdata;
      |                  ^~~~~
vibslate.c:2216:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2216 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                                       ^
vibslate.c:2202:20: note: ‘pdata.reset’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2216:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2216 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                 ^
vibslate.c:2202:20: note: ‘pdata.draw’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2048:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |          ^
vibslate.c:2048:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                               ^
vibslate.c:2048:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                     ^
vibslate.c:2048:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                           ^
vibslate.c:2053:12: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2053 |         if (clk != NULL && Nlm_GetEnabled ((Nlm_GraphiC) p)
      |            ^
vibslate.c:2049:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2049 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                 ^
vibslate.c:2049:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2049 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                                       ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibtexts.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibtexts.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibtexts.c: In function ‘Nlm_TextCallback’:
vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable]
 2982 |   XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
      |                        ^~~
vibtexts.c: In function ‘Nlm_LoseFocusCallback’:
vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 2999 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
vibtexts.c: In function ‘Nlm_TabCallback’:
vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3109 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenReturnCallback’:
vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3122 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenActivateCallback’:
vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 3135 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from vibutils.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibwndws.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibwndws.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibwndws.c: In function ‘Nlm_SetColorMap’:
vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 1060 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibwndws.c: In function ‘Nlm_SetWindowTitle’:
vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1567 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_GetWindowTitle’:
vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1610 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_NewWindow’:
vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable]
 2155 |   int             screen_num;
      |                   ^~~~~~~~~~
vibwndws.c: In function ‘Nlm_HideWindow’:
vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2526 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowNormal’:
vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2969 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowModal’:
vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3014 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowDocument’:
vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3060 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_VibMainPrelude’:
vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable]
 6800 |   Nlm_Int2  retval;
      |             ^~~~~~
vibwndws.c: In function ‘Nlm_RemoveDyingWindows’:
vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 6922 |   Nlm_WindowTool   wptr;
      |                    ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmain.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmain.c:40:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  121 | main (int argc, char *argv[])
      | ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidraw.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbidraw.c: In function ‘Nlm_CleanUpDrawingTools’:
ncbidraw.c:7541:5: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7541 |     XFreeFont (Nlm_currentXDisplay, fdata.handle);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawing.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from drawing.c:128:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mapping.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from mapping.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapping.c: In function ‘Nlm_MapRectToWorldBox’:
mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable]
  139 |   Int4 curScale;
      |        ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF picture.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from picture.c:100:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from viewer.c:120:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF document.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from document.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
document.c: In function ‘Nlm_PrintDocument’:
document.c:4419:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4419 |       system (cmmd);
      |       ^~~~~~~~~~~~~
document.c:4423:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4423 |       system (cmmd);
      |       ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF table.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from table.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
table.c: In function ‘TableClick’:
table.c:1017:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1017 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:1017:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1017 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
table.c:1021:13: warning: ‘colRec.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1021 |             actn ((TablE) t, row + 1, column + 1);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
table.c: In function ‘SetTableBlockHilight’:
table.c:843:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  843 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:843:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  843 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
table.c: In function ‘SetTableBlockGray’:
table.c:917:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  917 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:917:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  917 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF palette.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from palette.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF diagnost.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from diagnost.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF image.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from image.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
image.c: In function ‘ShiftXMask’:
image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
  840 |         if(!((mask >> hi + low) & (unsigned long)1)) break;
      |                       ~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pictur3d.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/pictur3d.h:49,
                 from ../include/ppict3d.h:49,
                 from pictur3d.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pictur3d.c: In function ‘Nlm_DeleteFromSeg’:
pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  114 |     else seg->first = b->next;
      |     ^~~~
pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  115 |   if ( seg->last == b ) seg->last = bprev;
      |   ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d1.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d2.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d3.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d4.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d5.c:66:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer3d.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmouse.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibmouse.c:67:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF netscape.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from netscape.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netscape.c: In function ‘NS_Obtain_lock’:
netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable]
  236 |     Bool waited = False;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF imagelst.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/imagelst.h:52,
                 from imagelst.c:61:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF treeview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from treeview.c:91:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF shim3d.c
shim3d.c: In function ‘Nlm_AddHalfWorm3D’:
shim3d.c:3470:46: warning: unused variable ‘tmp’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                              ^~~
shim3d.c:3470:40: warning: unused variable ‘pCz’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                        ^~~
shim3d.c:3470:34: warning: unused variable ‘pCy’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                  ^~~
shim3d.c:3470:28: warning: unused variable ‘pCx’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                            ^~~
shim3d.c:3470:22: warning: unused variable ‘pNz’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                      ^~~
shim3d.c:3470:16: warning: unused variable ‘pNy’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                ^~~
shim3d.c:3470:10: warning: unused variable ‘pNx’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |          ^~~
shim3d.c:3469:47: warning: unused variable ‘Cz’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                               ^~
shim3d.c:3469:42: warning: unused variable ‘Cy’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                          ^~
shim3d.c:3469:37: warning: unused variable ‘Cx’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                     ^~
shim3d.c:3469:32: warning: unused variable ‘Nz’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                ^~
shim3d.c:3469:27: warning: unused variable ‘Ny’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                           ^~
shim3d.c:3469:15: warning: unused variable ‘Nx’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |               ^~
shim3d.c:3468:21: warning: unused variable ‘pi’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |                     ^~
shim3d.c:3468:15: warning: unused variable ‘sinj’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |               ^~~~
shim3d.c:3468:9: warning: unused variable ‘cosj’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |         ^~~~
shim3d.c:3467:33: warning: unused variable ‘prevlen’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                                 ^~~~~~~
shim3d.c:3467:29: warning: unused variable ‘Vz’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                             ^~
shim3d.c:3467:25: warning: unused variable ‘Vy’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                         ^~
shim3d.c:3467:21: warning: unused variable ‘Vx’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                     ^~
shim3d.c:3467:17: warning: unused variable ‘Hz’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                 ^~
shim3d.c:3467:13: warning: unused variable ‘Hy’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |             ^~
shim3d.c:3467:9: warning: unused variable ‘Hx’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |         ^~
shim3d.c:3466:21: warning: unused variable ‘dQtz’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |                     ^~~~
shim3d.c:3466:15: warning: unused variable ‘dQty’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |               ^~~~
shim3d.c:3466:9: warning: unused variable ‘dQtx’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |         ^~~~
shim3d.c:3464:14: warning: unused variable ‘len’ [-Wunused-variable]
 3464 |     GLdouble len, R1x, R1y, R1z, R2x, R2y, R2z, MG[4][3],
      |              ^~~
shim3d.c:3463:26: warning: unused variable ‘offset’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                          ^~~~~~
shim3d.c:3463:23: warning: unused variable ‘m’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                       ^
shim3d.c:3463:20: warning: unused variable ‘k’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                    ^
shim3d.c:3463:17: warning: unused variable ‘j’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                 ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF odlbox.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from odlbox.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
odlbox.c: In function ‘LB_onVScroll’:
odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable]
  424 | Boolean    IsGoUp=FALSE;
      |            ^~~~~~
rm -f libvibrant.a
ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibrant.a ../lib
ranlib ../lib/libvibrant.a
mv vibbutns.o vibbutns.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibbutns.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibbutns.c: In function ‘Nlm_CheckCallback’:
vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  354 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_RadioCallback’:
vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  373 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_SetButtonStatus’:
vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  694 |   Nlm_Int2         val;
      |                    ^~~
vibbutns.c: In function ‘Nlm_NewButton.constprop’:
vibbutns.c:1159:3: warning: ‘call’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1159 |   XtAddCallback (c, call, Nlm_ButtonCallback, (XtPointer) b);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv vibbutns.o vibbutns.glo
mv vibbutns.tmp vibbutns.o
mv vibextra.o vibextra.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibextra.c:87:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibextra.c: In function ‘Nlm_RGB2HSL.constprop’:
vibextra.c:1219:13: warning: ‘min’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1219 |     i++; if ( i > 2 ) i=0;
      |             ^
mv vibextra.o vibextra.glo
mv vibextra.tmp vibextra.o
mv vibfiles.o vibfiles.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibfiles.c: In function ‘Nlm_CardToStr’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_IntToStr’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv vibfiles.o vibfiles.glo
mv vibfiles.tmp vibfiles.o
mv vibforms.o vibforms.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibforms.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibforms.o vibforms.glo
mv vibforms.tmp vibforms.o
mv vibgroup.o vibgroup.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibgroup.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibgroup.o vibgroup.glo
mv vibgroup.tmp vibgroup.o
mv viblists.o viblists.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from viblists.c:164:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
viblists.c: In function ‘Nlm_SetListPosition’:
viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable]
 1121 |   Nlm_Boolean is_realized;
      |               ^~~~~~~~~~~
mv viblists.o viblists.glo
mv viblists.tmp viblists.o
mv vibmenus.o vibmenus.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmenus.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmenus.c: In function ‘Nlm_IsMenuItemChecked’:
vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  563 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_CheckMenuItem’:
vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  591 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableMenuItem’:
vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2006 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2005 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoice’:
vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2072 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceGroup’:
vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2122 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceItem’:
vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2166 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2164 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableMenuItem’:
vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2329 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2328 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoice’:
vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2395 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoiceItem’:
vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2489 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2487 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_RemoveSubMenu’:
vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2627 |   Nlm_MenuTool     h;
      |                    ^
vibmenus.c: In function ‘Nlm_CountMenuItems’:
vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3056 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetMenuItem’:
vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3239 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetPopListTitle’:
vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
 3349 |   Nlm_MenU       m;
      |                  ^
vibmenus.c: In function ‘Nlm_AppendItems’:
vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable]
 3978 |   Nlm_Char      accel;
      |                 ^~~~~
vibmenus.c: In function ‘Nlm_NewPopupList’:
vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable]
 4969 |   Widget          lbl;
      |                   ^~~
vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable]
 4967 |   Pixel           color;
      |                   ^~~~~
mv vibmenus.o vibmenus.glo
mv vibmenus.tmp vibmenus.o
mv vibprmpt.o vibprmpt.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibprmpt.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibprmpt.o vibprmpt.glo
mv vibprmpt.tmp vibprmpt.o
mv vibsbars.o vibsbars.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibsbars.c:135:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibsbars.o vibsbars.glo
mv vibsbars.tmp vibsbars.o
mv vibslate.o vibslate.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibslate.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibslate.c: In function ‘Nlm_EnableSlate’:
vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1199 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_DisableSlate’:
vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1254 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_SelectSlate’:
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
 1515 |     XtVaGetValues (h, XmNbackground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
 1517 |     XtVaGetValues (h, XmNforeground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SelectPanel’:
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
 1544 |   XtVaGetValues (h, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
 1546 |   XtVaGetValues (h, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2026 |   Nlm_SlateTool    h;
      |                    ^
vibslate.c: In function ‘Nlm_SlateClickCallback’:
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
 2157 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
 2159 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateInputCallback’:
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
 2313 |       XtVaGetValues(w, XmNbackground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
 2315 |       XtVaGetValues(w, XmNforeground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
 2359 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
 2361 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_Set3DColorMap’:
vibslate.c:2686:17: warning: unused variable ‘testvisual’ [-Wunused-variable]
 2686 |         Boolean testvisual;
      |                 ^~~~~~~~~~
vibslate.c:2685:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 2685 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibslate.c: In function ‘Nlm_ResetPanel’:
vibslate.c:1390:5: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1390 |     rst ((Nlm_PaneL) p);
      |     ^~~~~~~~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_RemoveSlate’:
vibslate.c:1454:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1454 |       rst (p);
      |       ^~~~~~~
vibslate.c:1450:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1450 |       pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                             ^
vibslate.c:1449:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                       ^
vibslate.c:1449:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                 ^
vibslate.c:1449:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                           ^
vibslate.c:1449:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |      ^
vibslate.c: In function ‘Nlm_ResetSlate’:
vibslate.c:1354:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1354 |       rst (p);
      |       ^~~~~~~
vibslate.c:1347:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1347 |       pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                             ^
vibslate.c:1346:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                       ^
vibslate.c:1346:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                 ^
vibslate.c:1346:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                           ^
vibslate.c:1346:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |      ^
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2215:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |          ^
vibslate.c:2202:20: note: ‘pdata.click’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                               ^
vibslate.c:2202:20: note: ‘pdata.drag’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                     ^
vibslate.c:2202:20: note: ‘pdata.hold’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                           ^
vibslate.c:2202:20: note: ‘pdata.release’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2223:11: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2223 |           drw (p);
      |           ^~~~~~~
vibslate.c:560:18: note: ‘pdata.draw’ was declared here
  560 |   Nlm_PanelData  pdata;
      |                  ^~~~~
vibslate.c:2216:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2216 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                                       ^
vibslate.c:2202:20: note: ‘pdata.reset’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2216:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2216 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                 ^
vibslate.c:2202:20: note: ‘pdata.draw’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2048:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |          ^
vibslate.c:2048:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                               ^
vibslate.c:2048:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                     ^
vibslate.c:2048:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                           ^
vibslate.c:2053:12: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2053 |         if (clk != NULL && Nlm_GetEnabled ((Nlm_GraphiC) p)
      |            ^
vibslate.c:2049:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2049 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                 ^
vibslate.c:2049:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2049 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                                       ^
mv vibslate.o vibslate.glo
mv vibslate.tmp vibslate.o
mv vibtexts.o vibtexts.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibtexts.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibtexts.c: In function ‘Nlm_TextCallback’:
vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable]
 2982 |   XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
      |                        ^~~
vibtexts.c: In function ‘Nlm_LoseFocusCallback’:
vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 2999 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
vibtexts.c: In function ‘Nlm_TabCallback’:
vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3109 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenReturnCallback’:
vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3122 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenActivateCallback’:
vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 3135 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
mv vibtexts.o vibtexts.glo
mv vibtexts.tmp vibtexts.o
mv vibutils.o vibutils.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from vibutils.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibutils.o vibutils.glo
mv vibutils.tmp vibutils.o
mv vibwndws.o vibwndws.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibwndws.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibwndws.c: In function ‘Nlm_SetColorMap’:
vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 1060 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibwndws.c: In function ‘Nlm_SetWindowTitle’:
vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1567 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_GetWindowTitle’:
vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1610 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_NewWindow’:
vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable]
 2155 |   int             screen_num;
      |                   ^~~~~~~~~~
vibwndws.c: In function ‘Nlm_HideWindow’:
vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2526 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowNormal’:
vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2969 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowModal’:
vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3014 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowDocument’:
vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3060 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_VibMainPrelude’:
vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable]
 6800 |   Nlm_Int2  retval;
      |             ^~~~~~
vibwndws.c: In function ‘Nlm_RemoveDyingWindows’:
vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 6922 |   Nlm_WindowTool   wptr;
      |                    ^~~~
At top level:
vibwndws.c:1318:16: warning: ‘Nlm_StandardColormap’ defined but not used [-Wunused-function]
 1318 | static Boolean Nlm_StandardColormap(Colormap *cMap,
      |                ^~~~~~~~~~~~~~~~~~~~
mv vibwndws.o vibwndws.glo
mv vibwndws.tmp vibwndws.o
mv vibmain.o vibmain.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmain.c:40:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  121 | main (int argc, char *argv[])
      | ^~~~
mv vibmain.o vibmain.glo
mv vibmain.tmp vibmain.o
mv ncbidraw.o ncbidraw.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidraw.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbidraw.c: In function ‘Nlm_CleanUpDrawingTools’:
ncbidraw.c:7541:5: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7541 |     XFreeFont (Nlm_currentXDisplay, fdata.handle);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv ncbidraw.o ncbidraw.glo
mv ncbidraw.tmp ncbidraw.o
mv drawing.o drawing.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from drawing.c:128:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv drawing.o drawing.glo
mv drawing.tmp drawing.o
mv mapping.o mapping.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from mapping.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapping.c: In function ‘Nlm_MapRectToWorldBox’:
mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable]
  139 |   Int4 curScale;
      |        ^~~~~~~~
mv mapping.o mapping.glo
mv mapping.tmp mapping.o
mv picture.o picture.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from picture.c:100:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv picture.o picture.glo
mv picture.tmp picture.o
mv viewer.o viewer.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from viewer.c:120:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv viewer.o viewer.glo
mv viewer.tmp viewer.o
mv document.o document.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from document.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
document.c: In function ‘Nlm_PrintDocument’:
document.c:4419:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4419 |       system (cmmd);
      |       ^~~~~~~~~~~~~
document.c:4423:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4423 |       system (cmmd);
      |       ^~~~~~~~~~~~~
mv document.o document.glo
mv document.tmp document.o
mv table.o table.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from table.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
table.c: In function ‘TableClick’:
table.c:1017:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1017 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:1017:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1017 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
table.c:1021:13: warning: ‘colRec.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1021 |             actn ((TablE) t, row + 1, column + 1);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
table.c: In function ‘SetTableBlockHilight’:
table.c:843:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  843 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:843:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  843 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
table.c: In function ‘SetTableBlockGray’:
table.c:917:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  917 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:917:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  917 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
mv table.o table.glo
mv table.tmp table.o
mv palette.o palette.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from palette.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv palette.o palette.glo
mv palette.tmp palette.o
mv diagnost.o diagnost.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from diagnost.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv diagnost.o diagnost.glo
mv diagnost.tmp diagnost.o
mv image.o image.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from image.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
image.c: In function ‘ShiftXMask’:
image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
  840 |         if(!((mask >> hi + low) & (unsigned long)1)) break;
      |                       ~~~^~~~~
mv image.o image.glo
mv image.tmp image.o
mv pictur3d.o pictur3d.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/pictur3d.h:49,
                 from ../include/ppict3d.h:49,
                 from pictur3d.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pictur3d.c: In function ‘Nlm_DeleteFromSeg’:
pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  114 |     else seg->first = b->next;
      |     ^~~~
pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  115 |   if ( seg->last == b ) seg->last = bprev;
      |   ^~
mv pictur3d.o pictur3d.glo
mv pictur3d.tmp pictur3d.o
mv prim3d1.o prim3d1.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d1.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d1.o prim3d1.glo
mv prim3d1.tmp prim3d1.o
mv prim3d2.o prim3d2.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d2.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d2.o prim3d2.glo
mv prim3d2.tmp prim3d2.o
mv prim3d3.o prim3d3.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d3.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d3.o prim3d3.glo
mv prim3d3.tmp prim3d3.o
mv prim3d4.o prim3d4.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d4.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d4.o prim3d4.glo
mv prim3d4.tmp prim3d4.o
mv prim3d5.o prim3d5.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d5.c:66:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d5.o prim3d5.glo
mv prim3d5.tmp prim3d5.o
mv viewer3d.o viewer3d.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c
mv viewer3d.o viewer3d.glo
mv viewer3d.tmp viewer3d.o
mv vibmouse.o vibmouse.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibmouse.c:67:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibmouse.o vibmouse.glo
mv vibmouse.tmp vibmouse.o
mv netscape.o netscape.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from netscape.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netscape.c: In function ‘NS_Obtain_lock’:
netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable]
  236 |     Bool waited = False;
      |          ^~~~~~
mv netscape.o netscape.glo
mv netscape.tmp netscape.o
mv imagelst.o imagelst.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/imagelst.h:52,
                 from imagelst.c:61:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv imagelst.o imagelst.glo
mv imagelst.tmp imagelst.o
mv treeview.o treeview.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from treeview.c:91:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv treeview.o treeview.glo
mv treeview.tmp treeview.o
mv shim3d.o shim3d.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c
shim3d.c: In function ‘OGL_AddCylinder3D’:
shim3d.c:918:14: warning: unused variable ‘iCount’ [-Wunused-variable]
  918 |     Nlm_Int4 iCount;
      |              ^~~~~~
shim3d.c: In function ‘OGL_AddText3D’:
shim3d.c:1210:22: warning: unused variable ‘i’ [-Wunused-variable]
 1210 |     Nlm_Int4 Length, i;
      |                      ^
shim3d.c: In function ‘OGL_Zoom_DragMA’:
shim3d.c:1770:16: warning: unused variable ‘OGL_Data’ [-Wunused-variable]
 1770 |     TOGL_Data *OGL_Data = MAToOGL(ma);
      |                ^~~~~~~~
shim3d.c: In function ‘OGL_Hit’:
shim3d.c:2065:37: warning: left shift count >= width of type [-Wshift-count-overflow]
 2065 |                 ZMinName = ZMinName << (sizeof(GLuint) * 8);
      |                                     ^~
shim3d.c: In function ‘write_row_callback’:
shim3d.c:2923:48: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2923 |             (((float) row) / (-nRows)) * ((end - start) / 15)
      |                                           ~~~~~^~~~~~~~
shim3d.c:2923:48: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from shim3d.c:331:
In function ‘strncpy’,
    inlined from ‘Nlm_FindAvailableFonts’ at shim3d.c:2234:9:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
shim3d.c: In function ‘SetOGLFont’:
shim3d.c:2381:64: warning: ‘closest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2381 |             fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]);
      |                                                                ^
shim3d.c:2376:37: warning: ‘mindiff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2376 |                 if (ii == 0 || diff < mindiff) {
      |                                ~~~~~^~~~~~~~~
shim3d.c:2381:64: warning: ‘list’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2381 |             fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]);
      |                                                                ^
shim3d.c: In function ‘Nlm_AddHalfWorm3D’:
shim3d.c:3463:26: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                          ^~~~~~
mv shim3d.o shim3d.glo
mv shim3d.tmp shim3d.o
mv odlbox.o odlbox.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from odlbox.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
odlbox.c: In function ‘LB_onVScroll’:
odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable]
  424 | Boolean    IsGoUp=FALSE;
      |            ^~~~~~
mv odlbox.o odlbox.glo
mv odlbox.tmp odlbox.o
rm -f libvibrantOGL.a
ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibrantOGL.a ../lib
ranlib ../lib/libvibrantOGL.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accentr.c:297:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
accentr.c: In function ‘EntrezBiostrucGet’:
accentr.c:2113:17: warning: unused variable ‘retval’ [-Wunused-variable]
 2113 |     BiostrucPtr retval = NULL;
      |                 ^~~~~~
accentr.c: In function ‘EntrezGIForSeqIdFunc’:
accentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
accentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from ../include/accutils.h:119,
                 from accutils.c:149:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from ../include/accutils.h:119,
                 from accutils.c:149:
In function ‘strncpy’,
    inlined from ‘EntrezFieldToString’ at accutils.c:691:13:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbiacc.a
ar cru libncbiacc.a accentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiacc.a ../lib
ranlib ../lib/libncbiacc.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from drawseq.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
drawseq.c: In function ‘AddFlatNodeSymbol’:
drawseq.c:811:7: warning: unused variable ‘symbol_height’ [-Wunused-variable]
  811 |  Int4 symbol_height = 8;
      |       ^~~~~~~~~~~~~
drawseq.c: In function ‘AddAlignBlocks’:
drawseq.c:970:7: warning: variable ‘c_num’ set but not used [-Wunused-but-set-variable]
  970 |  Int2 c_num;
      |       ^~~~~
drawseq.c: In function ‘AddAlignFeature’:
drawseq.c:1369:8: warning: unused variable ‘ptype’ [-Wunused-variable]
 1369 |  Uint1 ptype = 0;
      |        ^~~~~
drawseq.c: In function ‘AddAlignmentMismatch’:
drawseq.c:1523:7: warning: variable ‘i_right’ set but not used [-Wunused-but-set-variable]
 1523 |  Int4 i_right;
      |       ^~~~~~~
drawseq.c: In function ‘DrawRestrictionMap’:
drawseq.c:1811:10: warning: unused variable ‘retval’ [-Wunused-variable]
 1811 |  Boolean retval = FALSE;
      |          ^~~~~~
drawseq.c:1802:15: warning: variable ‘center’ set but not used [-Wunused-but-set-variable]
 1802 |  Int4 x1, x2, center;
      |               ^~~~~~
drawseq.c: In function ‘DrawFeatures’:
drawseq.c:2563:7: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 2563 |  Int2 entityID;
      |       ^~~~~~~~
drawseq.c: In function ‘DrawOneSeqLoc’:
drawseq.c:3020:10: warning: variable ‘show_seq_label’ set but not used [-Wunused-but-set-variable]
 3020 |  Boolean show_seq_label = TRUE; /*show the label of a sequence*/
      |          ^~~~~~~~~~~~~~
drawseq.c:3009:10: warning: variable ‘ends’ set but not used [-Wunused-but-set-variable]
 3009 |  Boolean ends;
      |          ^~~~
drawseq.c: In function ‘Label_GData’:
drawseq.c:3439:10: warning: variable ‘success’ set but not used [-Wunused-but-set-variable]
 3439 |  Boolean success = FALSE;
      |          ^~~~~~~
drawseq.c: In function ‘DrawEquivAlign’:
drawseq.c:3594:8: warning: unused variable ‘my_gray_color’ [-Wunused-variable]
 3594 |  Uint1 my_gray_color[]={63, 63, 63};
      |        ^~~~~~~~~~~~~
drawseq.c: In function ‘load_align_label_rectangle’:
drawseq.c:4352:10: warning: variable ‘found_it’ set but not used [-Wunused-but-set-variable]
 4352 |  Boolean found_it;
      |          ^~~~~~~~
drawseq.c: In function ‘PicForAlignNode’:
drawseq.c:4558:18: warning: variable ‘min_scale’ set but not used [-Wunused-but-set-variable]
 4558 |  Int4 max_width, min_scale;
      |                  ^~~~~~~~~
At top level:
drawseq.c:3525:22: warning: ‘get_ith_arp’ defined but not used [-Wunused-function]
 3525 | static AlignRangePtr get_ith_arp(AlignRangePtr arp, Int2 i)
      |                      ^~~~~~~~~~~
drawseq.c:3511:18: warning: ‘get_map_pos’ defined but not used [-Wunused-function]
 3511 | static MapPosPtr get_map_pos(MapLayoutPtr mlp, SeqIdPtr sip)
      |                  ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotmatrx.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dotmatrx.h:47,
                 from dotmatrx.c:32:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fea2seg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from fea2seg.c:74:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fstyle.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from fstyle.c:55:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg1.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg2.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smdlg2.c: In function ‘Nlm_CreateDlgGroup’:
smdlg2.c:631:12: warning: variable ‘toAlign’ set but not used [-Wunused-but-set-variable]
  631 |   Handle   toAlign[3];
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg3.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smdlg3.c: In function ‘FeatureExtraDraw’:
smdlg3.c:508:17: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  508 |       p1.y = (y0+y1)/2; p2.y = y0;
      |              ~~~^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smtools.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smtools.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smtools.c: In function ‘Nlm_CtreateToolsSM’:
smtools.c:534:30: warning: ‘%s’ directive writing up to 227 bytes into a region of size 32 [-Wformat-overflow=]
  534 |     sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size );
      |                              ^~
smtools.c:534:29: note: directive argument in the range [-32768, 32767]
  534 |     sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size );
      |                             ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smtools.c:48:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 235 bytes into a destination of size 32
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF styleman.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from styleman.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF stylemui.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from stylemui.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF glbpic.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from glbpic.c:22:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
glbpic.c: In function ‘label_linear_mark’:
glbpic.c:1295:7: warning: unused variable ‘tick_len’ [-Wunused-variable]
 1295 |  Int4 tick_len = TICK_LEN;
      |       ^~~~~~~~
glbpic.c: In function ‘add_alignment_to_global’:
glbpic.c:1552:8: warning: variable ‘p_val’ set but not used [-Wunused-but-set-variable]
 1552 |  Uint1 p_val;
      |        ^~~~~
At top level:
glbpic.c:1748:16: warning: ‘get_print_score’ defined but not used [-Wunused-function]
 1748 | static Boolean get_print_score(FloatHi min_score, FloatHi max_score, CharPtr label, Uint1 status)
      |                ^~~~~~~~~~~~~~~
glbpic.c:584:19: warning: ‘extract_align_range’ defined but not used [-Wunused-function]
  584 | static ValNodePtr extract_align_range(ValNodePtr PNTR arp_list, Uint1 displayOrder)
      |                   ^~~~~~~~~~~~~~~~~~~
glbpic.c: In function ‘get_circle_label_align’:
glbpic.c:2349:9: warning: ‘align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2349 |  return align;
      |         ^~~~~
glbpic.c: In function ‘label_circle_mark.isra’:
glbpic.c:2474:26: warning: ‘first_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2474 |        if(ABS(first_left - left) < (t_width +3))
      |                          ^
glbpic.c:2473:24: warning: ‘first_top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2473 |       if(ABS(first_top - top )< (font_height+3))
      |                        ^
glbpic.c:2417:30: warning: ‘first_align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2417 |  Uint1 label_align, p_align, first_align;
      |                              ^~~~~~~~~~~
glbpic.c:2469:28: warning: ‘first_width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2469 |     t_width = (first_width + width)/2;
      |               ~~~~~~~~~~~~~^~~~~~~~
glbpic.c:2417:21: warning: ‘p_align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2417 |  Uint1 label_align, p_align, first_align;
      |                     ^~~~~~~
In file included from ../include/glbpic.h:7,
                 from glbpic.c:23:
glbpic.c: In function ‘add_alignment_to_global’:
../include/picture.h:520:22: warning: ‘g_top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  520 | #define AddTextLabel Nlm_AddTextLabel
      |                      ^~~~~~~~~~~~~~~~
glbpic.c:1560:7: note: ‘g_top’ was declared here
 1560 |  Int4 g_top, g_bottom;
      |       ^~~~~
glbpic.c: In function ‘Draw_Global’:
glbpic.c:2177:12: warning: ‘seglen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2177 |     m_stop += seglen;
      |     ~~~~~~~^~~~~~~~~
glbpic.c:1943:8: note: ‘seglen’ was declared here
 1943 |   Int4 seglen;
      |        ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF layout.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/layout.h:3,
                 from layout.c:2:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
layout.c: In function ‘LayoutNodeFlat’:
layout.c:326:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
  326 |  ValNodePtr vnp, next, prev;
      |                        ^~~~
layout.c: In function ‘layout_uncompressed_group’:
layout.c:1244:20: warning: variable ‘group_stop’ set but not used [-Wunused-but-set-variable]
 1244 |  Int2 group_start, group_stop;
      |                    ^~~~~~~~~~
layout.c: In function ‘LayoutFeatNode’:
layout.c:1365:17: warning: variable ‘y_next’ set but not used [-Wunused-but-set-variable]
 1365 |  Int4 cur_line, y_next;
      |                 ^~~~~~
layout.c:1364:17: warning: variable ‘labelstyle’ set but not used [-Wunused-but-set-variable]
 1364 |  Int4 segstyle, labelstyle;
      |                 ^~~~~~~~~~
layout.c:1363:10: warning: variable ‘show_trunc’ set but not used [-Wunused-but-set-variable]
 1363 |  Boolean show_trunc = FALSE;
      |          ^~~~~~~~~~
layout.c:1350:10: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
 1350 |  Int2 i, k;
      |          ^
layout.c: In function ‘LayoutAlignNode’:
layout.c:2208:7: warning: unused variable ‘num’ [-Wunused-variable]
 2208 |  Int4 num = 0;
      |       ^~~
At top level:
layout.c:1779:16: warning: ‘modify_master_line’ defined but not used [-Wunused-function]
 1779 | static Boolean modify_master_line(ValNodePtr vnp, Int4Ptr m_left, Int4Ptr m_right, Int4 maxScale, Uint1 label_align)
      |                ^~~~~~~~~~~~~~~~~~
layout.c: In function ‘GroupFeatNode’:
layout.c:636:14: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  636 |   prev->next = new;
      |   ~~~~~~~~~~~^~~~~
layout.c:594:35: note: ‘prev’ was declared here
  594 |  ValNodePtr my_node = NULL, curr, prev, next;
      |                                   ^~~~
layout.c: In function ‘OrderCdsmRNA’:
layout.c:969:14: warning: ‘m_missed’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  969 |       else if(missed == m_missed && m_offset > offset)
      |              ^
layout.c:940:15: note: ‘m_missed’ was declared here
  940 |  Int2 missed, m_missed; /*number of exons missed at both end*/
      |               ^~~~~~~~
layout.c: In function ‘LayoutFeatNode’:
layout.c:1503:12: warning: ‘p_right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1503 |    p_right = MAX(right, p_right);
layout.c:1502:11: warning: ‘p_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1502 |    p_left = MIN(left, p_left);
layout.c:1504:14: warning: ‘height’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1504 |    maxHeight = MAX(height, maxHeight);
layout.c: In function ‘LayoutAlignNode’:
layout.c:2215:17: warning: ‘next_line’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |  Int4 cur_line, next_line;
      |                 ^~~~~~~~~
layout.c:2251:7: warning: ‘next’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2251 |   i = find_align_line_number(anp, vnp->next,
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2252 |    label_align, &next, &line_status_list, m_right, maxScale);
      |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saldist.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/saldist.h:48,
                 from saldist.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
saldist.c: In function ‘AAcode’:
saldist.c:1003:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1003 |   if (car=='A') return(1);  if (car=='B') return(2);
      |   ^~
saldist.c:1003:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1003 |   if (car=='A') return(1);  if (car=='B') return(2);
      |                             ^~
saldist.c:1004:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1004 |   if (car=='C') return(3);  if (car=='D') return(4);
      |   ^~
saldist.c:1004:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1004 |   if (car=='C') return(3);  if (car=='D') return(4);
      |                             ^~
saldist.c:1005:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1005 |   if (car=='E') return(5);  if (car=='F') return(6);
      |   ^~
saldist.c:1005:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1005 |   if (car=='E') return(5);  if (car=='F') return(6);
      |                             ^~
saldist.c:1006:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1006 |   if (car=='G') return(7);  if (car=='H') return(8);
      |   ^~
saldist.c:1006:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1006 |   if (car=='G') return(7);  if (car=='H') return(8);
      |                             ^~
saldist.c:1007:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1007 |   if (car=='I') return(9);  if (car=='K') return(10);
      |   ^~
saldist.c:1007:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1007 |   if (car=='I') return(9);  if (car=='K') return(10);
      |                             ^~
saldist.c:1008:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1008 |   if (car=='L') return(11); if (car=='M') return(12);
      |   ^~
saldist.c:1008:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1008 |   if (car=='L') return(11); if (car=='M') return(12);
      |                             ^~
saldist.c:1009:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1009 |   if (car=='N') return(13); if (car=='P') return(14);
      |   ^~
saldist.c:1009:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1009 |   if (car=='N') return(13); if (car=='P') return(14);
      |                             ^~
saldist.c:1010:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1010 |   if (car=='Q') return(15); if (car=='R') return(16);
      |   ^~
saldist.c:1010:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1010 |   if (car=='Q') return(15); if (car=='R') return(16);
      |                             ^~
saldist.c:1011:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1011 |   if (car=='S') return(17); if (car=='T') return(18);
      |   ^~
saldist.c:1011:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1011 |   if (car=='S') return(17); if (car=='T') return(18);
      |                             ^~
saldist.c:1012:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1012 |   if (car=='V') return(19); if (car=='W') return(20);
      |   ^~
saldist.c:1012:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1012 |   if (car=='V') return(19); if (car=='W') return(20);
      |                             ^~
saldist.c:1013:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1013 |   if (car=='X') return(21); if (car=='Y') return(22);
      |   ^~
saldist.c:1013:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1013 |   if (car=='X') return(21); if (car=='Y') return(22);
      |                             ^~
saldist.c:1014:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1014 |   if (car=='Z') return(23); if (car=='U') return(24);
      |   ^~
saldist.c:1014:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1014 |   if (car=='Z') return(23); if (car=='U') return(24);
      |                             ^~
saldist.c: In function ‘copy_string’:
saldist.c:1289:12: warning: value computed is not used [-Wunused-value]
 1289 |            *from++;
      |            ^~~~~~~
saldist.c:1302:11: warning: value computed is not used [-Wunused-value]
 1302 |           *from++;
      |           ^~~~~~~
saldist.c: In function ‘nss_ref_complength’:
saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1479 |              if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                 ^
saldist.c:1455:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1455 |            c1, c2;
      |                ^~
saldist.c:1455:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1455 |            c1, c2;
      |            ^~
saldist.c: In function ‘nss_pw_complength’:
saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1572 |               if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                  ^
saldist.c:1547:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1547 |            c1, c2;
      |                ^~
saldist.c:1547:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1547 |            c1, c2;
      |            ^~
saldist.c: In function ‘nss_gp_complength’:
saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1675 |                  if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                     ^
saldist.c:1640:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1640 |            c1, c2;
      |                ^~
saldist.c:1640:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1640 |            c1, c2;
      |            ^~
saldist.c: In function ‘SortbySimProc’:
saldist.c:2139:31: warning: variable ‘newsalpd’ set but not used [-Wunused-but-set-variable]
 2139 |   SeqAlignPtr        newsalp, newsalpd;
      |                               ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from saldist.c:49:
saldist.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
saldist.c:1853:22: warning: ‘scangp_calcul’ defined but not used [-Wunused-function]
 1853 | static Int4Ptr PNTR  scangp_calcul (EditAlignDataPtr adp, Int2 seq1, Int2 seq2, Int4 from, Int4 to, Int2 group, Int2 choice, Int2 win_width)
      |                      ^~~~~~~~~~~~~
saldist.c:1080:24: warning: ‘FloatLomatrix’ defined but not used [-Wunused-function]
 1080 | static FloatLoPtr PNTR FloatLomatrix (Int2 nrows, Int2 ncol)
      |                        ^~~~~~~~~~~~~
saldist.c:999:13: warning: ‘AAcode’ defined but not used [-Wunused-function]
  999 | static Int2 AAcode(Char car)
      |             ^~~~~~
saldist.c:928:16: warning: ‘new_matrice’ defined but not used [-Wunused-function]
  928 | static Boolean new_matrice (Int2 simmatrix, CharPtr path)
      |                ^~~~~~~~~~~
saldist.c:910:14: warning: ‘matrixlst’ defined but not used [-Wunused-variable]
  910 | static Char *matrixlst [] = {"", "idmat",
      |              ^~~~~~~~~
saldist.c: In function ‘writematrixhalf.constprop’:
saldist.c:1225:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1225 |               vnp=vnp->next;
      |               ~~~^~~~~~~~~~
saldist.c: In function ‘PwDistProc’:
saldist.c:1151:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1151 |               vnp=vnp->next;
      |               ~~~^~~~~~~~~~
saldist.c:1104:19: note: ‘vnp’ was declared here
 1104 |   ValNodePtr      vnp,
      |                   ^~~
saldist.c: In function ‘SortbyLenItem’:
saldist.c:2191:14: warning: ‘mink’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2191 |      sortlst [mink] = j + 1;
      |              ^
saldist.c:2172:28: note: ‘mink’ was declared here
 2172 |   Int2               j, k, mink;
      |                            ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saled.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from saled.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
saled.c: In function ‘ReadAlignmentForSeqEntry’:
saled.c:3310:21: warning: unused variable ‘dirty’ [-Wunused-variable]
 3310 |                     dirty = FALSE;
      |                     ^~~~~
saled.c:3306:21: warning: unused variable ‘salp’ [-Wunused-variable]
 3306 |   SeqAlignPtr       salp=NULL,
      |                     ^~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from saled.c:49:
saled.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from saled.c:55:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salfiles.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from ../include/salfiles.h:48,
                 from salfiles.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salfiles.c: In function ‘NewFastaRead’:
salfiles.c:315:30: warning: variable ‘lastsegsip’ set but not used [-Wunused-but-set-variable]
  315 |   SeqIdPtr      segsip=NULL, lastsegsip=NULL;
      |                              ^~~~~~~~~~
salfiles.c: In function ‘ReadAlignmentToStrings’:
salfiles.c:664:16: warning: unused variable ‘nseq’ [-Wunused-variable]
  664 |   Int2         nseq = 0;
      |                ^~~~
salfiles.c: In function ‘MacawRead’:
salfiles.c:1257:15: warning: unused variable ‘vnp’ [-Wunused-variable]
 1257 |               vnp = NULL;
      |               ^~~
salfiles.c: In function ‘ReadLocalAlign’:
salfiles.c:1444:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1444 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1444:22: note: did you mean to dereference the pointer?
 1444 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1446:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1446 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1446:19: note: did you mean to dereference the pointer?
 1446 |               if (tmp!='\0')
      |                   ^
salfiles.c:1455:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1455 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1455:22: note: did you mean to dereference the pointer?
 1455 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1457:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1457 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1457:19: note: did you mean to dereference the pointer?
 1457 |               if (tmp!='\0')
      |                   ^
salfiles.c:1536:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1536 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1536:22: note: did you mean to dereference the pointer?
 1536 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1538:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1538 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1538:19: note: did you mean to dereference the pointer?
 1538 |               if (tmp!='\0')
      |                   ^
salfiles.c:1547:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1547 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1547:22: note: did you mean to dereference the pointer?
 1547 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1549:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1549 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1549:19: note: did you mean to dereference the pointer?
 1549 |               if (tmp!='\0')
      |                   ^
salfiles.c:1370:14: warning: variable ‘tmp1’ set but not used [-Wunused-but-set-variable]
 1370 |              tmp1;
      |              ^~~~
salfiles.c: In function ‘ImportFromFile’:
salfiles.c:2072:20: warning: unused variable ‘sep’ [-Wunused-variable]
 2072 |   SeqEntryPtr      sep = NULL;
      |                    ^~~
salfiles.c:2071:20: warning: unused variable ‘sap’ [-Wunused-variable]
 2071 |   SeqAnnotPtr      sap = NULL;
      |                    ^~~
salfiles.c: In function ‘FindSeqEntryForSeqIdCallback’:
salfiles.c:2672:12: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2672 |            if (SeqIdForSameBioseq(cip->sip, sip))
      |            ^~
salfiles.c:2674:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2674 |               cip->bsp = bsp;
      |               ^~~
salfiles.c: In function ‘sesp_to_pept’:
salfiles.c:2713:18: warning: unused variable ‘bufferPtr’ [-Wunused-variable]
 2713 |                  bufferPtr = NULL;
      |                  ^~~~~~~~~
salfiles.c: In function ‘SaveFeatProc’:
salfiles.c:3387:22: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 3387 |   Int2               handled;
      |                      ^~~~~~~
salfiles.c: In function ‘CCReadAnythingLoop’:
salfiles.c:3685:16: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 3685 |   Uint2        entityID;
      |                ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salfiles.c:48:
salfiles.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salfiles.c:501:19: warning: ‘get_lens_fromseqalign’ defined but not used [-Wunused-function]
  501 | static ValNodePtr get_lens_fromseqalign (SeqAlignPtr salp)
      |                   ^~~~~~~~~~~~~~~~~~~~~
salfiles.c: In function ‘NewFastaRead.constprop’:
salfiles.c:460:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  460 |   if (sip!=NULL)
      |      ^
salfiles.c: In function ‘GapFastaRead’:
salfiles.c:747:25: warning: ‘seqstr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  747 |                  seqstr [lgseq] = strp[j];
      |                         ^
salfiles.c:654:16: note: ‘seqstr’ was declared here
  654 |                seqstr;
      |                ^~~~~~
salfiles.c:724:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  724 |            if (!startp) {
      |               ^
salfiles.c:660:16: note: ‘startp’ was declared here
  660 |   Boolean      startp;
      |                ^~~~~~
salfiles.c: In function ‘CCDownloadProc’:
salfiles.c:2218:9: warning: ‘new_sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2218 |   vnp = SeqEntryToSeqLoc (sep, &n, adp->mol_type);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salfiles.c:2286:15: note: ‘new_sep’ was declared here
 2286 |   SeqEntryPtr new_sep;
      |               ^~~~~~~
salfiles.c: In function ‘ReadLocalAlignment’:
salfiles.c:1287:3: warning: ‘seqvnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1287 |   ValNodeFree (seqvnp);
      |   ^~~~~~~~~~~~~~~~~~~~
salfiles.c:1113:19: note: ‘seqvnp’ was declared here
 1113 |   ValNodePtr vnp, seqvnp;
      |                   ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpanel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from salpanel.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpanel.c: In function ‘go_to_next_to_draw’:
salpanel.c:331:17: warning: statement with no effect [-Wunused-value]
  331 |                 offsettmp;
      |                 ^~~~~~~~~
salpanel.c: In function ‘next_to_draw’:
salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  471 |                 if ( curstr != NULL )
      |                    ^
salpanel.c: In function ‘AssociatePropagatedSubloc’:
salpanel.c:3131:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 3131 |   ValNodePtr   vnp;
      |                ^~~
salpanel.c: In function ‘FeaturePropagateForm’:
salpanel.c:4674:15: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable]
 4674 |   PrompT      ppt;
      |               ^~~
salpanel.c:4669:15: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 4669 |   ButtoN      b;
      |               ^
salpanel.c: In function ‘OkToContinueWithFeatureApply’:
salpanel.c:6103:14: warning: unused variable ‘num_missing’ [-Wunused-variable]
 6103 |   Int4       num_missing = 0, seq_num, start_num;
      |              ^~~~~~~~~~~
salpanel.c: In function ‘DoApplyFeatureToAlignment’:
salpanel.c:6219:31: warning: unused variable ‘found_null’ [-Wunused-variable]
 6219 |   Boolean                     found_null = FALSE;
      |                               ^~~~~~~~~~
salpanel.c: In function ‘ApplyFeatureToAlignment’:
salpanel.c:6421:31: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 6421 |   ButtoN                      b;
      |                               ^
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salpanel.c:45:
salpanel.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salpanel.c:52:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salpanel.c:5059:13: warning: ‘BatchApplyFeatureDetailsMessage’ defined but not used [-Wunused-function]
 5059 | static void BatchApplyFeatureDetailsMessage (DialoG d, Int2 mssg)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salpanel.c:224:13: warning: ‘get_client_rectxy’ defined but not used [-Wunused-function]
  224 | static void get_client_rectxy (PaneL p, RectPtr prc, Int2 x, Int2 y)
      |             ^~~~~~~~~~~~~~~~~
salpanel.c:113:14: warning: ‘leftOvalFillSym’ defined but not used [-Wunused-variable]
  113 | static Uint1 leftOvalFillSym [] = {
      |              ^~~~~~~~~~~~~~~
salpanel.c:110:14: warning: ‘rightOvalFillSym’ defined but not used [-Wunused-variable]
  110 | static Uint1 rightOvalFillSym [] = {
      |              ^~~~~~~~~~~~~~~~
salpanel.c:107:14: warning: ‘leftOvalSym’ defined but not used [-Wunused-variable]
  107 | static Uint1 leftOvalSym [] = {
      |              ^~~~~~~~~~~
salpanel.c:104:14: warning: ‘rightOvalSym’ defined but not used [-Wunused-variable]
  104 | static Uint1 rightOvalSym [] = {
      |              ^~~~~~~~~~~~
salpanel.c:101:14: warning: ‘downTriFillSym’ defined but not used [-Wunused-variable]
  101 | static Uint1 downTriFillSym [] = {
      |              ^~~~~~~~~~~~~~
salpanel.c:98:14: warning: ‘upTriFillSym’ defined but not used [-Wunused-variable]
   98 | static Uint1 upTriFillSym [] = {
      |              ^~~~~~~~~~~~
salpanel.c:89:14: warning: ‘ovalFillSym’ defined but not used [-Wunused-variable]
   89 | static Uint1 ovalFillSym [] = {
      |              ^~~~~~~~~~~
salpanel.c:86:14: warning: ‘diamondFillSym’ defined but not used [-Wunused-variable]
   86 | static Uint1 diamondFillSym [] = {
      |              ^~~~~~~~~~~~~~
salpanel.c:80:14: warning: ‘downTriSym’ defined but not used [-Wunused-variable]
   80 | static Uint1 downTriSym [] = {
      |              ^~~~~~~~~~
salpanel.c:77:14: warning: ‘upTriSym’ defined but not used [-Wunused-variable]
   77 | static Uint1 upTriSym [] = {
      |              ^~~~~~~~
salpanel.c:68:14: warning: ‘ovalSym’ defined but not used [-Wunused-variable]
   68 | static Uint1 ovalSym [] = {
      |              ^~~~~~~
salpanel.c:65:14: warning: ‘diamondSym’ defined but not used [-Wunused-variable]
   65 | static Uint1 diamondSym [] = {
      |              ^~~~~~~~~~
salpanel.c: In function ‘draw_feat.isra’:
salpanel.c:1939:17: warning: ‘col1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1939 |   Int4          col1;
      |                 ^~~~
salpanel.c: In function ‘on_draw’:
salpanel.c:2527:23: warning: ‘draw_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2527 |                       draw_seq (adp, curssp, from_inseq, drw_width, ptlh, curstr, draw_diff, masterstr, TRUE, itemsubtype, FALSE);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salparam.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salparam.c: In function ‘mergelst’:
salparam.c:1325:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
 1325 |   Boolean          val;
      |                    ^~~
salparam.c: In function ‘unmergelst’:
salparam.c:1340:20: warning: variable ‘dbdp’ set but not used [-Wunused-but-set-variable]
 1340 |   DialogBoxDataPtr dbdp;
      |                    ^~~~
salparam.c: In function ‘FormulaDialog’:
salparam.c:1398:36: warning: variable ‘b5’ set but not used [-Wunused-but-set-variable]
 1398 |   ButtoN           b1, b2, b3, b4, b5;
      |                                    ^~
salparam.c: In function ‘JK_NTPattern2Ex’:
salparam.c:1596:19: warning: variable ‘debug_str’ set but not used [-Wunused-but-set-variable]
 1596 |   CharPtr         debug_str;
      |                   ^~~~~~~~~
salparam.c: In function ‘DotPlotBtn’:
salparam.c:1936:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1936 |   Int2               status;
      |                      ^~~~~~
salparam.c: In function ‘DotPlotDialog’:
salparam.c:1973:20: warning: variable ‘bt1’ set but not used [-Wunused-but-set-variable]
 1973 |   ButtoN           bt1, bt2;
      |                    ^~~
salparam.c: In function ‘DotPlotItem’:
salparam.c:2004:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 2004 |   Int2               status;
      |                      ^~~~~~
salparam.c: In function ‘SelectSeqFunc’:
salparam.c:2308:20: warning: variable ‘str’ set but not used [-Wunused-but-set-variable]
 2308 |   CharPtr          str;
      |                    ^~~
salparam.c: In function ‘HighlightSelectionFunc’:
salparam.c:2344:22: warning: variable ‘wdp’ set but not used [-Wunused-but-set-variable]
 2344 |   SeqEditViewFormPtr wdp;
      |                      ^~~
salparam.c: In function ‘PropagateFeatureProc’:
salparam.c:2623:25: warning: variable ‘iID’ set but not used [-Wunused-but-set-variable]
 2623 |   Uint2            eID, iID,
      |                         ^~~
salparam.c:2614:20: warning: variable ‘salp’ set but not used [-Wunused-but-set-variable]
 2614 |   SeqAlignPtr      salp;
      |                    ^~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salparam.c:49:
salparam.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from salparam.c:58:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salparam.c: In function ‘FileInProc’:
salparam.c:782:10: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  782 |          fscanf(fp, "%d %ld", &n, &lens);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘DotPlotBtn’:
salparam.c:1951:13: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1951 |         bsp = (BioseqPtr) sep->data.ptrvalue;
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘PropagateFeatDialog’:
salparam.c:2964:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=]
 2964 |         sprintf (str2, " (%ld..%ld)", (long)start, (long)stop);
      |                                ^~~
salparam.c:2964:24: note: directive argument in the range [-2147483647, 2147483647]
 2964 |         sprintf (str2, " (%ld..%ld)", (long)start, (long)stop);
      |                        ^~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 28 bytes into a destination of size 24
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c:2962:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=]
 2962 |         sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop);
      |                                ^~~
salparam.c:2962:24: note: directive argument in the range [-2147483647, 2147483647]
 2962 |         sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 21 and 41 bytes into a destination of size 24
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsa.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salsa.c: In function ‘SelectSubsProc’:
salsa.c:2140:23: warning: variable ‘svpp’ set but not used [-Wunused-but-set-variable]
 2140 |   SeqEditViewProcsPtr svpp=NULL;
      |                       ^~~~
salsa.c: In function ‘SetSeqInfo’:
salsa.c:3195:17: warning: unused variable ‘vnp’ [-Wunused-variable]
 3195 |   ValNodePtr    vnp = NULL;
      |                 ^~~
salsa.c: In function ‘SetupAlignDataSap’:
salsa.c:3410:16: warning: variable ‘entityID_sap’ set but not used [-Wunused-but-set-variable]
 3410 |   Uint2        entityID_sap;
      |                ^~~~~~~~~~~~
salsa.c: In function ‘get_bestpos_formerge’:
salsa.c:4304:17: warning: variable ‘insert_after’ set but not used [-Wunused-but-set-variable]
 4304 |                 insert_after=FALSE;
      |                 ^~~~~~~~~~~~
salsa.c:4303:17: warning: variable ‘insert_before’ set but not used [-Wunused-but-set-variable]
 4303 |   Boolean       insert_before=FALSE,
      |                 ^~~~~~~~~~~~~
salsa.c: In function ‘CreateSeqAlignViewForm’:
salsa.c:4689:22: warning: variable ‘mergebtn’ set but not used [-Wunused-but-set-variable]
 4689 |   ButtoN             mergebtn;
      |                      ^~~~~~~~
salsa.c: In function ‘AlgEditFunc’:
salsa.c:4976:23: warning: unused variable ‘wdp’ [-Wunused-variable]
 4976 |   SeqEditViewFormPtr  wdp = NULL;
      |                       ^~~
salsa.c:4974:23: warning: unused variable ‘w’ [-Wunused-variable]
 4974 |   WindoW              w = NULL;
      |                       ^
salsa.c: In function ‘OldAlignmentEditor’:
salsa.c:5106:16: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
 5106 |   Int2         rval;
      |                ^~~~
salsa.c: In function ‘LaunchAnnotAlignEditor’:
salsa.c:5293:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5293 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignEditor’:
salsa.c:5310:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5310 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignViewer’:
salsa.c:5327:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5327 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignEditorFromDesktop’:
salsa.c:5342:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 5342 |   OMProcControlPtr ompcp;
      |                    ^~~~~
salsa.c: In function ‘LaunchAlignEditorFromDesktop2’:
salsa.c:5359:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 5359 |   OMProcControlPtr ompcp;
      |                    ^~~~~
salsa.c: In function ‘InsertSeqProc’:
salsa.c:5538:17: warning: variable ‘cnclbt’ set but not used [-Wunused-but-set-variable]
 5538 |   ButtoN insbt, cnclbt;
      |                 ^~~~~~
salsa.c:5536:10: warning: variable ‘insprt’ set but not used [-Wunused-but-set-variable]
 5536 |   PrompT insprt;
      |          ^~~~~~
salsa.c: In function ‘SeqAlignBestHit’:
salsa.c:5605:22: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
 5605 |    Int4              last;
      |                      ^~~~
salsa.c: In function ‘SeqAlignStartUpdate’:
salsa.c:5791:22: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
 5791 |   Int2        index, k, j;
      |                      ^
salsa.c:5790:15: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5790 |               start;
      |               ^~~~~
salsa.c:5789:15: warning: variable ‘len_sum’ set but not used [-Wunused-but-set-variable]
 5789 |   Int4        len_sum,
      |               ^~~~~~~
salsa.c:5786:15: warning: variable ‘lenp’ set but not used [-Wunused-but-set-variable]
 5786 |   Int4Ptr     lenp,
      |               ^~~~
salsa.c:5785:15: warning: variable ‘pre’ set but not used [-Wunused-but-set-variable]
 5785 |   SeqIdPtr    pre, sip, next;
      |               ^~~
salsa.c: In function ‘CCNormalizeSeqAlignId’:
salsa.c:6746:23: warning: unused variable ‘gi’ [-Wunused-variable]
 6746 |   Int4                gi = 0;
      |                       ^~
salsa.c:6745:17: warning: unused variable ‘missing_fmt’ [-Wunused-variable]
 6745 |   CharPtr       missing_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\n";
      |                 ^~~~~~~~~~~
salsa.c:6744:17: warning: unused variable ‘missing_cont_fmt’ [-Wunused-variable]
 6744 |   CharPtr       missing_cont_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\nContinue anyway?\n";
      |                 ^~~~~~~~~~~~~~~~
salsa.c: In function ‘ValidateSeqAlignandACCEx’:
salsa.c:7106:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable]
 7106 |   MsgAnswer    ans;
      |                ^~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salsa.c:48:
salsa.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salsa.c:68:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salsa.c:87:13: warning: ‘InsertSequenceDlg’ declared ‘static’ but never defined [-Wunused-function]
   87 | static void InsertSequenceDlg (ButtoN b);
      |             ^~~~~~~~~~~~~~~~~
salsa.c:5973:13: warning: ‘SWPrintFarpointerAln’ defined but not used [-Wunused-function]
 5973 | static void SWPrintFarpointerAln(SeqAlignPtr sap, FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~
salsa.c:2360:13: warning: ‘MakeCdRgnrProc’ defined but not used [-Wunused-function]
 2360 | static void MakeCdRgnrProc (IteM i) {
      |             ^~~~~~~~~~~~~~
salsa.c:2356:13: warning: ‘MakeCdRgnProc’ defined but not used [-Wunused-function]
 2356 | static void MakeCdRgnProc (IteM i) {
      |             ^~~~~~~~~~~~~
salsa.c:1760:13: warning: ‘AcceptCloseWindowButton’ defined but not used [-Wunused-function]
 1760 | static void AcceptCloseWindowButton (ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
In file included from salsa.c:52:
../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable]
   50 | static CharPtr GBFeat[number_GBFeat] = {
      |                ^~~~~~
In file included from ../include/ncbi.h:65,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
salsa.c: In function ‘ExportFASTAForUnselectedUpdates’:
../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  113 | #define FileClose Nlm_FileClose
      |                   ^~~~~~~~~~~~~
salsa.c:6350:23: note: ‘fp’ was declared here
 6350 |   FILE               *fp;
      |                       ^~
In file included from ../include/ncbi.h:65,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
salsa.c: In function ‘ExportBadAlignments’:
../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  113 | #define FileClose Nlm_FileClose
      |                   ^~~~~~~~~~~~~
salsa.c:6318:23: note: ‘fp’ was declared here
 6318 |   FILE               *fp;
      |                       ^~
salsa.c: In function ‘SeqAlignBestHit.constprop’:
salsa.c:5746:23: warning: ‘nctr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5746 |          *nonly = nctr+beg+end;
      |                   ~~~~^~~~
salsa.c:5748:24: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5748 |          *nonly = -(beg+end);
      |                    ~~~~^~~~~
salsa.c:5746:23: warning: ‘beg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5746 |          *nonly = nctr+beg+end;
      |                   ~~~~^~~~
salsa.c: In function ‘BioseqEditMsgFunc’:
salsa.c:912:51: warning: ‘anp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  912 |         ssp = SelStructNew (anp->seq_entityID, anp->bsp_itemID, OBJ_BIOSEQ, from, to, anp->sip, Seq_strand_plus, FALSE);
      |                                                ~~~^~~~~~~~~~~~
salsa.c:890:20: note: ‘anp’ was declared here
  890 |   AlignNodePtr     anp;
      |                    ^~~
salsa.c: In function ‘DeleteProc’:
salsa.c:1955:165: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1955 |               if ((adp->sap1_original && (FindSeqIdinSeqAlign ((SeqAlignPtr)adp->sap1_original->data, SeqLocId(slp))) > 0) || (FindSeqIdinSeqAlign ((SeqAlignPtr)sap->data, SeqLocId(slp))) > 0)
      |                                                                                                                                                                  ~~~^~~~~~
salsa.c: In function ‘SkipThisWindowProc’:
salsa.c:4591:6: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4591 |      LaunchAlignViewer(salp);
      |      ^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqfltr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqfltr.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqfltr.c: In function ‘FilterSeq’:
seqfltr.c:259:21: warning: ‘fptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  259 |         sgp->values = (Pointer) fptr;
      |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgraph.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqgraph.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqgraph.c: In function ‘EndPointDialogToEndPointValNode’:
seqgraph.c:140:10: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 |   return (Pointer) eplist;
      |          ^~~~~~~~~~~~~~~~
seqgraph.c: In function ‘SeqLocGraphViewProc’:
seqgraph.c:1136:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1136 |   while (eplist != NULL)
      |         ^
seqgraph.c: In function ‘MarkPrims’:
seqgraph.c:911:11: warning: ‘fval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  911 |       val = fval/2;
      |       ~~~~^~~~~~~~
seqgraph.c: In function ‘CutOffProc’:
seqgraph.c:1018:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1018 |   while (eplist != NULL)
      |         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgrphx.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqgrphx.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqgrphx.c:301:13: warning: ‘CleanupGCFilterForm’ defined but not used [-Wunused-function]
  301 | static void CleanupGCFilterForm  (GraphiC g, VoidPtr data)
      |             ^~~~~~~~~~~~~~~~~~~
seqgrphx.c:152:25: warning: ‘FilterMsgFunc’ defined but not used [-Wunused-function]
  152 | static Int2 LIBCALLBACK FilterMsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~~~
seqgrphx.c:28:25: warning: ‘MatrixMsgFunc’ defined but not used [-Wunused-function]
   28 | static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmtrx.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqmtrx.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqmtrx.c:387:20: warning: ‘MatrixSearch’ defined but not used [-Wunused-function]
  387 | static SeqGraphPtr MatrixSearch (BioseqPtr bsp, Int2 matrixtype)
      |                    ^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpcc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqpcc.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqpcc.c: In function ‘PCCProc’:
seqpcc.c:229:14: warning: ‘pbsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  229 |   if ((spp = SeqPortNew (pbsp, start, end, 0, Seq_code_iupacaa)) != NULL)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqanal.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqanal.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aacomp.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from aacomp.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
aacomp.c:86:20: warning: ‘AACGraph’ defined but not used [-Wunused-function]
   86 | static SeqGraphPtr AACGraph (SeqPortPtr spp, Int4 start, Int4 end, Int4 window,
      |                    ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqscrl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from ../include/seqscrl.h:4,
                 from seqscrl.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valdlg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vibforms.h:46,
                 from valdlg.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valdlg.c: In function ‘ClickRulesDoc’:
valdlg.c:373:22: warning: unused variable ‘scroll_pos’ [-Wunused-variable]
  373 |   Int2               scroll_pos = 0;
      |                      ^~~~~~~~~~
valdlg.c:372:22: warning: unused variable ‘sb_vert’ [-Wunused-variable]
  372 |   BaR                sb_vert = NULL;
      |                      ^~~~~~~
valdlg.c: In function ‘UpdateRuleList’:
valdlg.c:479:26: warning: unused variable ‘last_cr’ [-Wunused-variable]
  479 |   CommentRulePtr new_cr, last_cr = NULL;
      |                          ^~~~~~~
valdlg.c: In function ‘SaveRuleChanges’:
valdlg.c:540:23: warning: variable ‘dlg’ set but not used [-Wunused-but-set-variable]
  540 |   CommentSetDlgPtr    dlg;
      |                       ^~~
valdlg.c: In function ‘LaunchCommentRulesEditor’:
valdlg.c:553:23: warning: unused variable ‘m’ [-Wunused-variable]
  553 |   MenU                m;
      |                       ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsm.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vsmpriv.h:48,
                 from vsm.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsm.c: In function ‘VSMDrawAbout’:
vsm.c:1436:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1436 |     if (vsmp->title != NULL)
      |     ^~
vsm.c:1438:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1438 |  if (vsmp->aboutinfo != NULL)
      |  ^~
vsm.c: In function ‘VSMAboutProc’:
vsm.c:1466:8: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 1466 |  PaneL p;
      |        ^
vsm.c: In function ‘VSeqMgrCreateMainWindow’:
vsm.c:1569:12: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable]
 1569 |  ObjMgrPtr omp;
      |            ^~~
vsm.c: In function ‘VSeqMgrPopulateMain’:
vsm.c:1710:13: warning: variable ‘atp’ set but not used [-Wunused-but-set-variable]
 1710 |  AsnTypePtr atp;
      |             ^~~
vsm.c: In function ‘VSMGatherPictProc’:
vsm.c:2193:15: warning: variable ‘bssp’ set but not used [-Wunused-but-set-variable]
 2193 |  BioseqSetPtr bssp;
      |               ^~~~
vsm.c:2188:30: warning: variable ‘bottom’ set but not used [-Wunused-but-set-variable]
 2188 |  Int4 top, lineheight, left, bottom, width, maxwidth;
      |                              ^~~~~~
vsm.c: In function ‘VSMAddPictureToEntity’:
vsm.c:2821:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable]
 2821 |  Pointer ptr;
      |          ^~~
vsm.c:2820:13: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2820 |  ValNodePtr vnp;
      |             ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmfile.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vsmpriv.h:48,
                 from vsmfile.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsmfile.c: In function ‘VSMGenericBinAsnOpen’:
vsmfile.c:259:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  259 |     ButtoN b;
      |            ^
vsmfile.c: In function ‘VSMGenericFastaSave’:
vsmfile.c:395:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable]
  395 |     Uint1 code;
      |           ^~~~
vsmfile.c: In function ‘VSMFastaProtSaveWithProduct’:
vsmfile.c:527:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable]
  527 |     Uint1 code;
      |           ^~~~
vsmfile.c: In function ‘VSMSaveSetsAsFiles’:
vsmfile.c:1368:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 1368 |   OMProcControlPtr ompcp;
      |                    ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vsmutil.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsmutil.c: In function ‘GetDocPosForError’:
vsmutil.c:1743:18: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
 1743 |   Int2           val;
      |                  ^~~
At top level:
vsmutil.c:1628:16: warning: ‘MakeFieldReports’ defined but not used [-Wunused-function]
 1628 | static Boolean MakeFieldReports (ValNodePtr report_list, ValNodePtr field_list, FILE *fp)
      |                ^~~~~~~~~~~~~~~~
vsmutil.c:387:20: warning: ‘GetSeqDescGivenIDs’ defined but not used [-Wunused-function]
  387 | static SeqDescrPtr GetSeqDescGivenIDs (Uint2 entityID, Uint4 itemID, Uint2 itemtype)
      |                    ^~~~~~~~~~~~~~~~~~
vsmutil.c: In function ‘ContinueProc’:
vsmutil.c:2256:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2256 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2255:5: note: within this loop
 2255 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘RevalidateProc’:
vsmutil.c:2223:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2223 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2222:5: note: within this loop
 2222 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘SetVerbosityAndRepopulate’:
vsmutil.c:2297:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2297 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2296:5: note: within this loop
 2296 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘ClearValidateWindow’:
vsmutil.c:613:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
  613 |         vep->counts [sev] = 0;
      |         ~~~~~~~~~~~~~~~~~~^~~
vsmutil.c:612:7: note: within this loop
  612 |       for (sev = SEV_NONE; sev <= SEV_MAX; sev++) {
      |       ^~~
vsmutil.c: In function ‘CreateValidateWindowExExEx’:
vsmutil.c:2620:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2620 |           vep->counts [i] = 0;
      |           ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2619:9: note: within this loop
 2619 |         for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |         ^~~
vsmutil.c: In function ‘ContinueProc’:
vsmutil.c:2256:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2256 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
vsmutil.c: In function ‘RevalidateProc’:
vsmutil.c:2223:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2223 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
vsmutil.c: In function ‘SetVerbosityAndRepopulate’:
vsmutil.c:2297:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2297 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
vsmutil.c: In function ‘ClearValidateWindow’:
vsmutil.c:613:21: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
  613 |         vep->counts [sev] = 0;
      |         ~~~~~~~~~~~~^~~~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
vsmutil.c: In function ‘CreateValidateWindowExExEx’:
vsmutil.c:2620:23: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2620 |           vep->counts [i] = 0;
      |           ~~~~~~~~~~~~^~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvgraph.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvgraph.c:177:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvgraph.c: In function ‘UDV_click_item’:
udvgraph.c:877:9: warning: unused variable ‘IsTransNeeded’ [-Wunused-variable]
  877 | Boolean IsTransNeeded=FALSE;
      |         ^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_SendBSPSelectMsg’:
udvgraph.c:1230:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
 1230 | Boolean     bDeselectAll=TRUE;
      |             ^~~~~~~~~~~~
udvgraph.c:1226:30: warning: variable ‘bsp_coord_old’ set but not used [-Wunused-but-set-variable]
 1226 | Int4        first_bsp_coord, bsp_coord_old,old_pos;
      |                              ^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_draw_helixDNA’:
udvgraph.c:1827:15: warning: variable ‘cyChar_2’ set but not used [-Wunused-but-set-variable]
 1827 | Int2 cxChar_2,cyChar_2;
      |               ^~~~~~~~
udvgraph.c: In function ‘draw_logo’:
udvgraph.c:1940:38: warning: variable ‘cyGlobal’ set but not used [-Wunused-but-set-variable]
 1940 | Int2 pos,cxChar=7,cyChar=13,cxGlobal,cyGlobal;
      |                                      ^~~~~~~~
udvgraph.c: In function ‘UDV_draw_CDS_minus’:
udvgraph.c:2337:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
 2337 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
udvgraph.c:2332:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable]
 2332 |     numivals2=0,
      |     ^~~~~~~~~
udvgraph.c: In function ‘UDV_draw_CDS_plus’:
udvgraph.c:2461:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
 2461 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_draw_panel’:
udvgraph.c:4111:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4111 |         if(vdp->vgp->MasterViewer == SAMVIEWDDV)
      |         ^~
udvgraph.c:4113:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4113 |             Row = ViewMgr_GetRow(svpp, vdp->userkey);
      |             ^~~
udvgraph.c:4041:21: warning: unused variable ‘vnp_seqinfo’ [-Wunused-variable]
 4041 | ValNodePtr          vnp_seqinfo=NULL;
      |                     ^~~~~~~~~~~
udvgraph.c:4035:45: warning: variable ‘nLinesDraw’ set but not used [-Wunused-but-set-variable]
 4035 | Int4     decal_haut,from_row,to_row,nTotRow,nLinesDraw;
      |                                             ^~~~~~~~~~
udvgraph.c:4035:37: warning: variable ‘nTotRow’ set but not used [-Wunused-but-set-variable]
 4035 | Int4     decal_haut,from_row,to_row,nTotRow,nLinesDraw;
      |                                     ^~~~~~~
At top level:
udvgraph.c:3921:14: warning: ‘UDV_calc_decalRC’ defined but not used [-Wunused-function]
 3921 | static Int4  UDV_calc_decalRC(ValNodePtr ParaG,Int4 ScrollPos,
      |              ^~~~~~~~~~~~~~~~
udvgraph.c:3433:14: warning: ‘UDV_Draw_features_label’ defined but not used [-Wunused-function]
 3433 | static void  UDV_Draw_features_label(UnDViewerGraphDataPtr GrData,
      |              ^~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:1298:13: warning: ‘UDV_AutoSelectAllSeq’ defined but not used [-Wunused-function]
 1298 | static void UDV_AutoSelectAllSeq(ViewerDialogDataPtr vdp,Boolean bSelect)
      |             ^~~~~~~~~~~~~~~~~~~~
udvgraph.c:971:14: warning: ‘UDV_draw_horz_cursor’ defined but not used [-Wunused-function]
  971 | static void  UDV_draw_horz_cursor(UnDViewerGraphDataPtr GrData,
      |              ^~~~~~~~~~~~~~~~~~~~
udvgraph.c:948:13: warning: ‘UDV_draw_vert_cursor’ defined but not used [-Wunused-function]
  948 | static void UDV_draw_vert_cursor(RecT rcClip,PoinT pos)
      |             ^~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from udvgraph.c:180:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
udvgraph.c: In function ‘UDV_GetCurrentDispRange’:
udvgraph.c:638:15: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  638 |  *from_bsp=pgp->StartLetter;
      |            ~~~^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_Draw_features’:
udvgraph.c:3203:58: warning: ‘idx6’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3203 |     UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
      |                                                   ~~~~~~~^~~~~~
udvgraph.c:3203:38: warning: ‘idx5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3203 |     UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
      |                              ~~~~~~~~^~~~~~
udvgraph.c:3196:47: warning: ‘idx4’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3196 |     stop2=_min_(pgp->StopLetter,context->ivals[idx4]);
      |                                               ^
udvgraph.c:3189:58: warning: ‘idx3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3189 |     UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
      |                                                   ~~~~~~~^~~~~~
udvgraph.c:3189:38: warning: ‘idx2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3189 |     UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
      |                              ~~~~~~~~^~~~~~
udvgraph.c:3182:49: warning: ‘idx1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3182 |     start2=_max_(pgp->StartLetter,context->ivals[idx1]);
      |                                                 ^
In file included from ../include/udviewer.h:225,
                 from udvgraph.c:177:
../include/udvdef.h:187:40: warning: ‘stop_x2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  187 | #define _max_(a,b)        ((a)>=(b)?(a):(b))
      |                                        ^
udvgraph.c:2803:21: note: ‘stop_x2’ was declared here
 2803 | Int2 start_x,stop_x,stop_x2,  /*id. but in pixels*/
      |                     ^~~~~~~
udvgraph.c: In function ‘UDV_ClickProc’:
udvgraph.c:1461:8: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1461 |        UDV_SelectFeatInFeatDlg(vmp,entityID,itemID);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvopen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvopen.c:101:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvopen.c: In function ‘UDV_FileOpen’:
udvopen.c:875:16: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
  875 | ButtoN    b,b1,b2;
      |                ^~
udvopen.c:875:11: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  875 | ButtoN    b,b1,b2;
      |           ^
udvopen.c: In function ‘UDV_CreateListBioseqDlg’:
udvopen.c:1180:9: warning: the address of ‘szName’ will always evaluate as ‘true’ [-Waddress]
 1180 |     if (szName){
      |         ^~~~~~
udvopen.c: In function ‘UDV_FOpenCancelProc’:
udvopen.c:792:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  792 |     UDV_set_PullMenus(&vmp->MainMenu,TRUE);
      |                       ^~~~~~~~~~~~~~
udvopen.c: In function ‘UDV_analyze_SEP_for_open’:
udvopen.c:325:15: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  325 |  vmp->entityID=entityID;
      |  ~~~~~~~~~~~~~^~~~~~~~~
udvopen.c:327:14: warning: ‘dataptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  327 |  vmp->dataptr=dataptr;
      |  ~~~~~~~~~~~~^~~~~~~~
udvopen.c: In function ‘UDV_FOpenAcceptProc’:
udvopen.c:855:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  855 |     UDV_set_PullMenus(&vmp->MainMenu,TRUE);
      |                       ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvpanel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvpanel.c:197:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvpanel.c: In function ‘UDV_GotoBtnProc’:
udvpanel.c:2080:22: warning: variable ‘old_ivalue’ set but not used [-Wunused-but-set-variable]
 2080 | Int4          iValue,old_ivalue,line_num,from_bsp,to_bsp,
      |                      ^~~~~~~~~~
udvpanel.c:2079:15: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2079 | ValNodePtr    vnp;
      |               ^~~
udvpanel.c: In function ‘CreateMainControls’:
udvpanel.c:2165:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable]
 2165 | Int2   cxChar,cyChar,Margins;
      |        ^~~~~~
udvpanel.c: In function ‘UDV_SearchFeatForKey’:
udvpanel.c:3478:14: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3478 | ButtoN    b1,b2;
      |              ^~
At top level:
udvpanel.c:2773:28: warning: ‘FeaturesListBoxScan’ defined but not used [-Wunused-function]
 2773 | static Boolean LIBCALLBACK FeaturesListBoxScan (SeqFeatPtr sfp,
      |                            ^~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/udviewer.h:220,
                 from udvpanel.c:197:
udvpanel.c: In function ‘InitFeaturesListDlg’:
../include/vibdefns.h:342:19: warning: ‘pop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  342 | #define PopupItem Nlm_PopupItem
      |                   ^~~~~~~~~~~~~
udvpanel.c:3194:7: note: ‘pop’ was declared here
 3194 | PopuP pop;
      |       ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotvibrant.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/dotviewer.h:15,
                 from dotvibrant.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dotvibrant.c: In function ‘DOT_DisplayHits’:
dotvibrant.c:564:18: warning: variable ‘ycomp’ set but not used [-Wunused-but-set-variable]
  564 |   Int4           ycomp, xcomp;
      |                  ^~~~~
dotvibrant.c: In function ‘DOT_VscrlProc’:
dotvibrant.c:918:16: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable]
  918 |   Int2         visLines, vmargin, hmargin;
      |                ^~~~~~~~
dotvibrant.c: In function ‘DOT_HscrlProc’:
dotvibrant.c:972:20: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable]
  972 |   Int2         dx, visLines, offset, hmargin, vmargin;
      |                    ^~~~~~~~
dotvibrant.c: In function ‘DOT_VCrossHairs’:
dotvibrant.c:1402:10: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1402 |   Int4   cursor_size =15;
      |          ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_HCrossHairs’:
dotvibrant.c:1427:9: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1427 |   Int4  cursor_size = 15;
      |         ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_MoveCrossHairs’:
dotvibrant.c:1453:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 1453 |   DOTSelDataPtr  data;
      |                  ^~~~
dotvibrant.c:1452:10: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1452 |   Int4   cursor_size = 15;
      |          ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_DrawXAxis’:
dotvibrant.c:1532:38: warning: unused variable ‘title’ [-Wunused-variable]
 1532 |   Char         scale_buf[15] = {""}, title[50]={""}; /*scale value*/
      |                                      ^~~~~
dotvibrant.c: In function ‘DOT_DrawYAxis’:
dotvibrant.c:1642:38: warning: unused variable ‘title’ [-Wunused-variable]
 1642 |   Char         scale_buf[15] = {""}, title[50]={""}; /*scale value*/
      |                                      ^~~~~
dotvibrant.c:1641:55: warning: variable ‘Fh_4’ set but not used [-Wunused-but-set-variable]
 1641 |   Int4         pos, ylen, x, y, scale_pos, i, j, Fh_2,Fh_4;
      |                                                       ^~~~
dotvibrant.c: In function ‘DOT_SVDisplayDiags’:
dotvibrant.c:1770:28: warning: variable ‘aln_diag’ set but not used [-Wunused-but-set-variable]
 1770 |   Int4               diag, aln_diag;
      |                            ^~~~~~~~
dotvibrant.c:1770:22: warning: variable ‘diag’ set but not used [-Wunused-but-set-variable]
 1770 |   Int4               diag, aln_diag;
      |                      ^~~~
dotvibrant.c:1766:22: warning: variable ‘width’ set but not used [-Wunused-but-set-variable]
 1766 |   Int4               width, height;
      |                      ^~~~~
dotvibrant.c:1765:31: warning: variable ‘p_HFrom’ set but not used [-Wunused-but-set-variable]
 1765 |   Int4               p_VFrom, p_HFrom;
      |                               ^~~~~~~
dotvibrant.c:1765:22: warning: variable ‘p_VFrom’ set but not used [-Wunused-but-set-variable]
 1765 |   Int4               p_VFrom, p_HFrom;
      |                      ^~~~~~~
dotvibrant.c:1762:28: warning: unused variable ‘cutoff’ [-Wunused-variable]
 1762 |   Int4               stop, cutoff=0, q_start, s_start, length;
      |                            ^~~~~~
dotvibrant.c:1760:34: warning: variable ‘seg3’ set but not used [-Wunused-but-set-variable]
 1760 |   SegmenT            seg1, seg2, seg3, seg4;
      |                                  ^~~~
dotvibrant.c: In function ‘DOT_FillNewSeqBufs’:
dotvibrant.c:2197:19: warning: unused variable ‘alp’ [-Wunused-variable]
 2197 |   DOTAlignInfoPtr alp=NULL;
      |                   ^~~
dotvibrant.c: In function ‘DOT_InitCInfo’:
dotvibrant.c:2258:14: warning: unused variable ‘colBuf’ [-Wunused-variable]
 2258 |   Char       colBuf[12]={""};
      |              ^~~~~~
dotvibrant.c: In function ‘DOT_SVDisplaySequence’:
dotvibrant.c:2379:16: warning: variable ‘matrix’ set but not used [-Wunused-but-set-variable]
 2379 |   Int4Ptr PNTR matrix;
      |                ^~~~~~
dotvibrant.c:2367:14: warning: variable ‘vis_2’ set but not used [-Wunused-but-set-variable]
 2367 |   Int4       vis_2, buf_len;
      |              ^~~~~
dotvibrant.c:2364:14: warning: unused variable ‘prot_threshold’ [-Wunused-variable]
 2364 |   Int4       prot_threshold=0, bloc_cntr;
      |              ^~~~~~~~~~~~~~
dotvibrant.c:2350:24: warning: variable ‘mip2’ set but not used [-Wunused-but-set-variable]
 2350 |   DOTMainDataPtr mip1, mip2;
      |                        ^~~~
dotvibrant.c: In function ‘DOT_SVClickProc’:
dotvibrant.c:2807:17: warning: unused variable ‘handled’ [-Wunused-variable]
 2807 |   Int2          handled=0;
      |                 ^~~~~~~
dotvibrant.c: In function ‘DOT_ResizeFeatWindow’:
dotvibrant.c:3016:63: warning: variable ‘SubjectHeight’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                                               ^~~~~~~~~~~~~
dotvibrant.c:3016:51: warning: variable ‘QueryHeight’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                                   ^~~~~~~~~~~
dotvibrant.c:3016:37: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                     ^~~
dotvibrant.c: In function ‘DOT_ResizeSequenceWindow’:
dotvibrant.c:3098:25: warning: variable ‘is_visible2’ set but not used [-Wunused-but-set-variable]
 3098 |   Boolean  is_visible1, is_visible2;
      |                         ^~~~~~~~~~~
dotvibrant.c:3098:12: warning: variable ‘is_visible1’ set but not used [-Wunused-but-set-variable]
 3098 |   Boolean  is_visible1, is_visible2;
      |            ^~~~~~~~~~~
dotvibrant.c:3095:51: warning: variable ‘V1Height’ set but not used [-Wunused-but-set-variable]
 3095 |   Int2     height,width,gap,vsbWidth,in,hsbHeight,V1Height,V2Height, goHeight;
      |                                                   ^~~~~~~~
dotvibrant.c: In function ‘DOT_HideFeatDlg’:
dotvibrant.c:3745:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 3745 |     ButtoN b;
      |            ^
dotvibrant.c: In function ‘DOT_SVBuildDiagViewer’:
dotvibrant.c:4031:18: warning: variable ‘mip’ set but not used [-Wunused-but-set-variable]
 4031 |   DOTMainDataPtr mip;
      |                  ^~~
dotvibrant.c:4029:28: warning: unused variable ‘str2’ [-Wunused-variable]
 4029 |   Char      str1[41]={""}, str2[41]={""};
      |                            ^~~~
dotvibrant.c:4029:13: warning: unused variable ‘str1’ [-Wunused-variable]
 4029 |   Char      str1[41]={""}, str2[41]={""};
      |             ^~~~
dotvibrant.c:4022:18: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable]
 4022 |   PrompT    pr1, pr2;
      |                  ^~~
dotvibrant.c:4022:13: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable]
 4022 |   PrompT    pr1, pr2;
      |             ^~~
dotvibrant.c: In function ‘DOT_UpdateDataRects’:
dotvibrant.c:4166:19: warning: variable ‘dy’ set but not used [-Wunused-but-set-variable]
 4166 |   Int4  comp, dx, dy, xstart, ystart;
      |                   ^~
dotvibrant.c:4166:15: warning: variable ‘dx’ set but not used [-Wunused-but-set-variable]
 4166 |   Int4  comp, dx, dy, xstart, ystart;
      |               ^~
dotvibrant.c: In function ‘DOT_MsgFunc’:
dotvibrant.c:4215:17: warning: variable ‘vdp2’ set but not used [-Wunused-but-set-variable]
 4215 |   DOTVibDataPtr vdp2 = NULL;
      |                 ^~~~
dotvibrant.c: In function ‘DOT_ReleaseProc’:
dotvibrant.c:4373:32: warning: unused variable ‘yaxis_incr’ [-Wunused-variable]
 4373 |   Boolean     xaxis_incr=TRUE, yaxis_incr=TRUE;
      |                                ^~~~~~~~~~
dotvibrant.c:4373:15: warning: unused variable ‘xaxis_incr’ [-Wunused-variable]
 4373 |   Boolean     xaxis_incr=TRUE, yaxis_incr=TRUE;
      |               ^~~~~~~~~~
dotvibrant.c:4371:19: warning: variable ‘alp’ set but not used [-Wunused-but-set-variable]
 4371 |   DOTAlignInfoPtr alp=NULL;
      |                   ^~~
dotvibrant.c:4370:18: warning: variable ‘mip1’ set but not used [-Wunused-but-set-variable]
 4370 |   DOTMainDataPtr mip1=NULL;
      |                  ^~~~
dotvibrant.c: In function ‘DOT_StartDOTPLOT’:
dotvibrant.c:4891:23: warning: variable ‘vdp’ set but not used [-Wunused-but-set-variable]
 4891 |   DOTVibDataPtr       vdp;
      |                       ^~~
dotvibrant.c: In function ‘DOT_DoZoom’:
dotvibrant.c:5106:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 5106 |   DOTSelDataPtr  data;
      |                  ^~~~
dotvibrant.c: In function ‘DOT_ZoomProc’:
dotvibrant.c:5204:23: warning: variable ‘temport’ set but not used [-Wunused-but-set-variable]
 5204 |   WindoW              temport, w;
      |                       ^~~~~~~
dotvibrant.c: In function ‘AlnMgr2GetNextLine’:
dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value]
 5315 |   *n++;
      |   ^~~~
dotvibrant.c: In function ‘DOT_GetAlign’:
dotvibrant.c:5332:44: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
 5332 |   Int4         x1, y1, x2, y2, numlines=0, n=0, i=0;
      |                                            ^
dotvibrant.c: In function ‘DOT_FillAlignInfoPointer’:
dotvibrant.c:5565:16: warning: unused variable ‘i’ [-Wunused-variable]
 5565 |   Int4         i=0, n=0;
      |                ^
dotvibrant.c: In function ‘DOT_Prob_FillAlignInfoPointer’:
dotvibrant.c:5681:16: warning: unused variable ‘i’ [-Wunused-variable]
 5681 |   Int4         i=0, n=0;
      |                ^
dotvibrant.c:5680:16: warning: unused variable ‘numsaps’ [-Wunused-variable]
 5680 |   Int4         numsaps = 0, numlines = 0;
      |                ^~~~~~~
dotvibrant.c:5678:37: warning: unused variable ‘sap_tmp’ [-Wunused-variable]
 5678 |   SeqAlignPtr  sap=NULL, salp=NULL, sap_tmp=NULL;
      |                                     ^~~~~~~
dotvibrant.c: In function ‘DOT_DoBlast’:
dotvibrant.c:5918:23: warning: unused variable ‘eval’ [-Wunused-variable]
 5918 |   Char                eval[11]={""};
      |                       ^~~~
dotvibrant.c:5917:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable]
 5917 |   Boolean             is_local;
      |                       ^~~~~~~~
dotvibrant.c:5915:23: warning: unused variable ‘entityID’ [-Wunused-variable]
 5915 |   Uint2               entityID=0;
      |                       ^~~~~~~~
dotvibrant.c: In function ‘DOT_CreateWindowDetails’:
dotvibrant.c:6214:27: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable]
 6214 |   PrompT             pr1, pr2;
      |                           ^~~
dotvibrant.c:6214:22: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable]
 6214 |   PrompT             pr1, pr2;
      |                      ^~~
dotvibrant.c:6207:21: warning: variable ‘g1’ set but not used [-Wunused-but-set-variable]
 6207 |   GrouP          g, g1, g2;
      |                     ^~
dotvibrant.c: In function ‘DOT_ResizeMainWindow’:
dotvibrant.c:6273:35: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
 6273 |   Int2        height, width, in , gap;
      |                                   ^~~
dotvibrant.c: In function ‘DOT_FindAlignment’:
dotvibrant.c:6662:29: warning: unused variable ‘rb_fixed’ [-Wunused-variable]
 6662 |   Boolean   lt_fixed=FALSE, rb_fixed=FALSE;
      |                             ^~~~~~~~
dotvibrant.c:6662:13: warning: unused variable ‘lt_fixed’ [-Wunused-variable]
 6662 |   Boolean   lt_fixed=FALSE, rb_fixed=FALSE;
      |             ^~~~~~~~
dotvibrant.c:6661:17: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 6661 |   DOTSelDataPtr data;
      |                 ^~~~
dotvibrant.c: In function ‘SCP_CompareOrderOrganizeBioseqs’:
dotvibrant.c:6792:25: warning: variable ‘itemID’ set but not used [-Wunused-but-set-variable]
 6792 |    Uint4                itemID=0;
      |                         ^~~~~~
dotvibrant.c: In function ‘SCP_OrganizeAlnsInSet’:
dotvibrant.c:6873:21: warning: variable ‘indextype’ set but not used [-Wunused-but-set-variable]
 6873 |    Int4             indextype;
      |                     ^~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from ../include/dotviewer.h:32,
                 from dotvibrant.c:84:
dotvibrant.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/dotviewer.h:32,
                 from dotvibrant.c:84:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dotvibrant.c:6642:16: warning: ‘DOT_DeselectPrim’ defined but not used [-Wunused-function]
 6642 | static Boolean DOT_DeselectPrim (SegmenT seg, PrimitivE prim, Uint2 segID,Uint2 primID, Uint2 primCt, VoidPtr userdata)
      |                ^~~~~~~~~~~~~~~~
dotvibrant.c:6346:13: warning: ‘DOT_NewAnalysis’ defined but not used [-Wunused-function]
 6346 | static void DOT_NewAnalysis (ButtoN b)
      |             ^~~~~~~~~~~~~~~
dotvibrant.c:5894:16: warning: ‘DOT_get_eval’ defined but not used [-Wunused-function]
 5894 | static FloatHi DOT_get_eval(Int4 exp)
      |                ^~~~~~~~~~~~
dotvibrant.c:5325:16: warning: ‘DOT_GetAlign’ defined but not used [-Wunused-function]
 5325 | static Boolean DOT_GetAlign (DOTAlignInfoPtr alp)
      |                ^~~~~~~~~~~~
dotvibrant.c:5281:16: warning: ‘AlnMgr2GetNextLine’ defined but not used [-Wunused-function]
 5281 | static Boolean AlnMgr2GetNextLine(SeqAlignPtr sap, AlnMsg2Ptr amp1, AlnMsg2Ptr amp2, Int4Ptr x1, Int4Ptr y1, Int4Ptr x2, Int4Ptr y2, Int4Ptr n)
      |                ^~~~~~~~~~~~~~~~~~
dotvibrant.c:4767:13: warning: ‘DOT_FeatAnalysisProc’ defined but not used [-Wunused-function]
 4767 | static void DOT_FeatAnalysisProc(ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~
dotvibrant.c:4749:13: warning: ‘DOT_GetInfoProc’ defined but not used [-Wunused-function]
 4749 | static void DOT_GetInfoProc (IteM i)
      |             ^~~~~~~~~~~~~~~
dotvibrant.c:4213:25: warning: ‘DOT_MsgFunc’ defined but not used [-Wunused-function]
 4213 | static Int2 LIBCALLBACK DOT_MsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~
dotvibrant.c:3688:13: warning: ‘DOT_HideAcceptProc’ defined but not used [-Wunused-function]
 3688 | static void DOT_HideAcceptProc(ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~
dotvibrant.c:3318:13: warning: ‘DOT_AddFeatureToSegment’ defined but not used [-Wunused-function]
 3318 | static void DOT_AddFeatureToSegment(SeqMgrFeatContextPtr context,
      |             ^~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2954:13: warning: ‘DOT_SVChangeLabels’ defined but not used [-Wunused-function]
 2954 | static void DOT_SVChangeLabels (GrouP g)
      |             ^~~~~~~~~~~~~~~~~~
dotvibrant.c:2760:16: warning: ‘DOT_SVGetDiag’ defined but not used [-Wunused-function]
 2760 | static Boolean DOT_SVGetDiag (Uint2 segID, Uint2 primID, VoidPtr userdata)
      |                ^~~~~~~~~~~~~
dotvibrant.c: In function ‘DOT_GetNthSeqFromAlign’:
dotvibrant.c:5087:3: warning: ‘spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5087 |   SeqPortFree(spp);
      |   ^~~~~~~~~~~~~~~~
dotvibrant.c: In function ‘DOT_SVPopulateSequenceViewer.part.0’:
dotvibrant.c:2611:19: warning: ‘strand2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2380:23: note: ‘strand2’ was declared here
 2380 |   Uint1      strand1, strand2;
      |                       ^~~~~~~
dotvibrant.c:2611:19: warning: ‘strand1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2380:14: note: ‘strand1’ was declared here
 2380 |   Uint1      strand1, strand2;
      |              ^~~~~~~
dotvibrant.c:2561:45: warning: ‘residue_names’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2561 |                       sBuf[c]=*residue_names[(int)*s];
      |                                             ^
dotvibrant.c:2378:16: note: ‘residue_names’ was declared here
 2378 |   CharPtr PNTR residue_names;
      |                ^~~~~~~~~~~~~
dotvibrant.c:2611:19: warning: ‘s_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:42: note: ‘s_pos’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                                          ^~~~~
dotvibrant.c:2611:19: warning: ‘q_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:35: note: ‘q_pos’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                                   ^~~~~
dotvibrant.c:2504:21: warning: ‘hit_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2504 |   hit_stop+=hit_stop/10;
      |             ~~~~~~~~^~~
dotvibrant.c:2370:25: note: ‘hit_stop’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                         ^~~~~~~~
dotvibrant.c:2572:27: warning: ‘hit_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2572 |                           DOT_HlSeq(sbSeg, rc, margin, i+1, bloc_size, hit_start, hit_stop, Fh,chw_2);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:14: note: ‘hit_start’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |              ^~~~~~~~~
dotvibrant.c:2503:16: warning: ‘buf_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2503 |   end=s+buf_len-1;
      |                ^
dotvibrant.c:2367:21: note: ‘buf_len’ was declared here
 2367 |   Int4       vis_2, buf_len;
      |                     ^~~~~~~
dotvibrant.c:2545:18: warning: ‘is_na’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2545 |               if (is_na)
      |                  ^
dotvibrant.c:2361:27: note: ‘is_na’ was declared here
 2361 |   Boolean    ambig=FALSE, is_na;
      |                           ^~~~~
dotvibrant.c:2503:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2503 |   end=s+buf_len-1;
      |   ~~~^~~~~~~~~~~~
dotvibrant.c:2357:14: note: ‘s’ was declared here
 2357 |   Uint1Ptr   s;
      |              ^
dotvibrant.c:2626:16: warning: ‘q’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2626 |               q++;
      |               ~^~
dotvibrant.c:2356:14: note: ‘q’ was declared here
 2356 |   Uint1Ptr   q;
      |              ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil1.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dlgutil1.c: In function ‘IsAuthList’:
dlgutil1.c:2962:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 2962 |   Int4 len;
      |        ^~~
dlgutil1.c: In function ‘TestIntervalEditor’:
dlgutil1.c:5324:20: warning: variable ‘fuzz_to’ set but not used [-Wunused-but-set-variable]
 5324 |   Int2             fuzz_to;
      |                    ^~~~~~~
dlgutil1.c:5323:20: warning: variable ‘fuzz_from’ set but not used [-Wunused-but-set-variable]
 5323 |   Int2             fuzz_from;
      |                    ^~~~~~~~~
dlgutil1.c:5322:41: warning: variable ‘fuzz_before’ set but not used [-Wunused-but-set-variable]
 5322 |   Boolean          isInterval, isPoint, fuzz_before, fuzz_after;
      |                                         ^~~~~~~~~~~
dlgutil1.c: In function ‘DbtagDialogToDbtagPtr’:
dlgutil1.c:7254:16: warning: unused variable ‘val’ [-Wunused-variable]
 7254 |   long int     val;
      |                ^~~
dlgutil1.c:7250:16: warning: unused variable ‘ptr’ [-Wunused-variable]
 7250 |   CharPtr      ptr;
      |                ^~~
dlgutil1.c:7247:16: warning: unused variable ‘num_digits’ [-Wunused-variable]
 7247 |   Int2         num_digits;
      |                ^~~~~~~~~~
dlgutil1.c:7246:16: warning: unused variable ‘notallzero’ [-Wunused-variable]
 7246 |   Boolean      notallzero;
      |                ^~~~~~~~~~
dlgutil1.c:7243:16: warning: unused variable ‘leadingzero’ [-Wunused-variable]
 7243 |   Boolean      leadingzero;
      |                ^~~~~~~~~~~
dlgutil1.c:7238:16: warning: unused variable ‘alldigits’ [-Wunused-variable]
 7238 |   Boolean      alldigits;
      |                ^~~~~~~~~
dlgutil1.c: In function ‘CreateStandardEditMenu’:
dlgutil1.c:9427:8: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
 9427 |   IteM i;
      |        ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from dlgutil1.c:55:
dlgutil1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dlgutil1.c:8603:25: warning: ‘GetNthNameValuePair’ defined but not used [-Wunused-function]
 8603 | static NameValuePairPtr GetNthNameValuePair (Int4 n, ValNodePtr list)
      |                         ^~~~~~~~~~~~~~~~~~~
dlgutil1.c:8051:16: warning: ‘ParseSpecimenVoucherOk’ defined but not used [-Wunused-function]
 8051 | static Boolean ParseSpecimenVoucherOk (CharPtr str)
      |                ^~~~~~~~~~~~~~~~~~~~~~
dlgutil1.c:1293:13: warning: ‘GbqualsToVisStringDialog’ defined but not used [-Wunused-function]
 1293 | static void GbqualsToVisStringDialog (SeqFeatPtr sfp, DialoG d, CharPtr qual)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil2.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dlgutil2.c: In function ‘CreateImportFields’:
dlgutil2.c:1401:19: warning: variable ‘is_gap’ set but not used [-Wunused-but-set-variable]
 1401 |   Boolean         is_gap = FALSE;
      |                   ^~~~~~
dlgutil2.c: In function ‘UpdateTableDisplayDialogScrollBars’:
dlgutil2.c:3552:11: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
 3552 |   Int4 x, y;
      |           ^
dlgutil2.c:3552:8: warning: variable ‘x’ set but not used [-Wunused-but-set-variable]
 3552 |   Int4 x, y;
      |        ^
dlgutil2.c: In function ‘GetTableDisplayCell’:
dlgutil2.c:3951:8: warning: variable ‘start_row’ set but not used [-Wunused-but-set-variable]
 3951 |   Int4 start_row, start_col;
      |        ^~~~~~~~~
dlgutil2.c: In function ‘NewCreateInferenceDialog’:
dlgutil2.c:7633:19: warning: variable ‘fnt’ set but not used [-Wunused-but-set-variable]
 7633 |   FonT            fnt;
      |                   ^~~
dlgutil2.c: In function ‘ClickableListOnKey’:
dlgutil2.c:10479:20: warning: variable ‘clp’ set but not used [-Wunused-but-set-variable]
10479 |   ClickableListPtr clp;
      |                    ^~~
dlgutil2.c: In function ‘GetSelectedClickableListText’:
dlgutil2.c:11151:36: warning: variable ‘char_offset’ set but not used [-Wunused-but-set-variable]
11151 |   Int2             item, row, col, char_offset;
      |                                    ^~~~~~~~~~~
dlgutil2.c: In function ‘AutomatchFeatures’:
dlgutil2.c:14210:36: warning: variable ‘s3’ set but not used [-Wunused-but-set-variable]
14210 |   SeqIntPtr                s1, s2, s3;
      |                                    ^~
At top level:
dlgutil2.c:12342:16: warning: ‘ParseMultiListQualOk’ defined but not used [-Wunused-function]
12342 | static Boolean ParseMultiListQualOk (CharPtr val)
      |                ^~~~~~~~~~~~~~~~~~~~
dlgutil2.c:10336:13: warning: ‘ClickClickableListItem’ defined but not used [-Wunused-function]
10336 | static void ClickClickableListItem (DoC d, PoinT pt)
      |             ^~~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:10316:13: warning: ‘DrawClickableListItem’ defined but not used [-Wunused-function]
10316 | static void DrawClickableListItem (DoC d, RectPtr r, Int2 item, Int2 firstLine)
      |             ^~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:8854:13: warning: ‘GetCategoryNumFromName’ defined but not used [-Wunused-function]
 8854 | static Int4 GetCategoryNumFromName (CharPtr category)
      |             ^~~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:1676:16: warning: ‘GetNameForFeature’ defined but not used [-Wunused-function]
 1676 | static CharPtr GetNameForFeature (SeqFeatPtr sfp)
      |                ^~~~~~~~~~~~~~~~~
dlgutil2.c: In function ‘PopulateDayPopup’:
dlgutil2.c:11438:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
11438 |       sprintf (day, "%d", i);
      |                        ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil2.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2trmlst.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from e2trmlst.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
e2trmlst.c: In function ‘ReadAFew’:
e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value]
 2230 |   for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) {
      |                                                             ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2docsum.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
e2docsum.c: In function ‘FormatCdsSeq’:
e2docsum.c:1523:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable]
 1523 |   SeqFeatPtr         gene = NULL;
      |                      ^~~~
e2docsum.c: In function ‘FetchSequence’:
e2docsum.c:1591:16: warning: variable ‘currDbName’ set but not used [-Wunused-but-set-variable]
 1591 |   CharPtr      currDbName;
      |                ^~~~~~~~~~
e2docsum.c:1580:16: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
 1580 |   Uint1        group_segs = 0;
      |                ^~~~~~~~~~
e2docsum.c: In function ‘SaveDocsumProject’:
e2docsum.c:3606:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 3606 |   SummFormPtr  sfp;
      |                ^~~
e2docsum.c: In function ‘RetrieveGeneration’:
e2docsum.c:4135:19: warning: variable ‘e2ip’ set but not used [-Wunused-but-set-variable]
 4135 |   Entrez2InfoPtr  e2ip;
      |                   ^~~~
e2docsum.c: In function ‘SetupMenus’:
e2docsum.c:4849:16: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
 4849 |   ChoicE       c;
      |                ^
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/bspview.h:48,
                 from e2docsum.c:53:
e2docsum.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strucapi.h:52,
                 from e2docsum.c:62:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchStructureViewer’:
e2docsum.c:2981:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2981 |   system (cmmd);
      |   ^~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchSequin’:
e2docsum.c:2838:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2838 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
e2docsum.c:2883:13: warning: ‘GetBiostrucMaxModels’ defined but not used [-Wunused-function]
 2883 | static Int4 GetBiostrucMaxModels (void)
      |             ^~~~~~~~~~~~~~~~~~~~
e2docsum.c:2850:13: warning: ‘GetBiostrucComplexity’ defined but not used [-Wunused-function]
 2850 | static Int4 GetBiostrucComplexity (void)
      |             ^~~~~~~~~~~~~~~~~~~~~
e2docsum.c:2154:20: warning: ‘cddDocProcs’ defined but not used [-Wunused-variable]
 2154 | static DocPrntProc cddDocProcs [] = { Query_FetchDocSum, Query_FetchFields, FetchUid, NULL };
      |                    ^~~~~~~~~~~
e2docsum.c: In function ‘LaunchStructureViewer’:
e2docsum.c:2980:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=]
 2980 |   sprintf (cmmd, "Cn3D %s &", path);
      |                        ^~     ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchSequin.constprop’:
e2docsum.c:2837:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4084 [-Wformat-overflow=]
 2837 |   sprintf (cmmd, "sequin -x < %s &", path);
      |                               ^~     ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2graphic.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2graphic.c: In function ‘ParseFilterItem’:
asn2graphic.c:1191:21: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
 1191 |   Int2           i, j;
      |                     ^
asn2graphic.c: In function ‘GeneProductsLayoutInternal’:
asn2graphic.c:3730:36: warning: variable ‘featureStart’ set but not used [-Wunused-but-set-variable]
 3730 |   Int4                    newLeft, featureStart, rowMaxRight;
      |                                    ^~~~~~~~~~~~
asn2graphic.c: In function ‘ScaleSntDrawProc’:
asn2graphic.c:4402:28: warning: variable ‘r’ set but not used [-Wunused-but-set-variable]
 4402 |   RecT                     r;
      |                            ^
asn2graphic.c: In function ‘GphSentProc’:
asn2graphic.c:4997:16: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable]
 4997 |   Int4         scaleY;
      |                ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2graphic.c:46:
asn2graphic.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2graphic.c: In function ‘ProcessRows’:
asn2graphic.c:4362:13: warning: ‘SegmentTreeBot’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4362 |       if (! EnsureFeatureHasSegment (FPSP, featdeftype, SegmentTreeBot)) return 0;
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2graphic.h:46,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
../include/picture.h:499:23: warning: ‘SegmentTreeMid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  499 | #define CreateSegment Nlm_CreateSegment
      |                       ^~~~~~~~~~~~~~~~~
asn2graphic.c:4278:27: note: ‘SegmentTreeMid’ was declared here
 4278 |   SegmenT                 SegmentTreeMid;
      |                           ^~~~~~~~~~~~~~
In file included from ../include/asn2graphic.h:46,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
../include/picture.h:499:23: warning: ‘SegmentTreeTop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  499 | #define CreateSegment Nlm_CreateSegment
      |                       ^~~~~~~~~~~~~~~~~
asn2graphic.c:4277:27: note: ‘SegmentTreeTop’ was declared here
 4277 |   SegmenT                 SegmentTreeTop;
      |                           ^~~~~~~~~~~~~~
asn2graphic.c: In function ‘ParseConfigFile’:
asn2graphic.c:1198:27: warning: ‘%s’ directive writing up to 127 bytes into a region of size 120 [-Wformat-overflow=]
 1198 |   sprintf (sect, "filters.%s", filterItemName);
      |                           ^~
......
 1500 |       FIP = ParseFilterItem (buf, defaultRowPadding, defaultGroupPadding, defaultLayout, VCP);
      |                              ~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 9 and 136 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:946:21: warning: ‘.master’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
  946 |   sprintf (sect, "%s.master", appearanceNameInFile);
      |                     ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1006:29: warning: ‘.bioseq’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1006 |   sprintf (outputBuffer, "%s.bioseq", appearanceNameInFile);
      |                             ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1008:29: warning: ‘.imp’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1008 |   sprintf (outputBuffer, "%s.imp", appearanceNameInFile);
      |                             ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1011:31: warning: ‘.import’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1011 |     sprintf (outputBuffer, "%s.import", appearanceNameInFile);
      |                               ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1021:32: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 127 [-Wformat-overflow=]
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                                ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 134 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1021:32: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 127 [-Wformat-overflow=]
  707 |       featName = "graph";
      |                  ~~~~~~~        
......
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                                ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 134 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1021:32: warning: ‘%s’ directive writing likely 7 or more bytes into a region of size between 0 and 127 [-Wformat-overflow=]
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                                ^~
asn2graphic.c:1021:28: note: assuming directive output of 7 bytes
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                            ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 136) into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF medview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/medview.h:48,
                 from medview.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medview.c: In function ‘PrintMedlineViewForm’:
medview.c:588:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  588 |       system (cmmd);
      |       ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bspview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from bspview.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gbfview.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gbfview.c: In function ‘RelModeFailText’:
gbfview.c:1004:22: warning: variable ‘hasPubs’ set but not used [-Wunused-but-set-variable]
 1004 |   Boolean            hasPubs;
      |                      ^~~~~~~
gbfview.c: In function ‘PopulateFlatFile’:
gbfview.c:1292:22: warning: variable ‘doColors’ set but not used [-Wunused-but-set-variable]
 1292 |   Boolean            doColors;
      |                      ^~~~~~~~
gbfview.c: In function ‘PopulateFasta’:
gbfview.c:1717:33: warning: left-hand operand of comma expression has no effect [-Wunused-value]
 1717 |     if (ISA_na (bsp->mol)) {TRUE,
      |                                 ^
gbfview.c:1649:20: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
 1649 |   Uint1            group_segs;
      |                    ^~~~~~~~~~
gbfview.c: In function ‘PopulateAsnOrXML’:
gbfview.c:1972:16: warning: variable ‘lookupFar’ set but not used [-Wunused-but-set-variable]
 1972 |   Boolean      lookupFar = FALSE;
      |                ^~~~~~~~~
gbfview.c:1971:16: warning: variable ‘lockFar’ set but not used [-Wunused-but-set-variable]
 1971 |   Boolean      lockFar = FALSE;
      |                ^~~~~~~
gbfview.c: In function ‘PrintFlatFileFastaOrAsn’:
gbfview.c:2494:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2494 |     system (cmmd);
      |     ^~~~~~~~~~~~~
gbfview.c: In function ‘ReleaseIcon’:
gbfview.c:667:21: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  667 |                     system (cmmd);
      |                     ^~~~~~~~~~~~~
At top level:
gbfview.c:1234:13: warning: ‘LookForFarProds’ defined but not used [-Wunused-function]
 1234 | static void LookForFarProds (
      |             ^~~~~~~~~~~~~~~
gbfview.c:1215:13: warning: ‘LookForFarBsp’ defined but not used [-Wunused-function]
 1215 | static void LookForFarBsp (
      |             ^~~~~~~~~~~~~
gbfview.c:944:13: warning: ‘LookForPubs’ defined but not used [-Wunused-function]
  944 | static void LookForPubs (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~~
gbfview.c:289:16: warning: ‘ColorIcon’ defined but not used [-Wunused-function]
  289 | static Boolean ColorIcon (
      |                ^~~~~~~~~
gbfview.c: In function ‘ReleaseIcon’:
gbfview.c:666:42: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
  666 |                     sprintf (cmmd, "open %s", path);
      |                                          ^~   ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gbfview.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gphview.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gphview.c: In function ‘ReleaseAlignment’:
gphview.c:1306:18: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
 1306 |   SeqLocPtr      slp;
      |                  ^~~
gphview.c: In function ‘DrawAlignOnAllSequences’:
gphview.c:1391:10: warning: variable ‘vn’ set but not used [-Wunused-but-set-variable]
 1391 |  ValNode vn;
      |          ^~
gphview.c: In function ‘ReleaseDesktop’:
gphview.c:1836:18: warning: variable ‘seg’ set but not used [-Wunused-but-set-variable]
 1836 |   SegmenT        seg;
      |                  ^~~
gphview.c: In function ‘AutoScrollGeneName’:
gphview.c:2100:21: warning: variable ‘num’ set but not used [-Wunused-but-set-variable]
 2100 |   Int2              num;
      |                     ^~~
gphview.c: In function ‘DisplayGeneChoiceWindow’:
gphview.c:2426:22: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 2426 |   PrompT             p;
      |                      ^
gphview.c: In function ‘PrintGraphical’:
gphview.c:3268:14: warning: unused variable ‘ans’ [-Wunused-variable]
 3268 |   MsgAnswer  ans;
      |              ^~~
gphview.c: In function ‘PopulateAsn2GphGraphic’:
gphview.c:3868:16: warning: variable ‘min’ set but not used [-Wunused-but-set-variable]
 3868 |   Int4         min;
      |                ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphdraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gphdraw.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gphdraw.c: In function ‘GraphSentProc’:
gphdraw.c:195:18: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable]
  195 |   Int4           scaleY;
      |                  ^~~~~~
gphdraw.c: In function ‘DrawGraphToPanel’:
gphdraw.c:453:27: warning: variable ‘xp’ set but not used [-Wunused-but-set-variable]
  453 |   Int4Ptr        xpoints, xp;
      |                           ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gxydraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gxydraw.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gxydraw.c: In function ‘DotXYPlot’:
gxydraw.c:259:19: warning: ‘xaxiscount’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  259 |   gsp->xaxiscount = xaxiscount;
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
gxydraw.c:182:19: note: ‘xaxiscount’ was declared here
  182 |   Int4            xaxiscount, yaxiscount;
      |                   ^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gtrdraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gtrdraw.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpanel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqpanel.c: In function ‘FillFeatureInfo’:
seqpanel.c:427:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable]
  427 |   Int4 j, start, stop;
      |                  ^~~~
seqpanel.c:427:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
  427 |   Int4 j, start, stop;
      |           ^~~~~
seqpanel.c: In function ‘DrawFeatureCodonLines’:
seqpanel.c:1897:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 1897 |   Char              tmp[2];
      |                     ^~~
seqpanel.c: In function ‘DrawFeature’:
seqpanel.c:2127:21: warning: variable ‘prot_len’ set but not used [-Wunused-but-set-variable]
 2127 |   Int4              prot_len;
      |                     ^~~~~~~~
seqpanel.c: In function ‘GetSeqChapterFeatureInfo’:
seqpanel.c:3136:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable]
 3136 |   Int4 j, start, stop;
      |                  ^~~~
seqpanel.c:3136:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 3136 |   Int4 j, start, stop;
      |           ^~~~~
seqpanel.c: In function ‘onSeqEdVScrollBarSeqPanel’:
seqpanel.c:3406:17: warning: variable ‘totallines’ set but not used [-Wunused-but-set-variable]
 3406 |   Int4          totallines;
      |                 ^~~~~~~~~~
seqpanel.c: In function ‘PrintFeature’:
seqpanel.c:3812:28: warning: variable ‘fRight’ set but not used [-Wunused-but-set-variable]
 3812 |   Int4              fLeft, fRight, swap;
      |                            ^~~~~~
seqpanel.c:3812:21: warning: variable ‘fLeft’ set but not used [-Wunused-but-set-variable]
 3812 |   Int4              fLeft, fRight, swap;
      |                     ^~~~~
seqpanel.c: In function ‘PrintTranslatedFrame’:
seqpanel.c:3966:17: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 3966 |   Char          tmp[2];
      |                 ^~~
seqpanel.c: In function ‘ExportSequenceText’:
seqpanel.c:4372:44: warning: pointer targets in passing argument 1 of ‘complement_string’ differ in signedness [-Wpointer-sign]
 4372 |               complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET);
      |                                            ^
      |                                            |
      |                                            Nlm_Uint1Ptr {aka unsigned char *}
In file included from ../include/alignmgr2.h:112,
                 from seqpanel.c:39:
../include/salutil.h:78:47: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1Ptr’ {aka ‘unsigned char *’}
   78 | NLM_EXTERN CharPtr complement_string (CharPtr str);
seqpanel.c:4236:17: warning: variable ‘curr_para_strings’ set but not used [-Wunused-but-set-variable]
 4236 |   ValNodePtr    curr_para_strings = NULL;
      |                 ^~~~~~~~~~~~~~~~~
seqpanel.c:4229:17: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
 4229 |   Uint1Ptr      buf;
      |                 ^~~
seqpanel.c: In function ‘SeqEdOnClick’:
seqpanel.c:4946:21: warning: variable ‘direction’ set but not used [-Wunused-but-set-variable]
 4946 |   Int4              direction;
      |                     ^~~~~~~~~
seqpanel.c: In function ‘SeqAlnOnDrag’:
seqpanel.c:5685:34: warning: variable ‘is_ctrl’ set but not used [-Wunused-but-set-variable]
 5685 |   Boolean       is_double_click, is_ctrl;
      |                                  ^~~~~~~
seqpanel.c:5685:17: warning: variable ‘is_double_click’ set but not used [-Wunused-but-set-variable]
 5685 |   Boolean       is_double_click, is_ctrl;
      |                 ^~~~~~~~~~~~~~~
seqpanel.c: In function ‘ResizeSeqEdView’:
seqpanel.c:5760:8: warning: variable ‘sequence_pos’ set but not used [-Wunused-but-set-variable]
 5760 |   Int4 sequence_pos = 0;
      |        ^~~~~~~~~~~~
seqpanel.c:5755:8: warning: variable ‘height’ set but not used [-Wunused-but-set-variable]
 5755 |   Int4 height, width;
      |        ^~~~~~
seqpanel.c: In function ‘WriteAlignmentInterleaveToFileEx’:
seqpanel.c:8665:22: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8665 |               fputs (fp, printed_line);
      |                      ^~
      |                      |
      |                      FILE *
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/stdio.h:631:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’
  631 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~^~~
seqpanel.c:8665:26: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8665 |               fputs (fp, printed_line);
      |                          ^~~~~~~~~~~~
      |                          |
      |                          Nlm_CharPtr {aka char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/stdio.h:631:64: note: expected ‘FILE * restrict’ but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’}
  631 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                                               ~~~~~~~~~~~~~~~~~^~~~~~~~
seqpanel.c: In function ‘WriteAlignmentContiguousToFile’:
seqpanel.c:8761:20: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8761 |             fputs (fp, printed_line);
      |                    ^~
      |                    |
      |                    FILE *
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/stdio.h:631:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’
  631 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~^~~
seqpanel.c:8761:24: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8761 |             fputs (fp, printed_line);
      |                        ^~~~~~~~~~~~
      |                        |
      |                        Nlm_CharPtr {aka char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/stdio.h:631:64: note: expected ‘FILE * restrict’ but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’}
  631 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                                               ~~~~~~~~~~~~~~~~~^~~~~~~~
seqpanel.c: In function ‘ReverseSequenceStrandsInAlignment’:
seqpanel.c:9008:17: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9008 |   SeqEntryPtr   sep;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqpanel.c:39:
seqpanel.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
seqpanel.c:1171:16: warning: ‘GetAlignmentColumnPercentIDsForAlignmentSection’ defined but not used [-Wunused-function]
 1171 | static double *GetAlignmentColumnPercentIDsForAlignmentSection (BioseqViewPtr bvp, Int4 line, Int4 aln_idx)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
seqpanel.c: In function ‘SeqEdFindPatternDialog’:
../include/vibdefns.h:535:22: warning: ‘g1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  535 | #define AlignObjects Nlm_AlignObjects
      |                      ^~~~~~~~~~~~~~~~
seqpanel.c:7632:25: note: ‘g1’ was declared here
 7632 |   GrouP              h, g1, g2;
      |                         ^~
In file included from ../include/ncbi.h:62,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
seqpanel.c: In function ‘PrintFeature’:
../include/ncbistr.h:331:19: warning: ‘str_prot’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
seqpanel.c:3810:21: note: ‘str_prot’ was declared here
 3810 |   CharPtr           str_prot;
      |                     ^~~~~~~~
seqpanel.c: In function ‘SeqEdExportProc’:
seqpanel.c:4329:13: warning: ‘seq_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4329 |             SeqEdPrintTextLineToFile ((CharPtr)file_line, from, to, seq_pos, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
seqpanel.c:4233:17: note: ‘seq_pos’ was declared here
 4233 |   Int4          seq_pos;
      |                 ^~~~~~~
seqpanel.c: In function ‘onDrawSeqPanel’:
seqpanel.c:1301:24: warning: ‘alnbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1301 |     MemCpy(buf, alnbuf + from, len);
      |                 ~~~~~~~^~~~~~
seqpanel.c:2466:33: note: ‘alnbuf’ was declared here
 2466 |   Uint1Ptr         buf, seqbuf, alnbuf;
      |                                 ^~~~~~
seqpanel.c:1252:3: warning: ‘seqbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1252 |   AlignmentIntervalToString (tmp_salp, row, start, stop, bvp->TargetRow,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1253 |                              bvp->viewWholeEntity, seqbuf, alnbuf, &alnbuf_len,
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1254 |                              bvp->showAlnSubstitutions);
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~
seqpanel.c:2466:25: note: ‘seqbuf’ was declared here
 2466 |   Uint1Ptr         buf, seqbuf, alnbuf;
      |                         ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingengraph.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/ingengraph.h:52,
                 from ingengraph.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingengraph.c: In function ‘Ing_BigEncodeIdxFeat’:
ingengraph.c:262:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  262 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
ingengraph.c: In function ‘Ing_AddOneAlignToOverviewPage’:
ingengraph.c:355:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  355 |   else
      |   ^~~~
ingengraph.c:357:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  357 |     prim = AddRectangle(seg, start, (row)*(-20), stop, (row)*(-20)+j, NO_ARROW, FALSE,0);
      |     ^~~~
ingengraph.c:347:13: warning: unused variable ‘bsp’ [-Wunused-variable]
  347 |   BioseqPtr bsp=NULL;
      |             ^~~
ingengraph.c: In function ‘Ing_AddAlignsToOverviewPage’:
ingengraph.c:372:18: warning: unused variable ‘buf’ [-Wunused-variable]
  372 |   Char           buf[41]={""};
      |                  ^~~
ingengraph.c:367:18: warning: variable ‘NewLine’ set but not used [-Wunused-but-set-variable]
  367 |   Boolean        NewLine=FALSE;
      |                  ^~~~~~~
ingengraph.c: In function ‘Ing_DrawOverviewPage’:
ingengraph.c:492:14: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
  492 |   Int4       offset;
      |              ^~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/ingengraph.h:54,
                 from ingengraph.c:45:
../include/vibdefns.h:468:17: warning: unused variable ‘Nlm_Visible’ [-Wunused-variable]
  468 | #define Visible Nlm_Visible
      |                 ^~~~~~~~~~~
ingengraph.c:488:14: note: in expansion of macro ‘Visible’
  488 |   Boolean    Visible=FALSE;
      |              ^~~~~~~
ingengraph.c: In function ‘Ing_PopOverviewPage’:
ingengraph.c:715:16: warning: variable ‘margin’ set but not used [-Wunused-but-set-variable]
  715 |   Int4         margin, len;
      |                ^~~~~~
ingengraph.c:714:16: warning: unused variable ‘buf’ [-Wunused-variable]
  714 |   Char         buf[50]={""};
      |                ^~~
ingengraph.c:708:16: warning: unused variable ‘sanp’ [-Wunused-variable]
  708 |   SeqAnnotPtr  sanp=NULL;
      |                ^~~~
ingengraph.c: In function ‘Ing_AddAlignsToDetailedPage’:
ingengraph.c:1097:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1097 |       if ((start - offset - (label_len - feat_len)/2)<0)
      |       ^~
ingengraph.c:1099:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1099 |         if (bOver_the_edge)
      |         ^~
ingengraph.c: In function ‘Ing_PopDetailedPage’:
ingengraph.c:1437:16: warning: variable ‘CurrentSeg’ set but not used [-Wunused-but-set-variable]
 1437 |   SegmenT      CurrentSeg=NULL;
      |                ^~~~~~~~~~
ingengraph.c: In function ‘Ing_ExploreSegments’:
ingengraph.c:1829:22: warning: unused variable ‘isDraft’ [-Wunused-variable]
 1829 |   Boolean            isDraft = FALSE;
      |                      ^~~~~~~
ingengraph.c:1827:22: warning: unused variable ‘vnp’ [-Wunused-variable]
 1827 |   ValNodePtr         vnp = NULL;
      |                      ^~~
ingengraph.c:1826:22: warning: unused variable ‘gbp’ [-Wunused-variable]
 1826 |   GBBlockPtr         gbp = NULL;
      |                      ^~~
ingengraph.c:1824:33: warning: variable ‘black’ set but not used [-Wunused-but-set-variable]
 1824 |   Uint1              orange[3], black[3];
      |                                 ^~~~~
ingengraph.c:1823:33: warning: variable ‘lime’ set but not used [-Wunused-but-set-variable]
 1823 |   Uint1              indigo[3], lime[3];
      |                                 ^~~~
ingengraph.c:1823:22: warning: variable ‘indigo’ set but not used [-Wunused-but-set-variable]
 1823 |   Uint1              indigo[3], lime[3];
      |                      ^~~~~~
ingengraph.c: In function ‘Ing_AddGCRect’:
ingengraph.c:1933:17: warning: variable ‘comp2’ set but not used [-Wunused-but-set-variable]
 1933 |    FloatHi      comp2, comp_prev;
      |                 ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/ingengraph.h:63,
                 from ingengraph.c:45:
ingengraph.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
ingengraph.c:71:13: warning: ‘Ing_GetNamesZoomedVal’ declared ‘static’ but never defined [-Wunused-function]
   71 | static void Ing_GetNamesZoomedVal(VieweR vNames,Int4Ptr from, Int4Ptr to,
      |             ^~~~~~~~~~~~~~~~~~~~~
ingengraph.c:602:28: warning: ‘Ing_CollectFeatures1’ defined but not used [-Wunused-function]
  602 | static Boolean LIBCALLBACK Ing_CollectFeatures1(SeqFeatPtr sfp, SeqMgrFeatContextPtr sfc)
      |                            ^~~~~~~~~~~~~~~~~~~~
ingengraph.c:583:24: warning: ‘Ing_SortByChoice’ defined but not used [-Wunused-function]
  583 | static int LIBCALLBACK Ing_SortByChoice (VoidPtr ptr1, VoidPtr ptr2)
      |                        ^~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenext.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingenext.c: In function ‘Ing_KeepTheBestAlignments’:
ingenext.c:167:20: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable]
  167 |   AMAlignIndex2Ptr amaip = NULL;
      |                    ^~~~~
ingenext.c: In function ‘Ing_HandleQBlastResults’:
ingenext.c:272:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  272 |   while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
      |          ^~~~~~~
ingenext.c: In function ‘Ing_HandleResults’:
ingenext.c:535:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  535 |   while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
      |          ^~~~~~~
ingenext.c: In function ‘Ing_AccepttRNAargsProc’:
ingenext.c:739:18: warning: unused variable ‘paramlist’ [-Wunused-variable]
  739 |   ValNodePtr     paramlist = NULL;
      |                  ^~~~~~~~~
ingenext.c: In function ‘Ing_tRNAscanProc’:
ingenext.c:915:22: warning: unused variable ‘moveMe’ [-Wunused-variable]
  915 |   ValNodePtr         moveMe = NULL;
      |                      ^~~~~~
ingenext.c:906:22: warning: unused variable ‘first’ [-Wunused-variable]
  906 |   TexT               first = NULL;
      |                      ^~~~~
ingenext.c:902:22: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  902 |   ButtoN             b;
      |                      ^
ingenext.c:896:17: warning: unused variable ‘args’ [-Wunused-variable]
  896 |   CharPtr       args = NULL;
      |                 ^~~~
ingenext.c: In function ‘Ing_ReadtRNAConfigFile’:
ingenext.c:1125:15: warning: variable ‘demomode’ set but not used [-Wunused-but-set-variable]
 1125 |   Boolean     demomode = FALSE;
      |               ^~~~~~~~
ingenext.c: In function ‘Ing_DoBlast2Seqs’:
ingenext.c:1312:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable]
 1312 |   Boolean             is_local, first_bsp=TRUE;
      |                       ^~~~~~~~
ingenext.c: In function ‘Ing_CreateDotMatrixForm’:
ingenext.c:1834:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1834 |       while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
      |              ^~~~~~~
ingenext.c: In function ‘Ing_RunSpidey’:
ingenext.c:1994:20: warning: unused variable ‘sanp’ [-Wunused-variable]
 1994 |   SeqAnnotPtr      sanp = NULL;
      |                    ^~~~
ingenext.c:1993:20: warning: unused variable ‘spidp_next’ [-Wunused-variable]
 1993 |   SPI_mRNAPtr      spidp_next = NULL;
      |                    ^~~~~~~~~~
ingenext.c:1992:20: warning: unused variable ‘spidp_head’ [-Wunused-variable]
 1992 |   SPI_mRNAPtr      spidp_head = NULL;
      |                    ^~~~~~~~~~
ingenext.c: In function ‘Ing_ReadmRNAs_ext’:
ingenext.c:2025:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2025 |    while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
      |           ^~~~~~~
ingenext.c: In function ‘Ing_DeleteInsertInGenomic’:
ingenext.c:2522:16: warning: unused variable ‘newsegs’ [-Wunused-variable]
 2522 |   Int2         newsegs = 0, offset = 0;
      |                ^~~~~~~
ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’:
ingenext.c:2777:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2777 |           if (!All)
      |           ^~
ingenext.c:2781:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2781 |             SeqLocReplace(msip, mmis, mmis, mstrand, gsip, gmis, gmis, gstrand);
      |             ^~~~~~~~~~~~~
ingenext.c:2615:21: warning: unused variable ‘str’ [-Wunused-variable]
 2615 |   Char              str[200] = {""};
      |                     ^~~
ingenext.c:2612:22: warning: unused variable ‘amaip’ [-Wunused-variable]
 2612 |   AMAlignIndex2Ptr   amaip = NULL;
      |                      ^~~~~
ingenext.c: In function ‘Ing_MismatchProc’:
ingenext.c:3025:15: warning: unused variable ‘sip’ [-Wunused-variable]
 3025 |   SeqIdPtr    sip = NULL;
      |               ^~~
ingenext.c: In function ‘Ing_PrintSpideyReport’:
ingenext.c:3471:27: warning: variable ‘gmis’ set but not used [-Wunused-but-set-variable]
 3471 |   Int4              mmis, gmis, miscount = 0;
      |                           ^~~~
ingenext.c: In function ‘Ing_PrintBlastReport’:
ingenext.c:3853:18: warning: unused variable ‘more’ [-Wunused-variable]
 3853 |   Boolean        more = FALSE;
      |                  ^~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/vibdefns.h:652:16: warning: variable ‘Nlm_DkGray’ set but not used [-Wunused-but-set-variable]
  652 | #define DkGray Nlm_DkGray
      |                ^~~~~~~~~~
ingenext.c:3850:18: note: in expansion of macro ‘DkGray’
 3850 |   Uint1          DkGray[3];
      |                  ^~~~~~
ingenext.c: In function ‘Ing_PopulateReport’:
ingenext.c:4328:20: warning: unused variable ‘sip’ [-Wunused-variable]
 4328 |   SeqIdPtr         sip=NULL;
      |                    ^~~
ingenext.c:4324:20: warning: unused variable ‘temp’ [-Wunused-variable]
 4324 |   CharPtr          temp = NULL;
      |                    ^~~~
ingenext.c: In function ‘Ing_ResizeReportWindow’:
ingenext.c:4484:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
 4484 |   BaR      hsb;
      |            ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/ingenwin.h:60,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
ingenext.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ingenext.c:130:13: warning: ‘querytimercount’ defined but not used [-Wunused-variable]
  130 | static Int4 querytimercount = 0;
      |             ^~~~~~~~~~~~~~~
ingenext.c:129:13: warning: ‘querytimerlimit’ defined but not used [-Wunused-variable]
  129 | static Int4 querytimerlimit = 100;
      |             ^~~~~~~~~~~~~~~
ingenext.c:59:28: warning: ‘Ing_BlastCallback’ defined but not used [-Wunused-function]
   59 | static Boolean LIBCALLBACK Ing_BlastCallback (BlastResponse *brp,
      |                            ^~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
ingenext.c: In function ‘Ing_DoBlast2Seqs’:
ingenext.c:1457:17: warning: ‘e_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1457 |      e_tmp->next=e_head;
      |      ~~~~~~~~~~~^~~~~~~
ingenext.c: In function ‘Ing_MismatchProc’:
ingenext.c:3170:32: warning: ‘gstart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3170 |         gstart = start + (stop - gstart);
      |                          ~~~~~~^~~~~~~~~
ingenext.c:3206:45: warning: ‘mstart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3206 |       else if (mstart == R1 || mstart == R2 || mstart == R3){
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_AccepttRNAargsProc’:
ingenext.c:780:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  780 |            sprintf (cpy, "%s=%s", upp->param, last);
      |                                ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c:794:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  794 |          sprintf (cpy, "%s=%s", upp->param, last);
      |                              ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’:
ingenext.c:2651:7: warning: ‘nmismatches’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2651 |       for (j = 0; j < nmismatches; j++){
      |       ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenwin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingenwin.c: In function ‘Ing_PopulateDetailedPage’:
ingenwin.c:134:22: warning: unused variable ‘bSelected’ [-Wunused-variable]
  134 |   Boolean            bSelected = FALSE;
      |                      ^~~~~~~~~
ingenwin.c: In function ‘Ing_DoRange’:
ingenwin.c:394:22: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
  394 |   BioseqPtr          bsp;
      |                      ^~~
ingenwin.c: In function ‘Ing_PopulateCpG’:
ingenwin.c:576:19: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable]
  576 |   Int2    cxChar, nchars;
      |                   ^~~~~~
ingenwin.c: In function ‘Ing_ResizeCpGWindow’:
ingenwin.c:642:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
  642 |   BaR      hsb;
      |            ^~~
ingenwin.c: In function ‘Ing_PopulateMotif’:
ingenwin.c:718:26: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable]
  718 |   Int2           cxChar, nchars;
      |                          ^~~~~~
ingenwin.c:717:24: warning: variable ‘swidth’ set but not used [-Wunused-but-set-variable]
  717 |   Int4           slen, swidth;
      |                        ^~~~~~
ingenwin.c:717:18: warning: variable ‘slen’ set but not used [-Wunused-but-set-variable]
  717 |   Int4           slen, swidth;
      |                  ^~~~
ingenwin.c: In function ‘Ing_ResizeMotifWindow’:
ingenwin.c:785:12: warning: unused variable ‘name’ [-Wunused-variable]
  785 |   CharPtr  name = NULL;
      |            ^~~~
ingenwin.c:783:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
  783 |   BaR      hsb;
      |            ^~~
ingenwin.c: In function ‘Ing_ShowComplexity’:
ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1270 |   while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){
      |          ^
ingenwin.c: In function ‘Ing_CreateNewFeature’:
ingenwin.c:1301:22: warning: unused variable ‘rnatype’ [-Wunused-variable]
 1301 |   Uint1              rnatype=0;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_GetAlignmentIntervals’:
ingenwin.c:1418:20: warning: unused variable ‘master’ [-Wunused-variable]
 1418 |    SeqIdPtr        master = NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_OldGetAlignmentIntervals’:
ingenwin.c:1494:20: warning: unused variable ‘master’ [-Wunused-variable]
 1494 |    SeqIdPtr        master = NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_OldMakeLocListFromSAP’:
ingenwin.c:1613:26: warning: unused variable ‘slp2’ [-Wunused-variable]
 1613 |   SeqLocPtr slp1 = NULL, slp2 = NULL;
      |                          ^~~~
ingenwin.c:1613:13: warning: unused variable ‘slp1’ [-Wunused-variable]
 1613 |   SeqLocPtr slp1 = NULL, slp2 = NULL;
      |             ^~~~
ingenwin.c: In function ‘Ing_OM_MsgFunc’:
ingenwin.c:2380:15: warning: the address of ‘sfc’ will always evaluate as ‘true’ [-Waddress]
 2380 |           if (&sfc)
      |               ^
ingenwin.c:2284:22: warning: unused variable ‘segID’ [-Wunused-variable]
 2284 |   Uint2              segID=0;
      |                      ^~~~~
ingenwin.c:2280:22: warning: unused variable ‘sep’ [-Wunused-variable]
 2280 |   SeqEntryPtr        sep=NULL;
      |                      ^~~
ingenwin.c:2271:31: warning: unused variable ‘number’ [-Wunused-variable]
 2271 |   Int4               score=0, number=0;
      |                               ^~~~~~
ingenwin.c:2271:22: warning: unused variable ‘score’ [-Wunused-variable]
 2271 |   Int4               score=0, number=0;
      |                      ^~~~~
ingenwin.c:2270:34: warning: unused variable ‘n’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                                  ^
ingenwin.c:2270:28: warning: unused variable ‘s2’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                            ^~
ingenwin.c:2270:22: warning: unused variable ‘s1’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                      ^~
ingenwin.c: In function ‘Ing_MoveCursor’:
ingenwin.c:2631:9: warning: variable ‘grayClr2’ set but not used [-Wunused-but-set-variable]
 2631 |   Uint1 grayClr2[3];
      |         ^~~~~~~~
ingenwin.c: In function ‘Ing_FeatViewerClickProc’:
ingenwin.c:2814:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2814 |   if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){
      |       ^~~~~~
ingenwin.c:2804:14: warning: unused variable ‘slp’ [-Wunused-variable]
 2804 |   SeqLocPtr  slp=NULL;
      |              ^~~
ingenwin.c: In function ‘Ing_SequenceClickProc’:
ingenwin.c:2908:22: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable]
 2908 |   SelStructPtr       ssp=NULL;
      |                      ^~~
ingenwin.c: In function ‘Ing_ReadInBlastAsn’:
ingenwin.c:3077:19: warning: unused variable ‘Report’ [-Wunused-variable]
 3077 |   IngReportPtr    Report=NULL;
      |                   ^~~~~~
ingenwin.c:3075:19: warning: unused variable ‘sip’ [-Wunused-variable]
 3075 |   SeqIdPtr        sip=NULL;
      |                   ^~~
ingenwin.c:3074:19: warning: unused variable ‘salp’ [-Wunused-variable]
 3074 |   SeqAlignPtr     salp=NULL;
      |                   ^~~~
ingenwin.c:3073:19: warning: unused variable ‘n_sap’ [-Wunused-variable]
 3073 |   SeqAlignPtr     n_sap=NULL;
      |                   ^~~~~
ingenwin.c: In function ‘Ing_ParseSeqIdFile’:
ingenwin.c:3142:20: warning: unused variable ‘bsp’ [-Wunused-variable]
 3142 |    BioseqPtr       bsp=NULL;
      |                    ^~~
ingenwin.c: In function ‘Ing_ReadInFeatureTable’:
ingenwin.c:3194:20: warning: variable ‘sanp’ set but not used [-Wunused-but-set-variable]
 3194 |    SeqAnnotPtr     sanp;
      |                    ^~~~
ingenwin.c: In function ‘Ing_AssembleGenscanInfo’:
ingenwin.c:3258:17: warning: unused variable ‘slp’ [-Wunused-variable]
 3258 |    SeqLocPtr    slp=NULL;
      |                 ^~~
ingenwin.c: In function ‘Ing_ReadInGenscan’:
ingenwin.c:3300:33: warning: unused variable ‘str’ [-Wunused-variable]
 3300 |    CharPtr         letter=NULL, str=NULL;
      |                                 ^~~
ingenwin.c:3300:20: warning: unused variable ‘letter’ [-Wunused-variable]
 3300 |    CharPtr         letter=NULL, str=NULL;
      |                    ^~~~~~
ingenwin.c:3298:33: warning: unused variable ‘first_pass’ [-Wunused-variable]
 3298 |    Boolean         found=FALSE, first_pass=FALSE;
      |                                 ^~~~~~~~~~
ingenwin.c: In function ‘Ing_AssembleTabDelimited’:
ingenwin.c:3519:17: warning: variable ‘score’ set but not used [-Wunused-but-set-variable]
 3519 |    Int4         score;
      |                 ^~~~~
ingenwin.c:3516:17: warning: unused variable ‘tmp’ [-Wunused-variable]
 3516 |    CharPtr      tmp=NULL;
      |                 ^~~
ingenwin.c: In function ‘Ing_ReadInTabDelimited’:
ingenwin.c:3659:40: warning: variable ‘label_str’ set but not used [-Wunused-but-set-variable]
 3659 |    CharPtr         tmp=NULL, str=NULL, label_str=NULL;
      |                                        ^~~~~~~~~
ingenwin.c:3659:20: warning: unused variable ‘tmp’ [-Wunused-variable]
 3659 |    CharPtr         tmp=NULL, str=NULL, label_str=NULL;
      |                    ^~~
ingenwin.c:3653:20: warning: unused variable ‘lip_tmp’ [-Wunused-variable]
 3653 |    IngInfoPtr      lip_tmp=NULL;
      |                    ^~~~~~~
ingenwin.c:3650:20: warning: unused variable ‘letter’ [-Wunused-variable]
 3650 |    CharPtr         letter=NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_FileOpenSpecial’:
ingenwin.c:3984:16: warning: unused variable ‘Report’ [-Wunused-variable]
 3984 |   IngReportPtr Report=NULL;
      |                ^~~~~~
ingenwin.c: In function ‘Ing_FileOpenMain’:
ingenwin.c:4078:21: warning: unused variable ‘sep_orig’ [-Wunused-variable]
 4078 |   SeqEntryPtr       sep_orig=NULL, sep=NULL;
      |                     ^~~~~~~~
ingenwin.c: In function ‘Ing_ResizeMainWindow’:
ingenwin.c:4187:25: warning: variable ‘InfoHeight’ set but not used [-Wunused-but-set-variable]
 4187 |   Int2     RulerHeight, InfoHeight;
      |                         ^~~~~~~~~~
ingenwin.c: In function ‘Ing_OpenFromFileORNetwork’:
ingenwin.c:4491:25: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 4491 |   ButtoN              b,b2;
      |                         ^~
ingenwin.c: In function ‘Ing_EditFeature’:
ingenwin.c:4640:22: warning: variable ‘igvp’ set but not used [-Wunused-but-set-variable]
 4640 |   IngGenomeViewerPtr igvp=NULL;
      |                      ^~~~
ingenwin.c: In function ‘Ing_MarkSeqAnnot’:
ingenwin.c:4713:16: warning: unused variable ‘bNoParent’ [-Wunused-variable]
 4713 |  Boolean       bNoParent = FALSE;
      |                ^~~~~~~~~
ingenwin.c: In function ‘Ing_PropagateClickProc’:
ingenwin.c:5064:22: warning: unused variable ‘primID’ [-Wunused-variable]
 5064 |   Uint2              primID=0;
      |                      ^~~~~~
ingenwin.c:5063:22: warning: unused variable ‘itemtype’ [-Wunused-variable]
 5063 |   Uint2              itemtype=0;
      |                      ^~~~~~~~
ingenwin.c:5062:22: warning: unused variable ‘itemID’ [-Wunused-variable]
 5062 |   Uint4              itemID=0;
      |                      ^~~~~~
ingenwin.c:5061:22: warning: unused variable ‘entityID’ [-Wunused-variable]
 5061 |   Uint2              entityID=0;
      |                      ^~~~~~~~
ingenwin.c:5060:22: warning: unused variable ‘ssp’ [-Wunused-variable]
 5060 |   SelStructPtr       ssp=NULL;
      |                      ^~~
ingenwin.c:5059:22: warning: unused variable ‘igvp’ [-Wunused-variable]
 5059 |   IngGenomeViewerPtr igvp=NULL;
      |                      ^~~~
ingenwin.c: In function ‘Ing_PrintCompProteins’:
ingenwin.c:5146:32: warning: unused variable ‘str2’ [-Wunused-variable]
 5146 |   Char       str1[200] = {""}, str2[10] = {""};
      |                                ^~~~
ingenwin.c: In function ‘Ing_PropagateReport’:
ingenwin.c:5282:14: warning: variable ‘ARROW’ set but not used [-Wunused-but-set-variable]
 5282 |   Uint1      ARROW=NO_ARROW;
      |              ^~~~~
ingenwin.c:5279:14: warning: unused variable ‘stringwidth’ [-Wunused-variable]
 5279 |   Int4       stringwidth = 0;
      |              ^~~~~~~~~~~
ingenwin.c:5277:14: warning: unused variable ‘left’ [-Wunused-variable]
 5277 |   Int4       left = 10;
      |              ^~~~
ingenwin.c:5276:14: warning: variable ‘prim’ set but not used [-Wunused-but-set-variable]
 5276 |   PrimitivE  prim;
      |              ^~~~
ingenwin.c: In function ‘Ing_DoPropagate’:
ingenwin.c:5596:14: warning: unused variable ‘strErr’ [-Wunused-variable]
 5596 |   Char       strErr[50]={""};
      |              ^~~~~~
ingenwin.c: In function ‘Ing_GetFromNetwork’:
ingenwin.c:7518:11: warning: unused variable ‘szAppName’ [-Wunused-variable]
 7518 |   Char    szAppName  [10]={"Ingenue"};
      |           ^~~~~~~~~
ingenwin.c: In function ‘Ing_SetupMainWindow’:
ingenwin.c:7761:16: warning: unused variable ‘szAppName’ [-Wunused-variable]
 7761 | Char           szAppName [10]={"Ingenue"};
      |                ^~~~~~~~~
ingenwin.c:7760:48: warning: unused variable ‘str2’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                                                ^~~~
ingenwin.c:7760:33: warning: unused variable ‘str1’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                                 ^~~~
ingenwin.c:7760:16: warning: unused variable ‘title’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/ingenwin.h:60,
                 from ingenwin.c:45:
ingenwin.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from ingenwin.c:45:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ingenwin.c:7552:13: warning: ‘Ing_ItemtoNetwork’ defined but not used [-Wunused-function]
 7552 | static void Ing_ItemtoNetwork(IteM i){
      |             ^~~~~~~~~~~~~~~~~
ingenwin.c:6717:13: warning: ‘Ing_BspListProc’ defined but not used [-Wunused-function]
 6717 | static void Ing_BspListProc(IteM i)
      |             ^~~~~~~~~~~~~~~
ingenwin.c:5535:16: warning: ‘Ing_KeywordAlreadyInList’ defined but not used [-Wunused-function]
 5535 | static Boolean Ing_KeywordAlreadyInList (ValNodePtr head, CharPtr kwd)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:1869:16: warning: ‘Ing_DeSelectPrim’ defined but not used [-Wunused-function]
 1869 | static Boolean Ing_DeSelectPrim (SegmenT seg, PrimitivE prim, Uint2 segID, Uint2 primID, Uint2 primCt, VoidPtr userdata)
      |                ^~~~~~~~~~~~~~~~
ingenwin.c:1610:18: warning: ‘Ing_OldMakeLocListFromSAP’ defined but not used [-Wunused-function]
 1610 | static SeqLocPtr Ing_OldMakeLocListFromSAP(SeqAlignPtr sap)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:1487:23: warning: ‘Ing_OldGetAlignmentIntervals’ defined but not used [-Wunused-function]
 1487 | static IngIvalInfoPtr Ing_OldGetAlignmentIntervals (SeqAlignPtr sap, Int4 from_row, Int4 to_row, Int4 from, Int4 to, Uint1 strand)
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from ingenwin.c:45:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
ingenwin.c: In function ‘Ing_ReplaceMismatchedProc’:
ingenwin.c:4902:3: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4902 |   Ing_ReplaceAllMismatchedInLocation(igvp, rmp->sap, start, stop, GetStatus(rmp->all), GetStatus(rmp->gaps), GetStatus(rmp->inserts));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:4902:3: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
ingenwin.c: In function ‘Ing_PropagateReport’:
ingenwin.c:5353:17: warning: ‘%s’ directive writing up to 299 bytes into a region of size 255 [-Wformat-overflow=]
 5353 |   sprintf(str, "%s", pfp->name);
      |                 ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 1 and 300 bytes into a destination of size 255
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:5229:37: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5229 |     for (i = last_pos; i <= exit; i += nchars_row){
      |                                   ~~^~~~~~~~~~~~~
ingenwin.c:5137:17: note: ‘j’ was declared here
 5137 |   Int4       i, j, k, row;
      |                 ^
ingenwin.c: In function ‘Ing_DoPropagate’:
ingenwin.c:5625:26: warning: ‘ already exists. Do you stil...’ directive writing 51 bytes into a region of size between 1 and 300 [-Wformat-overflow=]
 5625 |     sprintf (str_buf, "%s already exists. Do you still want to propagate it?", pfp->name);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 52 and 351 bytes into a destination of size 300
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_FileOpenSpecial’:
ingenwin.c:3290:13: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3290 |    slp_list=Ing_MakeSlpList(NULL, n/2, ivals, strand, igvp->bsp->id);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:3255:17: note: ‘strand’ was declared here
 3255 |    Uint1        strand;
      |                 ^~~~~~
ingenwin.c: In function ‘Ing_KozakProc’:
ingenwin.c:1048:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1048 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:1006:22: note: ‘ReportW’ was declared here
 1006 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_SignalPeptideProc’:
ingenwin.c:1099:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1099 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:1057:22: note: ‘ReportW’ was declared here
 1057 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_RepeatsProc’:
ingenwin.c:997:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  997 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:955:22: note: ‘ReportW’ was declared here
  955 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_PolyAProc’:
ingenwin.c:946:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  946 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:904:22: note: ‘ReportW’ was declared here
  904 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_CpGProc’:
ingenwin.c:895:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  895 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:857:22: note: ‘ReportW’ was declared here
  857 |   WindoW             ReportW;
      |                      ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macrodlg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from macrodlg.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
macrodlg.c: In function ‘ExistingTextDialog’:
macrodlg.c:1959:22: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable]
 1959 |   PrompT             ppt;
      |                      ^~~
macrodlg.c: In function ‘EndDistanceToDialog’:
macrodlg.c:3076:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3076 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c:3082:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3082 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c:3088:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3088 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c: In function ‘SourceQualChoiceDialog’:
macrodlg.c:3757:48: warning: variable ‘b4’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                                ^~
macrodlg.c:3757:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                     ^~
macrodlg.c:3757:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                 ^~
macrodlg.c:3757:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                             ^~
macrodlg.c: In function ‘SourceConstraintDialog’:
macrodlg.c:3995:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                                     ^~
macrodlg.c:3995:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                                 ^~
macrodlg.c:3995:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                             ^~
macrodlg.c: In function ‘CDSGeneProtQualConstraintDialog’:
macrodlg.c:4309:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                                     ^~
macrodlg.c:4309:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                                 ^~
macrodlg.c:4309:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                             ^~
macrodlg.c: In function ‘QuantityConstraintToDialog’:
macrodlg.c:7368:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 7368 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
macrodlg.c:7373:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 7373 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
macrodlg.c:7378:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 7378 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
macrodlg.c: In function ‘TestApplyActionDialog’:
macrodlg.c:12965:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
12965 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘TestEditActionDialog’:
macrodlg.c:13170:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
13170 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘TestRemoveOutsideActionDialog’:
macrodlg.c:13328:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
13328 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘ApplyFeatureActionToDialog’:
macrodlg.c:15186:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
15186 |         sprintf (num, "%d^", action->location->data.intvalue);
      |                        ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                         |                          |
      |                         int                        Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c:15188:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
15188 |         sprintf (num, "%d", action->location->data.intvalue + 1);
      |                        ~^   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                         |                                   |
      |                         int                                 Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c: In function ‘AddMacroActions’:
macrodlg.c:20523:25: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
20523 |   Boolean               rval = FALSE;
      |                         ^~~~
macrodlg.c: In function ‘PointerToSampleDialog’:
macrodlg.c:20659:19: warning: variable ‘max_char_per_line’ set but not used [-Wunused-but-set-variable]
20659 |   Int4            max_char_per_line;
      |                   ^~~~~~~~~~~~~~~~~
macrodlg.c: In function ‘SampleDialogCopy’:
macrodlg.c:20779:53: warning: variable ‘last_col’ set but not used [-Wunused-but-set-variable]
20779 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                                     ^~~~~~~~
macrodlg.c:20779:42: warning: variable ‘first_col’ set but not used [-Wunused-but-set-variable]
20779 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                          ^~~~~~~~~
macrodlg.c: In function ‘SingleMacroAcceptButton’:
macrodlg.c:22071:33: warning: variable ‘num_features’ set but not used [-Wunused-but-set-variable]
22071 |   Int4              num_fields, num_features;
      |                                 ^~~~~~~~~~~~
macrodlg.c:22071:21: warning: variable ‘num_fields’ set but not used [-Wunused-but-set-variable]
22071 |   Int4              num_fields, num_features;
      |                     ^~~~~~~~~~
macrodlg.c: In function ‘LaunchMacroTemplateEditor’:
macrodlg.c:23785:23: warning: variable ‘bfp’ set but not used [-Wunused-but-set-variable]
23785 |   BaseFormPtr         bfp;
      |                       ^~~
macrodlg.c: In function ‘SearchFuncToDialog’:
macrodlg.c:25755:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
25755 |       sprintf (buf, "%d", func->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~~
      |                       |             |
      |                       int           Nlm_Int8 {aka long long int}
      |                      %lld
macrodlg.c:25776:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
25776 |       sprintf (buf, "%d", func->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~~
      |                       |             |
      |                       int           Nlm_Int8 {aka long long int}
      |                      %lld
At top level:
macrodlg.c:20095:13: warning: ‘ChangeMacroActionPopup’ defined but not used [-Wunused-function]
20095 | static void ChangeMacroActionPopup (LisT t)
      |             ^~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:20038:13: warning: ‘GetPopupChoiceForActionChoice’ defined but not used [-Wunused-function]
20038 | static Int2 GetPopupChoiceForActionChoice (Uint1 action_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:19715:13: warning: ‘GetCategoryForActionChoice’ defined but not used [-Wunused-function]
19715 | static Int2 GetCategoryForActionChoice (Uint1 action_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:19698:14: warning: ‘GetActionChoiceForCategoryPopupChoice’ defined but not used [-Wunused-function]
19698 | static Uint1 GetActionChoiceForCategoryPopupChoice (Int2 category, Int2 popup_choice)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c: In function ‘ActionToSingleMacroActionForm’:
macrodlg.c:22273:30: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
22273 |   Show (frm->action_dlgs[val - 1]);
      |                          ~~~~^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF biosrc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/biosrc.h:48,
                 from biosrc.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
biosrc.c: In function ‘CreateSimpleBioSourceDialog’:
biosrc.c:2455:18: warning: variable ‘indexerVersion’ set but not used [-Wunused-but-set-variable]
 2455 |   Boolean        indexerVersion;
      |                  ^~~~~~~~~~~~~~
biosrc.c: In function ‘CreateBioSourceDialog’:
biosrc.c:3615:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
 3615 |   PrompT         y;
      |                  ^
At top level:
biosrc.c:3291:26: warning: ‘EnumListFromQualNameAssoc’ defined but not used [-Wunused-function]
 3291 | static EnumFieldAssocPtr EnumListFromQualNameAssoc (Nlm_QualNameAssocPtr qp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:3100:16: warning: ‘SubsourceDialogToSubSourcePtr’ defined but not used [-Wunused-function]
 3100 | static Pointer SubsourceDialogToSubSourcePtr (DialoG d)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2677:13: warning: ‘SubSourcePtrToSubsourceDialog’ defined but not used [-Wunused-function]
 2677 | static void SubSourcePtrToSubsourceDialog (DialoG d, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2617:16: warning: ‘OrgmodDialogToOrgModPtr’ defined but not used [-Wunused-function]
 2617 | static Pointer OrgmodDialogToOrgModPtr (DialoG d)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2568:13: warning: ‘OrgModPtrToOrgmodDialog’ defined but not used [-Wunused-function]
 2568 | static void OrgModPtrToOrgmodDialog (DialoG d, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdrgn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/cdrgn.h:89,
                 from cdrgn.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdrgn.c: In function ‘SetBestProteinFeature’:
cdrgn.c:1003:21: warning: unused variable ‘prp’ [-Wunused-variable]
 1003 |     ProtRefPtr      prp;
      |                     ^~~
cdrgn.c: In function ‘CdRegionPtrToForm’:
cdrgn.c:1050:19: warning: unused variable ‘vnp’ [-Wunused-variable]
 1050 |   ValNodePtr      vnp;
      |                   ^~~
cdrgn.c: In function ‘ProductToSeqLocPtr’:
cdrgn.c:1293:19: warning: variable ‘rfp’ set but not used [-Wunused-but-set-variable]
 1293 |   RnaFormPtr      rfp = NULL;
      |                   ^~~
cdrgn.c: In function ‘CreateCodeBreakAlist’:
cdrgn.c:1926:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 1926 |   Uint1            first;
      |                    ^~~~~
cdrgn.c: In function ‘CodeBreakPtrToCodeBreakDialog’:
cdrgn.c:1977:19: warning: variable ‘aa’ set but not used [-Wunused-but-set-variable]
 1977 |   Uint1           aa;
      |                   ^~
cdrgn.c: In function ‘PopulateAAPopup’:
cdrgn.c:7041:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 7041 |   Uint1            first;
      |                    ^~~~~
cdrgn.c: In function ‘RnaRefPtrToForm’:
cdrgn.c:7557:17: warning: unused variable ‘is_iMet’ [-Wunused-variable]
 7557 |   Boolean       is_iMet = FALSE;
      |                 ^~~~~~~
cdrgn.c:7556:17: warning: unused variable ‘is_fMet’ [-Wunused-variable]
 7556 |   Boolean       is_fMet = FALSE;
      |                 ^~~~~~~
At top level:
cdrgn.c:6851:13: warning: ‘ConvertRnaRefNameToProductQual’ defined but not used [-Wunused-function]
 6851 | static void ConvertRnaRefNameToProductQual (SeqFeatPtr sfp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdrgn.c:6789:13: warning: ‘RemoveQualByName’ defined but not used [-Wunused-function]
 6789 | static void RemoveQualByName (SeqFeatPtr sfp, CharPtr qual_name)
      |             ^~~~~~~~~~~~~~~~
cdrgn.c:6770:18: warning: ‘FindOrAddQual’ defined but not used [-Wunused-function]
 6770 | static GBQualPtr FindOrAddQual (SeqFeatPtr sfp, CharPtr qual_name)
      |                  ^~~~~~~~~~~~~
cdrgn.c:6323:15: warning: ‘CreateMrnaUserObjectDialog’ defined but not used [-Wunused-function]
 6323 | static DialoG CreateMrnaUserObjectDialog (GrouP h, CharPtr label, SeqEntryPtr sep, BaseFormPtr bfp)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~
cdrgn.c:6246:14: warning: ‘check_rna_type’ defined but not used [-Wunused-function]
 6246 | static Uint1 check_rna_type (Uint1 type)
      |              ^~~~~~~~~~~~~~
cdrgn.c:3183:13: warning: ‘SetComment’ defined but not used [-Wunused-function]
 3183 | static void SetComment (CharPtr new_comment, WindoW w)
      |             ^~~~~~~~~~
cdrgn.c:2149:13: warning: ‘AccessionToGi’ defined but not used [-Wunused-function]
 2149 | static Int4 AccessionToGi (CharPtr string)
      |             ^~~~~~~~~~~~~
cdrgn.c:961:13: warning: ‘FormToProtRef’ defined but not used [-Wunused-function]
  961 | static void FormToProtRef(CdRgnFormPtr cfp, ProtRefPtr prp)
      |             ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF import.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from import.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
import.c:3776:22: warning: ‘kDoNotEditTitle’ initialized and declared ‘extern’
 3776 | extern const CharPtr kDoNotEditTitle = "You are manually editing a title. If you continue, the title will not be automatically updated if the taxonomy information changes. Are you sure you want to do this? It is a very bad idea.";
      |                      ^~~~~~~~~~~~~~~
import.c: In function ‘ExpandSecondaries’:
import.c:3394:30: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=]
 3394 |           sprintf (numbers, "%*ld", digits, (long) idx);
      |                              ^~~~
import.c:3394:29: note: directive argument in the range [1, 2147483647]
 3394 |           sprintf (numbers, "%*ld", digits, (long) idx);
      |                             ^~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from import.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pubdesc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pubdesc.c: In function ‘MakeReplaceAuthorsForm’:
pubdesc.c:4303:24: warning: variable ‘pepp’ set but not used [-Wunused-but-set-variable]
 4303 |   PubdescEditProcsPtr  pepp;
      |                        ^~~~
pubdesc.c: In function ‘DisplayDocSum’:
pubdesc.c:4865:9: warning: variable ‘lineheight’ set but not used [-Wunused-but-set-variable]
 4865 |   Int2  lineheight;
      |         ^~~~~~~~~~
At top level:
pubdesc.c:5377:13: warning: ‘Quit’ defined but not used [-Wunused-function]
 5377 | static void Quit (ButtoN b)
      |             ^~~~
pubdesc.c:5113:14: warning: ‘AddAll’ defined but not used [-Wunused-function]
 5113 | static  void AddAll(Entrez2RequestPtr e2rp, CharPtr term, Boolean is_1st)
      |              ^~~~~~
pubdesc.c: In function ‘SendQuery’:
pubdesc.c:5096:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5096 |       sprintf (year_buf, "%d", year - 1);
      |                             ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pubdesc.c:5099:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5099 |       sprintf (year_buf, "%d", year);
      |                             ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pubdesc.c:5102:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5102 |       sprintf (year_buf, "%d", year + 1);
      |                             ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsub.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/seqsub.h:58,
                 from seqsub.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqsub.c: In function ‘SeqSubmitFromTemplateEditor’:
seqsub.c:3250:20: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable]
 3250 |   ObjMgrDataPtr    omdp;
      |                    ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mapgene.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from mapgene.c:2:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapgene.c: In function ‘load_new_align’:
mapgene.c:79:17: warning: variable ‘match_slp’ set but not used [-Wunused-but-set-variable]
   79 |  SeqLocPtr slp, match_slp, t_slp;
      |                 ^~~~~~~~~
mapgene.c: In function ‘figure_loc_by_position’:
mapgene.c:1039:20: warning: variable ‘center’ set but not used [-Wunused-but-set-variable]
 1039 |  Int4 start, stop, center;
      |                    ^~~~~~
mapgene.c: In function ‘cvt_loc_for_single_gene’:
mapgene.c:1958:29: warning: variable ‘p_align_offset’ set but not used [-Wunused-but-set-variable]
 1958 |  Int4 offset, align_offset, p_align_offset;
      |                             ^~~~~~~~~~~~~~
mapgene.c:1957:7: warning: unused variable ‘shift’ [-Wunused-variable]
 1957 |  Int4 shift = 0;
      |       ^~~~~
mapgene.c: In function ‘print_header_for_center’:
mapgene.c:2693:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable]
 2693 |  CharPtr link;
      |          ^~~~
mapgene.c: In function ‘PrintGeneticMarkerForOneMap’:
mapgene.c:3635:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable]
 3635 |  CharPtr link;
      |          ^~~~
At top level:
mapgene.c:3207:16: warning: ‘convert_center_name_to_gifname’ defined but not used [-Wunused-function]
 3207 | static Boolean convert_center_name_to_gifname (CharPtr center_name, CharPtr gif_name)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mapgene.c:1788:13: warning: ‘adjust_slp_list’ defined but not used [-Wunused-function]
 1788 | static void adjust_slp_list(ValNodePtr slp_list)
      |             ^~~~~~~~~~~~~~~
mapgene.c:1748:16: warning: ‘merge_slp_list’ defined but not used [-Wunused-function]
 1748 | static Boolean merge_slp_list(ValNodePtr PNTR gene_slp_list, ValNodePtr slp_list)
      |                ^~~~~~~~~~~~~~
mapgene.c:1280:13: warning: ‘change_anchor_to_front’ defined but not used [-Wunused-function]
 1280 | static void change_anchor_to_front(ValNodePtr msp_list, SeqIdPtr anchor_id)
      |             ^~~~~~~~~~~~~~~~~~~~~~
mapgene.c:200:13: warning: ‘get_center_pointer’ defined but not used [-Wunused-function]
  200 | static Int4 get_center_pointer(SeqLocPtr slp)
      |             ^~~~~~~~~~~~~~~~~~
mapgene.c:27:13: warning: ‘print_this_id’ defined but not used [-Wunused-function]
   27 | static void print_this_id (SeqIdPtr sip)
      |             ^~~~~~~~~~~~~
mapgene.c: In function ‘PrintHTMLContigAlign.constprop’:
mapgene.c:2798:30: warning: ‘%s’ directive writing up to 30 bytes into a region of size 25 [-Wformat-overflow=]
 2798 |    sprintf(link_name, "CONTIG%s", alpha_name);
      |                              ^~   ~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from mapgene.c:2:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 37 bytes into a destination of size 31
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mapgene.c: In function ‘PrintContigForOneMap’:
mapgene.c:3126:2: warning: ‘yac_num’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3126 |  for(i = 0; i<num; ++i)
      |  ^~~
mapgene.c:3152:7: note: ‘yac_num’ was declared here
 3152 |  Int4 yac_num;
      |       ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prtgene.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/tofile.h:66,
                 from ../include/prtgene.h:3,
                 from prtgene.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prtgene.c: In function ‘print_sfp_ext’:
prtgene.c:108:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  108 |      if(ufp->choice == 2) /*integer */
      |      ^~
prtgene.c:110:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  110 |       print_store_buf(temp, buf, buf_size, &len, fp);
      |       ^~~~~~~~~~~~~~~
prtgene.c: In function ‘print_store_for_html’:
prtgene.c:749:7: warning: variable ‘white_sp’ set but not used [-Wunused-but-set-variable]
  749 |  Char white_sp;
      |       ^~~~~~~~
prtgene.c: In function ‘PrintSequenceToFile.isra’:
prtgene.c:950:28: warning: ‘ (bp) on the genome’ directive writing 19 bytes into a region of size between 16 and 96 [-Wformat-overflow=]
  950 |    sprintf(temp, ": %s - %s (bp) on the genome", temp_1, temp_2);
      |                            ^~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/tofile.h:66,
                 from ../include/prtgene.h:3,
                 from prtgene.c:1:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 25 and 105 bytes into a destination of size 101
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbidesk.a
ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbidesk.a ../lib
ranlib ../lib/libncbidesk.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvclick.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvclick.c:248:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvclick.c: In function ‘DDV_SendBSPSelectMsg_OLD’:
ddvclick.c:979:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
  979 | Boolean     bDeselectAll=TRUE;
      |             ^~~~~~~~~~~~
ddvclick.c: In function ‘DDV_SendBSPSelectMsg’:
ddvclick.c:1090:18: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
 1090 |   Boolean        bDeselectAll=TRUE;
      |                  ^~~~~~~~~~~~
ddvclick.c: In function ‘DDV_DragProc’:
ddvclick.c:2013:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable]
 2013 | ParaGPtr    cur_pgp=NULL;
      |             ^~~~~~~
ddvclick.c: In function ‘DDV_HoldProc’:
ddvclick.c:2494:13: warning: unused variable ‘Scroll’ [-Wunused-variable]
 2494 | Boolean     Scroll=FALSE;
      |             ^~~~~~
ddvclick.c:2490:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable]
 2490 | ParaGPtr    cur_pgp=NULL;
      |             ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
ddvclick.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvclick.c:1823:13: warning: ‘EraseOutline’ defined but not used [-Wunused-function]
 1823 | static void EraseOutline(PaneL p) {
      |             ^~~~~~~~~~~~
ddvclick.c:1811:16: warning: ‘RectanglesAreSame’ defined but not used [-Wunused-function]
 1811 | static Boolean RectanglesAreSame(RecT rc1, RecT rc2) {
      |                ^~~~~~~~~~~~~~~~~
ddvclick.c:970:13: warning: ‘DDV_SendBSPSelectMsg_OLD’ defined but not used [-Wunused-function]
  970 | static void DDV_SendBSPSelectMsg_OLD(DdvMainPtr dmp,Int4 bsp_coord,Int4 SeqAlign_coord,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c:611:13: warning: ‘DDV_GetSeqAlignCoordGivenCol’ defined but not used [-Wunused-function]
  611 | static Int4 DDV_GetSeqAlignCoordGivenCol(DdvMainPtr dmp, Int4 Disp_coord) {
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c: In function ‘DDV_GetSeqNameGivenRow’:
ddvclick.c:956:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  956 |   if (!sip)
      |      ^
ddvclick.c: In function ‘DDV_ReleaseProc’:
ddvclick.c:1127:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1127 |   slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c:1091:18: note: ‘pgp’ was declared here
 1091 |   ParaGPtr       pgp;
      |                  ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvgraph.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvgraph.c:210:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvgraph.c: In function ‘DDV_DrawSequence’:
ddvgraph.c:701:31: warning: unused variable ‘pos’ [-Wunused-variable]
  701 | Int2            decal=1,i,x,y,pos=0;
      |                               ^~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
ddvgraph.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvopen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvopen.c:372:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvopen.c: In function ‘DDV_GetAndCheckSeqAlign’:
ddvopen.c:1739:8: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable]
 1739 | Uint2  nRet=DVV_MSG_M_OK;
      |        ^~~~
ddvopen.c: In function ‘DDV_FOpenAcceptProc’:
ddvopen.c:1932:11: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable]
 1932 | Uint2     nRet=DVV_MSG_M_OK,The_entityID;
      |           ^~~~
ddvopen.c: In function ‘DDV_NetOpen_okProc’:
ddvopen.c:2141:8: warning: variable ‘AccessType’ set but not used [-Wunused-but-set-variable]
 2141 | Int2   AccessType,procval;
      |        ^~~~~~~~~~
ddvopen.c: In function ‘DDV_StartMainWin_Slave’:
ddvopen.c:2411:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 2411 |     else
      |     ^~~~
ddvopen.c:2417:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 2417 |  if (!w) return(NULL);
      |  ^~
ddvopen.c: In function ‘DDV_ImportBioseqDlg’:
ddvopen.c:2819:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 2819 |     ButtoN b;
      |            ^
ddvopen.c: In function ‘DDV_HideDlg’:
ddvopen.c:3135:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 3135 |     ButtoN b;
      |            ^
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from ddvopen.c:376:
ddvopen.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from ddvopen.c:376:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvopen.c:2111:16: warning: ‘DDV_IsInt’ defined but not used [-Wunused-function]
 2111 | static Boolean DDV_IsInt(CharPtr szAccess)
      |                ^~~~~~~~~
ddvopen.c:1285:13: warning: ‘DDV_NoConvert’ defined but not used [-Wunused-function]
 1285 | static void DDV_NoConvert(ButtoN g) {
      |             ^~~~~~~~~~~~~
ddvopen.c:1272:13: warning: ‘DDV_Convert’ defined but not used [-Wunused-function]
 1272 | static void DDV_Convert(ButtoN g) {
      |             ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvpanel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvpanel.c:389:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvpanel.c: In function ‘DDV_CreateViewerPanel’:
ddvpanel.c:1177:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable]
 1177 | Int2   cxChar,cyChar;
      |        ^~~~~~
ddvpanel.c: In function ‘DDV_DispStyles_OkProc’:
ddvpanel.c:1543:21: warning: unused variable ‘szBuf’ [-Wunused-variable]
 1543 | Char                szBuf[15]={""};
      |                     ^~~~~
ddvpanel.c: In function ‘DDV_ExportTexte’:
ddvpanel.c:2799:40: warning: variable ‘browse’ set but not used [-Wunused-but-set-variable]
 2799 | ButtoN        chk2,chk3,chk4,chk5,chk6,browse,ok;
      |                                        ^~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
ddvpanel.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3377:13: warning: ‘write_annot’ defined but not used [-Wunused-function]
 3377 | static void write_annot(SeqAlignPtr align)
      |             ^~~~~~~~~~~
ddvpanel.c:3296:13: warning: ‘DDV_MoveRightBoundaryRight’ defined but not used [-Wunused-function]
 3296 | static void DDV_MoveRightBoundaryRight(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3290:13: warning: ‘DDV_MoveRightBoundaryLeft’ defined but not used [-Wunused-function]
 3290 | static void DDV_MoveRightBoundaryLeft(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3284:13: warning: ‘DDV_MoveLeftBoundaryRight’ defined but not used [-Wunused-function]
 3284 | static void DDV_MoveLeftBoundaryRight(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3278:13: warning: ‘DDV_MoveLeftBoundaryLeft’ defined but not used [-Wunused-function]
 3278 | static void DDV_MoveLeftBoundaryLeft(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3272:13: warning: ‘DDV_MoveRowRight’ defined but not used [-Wunused-function]
 3272 | static void DDV_MoveRowRight(IteM i)
      |             ^~~~~~~~~~~~~~~~
ddvpanel.c:3266:13: warning: ‘DDV_MoveRowLeft’ defined but not used [-Wunused-function]
 3266 | static void DDV_MoveRowLeft(IteM i)
      |             ^~~~~~~~~~~~~~~
ddvpanel.c:3024:13: warning: ‘DDV_DeleteRow’ defined but not used [-Wunused-function]
 3024 | static void DDV_DeleteRow(IteM i)
      |             ^~~~~~~~~~~~~
ddvpanel.c: In function ‘DDV_SortPGPLineNum’:
ddvpanel.c:2441:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2441 |   n+=pgp->nLines;
      |      ~~~^~~~~~~~
rm -f libddvlib.a
ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libddvlib.a ../lib
ranlib ../lib/libddvlib.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF corematx.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corematx.c:135:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dvncode.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from dvncode.c:69:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb1.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb1.c: In function ‘BiostrucAsnRead’:
objmmdb1.c:90:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   90 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucIdFree’:
objmmdb1.c:323:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  323 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucIdAsnRead’:
objmmdb1.c:358:12: warning: unused variable ‘isError’ [-Wunused-variable]
  358 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucSetAsnRead’:
objmmdb1.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucAnnotSetAsnRead’:
objmmdb1.c:716:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  716 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucResidueGraphSetAsnRead’:
objmmdb1.c:885:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  885 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucDescrFree’:
objmmdb1.c:1015:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1015 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucDescrAsnRead’:
objmmdb1.c:1059:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1059 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucHistoryAsnRead’:
objmmdb1.c:1270:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1270 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1269 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucReplaceAsnRead’:
objmmdb1.c:1450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1450 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:1449:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1449 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseFree’:
objmmdb1.c:1618:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1618 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucSourceAsnRead’:
objmmdb1.c:1652:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1652 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseAsnRead’:
objmmdb1.c:1753:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1753 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucGraphAsnRead’:
objmmdb1.c:2001:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2001 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiomolDescrFree’:
objmmdb1.c:2139:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2139 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiomolDescrAsnRead’:
objmmdb1.c:2189:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2189 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueGraphAsnRead’:
objmmdb1.c:2446:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2446 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘MoleculeGraphAsnRead’:
objmmdb1.c:2654:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2654 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘InterResidueBondAsnRead’:
objmmdb1.c:2856:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2856 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:2855:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2855 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueAsnRead’:
objmmdb1.c:3037:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3037 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3036:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3036 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueGraphPntrFree’:
objmmdb1.c:3177:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3177 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’:
objmmdb1.c:3212:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3212 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucGraphPntrAsnRead’:
objmmdb1.c:3399:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3399 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3398:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3398 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucResidueGraphSetPntrAsnRead’:
objmmdb1.c:3565:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3565 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3564:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3564 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomAsnRead’:
objmmdb1.c:3732:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3732 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘IntraResidueBondAsnRead’:
objmmdb1.c:3924:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3924 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3923:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3923 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ChiralCenterAsnRead’:
objmmdb1.c:4097:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4097 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:4096:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4096 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomPntrAsnRead’:
objmmdb1.c:4286:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4286 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:4285:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4285 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomPntrSetAsnRead’:
objmmdb1.c:4441:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4441 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:73,
                 from objmmdb1.c:5:
objmmdb1.c: At top level:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objmmdb1.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objmmdb1.c: In function ‘BiostrucIdAsnRead’:
objmmdb1.c:411:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  411 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiostrucDescrAsnRead’:
objmmdb1.c:1126:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1126 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiomolDescrAsnRead’:
objmmdb1.c:2284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2284 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiostrucSourceAsnRead’:
objmmdb1.c:1802:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1802 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c:1752:10: note: ‘choice’ was declared here
 1752 |    Uint1 choice;
      |          ^~~~~~
objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’:
objmmdb1.c:3265:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3265 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb2.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb2.c: In function ‘BiostrucModelAsnRead’:
objmmdb2.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   88 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ModelDescrFree’:
objmmdb2.c:242:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  242 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘ModelDescrAsnRead’:
objmmdb2.c:289:12: warning: unused variable ‘isError’ [-Wunused-variable]
  289 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘ModelSpaceAsnRead’:
objmmdb2.c:512:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  512 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:511:12: warning: unused variable ‘isError’ [-Wunused-variable]
  511 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘Coordinates_coordinatesFree’:
objmmdb2.c:709:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  709 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’:
objmmdb2.c:743:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  743 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘Coordinates_coordinatesAsnRead’:
objmmdb2.c:831:12: warning: unused variable ‘isError’ [-Wunused-variable]
  831 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘ReferenceFrameAsnRead’:
objmmdb2.c:1063:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1063 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:1062:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1062 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘CoordinatesFree’:
objmmdb2.c:1193:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1193 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘CoordinatesAsnRead’:
objmmdb2.c:1231:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘AtomicCoordinatesAsnRead’:
objmmdb2.c:1420:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1420 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘Surface_surfaceFree’:
objmmdb2.c:1640:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1640 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’:
objmmdb2.c:1686:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1686 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:1685:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1685 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘Surface_surfaceAsnRead’:
objmmdb2.c:1766:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1766 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘DensityCoordinatesAsnRead’:
objmmdb2.c:2030:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2030 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ModelSpacePointsAsnRead’:
objmmdb2.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2263 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsFree’:
objmmdb2.c:2404:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2404 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’:
objmmdb2.c:2439:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2439 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘AtomicOccupanciesAsnRead’:
objmmdb2.c:2615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2615 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AlternateConformationIdsAsnRead’:
objmmdb2.c:2760:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2760 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ConformationEnsembleAsnRead’:
objmmdb2.c:2890:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2890 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘IsotropicTemperatureFactorsAsnRead’:
objmmdb2.c:3054:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3054 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AnisotropicTemperatureFactorsAsnRead’:
objmmdb2.c:3221:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3221 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘TMeshAsnRead’:
objmmdb2.c:3426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3426 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘TrianglesAsnRead’:
objmmdb2.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3626 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb2.c:5:
objmmdb2.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb2.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objmmdb2.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objmmdb2.c: In function ‘ModelDescrAsnRead’:
objmmdb2.c:366:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  366 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘CoordinatesAsnRead’:
objmmdb2.c:1281:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1281 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’:
objmmdb2.c:2485:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2485 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’:
objmmdb2.c:877:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  877 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c:830:10: note: ‘choice’ was declared here
  830 |    Uint1 choice;
      |          ^~~~~~
objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’:
objmmdb2.c:1828:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1828 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c:1765:10: note: ‘choice’ was declared here
 1765 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb3.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb3.c: In function ‘BiostrucFeatureSetAsnRead’:
objmmdb3.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphPntrsFree’:
objmmdb3.c:220:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  220 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘AtomPntrsAsnRead’:
objmmdb3.c:443:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  443 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphAlignmentAsnRead’:
objmmdb3.c:626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  626 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphInteractionAsnRead’:
objmmdb3.c:824:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  824 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘SphereAsnRead’:
objmmdb3.c:1024:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1024 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ConeAsnRead’:
objmmdb3.c:1192:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1192 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘CylinderAsnRead’:
objmmdb3.c:1372:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1372 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BrickAsnRead’:
objmmdb3.c:1557:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1557 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘TransformAsnRead’:
objmmdb3.c:1796:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1796 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucFeatureSetDescrFree’:
objmmdb3.c:1921:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1921 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘Location_locationFree’:
objmmdb3.c:2161:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2161 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘BiostrucFeatureAsnRead’:
objmmdb3.c:2206:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2206 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘Property_propertyFree’:
objmmdb3.c:2722:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2722 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘ColorPropAsnRead’:
objmmdb3.c:2798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2798 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘CameraAsnRead’:
objmmdb3.c:2986:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2986 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucScriptAsnRead’:
objmmdb3.c:3171:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3171 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionPntrsAsnRead’:
objmmdb3.c:3330:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3330 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionSimilarityAsnRead’:
objmmdb3.c:3648:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3648 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘OtherFeatureAsnRead’:
objmmdb3.c:3825:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3825 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucMoleculePntrAsnRead’:
objmmdb3.c:3999:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3999 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘MoleculePntrsAsnRead’:
objmmdb3.c:4342:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4342 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ResidueExplicitPntrsAsnRead’:
objmmdb3.c:4505:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4505 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ResidueIntervalPntrAsnRead’:
objmmdb3.c:4673:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4673 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionCoordinatesAsnRead’:
objmmdb3.c:4845:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4845 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionBoundaryFree’:
objmmdb3.c:4981:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4981 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘AlignStatsAsnRead’:
objmmdb3.c:5212:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5212 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RealValueAsnRead’:
objmmdb3.c:5454:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5454 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ModelSpacePointAsnRead’:
objmmdb3.c:5615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5615 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘MoveFree’:
objmmdb3.c:5759:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 5759 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘RotMatrixAsnRead’:
objmmdb3.c:5967:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5967 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘TransMatrixAsnRead’:
objmmdb3.c:6200:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6200 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘GLMatrixAsnRead’:
objmmdb3.c:6379:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6379 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucScriptStepAsnRead’:
objmmdb3.c:6680:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6680 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb3.c:5:
objmmdb3.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb3.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from objmmdb3.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
objmmdb3.c: In function ‘ChemGraphPntrsAsnRead’:
objmmdb3.c:307:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  307 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘BiostrucFeatureSetDescrAsnRead’:
objmmdb3.c:2024:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2024 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘ResiduePntrsAsnRead’:
objmmdb3.c:4213:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4213 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘RegionBoundaryAsnRead’:
objmmdb3.c:5075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5075 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘MoveAsnRead’:
objmmdb3.c:5839:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5839 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘RegionPntrsAsnRead’:
objmmdb3.c:3464:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3464 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:3409:10: note: ‘choice’ was declared here
 3409 |    Uint1 choice;
      |          ^~~~~~
objmmdb3.c: In function ‘BiostrucFeatureAsnRead’:
objmmdb3.c:2691:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2691 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:2626:10: note: ‘choice’ was declared here
 2626 |    Uint1 choice;
      |          ^~~~~~
objmmdb3.c:2370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2370 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:2308:10: note: ‘choice’ was declared here
 2308 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcn3d.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objcn3d.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleDictionaryAsnRead’:
objcn3d.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dUserAnnotationsAsnRead’:
objcn3d.c:251:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  251 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dColorAsnRead’:
objcn3d.c:415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  415 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:414:12: warning: unused variable ‘isError’ [-Wunused-variable]
  414 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dBackboneStyleAsnRead’:
objcn3d.c:605:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  605 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:604:12: warning: unused variable ‘isError’ [-Wunused-variable]
  604 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dGeneralStyleAsnRead’:
objcn3d.c:789:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  789 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:788:12: warning: unused variable ‘isError’ [-Wunused-variable]
  788 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dBackboneLabelStyleAsnRead’:
objcn3d.c:972:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  972 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:971:12: warning: unused variable ‘isError’ [-Wunused-variable]
  971 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleSettingsAsnRead’:
objcn3d.c:1175:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1175 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1174:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1174 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleSettingsSetAsnRead’:
objcn3d.c:1578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1578 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dStyleTableItemAsnRead’:
objcn3d.c:1707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1707 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1706:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1706 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dResidueRangeAsnRead’:
objcn3d.c:1872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1872 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1871:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1871 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dMoleculeLocationAsnRead’:
objcn3d.c:2035:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2035 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dObjectLocationAsnRead’:
objcn3d.c:2198:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2198 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dUserAnnotationAsnRead’:
objcn3d.c:2363:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2363 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dGLMatrixAsnRead’:
objcn3d.c:2555:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2555 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:2554:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2554 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dVectorAsnRead’:
objcn3d.c:2843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2843 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:2842:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2842 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dViewSettingsAsnRead’:
objcn3d.c:3016:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3016 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:3015:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3015 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from ../include/mapcn3d.h:8,
                 from objcn3d.c:5:
objcn3d.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapcn3d.h:8,
                 from objcn3d.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi.c:116:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi.c: In function ‘MakeAModelstruc’:
mmdbapi.c:192:11: warning: unused variable ‘iCount’ [-Wunused-variable]
  192 |     Int4  iCount = 0;
      |           ^~~~~~
mmdbapi.c:189:11: warning: unused variable ‘pdnmsCount’ [-Wunused-variable]
  189 |     PDNMS pdnmsCount = NULL;
      |           ^~~~~~~~~~
mmdbapi.c: In function ‘AddPFBSelect’:
mmdbapi.c:532:11: warning: unused variable ‘pmsdStruc’ [-Wunused-variable]
  532 |     PMSD  pmsdStruc = NULL;
      |           ^~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi1.c: In function ‘FreeAtomicModelAsnLists’:
mmdbapi1.c:1037:21: warning: unused variable ‘pcoThis’ [-Wunused-variable]
 1037 |    CoordinatesPtr   pcoThis = NULL;
      |                     ^~~~~~~
mmdbapi1.c: In function ‘FetchBS’:
mmdbapi1.c:1242:13: warning: unused variable ‘bIsNetwork’ [-Wunused-variable]
 1242 |     Boolean bIsNetwork = FALSE;
      |             ^~~~~~~~~~
mmdbapi1.c: In function ‘FreeSurfaceModelAsnList’:
mmdbapi1.c:1627:16: warning: variable ‘pvnX’ set but not used [-Wunused-but-set-variable]
 1627 |     ValNodePtr pvnX = NULL;
      |                ^~~~
mmdbapi1.c: In function ‘MakeChemGraphNodeList’:
mmdbapi1.c:2343:16: warning: variable ‘pvnThis’ set but not used [-Wunused-but-set-variable]
 2343 |     ValNodePtr pvnThis = NULL;
      |                ^~~~~~~
mmdbapi1.c: In function ‘DoApplyTransform’:
mmdbapi1.c:2573:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2573 |   PMSD pmsdThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c: In function ‘DoReverseTransform’:
mmdbapi1.c:2713:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2713 |   PMSD pmsdThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c: In function ‘InstBSAnnotSet’:
mmdbapi1.c:2860:8: warning: unused variable ‘psfsThis’ [-Wunused-variable]
 2860 |   PSFS psfsThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c:2859:22: warning: unused variable ‘pbsfThis’ [-Wunused-variable]
 2859 |   BiostrucFeaturePtr pbsfThis = NULL;
      |                      ^~~~~~~~
mmdbapi1.c:2855:9: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2855 |   PMSD  pmsdThis = NULL;
      |         ^~~~~~~~
mmdbapi1.c: In function ‘BiosToSeq’:
mmdbapi1.c:2978:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 2978 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c:2967:22: warning: unused variable ‘pbsf’ [-Wunused-variable]
 2967 |   BiostrucFeaturePtr pbsf=NULL;
      |                      ^~~~
mmdbapi1.c: In function ‘fnPBSFtoPSA’:
mmdbapi1.c:3174:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 3174 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’:
mmdbapi1.c:3408:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 3408 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c:3397:22: warning: unused variable ‘pbsf’ [-Wunused-variable]
 3397 |   BiostrucFeaturePtr pbsf=NULL;
      |                      ^~~~
mmdbapi1.c: In function ‘InstallAlignedSlave’:
mmdbapi1.c:3877:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 3877 |    Int2 iTest;
      |         ^~~~~
mmdbapi1.c:3874:9: warning: unused variable ‘psfsThis’ [-Wunused-variable]
 3874 |    PSFS psfsThis = NULL;
      |         ^~~~~~~~
mmdbapi1.c: In function ‘BiostrucAddFeature’:
mmdbapi1.c:4184:11: warning: variable ‘ncbiVast’ set but not used [-Wunused-but-set-variable]
 4184 |   Boolean ncbiVast = FALSE;
      |           ^~~~~~~~
mmdbapi1.c:4182:11: warning: variable ‘pdbFootnote’ set but not used [-Wunused-but-set-variable]
 4182 |   Boolean pdbFootnote  = FALSE;
      |           ^~~~~~~~~~~
mmdbapi1.c:4181:11: warning: variable ‘pdbSite’ set but not used [-Wunused-but-set-variable]
 4181 |   Boolean pdbSite = FALSE;
      |           ^~~~~~~
mmdbapi1.c:4172:15: warning: unused variable ‘pdvnThis’ [-Wunused-variable]
 4172 |   DValNodePtr pdvnThis = NULL;
      |               ^~~~~~~~
mmdbapi1.c: In function ‘BiostrucAsnGet’:
mmdbapi1.c:5289:18: warning: variable ‘aop’ set but not used [-Wunused-but-set-variable]
 5289 |     AsnOptionPtr aop;
      |                  ^~~
mmdbapi1.c: In function ‘BiosToSeq’:
mmdbapi1.c:3083:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3083 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c:3127:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3127 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
mmdbapi1.c: In function ‘fnPBSFtoPSA’:
mmdbapi1.c:3275:52: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3275 |     sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’:
mmdbapi1.c:3515:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3515 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c:3559:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3559 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
mmdbapi1.c: In function ‘InstBSAnnotSet’:
mmdbapi1.c:2885:15: warning: ‘iMMDBId’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2885 |   pdnmsThis = FindLoadedBiostruc(NULL, iMMDBId);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi2.c:159:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi2.c: In function ‘GetAtomLocs’:
mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1471 |      if (pmadThis)
      |         ^
mmdbapi2.c: In function ‘AssignAtomLocId’:
mmdbapi2.c:1537:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1537 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignBackBone’:
mmdbapi2.c:1686:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1686 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignVirtual’:
mmdbapi2.c:1790:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1790 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignIons’:
mmdbapi2.c:1846:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1846 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘MolFromPDBChain’:
mmdbapi2.c:1931:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1931 |     Int2 iTest;
      |          ^~~~~
mmdbapi2.c: In function ‘SeqStringFromMol’:
mmdbapi2.c:1948:9: warning: unused variable ‘iTest’ [-Wunused-variable]
 1948 |    Int4 iTest =0;
      |         ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi3.c:207:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi3.c: In function ‘WritePDBHeader’:
mmdbapi3.c:840:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  840 |     if(org)
      |     ^~
mmdbapi3.c:845:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  845 |         src = orgstring;
      |         ^~~
mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  840 |     if(org)
      |       ^
mmdbapi3.c: In function ‘WritePDBRemarks’:
mmdbapi3.c:1389:8: warning: unused variable ‘len’ [-Wunused-variable]
 1389 |    int len;
      |        ^~~
mmdbapi3.c:1388:9: warning: unused variable ‘pcThis’ [-Wunused-variable]
 1388 |    Char pcThis[81];
      |         ^~~~~~
mmdbapi3.c:1387:21: warning: unused variable ‘pbsdrLast’ [-Wunused-variable]
 1387 |    BiostrucDescrPtr pbsdrLast = NULL;
      |                     ^~~~~~~~~
mmdbapi3.c:1386:21: warning: unused variable ‘pbsdrThis’ [-Wunused-variable]
 1386 |    BiostrucDescrPtr pbsdrThis = NULL;
      |                     ^~~~~~~~~
mmdbapi3.c: In function ‘WritePDBConnect’:
mmdbapi3.c:1610:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1610 |    Int2 iTest;
      |         ^~~~~
mmdbapi3.c: In function ‘WritePDBModelList’:
mmdbapi3.c:1625:10: warning: variable ‘iCount’ set but not used [-Wunused-but-set-variable]
 1625 |     Int4 iCount;
      |          ^~~~~~
mmdbapi3.c: In function ‘WriteKinAtom’:
mmdbapi3.c:2287:11: warning: unused variable ‘pcElName’ [-Wunused-variable]
 2287 |   CharPtr pcElName = NULL;
      |           ^~~~~~~~
mmdbapi3.c: In function ‘WriteFASTAMolecule’:
mmdbapi3.c:3537:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 3537 |    Int4 iTest =0;
      |         ^~~~~
mmdbapi3.c: In function ‘WriteKinAtom’:
mmdbapi3.c:2314:12: warning: ‘iTemp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2314 |         if (iTemp < TempsKine[(iIndex-1)]) return; /* too low */
      |            ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi4.c:106:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi4.c: In function ‘RefreshSurface’:
mmdbapi4.c:147:10: warning: unused variable ‘iVal’ [-Wunused-variable]
  147 |     Int4 iVal = 0;
      |          ^~~~
mmdbapi4.c: In function ‘FreeCoordinatesAsnLists’:
mmdbapi4.c:335:28: warning: variable ‘pdcThis’ set but not used [-Wunused-but-set-variable]
  335 |     DensityCoordinatesPtr  pdcThis = NULL;
      |                            ^~~~~~~
mmdbapi4.c: In function ‘FreeRedundantAsn’:
mmdbapi4.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
mmdbapi4.c:370:11: warning: unused variable ‘pdnmmThis’ [-Wunused-variable]
  370 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
mmdbapi4.c:367:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable]
  367 |     BiostrucModelPtr pbsmThis = NULL;
      |                      ^~~~~~~~
mmdbapi4.c: In function ‘RefreshModelAsnMem’:
mmdbapi4.c:474:13: warning: unused variable ‘iCoordSets’ [-Wunused-variable]
  474 |     Int4    iCoordSets = 0;
      |             ^~~~~~~~~~
mmdbapi4.c:465:20: warning: unused variable ‘pappThis’ [-Wunused-variable]
  465 |     AtomPntrsPtr   pappThis = NULL;
      |                    ^~~~~~~~
mmdbapi4.c:464:27: warning: unused variable ‘pmspThis’ [-Wunused-variable]
  464 |     ModelSpacePointsPtr   pmspThis = NULL;
      |                           ^~~~~~~~
mmdbapi4.c:463:28: warning: unused variable ‘pocThis’ [-Wunused-variable]
  463 |     AtomicOccupanciesPtr   pocThis = NULL;
      |                            ^~~~~~~
mmdbapi4.c:458:34: warning: unused variable ‘paciThis’ [-Wunused-variable]
  458 |     AlternateConformationIdsPtr  paciThis = NULL;
      |                                  ^~~~~~~~
mmdbapi4.c: In function ‘RebuildChemGraphAsn’:
mmdbapi4.c:931:15: warning: unused variable ‘bOK’ [-Wunused-variable]
  931 |     Boolean   bOK = TRUE;
      |               ^~~
mmdbapi4.c: In function ‘WriteASNChemGraphOnly’:
mmdbapi4.c:1192:10: warning: unused variable ‘iHash’ [-Wunused-variable]
 1192 |     Int4 iHash = 0;
      |          ^~~~~
mmdbapi4.c: In function ‘FreeSingleModel’:
mmdbapi4.c:1336:11: warning: unused variable ‘pdnml’ [-Wunused-variable]
 1336 |     PDNML pdnml = NULL;
      |           ^~~~~
mmdbapi4.c:1332:22: warning: unused variable ‘pbsmTemp’ [-Wunused-variable]
 1332 |     BiostrucModelPtr pbsmTemp = NULL;
      |                      ^~~~~~~~
mmdbapi4.c: In function ‘WriteAsnModelList’:
mmdbapi4.c:1505:14: warning: unused variable ‘paioAIP’ [-Wunused-variable]
 1505 |     AsnIoPtr paioAIP = NULL;
      |              ^~~~~~~
mmdbapi4.c:1502:11: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1502 |     PMLD  pmldThis = NULL;
      |           ^~~~~~~~
mmdbapi4.c:1498:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1498 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
mmdbapi4.c:1496:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable]
 1496 |     BiostrucModelPtr pbsmThis = NULL;
      |                      ^~~~~~~~
mmdbapi4.c:1495:17: warning: unused variable ‘pBSThis’ [-Wunused-variable]
 1495 |     BiostrucPtr pBSThis = NULL;
      |                 ^~~~~~~
mmdbapi4.c:1494:13: warning: unused variable ‘bFirst’ [-Wunused-variable]
 1494 |     Boolean bFirst = TRUE;
      |             ^~~~~~
mmdbapi4.c:1493:10: warning: unused variable ‘iTest’ [-Wunused-variable]
 1493 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’:
mmdbapi4.c:1741:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 1741 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi4.c: In function ‘WriteAsnModelList’:
mmdbapi4.c:1632:13: warning: ‘bRet’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1632 |      return bRet;
      |             ^~~~
mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’:
mmdbapi4.c:1828:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 1828 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi4.c:106:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi4.c:1872:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1872 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbentr.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vastsubs.c
vastsubs.c: In function ‘LoadSubsetTable’:
vastsubs.c:212:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  212 |  fscanf(fd, "%d", &ndoms);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:239:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  239 |  fscanf(fd, "%d", &nsubs);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:258:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  258 |   fscanf(fd, "%d", &j);
      |   ^~~~~~~~~~~~~~~~~~~~
vastsubs.c:287:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  287 |   fscanf(fd, "%8c", domid);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:296:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  296 |   fscanf(fd, "%d", &n);
      |   ^~~~~~~~~~~~~~~~~~~~
vastsubs.c:302:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  302 |    fscanf(fd, "%d %d %d", &subset[j], &grps[j], &ranks[j]);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:304:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  304 |   fscanf(fd, "\n");
      |   ^~~~~~~~~~~~~~~~
vastsubs.c:275:31: warning: ‘len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  275 |     SubsetArray[strindex + len++] = ch;
      |                            ~~~^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prunebsc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/prunebsc.h:10,
                 from prunebsc.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prunebsc.c: In function ‘PruneFeatureSet’:
prunebsc.c:220:22: warning: variable ‘bsfpDie’ set but not used [-Wunused-but-set-variable]
  220 |   BiostrucFeaturePtr bsfpDie, bsfp, bsfpnew = NULL;
      |                      ^~~~~~~
prunebsc.c: In function ‘PruneModel’:
prunebsc.c:272:30: warning: variable ‘mcsDie’ set but not used [-Wunused-but-set-variable]
  272 |   ModelCoordinateSetPtr mcs, mcsDie, mcsnew = NULL;
      |                              ^~~~~~
prunebsc.c: In function ‘PruneBiostruc’:
prunebsc.c:559:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  559 |     if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
      |         ^~~
prunebsc.c:574:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  574 |     if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
      |         ^~~
prunebsc.c:663:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  663 |     if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
      |         ^~~
In file included from ../include/ncbi.h:62,
                 from ../include/prunebsc.h:10,
                 from prunebsc.c:34:
../include/ncbistr.h:339:20: warning: ‘feature_name’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  339 | #define StringICmp Nlm_StringICmp
      |                    ^~~~~~~~~~~~~~
prunebsc.c:522:25: note: ‘feature_name’ was declared here
  522 |   CharPtr chnid, hetid, feature_name;
      |                         ^~~~~~~~~~~~
prunebsc.c:649:23: warning: ‘pirbnew’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  649 |         pirbnew->next = pirb;
      |         ~~~~~~~~~~~~~~^~~~~~
prunebsc.c:695:18: warning: ‘mol_id’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  695 |       bsmpHead = PruneModel(bsmp, pvnIds, mol_id);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
prunebsc.c:591:26: warning: ‘currenthet’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  591 |         currenthet->next = het;
      |         ~~~~~~~~~~~~~~~~~^~~~~
prunebsc.c:562:9: warning: ‘chnid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  562 |     if (*chnid == *chain)
      |         ^~~~~~
prunebsc.c:182:7: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  182 |       switch(mtype)
      |       ^~~~~~
prunebsc.c:173:8: note: ‘mtype’ was declared here
  173 |   Int4 mtype, molecule_id;
      |        ^~~~~
prunebsc.c:102:8: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  102 |   Int4 mtype;
      |        ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcdd.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objcdd.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objcdd.c: In function ‘CddIdFree’:
objcdd.c:53:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   53 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘CddIdAsnRead’:
objcdd.c:85:12: warning: unused variable ‘isError’ [-Wunused-variable]
   85 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddIdSetAsnRead’:
objcdd.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  248 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:245:12: warning: unused variable ‘av’ [-Wunused-variable]
  245 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddAsnRead’:
objcdd.c:402:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  402 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddSetAsnRead’:
objcdd.c:798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  798 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:795:12: warning: unused variable ‘av’ [-Wunused-variable]
  795 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddTreeAsnRead’:
objcdd.c:935:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  935 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:934:12: warning: unused variable ‘isError’ [-Wunused-variable]
  934 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddTreeSetAsnRead’:
objcdd.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1147 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1144:12: warning: unused variable ‘av’ [-Wunused-variable]
 1144 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddPrefNodesAsnRead’:
objcdd.c:1281:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1281 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1280:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1280 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddProjectAsnRead’:
objcdd.c:1478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1478 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddOrgRefAsnRead’:
objcdd.c:1668:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1668 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1667:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1667 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddOrgRefSetAsnRead’:
objcdd.c:1838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1838 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1835:12: warning: unused variable ‘av’ [-Wunused-variable]
 1835 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddPrefNodeDescrFree’:
objcdd.c:1932:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1932 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘CddPrefNodeDescrAsnRead’:
objcdd.c:1967:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1967 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddPrefNodeDescrSetAsnRead’:
objcdd.c:2130:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2130 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2127:12: warning: unused variable ‘av’ [-Wunused-variable]
 2127 |    DataVal av;
      |            ^~
objcdd.c: In function ‘GlobalIdAsnRead’:
objcdd.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2263 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2262:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2262 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddRepeatAsnRead’:
objcdd.c:2450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2450 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2449:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2449 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddBookRefAsnRead’:
objcdd.c:2627:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2627 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2626:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2626 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddDescrSetAsnRead’:
objcdd.c:3183:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3183 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:3180:12: warning: unused variable ‘av’ [-Wunused-variable]
 3180 |    DataVal av;
      |            ^~
objcdd.c: In function ‘MatrixAsnRead’:
objcdd.c:3315:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3315 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘TriangleAsnRead’:
objcdd.c:3504:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3504 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘UpdateCommentFree’:
objcdd.c:3641:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3641 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘UpdateCommentAsnRead’:
objcdd.c:3685:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3685 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘UpdateAlignAsnRead’:
objcdd.c:3889:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3889 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘RejectIdAsnRead’:
objcdd.c:4064:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4064 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘FeatureEvidenceFree’:
objcdd.c:4188:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4188 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘FeatureEvidenceAsnRead’:
objcdd.c:4232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘AlignAnnotAsnRead’:
objcdd.c:4437:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4437 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘AlignAnnotSetAsnRead’:
objcdd.c:4606:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4606 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4603:12: warning: unused variable ‘av’ [-Wunused-variable]
 4603 |    DataVal av;
      |            ^~
objcdd.c: In function ‘DomainParentAsnRead’:
objcdd.c:4738:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4738 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4737:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4737 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘SequenceTreeAsnRead’:
objcdd.c:4919:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4919 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4918:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4918 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘AlgorithmTypeAsnRead’:
objcdd.c:5107:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5107 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5106:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5106 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘SeqTreeNodeAsnRead’:
objcdd.c:5410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5410 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5409:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5409 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘Children_footprintAsnRead’:
objcdd.c:5595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5595 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5594:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5594 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘NodeAnnotationAsnRead’:
objcdd.c:5887:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5887 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5886:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5886 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddViewerRectAsnRead’:
objcdd.c:6053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6053 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:6052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddViewerAsnRead’:
objcdd.c:6235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6235 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddScriptAsnRead’:
objcdd.c:6410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6410 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:6409:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6409 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from objcdd.c:6:
objcdd.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from objcdd.c:6:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from objcdd.c:7:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objcdd.c: In function ‘CddIdAsnRead’:
objcdd.c:134:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  134 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘CddPrefNodeDescrAsnRead’:
objcdd.c:2016:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2016 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘CddDescrAsnRead’:
objcdd.c:3007:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3007 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘UpdateCommentAsnRead’:
objcdd.c:3746:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3746 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘FeatureEvidenceAsnRead’:
objcdd.c:4293:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4293 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘SeqTreeNodeAsnRead’:
objcdd.c:5561:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5561 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c:5510:10: note: ‘choice’ was declared here
 5510 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddutil.c:336:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cddutil.c: In function ‘CddGetPmIds’:
cddutil.c:649:17: warning: unused variable ‘bRefOpen’ [-Wunused-variable]
  649 |   Boolean       bRefOpen = FALSE;
      |                 ^~~~~~~~
cddutil.c: In function ‘CddGetAnnotNames’:
cddutil.c:807:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  807 |   ValNodePtr      vnp, vnpHead = NULL;
      |                   ^~~
cddutil.c: In function ‘CddCheckForRepeats’:
cddutil.c:1034:7: warning: the address of ‘CddHasConsensus’ will always evaluate as ‘true’ [-Waddress]
 1034 |   if (!CddHasConsensus) return FALSE;
      |       ^
cddutil.c:1013:23: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 1013 |   Int2                iStatus;
      |                       ^~~~~~~
cddutil.c: In function ‘CddMSLDenDiagToMSLDenSeg’:
cddutil.c:1663:30: warning: variable ‘lasts’ set but not used [-Wunused-but-set-variable]
 1663 |   Int4                lastm, lasts;
      |                              ^~~~~
cddutil.c:1663:23: warning: variable ‘lastm’ set but not used [-Wunused-but-set-variable]
 1663 |   Int4                lastm, lasts;
      |                       ^~~~~
cddutil.c: In function ‘SeqAlignInform’:
cddutil.c:1938:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 1938 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddAlignInform’:
cddutil.c:2125:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2125 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddPssmInform’:
cddutil.c:2248:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2248 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddPosFreqInform’:
cddutil.c:2306:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2306 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddDenDiagCposComputation’:
cddutil.c:2368:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 2368 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c:2365:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2365 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddCposComputation’:
cddutil.c:2571:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 2571 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c:2568:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2568 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddRetrieveBioseqById’:
cddutil.c:3379:15: warning: unused variable ‘retcode’ [-Wunused-variable]
 3379 |   Int2        retcode = 1;
      |               ^~~~~~~
cddutil.c:3377:15: warning: unused variable ‘uid’ [-Wunused-variable]
 3377 |   Int4        uid = 0;
      |               ^~~
cddutil.c: In function ‘CddCalculateTriangle’:
cddutil.c:3534:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3534 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |    ^~
cddutil.c:3534:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3534 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |                               ^~
cddutil.c: In function ‘CddCalculateQuerySim’:
cddutil.c:3653:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3653 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |    ^~
cddutil.c:3653:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3653 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |                               ^~
cddutil.c: In function ‘CddConsensus’:
cddutil.c:3853:49: warning: variable ‘m_end’ set but not used [-Wunused-but-set-variable]
 3853 |   Int4                m_last, m_frst, s_insert, m_end;
      |                                                 ^~~~~
cddutil.c: In function ‘CddCposCompPart1’:
cddutil.c:4247:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 4247 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddGetNewIndexForThreading’:
cddutil.c:4392:14: warning: unused variable ‘Index’ [-Wunused-variable]
 4392 |     Int4  i, Index=0;
      |              ^~~~~
cddutil.c: In function ‘CddCposComp’:
cddutil.c:4474:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 4474 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c: In function ‘CddDenDiagCposComp2KBP’:
cddutil.c:4745:59: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 4745 |   ValNodePtr              ColumnHead, LetterHead, newRow, RowHead, newLetter;
      |                                                           ^~~~~~~
cddutil.c: In function ‘CddDumpTaxLinks’:
cddutil.c:5727:16: warning: unused variable ‘txid’ [-Wunused-variable]
 5727 |   Int4         txid = 0, gi = 0;
      |                ^~~~
cddutil.c: At top level:
cddutil.c:6267:1: warning: "/*" within comment [-Wcomment]
 6267 | /*---------------------------------------------------------------------------*/
      |  
In file included from ../include/cddutil.h:205,
                 from cddutil.c:353:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from cddutil.c:353:
../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  589 | static  SeqIdPtr        CddFindSeqIdInSeqLoc(SeqLocPtr location);
      |                         ^~~~~~~~~~~~~~~~~~~~
cddutil.c:4661:16: warning: ‘CddtakeMatrixCheckpoint’ defined but not used [-Wunused-function]
 4661 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
      |                ^~~~~~~~~~~~~~~~~~~~~~~
In file included from cddutil.c:349:
../include/cdd.h:343:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  343 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/cdd.h:342:19: warning: ‘at’ defined but not used [-Wunused-variable]
  342 | static AsnTypePtr at = atx;
      |                   ^~
../include/cdd.h:341:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  341 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/cdd.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "cdd.h24";
      |               ^~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from cddutil.c:336:
In function ‘strncpy’,
    inlined from ‘CddRegularizeFileName’ at cddutil.c:984:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from cddutil.c:336:
cddutil.c: In function ‘CddRegularizeFileName’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
cddutil.c:984:26: note: in expansion of macro ‘Nlm_StrLen’
  984 |     Nlm_StrNCpy(cAcc,cIn,Nlm_StrLen(cIn)-Nlm_StrLen(cEx));
      |                          ^~~~~~~~~~
cddutil.c: In function ‘CddCopyMSLDenDiag’:
cddutil.c:3015:25: warning: ‘ddpTail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3015 |           ddpTail->next = ddpNew;
      |           ~~~~~~~~~~~~~~^~~~~~~~
In file included from ../include/ncbi.h:59,
                 from cddutil.c:336:
cddutil.c: In function ‘CddCalculateTriangle’:
../include/ncbimem.h:232:23: warning: ‘buffer1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
cddutil.c:3415:19: note: ‘buffer1’ was declared here
 3415 |    Uint1Ptr       buffer1, buffer2, buffer3;
      |                   ^~~~~~~
cddutil.c:3524:22: warning: ‘pscTail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3524 |        pscTail->next = psc; pscTail = psc; psc = NULL;
      |        ~~~~~~~~~~~~~~^~~~~
cddutil.c: In function ‘CddDenDiagCposComp2KBP’:
cddutil.c:4974:11: warning: ‘pssm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4974 |     return(pssm);
      |           ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddposutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddposutil.c:119:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cddposutil.c: In function ‘CddfindThreshSequences’:
cddposutil.c:359:15: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable]
  359 |   SeqIdPtr    thisId;         /* Ids of target sequences in current SeqAlign */
      |               ^~~~~~
cddposutil.c: In function ‘CddfindDenseDiagThreshSequences’:
cddposutil.c:386:16: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable]
  386 |   SeqIdPtr     thisId;        /* Ids of target sequences in current SeqAlign */
      |                ^~~~~~
cddposutil.c: In function ‘CddposFreqsToMatrix’:
cddposutil.c:1038:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4)) + (sizetype)((unsigned int)a * 4))’ may be undefined [-Wsequence-point]
 1038 |      posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
cddposutil.c: In function ‘CddposDenseDiagDemographics’:
cddposutil.c:1094:17: warning: unused variable ‘is_new_id’ [-Wunused-variable]
 1094 |    Boolean      is_new_id = FALSE;
      |                 ^~~~~~~~~
cddposutil.c:1093:17: warning: unused variable ‘segIndex’ [-Wunused-variable]
 1093 |    Int4         segIndex;                   /*Index for which piece we are at*/
      |                 ^~~~~~~~
cddposutil.c:1092:25: warning: variable ‘startS’ set but not used [-Wunused-but-set-variable]
 1092 |    Int4         startQ, startS;    /*Indices into array of starting positions*/
      |                         ^~~~~~
cddposutil.c:1092:17: warning: variable ‘startQ’ set but not used [-Wunused-but-set-variable]
 1092 |    Int4         startQ, startS;    /*Indices into array of starting positions*/
      |                 ^~~~~~
cddposutil.c:1091:17: warning: unused variable ‘curId’ [-Wunused-variable]
 1091 |    SeqIdPtr     curId; /*Used to compare seq. coming from different SeqAligns*/
      |                 ^~~~~
cddposutil.c: In function ‘CddSetUpSearchInternalByLoc’:
cddposutil.c:1246:39: warning: unused variable ‘last_length_adjustment’ [-Wunused-variable]
 1246 |   index, length, length_adjustment=0, last_length_adjustment, min_query_length;
      |                                       ^~~~~~~~~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddSetUpSearchWithReadDb’:
cddposutil.c:2040:43: warning: variable ‘final_db_seq’ set but not used [-Wunused-but-set-variable]
 2040 |       Int4        final_virtual_db_seq=0, final_db_seq=0;
      |                                           ^~~~~~~~~~~~
cddposutil.c:2006:28: warning: unused variable ‘virtual_oid_bit’ [-Wunused-variable]
 2006 |  Uint4            oid_bit, virtual_oid_bit;
      |                            ^~~~~~~~~~~~~~~
cddposutil.c:2006:19: warning: unused variable ‘oid_bit’ [-Wunused-variable]
 2006 |  Uint4            oid_bit, virtual_oid_bit;
      |                   ^~~~~~~
cddposutil.c:2005:30: warning: unused variable ‘virtual_mask_index’ [-Wunused-variable]
 2005 |  Int4            mask_index, virtual_mask_index;
      |                              ^~~~~~~~~~~~~~~~~~
cddposutil.c:2005:18: warning: unused variable ‘mask_index’ [-Wunused-variable]
 2005 |  Int4            mask_index, virtual_mask_index;
      |                  ^~~~~~~~~~
cddposutil.c:2004:19: warning: unused variable ‘alias_oidlist’ [-Wunused-variable]
 2004 |  OIDListPtr       alias_oidlist;
      |                   ^~~~~~~~~~~~~
cddposutil.c:2003:19: warning: unused variable ‘use_private_gilist’ [-Wunused-variable]
 2003 |  Boolean          use_private_gilist = FALSE;
      |                   ^~~~~~~~~~~~~~~~~~
cddposutil.c:2000:20: warning: unused variable ‘vnp’ [-Wunused-variable]
 2000 |   ValNodePtr       vnp;
      |                    ^~~
cddposutil.c: In function ‘CddposReadAlignment’:
cddposutil.c:2226:16: warning: variable ‘alignPos’ set but not used [-Wunused-but-set-variable]
 2226 |   Int4         alignPos, queryOffset, subjectOffset, matchLength;
      |                ^~~~~~~~
In file included from ../include/cddutil.h:205,
                 from cddposutil.c:131:
cddposutil.c: At top level:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from cddposutil.c:131:
../include/cddutil.h:507:27: warning: ‘CddReadBlastOptions’ declared ‘static’ but never defined [-Wunused-function]
  507 | static PGPBlastOptionsPtr CddReadBlastOptions(BioseqPtr bsp, Int4 iPseudo, CharPtr matrix_name);
      |                           ^~~~~~~~~~~~~~~~~~~
../include/cddutil.h:512:13: warning: ‘BlastKarlinBlkCopy’ declared ‘static’ but never defined [-Wunused-function]
  512 | static void BlastKarlinBlkCopy(BLAST_KarlinBlkPtr kbp_in,BLAST_KarlinBlkPtr kbp_out);
      |             ^~~~~~~~~~~~~~~~~~
../include/cddutil.h:516:13: warning: ‘CddputMatrixKbp’ declared ‘static’ but never defined [-Wunused-function]
  516 | static void CddputMatrixKbp(FILE *checkFile, BLAST_KarlinBlkPtr kbp,
      |             ^~~~~~~~~~~~~~~
../include/cddutil.h:518:13: warning: ‘CddputMatrixMatrix’ declared ‘static’ but never defined [-Wunused-function]
  518 | static void CddputMatrixMatrix(FILE *checkFile,
      |             ^~~~~~~~~~~~~~~~~~
../include/cddutil.h:522:16: warning: ‘CddtakeMatrixCheckpoint’ declared ‘static’ but never defined [-Wunused-function]
  522 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
      |                ^~~~~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  589 | static  SeqIdPtr        CddFindSeqIdInSeqLoc(SeqLocPtr location);
      |                         ^~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:591:25: warning: ‘CddRelocateSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  591 | static  void            CddRelocateSeqLoc(SeqLocPtr location, SeqIdPtr sip, Int4 *ali);
      |                         ^~~~~~~~~~~~~~~~~
../include/cddutil.h:592:25: warning: ‘CddSeqLocInExpAlign’ declared ‘static’ but never defined [-Wunused-function]
  592 | static  Int4            CddSeqLocInExpAlign(SeqLocPtr location, CddExpAlignPtr eap);
      |                         ^~~~~~~~~~~~~~~~~~~
../include/cddutil.h:593:25: warning: ‘CddFindSeqIdInAlignAnnot’ declared ‘static’ but never defined [-Wunused-function]
  593 | static  SeqIdPtr        CddFindSeqIdInAlignAnnot(AlignAnnotPtr oldannot);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:623:24: warning: ‘HitYet’ declared ‘static’ but never defined [-Wunused-function]
  623 | static Boolean         HitYet(Int4Ptr retlist, Int4 index, Int4 i);
      |                        ^~~~~~
../include/cddutil.h:649:16: warning: ‘CddFixForXML’ declared ‘static’ but never defined [-Wunused-function]
  649 | static CharPtr CddFixForXML(CharPtr pc);
      |                ^~~~~~~~~~~~
cddposutil.c:971:13: warning: ‘CddfreePosFreqs’ defined but not used [-Wunused-function]
  971 | static void CddfreePosFreqs(Nlm_FloatHi ** posFreqs, Int4 length)
      |             ^~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddposComputeSequenceWeights’:
cddposutil.c:840:35: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  840 |       posSearch->posSigma[qplace] = intervalSigma;
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
cddposutil.c:829:10: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  829 |       if (Sigma > 0) {
      |          ^
cddposutil.c: In function ‘CddposDemographics’:
cddposutil.c:1199:24: warning: ‘retrievalOffset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1199 |          subjectOffset = curSegs->starts[startS] - retrievalOffset;
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddSetUpSearchWithReadDb’:
cddposutil.c:1740:48: warning: ‘min_query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1740 |         if( 0 != BlastComputeLengthAdjustment(1/min_query_length,
      |                                               ~^~~~~~~~~~~~~~~~~
cddposutil.c:1246:63: note: ‘min_query_length’ was declared here
 1246 |   index, length, length_adjustment=0, last_length_adjustment, min_query_length;
      |                                                               ^~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmime.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmime.c:76:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmime.c: In function ‘NcbiMimeAsn1Free’:
objmime.c:126:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  126 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘NcbiMimeAsn1AsnRead’:
objmime.c:173:12: warning: unused variable ‘isError’ [-Wunused-variable]
  173 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘Data_dataFree’:
objmime.c:382:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  382 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘EntrezGeneralAsnRead’:
objmime.c:428:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  428 |    AsnReadFunc func;
      |                ^~~~
objmime.c:427:12: warning: unused variable ‘isError’ [-Wunused-variable]
  427 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘Data_dataAsnRead’:
objmime.c:522:12: warning: unused variable ‘isError’ [-Wunused-variable]
  522 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘BiostrucAlignAsnRead’:
objmime.c:801:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  801 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucAlignSeqAsnRead’:
objmime.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1027 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucSeqAsnRead’:
objmime.c:1220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1220 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucSeqsAsnRead’:
objmime.c:1415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1415 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘SeqAlignData_seq_align_dataFree’:
objmime.c:1613:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1613 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’:
objmime.c:1647:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1647 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘SeqAlignData_seq_align_dataAsnRead’:
objmime.c:1734:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1734 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘BundleSeqsAlignsAsnRead’:
objmime.c:1973:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1973 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/mapmime.h:4,
                 from objmime.c:81:
objmime.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapmime.h:4,
                 from objmime.c:81:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapmime.h:6,
                 from objmime.c:81:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
objmime.c: In function ‘NcbiMimeAsn1AsnRead’:
objmime.c:235:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c: In function ‘EntrezGeneralAsnRead’:
objmime.c:584:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  584 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c:521:10: note: ‘choice’ was declared here
  521 |    Uint1 choice;
      |          ^~~~~~
objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’:
objmime.c:1780:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1780 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c:1733:10: note: ‘choice’ was declared here
 1733 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF strucapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from strucapi.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdalgs.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdatd.c
thrdatd.c: In function ‘atd’:
thrdatd.c:859:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  859 | for(i=0;i<nsc;i++) printf("%d ",sai->al[i]); printf("sai->al\n");
      | ^~~
thrdatd.c:859:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  859 | for(i=0;i<nsc;i++) printf("%d ",sai->al[i]); printf("sai->al\n");
      |                                              ^~~~~~
thrdatd.c:860:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  860 | for(i=0;i<sai->nmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n");
      | ^~~
thrdatd.c:860:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  860 | for(i=0;i<sai->nmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n");
      |                                                   ^~~~~~
thrdatd.c:862:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  862 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      | ^~~
thrdatd.c:862:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  862 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      |                                              ^~~~~~
thrdatd.c:863:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  863 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      | ^~~
thrdatd.c:863:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  863 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      |                                              ^~~~~~
thrdatd.c:864:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  864 | for(i=0;i<sli->nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      | ^~~
thrdatd.c:864:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  864 | for(i=0;i<sli->nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      |                                                   ^~~~~~
thrdatd.c:865:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  865 | for(i=0;i<sli->nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      | ^~~
thrdatd.c:865:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  865 | for(i=0;i<sli->nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      |                                                   ^~~~~~
thrdatd.c:1014:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1014 | for(k=0;k<nsc;k++) printf("%d ",sai->al[k]); printf("sai->al\n");
      | ^~~
thrdatd.c:1014:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1014 | for(k=0;k<nsc;k++) printf("%d ",sai->al[k]); printf("sai->al\n");
      |                                              ^~~~~~
thrdatd.c:1015:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1015 | for(k=0;k<nmt;k++) printf("%d ",sai->sq[k]); printf("sai->sq\n");
      | ^~~
thrdatd.c:1015:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1015 | for(k=0;k<nmt;k++) printf("%d ",sai->sq[k]); printf("sai->sq\n");
      |                                              ^~~~~~
thrdatd.c:1017:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1017 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      | ^~~
thrdatd.c:1017:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1017 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      |                                              ^~~~~~
thrdatd.c:1018:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1018 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      | ^~~
thrdatd.c:1018:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1018 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      |                                              ^~~~~~
thrdatd.c:1019:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1019 | for(i=0;i<nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      | ^~~
thrdatd.c:1019:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1019 | for(i=0;i<nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      |                                              ^~~~~~
thrdatd.c:1020:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1020 | for(i=0;i<nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      | ^~~
thrdatd.c:1020:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1020 | for(i=0;i<nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      |                                              ^~~~~~
thrdatd.c:1244:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1244 | for(i=0;i<nsc;i++) free(spe->gss[i]); free(spe->gss);
      | ^~~
thrdatd.c:1244:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1244 | for(i=0;i<nsc;i++) free(spe->gss[i]); free(spe->gss);
      |                                       ^~~~
thrdatd.c:1251:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1251 | for(i=0; i<ndi; i++) free(spn->nrr[i]); free(spn->nrr);
      | ^~~
thrdatd.c:1251:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1251 | for(i=0; i<ndi; i++) free(spn->nrr[i]); free(spn->nrr);
      |                                         ^~~~
thrdatd.c:1255:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1255 | for(i=0; i<ndi; i++) free(spn->nrp[i]); free(spn->nrp);
      | ^~~
thrdatd.c:1255:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1255 | for(i=0; i<ndi; i++) free(spn->nrp[i]); free(spn->nrp);
      |                                         ^~~~
thrdatd.c:1259:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1259 | for(i=0; i<ndi; i++) free(spn->nrf[i]); free(spn->nrf);
      | ^~~
thrdatd.c:1259:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1259 | for(i=0; i<ndi; i++) free(spn->nrf[i]); free(spn->nrf);
      |                                         ^~~~
thrdatd.c:1260:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1260 | for(i=0; i<ndi; i++) free(spn->frf[i]); free(spn->frf);
      | ^~~
thrdatd.c:1260:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1260 | for(i=0; i<ndi; i++) free(spn->frf[i]); free(spn->frf);
      |                                         ^~~~
thrdatd.c:201:8: warning: variable ‘hh’ set but not used [-Wunused-but-set-variable]
  201 |  float hh;
      |        ^~
thrdatd.c:198:6: warning: variable ‘rf’ set but not used [-Wunused-but-set-variable]
  198 |  int rf;  /* Reference position for a core element              */
      |      ^~
thrdatd.c:188:14: warning: unused variable ‘m’ [-Wunused-variable]
  188 |  int i,j,k,l,m,n; /* Counters                                           */
      |              ^
thrdatd.c:188:12: warning: unused variable ‘l’ [-Wunused-variable]
  188 |  int i,j,k,l,m,n; /* Counters                                           */
      |            ^
thrdatd.c:171:6: warning: variable ‘nrp’ set but not used [-Wunused-but-set-variable]
  171 |  int nrp;  /* Number of residue-peptide contacts in motif        */
      |      ^~~
thrdatd.c:170:6: warning: variable ‘nrr’ set but not used [-Wunused-but-set-variable]
  170 |  int nrr;  /* Number of residue-residue contacts in motif        */
      |      ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c
thrdbwfi.c: In function ‘bwfi’:
thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
  114 | }
      | ^
thrdbwfi.c:64:5: warning: ‘nt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   64 | int nt;  /* Number of threads within specified ensemble cutoff */
      |     ^~
thrdbwfi.c:89:20: warning: ‘nz’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   89 | cw=0.; ct=ttb->mx; for(i=0; i<=nz; i++) {
      |                    ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpal.c
thrdcpal.c: In function ‘cpal’:
thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type]
  210 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpll.c
thrdcpll.c: In function ‘cpll’:
thrdcpll.c:74:5: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   74 | int nrt;  /* Number of residue types */
      |     ^~~
thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type]
  229 | }
      | ^
thrdcpll.c:220:15: warning: ‘r2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  220 |   cl->rf.t2[k]=r2;
      |   ~~~~~~~~~~~~^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcprl.c
thrdcprl.c: In function ‘cprl’:
thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type]
  261 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcxei.c
thrdcxei.c: In function ‘cxei’:
thrdcxei.c:94:15: warning: variable ‘ms’ set but not used [-Wunused-but-set-variable]
   94 | int     ntot, ms;
      |               ^~
thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type]
  205 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrddgri.c
thrddgri.c: In function ‘g’:
thrddgri.c:72:5: warning: variable ‘s0’ set but not used [-Wunused-but-set-variable]
   72 | int s0;
      |     ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsal0.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalr.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalu.c
thrdsalu.c: In function ‘salu’:
thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type]
   83 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c
thrdsgoi.c: In function ‘sgoi’:
thrdsgoi.c:98:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   98 |   for(i=0; i<nsc; i++)  si[i]=i;  break; }
      |   ^~~
thrdsgoi.c:98:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   98 |   for(i=0; i<nsc; i++)  si[i]=i;  break; }
      |                                   ^~~~~
thrdsgoi.c:115:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  115 |   for(i=0; i<nsc; i++) to[i]=0; break; }
      |   ^~~
thrdsgoi.c:115:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  115 |   for(i=0; i<nsc; i++) to[i]=0; break; }
      |                                 ^~~~~
thrdsgoi.c:119:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  119 |   for(i=0; i<nsc; i++) to[i]=1; break; }
      |   ^~~
thrdsgoi.c:119:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  119 |   for(i=0; i<nsc; i++) to[i]=1; break; }
      |                                 ^~~~~
thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type]
  123 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslo0.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslor.c
thrdslor.c: In function ‘slor’:
thrdslor.c:90:6: warning: ‘mp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   90 | int *mp;  /* Motif-derived loop length limits */
      |      ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslou.c
thrdslou.c: In function ‘slou’:
thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
  114 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspci.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspea.c
thrdspea.c: In function ‘spea’:
thrdspea.c:91:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   91 | int     nrt;            /* Number of residue types in potential */
      |         ^~~
thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type]
  189 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspel.c
thrdspel.c: In function ‘spel’:
thrdspel.c:88:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   88 | int     nrt;            /* Number of residue types in potential */
      |         ^~~
thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type]
  188 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspni.c
thrdspni.c: In function ‘spni’:
thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type]
  238 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttb0.c
thrdttb0.c: In function ‘ttb0’:
thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type]
   75 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttbi.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdzsc.c
thrdzsc.c: In function ‘zsc’:
thrdzsc.c:107:7: warning: unused variable ‘gs’ [-Wunused-variable]
  107 | int g,gs;
      |       ^~
thrdzsc.c:102:18: warning: unused variable ‘zsc’ [-Wunused-variable]
  102 | float tg,tgp,tgm,zsc;         /* Energy of shuffled sequence */
      |                  ^~~
thrdzsc.c:95:5: warning: unused variable ‘ps’ [-Wunused-variable]
   95 | int ps,ms,cs,
      |     ^~
thrdzsc.c:80:5: warning: unused variable ‘temp’ [-Wunused-variable]
   80 | int temp;         /* Random index of the query sequence */
      |     ^~~~
thrdzsc.c:79:2: warning: unused variable ‘kk’ [-Wunused-variable]
   79 |  kk,itr,ii,jj; /* Counters */
      |  ^~
thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type]
  369 | }
      | ^
thrdzsc.c:357:39: warning: ‘tg_max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  357 |  ttb->zsc[i_max]=ScalingFactor*(tg_max-avg)/disp;
      |                                ~~~~~~~^~~~~
rm -f libncbimmdb.a
ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o  thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbimmdb.a ../lib
ranlib ../lib/libncbimmdb.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF csim.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from csim.c:74:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
csim.c: In function ‘set_pam_200’:
csim.c:163:29: warning: missing braces around initializer [-Wmissing-braces]
  163 |  static Int2 wgts[23][23] = { /* the PAM200 matrix */
      |                             ^
  164 | 
  165 |  2,-2, 0, 0,-2,-1, 0, 1,-1,-1,-2,-1,-1,-3, 1, 1, 1,-5,-3, 0, 1, 1, 0,
      |  {                                                                  }
  166 |  -2, 5, 0,-1,-3, 1,-1,-3, 1,-2,-2, 2, 0,-3, 0, 0,-1, 1,-4,-2, 0, 1, 0,
      |  {                                                                   }
  167 |   0, 0, 2, 2,-3, 0, 1, 0, 1,-1,-2, 1,-2,-2, 0, 1, 0,-4,-1,-2, 3, 2, 0,
      |   {                                                                  }
  168 |   0,-1, 2, 3,-4, 1, 3, 0, 0,-2,-3, 0,-2,-4,-1, 0, 0,-6,-3,-2, 4, 3, 0,
      |   {                                                                  }
  169 |  -2,-3,-3,-4, 8,-4,-4,-3,-3,-2,-5,-4,-4,-4,-2, 0,-2,-6, 0,-2,-3,-3, 0,
      |  {                                                                   }
  170 |  -1, 1, 0, 1,-4, 4, 2,-1, 2,-2,-1, 0,-1,-4, 0,-1,-1,-4,-3,-2, 2, 4, 0,
      |  {                                                                   }
  171 |   0,-1, 1, 3,-4, 2, 3, 0, 0,-2,-3, 0,-2,-4, 0, 0, 0,-6,-3,-2, 3, 4, 0,
      |   {                                                                  }
  172 |   1,-3, 0, 0,-3,-1, 0, 4,-2,-2,-3,-2,-3,-3,-1, 1, 0,-5,-4,-1, 1, 0, 0,
      |   {                                                                  }
  173 |  -1, 1, 1, 0,-3, 2, 0,-2, 5,-2,-2, 0,-2,-1, 0,-1,-1,-3, 0,-2, 2, 2, 0,
      |  {                                                                   }
  174 |  -1,-2,-1,-2,-2,-2,-2,-2,-2, 4, 2,-1, 2, 1,-2,-1, 0,-5,-1, 3,-1,-1, 0,
      |  {                                                                   }
  175 |  -2,-2,-2,-3,-5,-1,-3,-3,-2, 2, 4,-2, 3, 1,-2,-2,-1,-4,-1, 1,-2,-1, 0,
      |  {                                                                   }
  176 |  -1, 2, 1, 0,-4, 0, 0,-2, 0,-1,-2, 4, 1,-4,-1, 0, 0,-3,-4,-2, 1, 1, 0,
      |  {                                                                   }
  177 |  -1, 0,-2,-2,-4,-1,-2,-3,-2, 2, 3, 1, 5, 0,-2,-1, 0,-4,-2, 1,-1, 0, 0,
      |  {                                                                   }
  178 |  -3,-3,-2,-4,-4,-4,-4,-3,-1, 1, 1,-4, 0, 7,-4,-2,-2, 0, 5,-1,-2,-3, 0,
      |  {                                                                   }
  179 |   1, 0, 0,-1,-2, 0, 0,-1, 0,-2,-2,-1,-2,-4, 5, 1, 0,-5,-4,-1, 0, 1, 0,
      |   {                                                                  }
  180 |   1, 0, 1, 0, 0,-1, 0, 1,-1,-1,-2, 0,-1,-2, 1, 2, 1,-2,-2,-1, 1, 1, 0,
      |   {                                                                  }
  181 |   1,-1, 0, 0,-2,-1, 0, 0,-1, 0,-1, 0, 0,-2, 0, 1, 3,-4,-2, 0, 1, 0, 0,
      |   {                                                                  }
  182 |  -5, 1,-4,-6,-6,-4,-6,-5,-3,-5,-4,-3,-4, 0,-5,-2,-4,12, 0,-6,-3,-4, 0,
      |  {                                                                   }
  183 |  -3,-4,-1,-3, 0,-3,-3,-4, 0,-1,-1,-4,-2, 5,-4,-2,-2, 0, 7,-2,-1,-2, 0,
      |  {                                                                   }
  184 |   0,-2,-2,-2,-2,-2,-2,-1,-2, 3, 1,-2, 1,-1,-1,-1, 0,-6,-2, 4,-1,-1, 0,
      |   {                                                                  }
  185 |   1, 0, 3, 4,-3, 2, 3, 1, 2,-1,-2, 1,-1,-2, 0, 1, 1,-3,-1,-1, 4, 4, 0,
      |   {                                                                  }
  186 |   1, 1, 2, 3,-3, 4, 4, 0, 2,-1,-1, 1, 0,-3, 1, 1, 0,-4,-2,-1, 4, 5, 0,
      |   {                                                                  }
  187 |   0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
      |   {
  188 | };
      | }
csim.c:196:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  196 |        V[achars[i]][achars[j]]=10*(wgts[i][j]);
      |          ~~~~~~^~~
csim.c:196:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  196 |        V[achars[i]][achars[j]]=10*(wgts[i][j]);
      |                     ~~~~~~^~~
csim.c: In function ‘set_pam_file’:
csim.c:228:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  228 |            V[alph[i]][alph[j]]=(Int2)(10*weight);
      |              ~~~~^~~
csim.c:228:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  228 |            V[alph[i]][alph[j]]=(Int2)(10*weight);
      |                       ~~~~^~~
csim.c: In function ‘big_pass’:
csim.c:668:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  668 |       va = v[A[i]];
      |              ~^~~
csim.c:692:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  692 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c: In function ‘diff1’:
csim.c:799:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  799 |       va = v[A[1]];
      |              ~^~~
csim.c:805:23: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  805 |             { c = va[B[j]] - ( GAP(j-1) + GAP(N-j) );
      |                      ~^~~
csim.c:849:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  849 |       va = v[A[i]];
      |              ~^~~
csim.c:853:45: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  853 |    DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
      |                                            ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:853:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  853 |    DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
      |                                                  ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:874:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  874 |       va = v[A[i+1]];
      |              ~^~~~~
csim.c:878:45: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 |    DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
      |                                            ~^~~~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:878:53: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 |    DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
      |                                                    ~^~~~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:893:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  893 |       if (c > midc || CC[j] != DD[j] && RR[j] == SS[j])
      |                       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
csim.c: In function ‘locate’:
csim.c:974:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  974 |       va = v[A[i]];
      |              ~^~~
csim.c:991:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  991 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1030:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1030 |        va = v[A[(plist->m1)]];
      |               ~^~~~~~~~~~~~~
csim.c:1043:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1043 |     DIAG((plist->m1), j, c, p+va[B[j]])  /* diagonal */
      |                                  ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1061:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1061 |     if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                       ~~~~~~~~^~~~~~~~~~
csim.c:1062:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1062 |                                 || fi > rl && fj > cl ) )
      |                                    ~~~~~~~~^~~~~~~~~~
csim.c:1071:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~^~~~~~~~~~
csim.c:1072:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1072 |         || fi > rl && fj > cl ) )
      |            ~~~~~~~~^~~~~~~~~~
csim.c:1084:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1084 |        va = v[B[(plist->n1)]];
      |               ~^~~~~~~~~~~~~
csim.c:1110:42: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1110 |            DIAG(i, (plist->n1), c, p+va[A[i]])
      |                                         ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1128:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1128 |            if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                              ~~~~~~~~^~~~~~~~~~
csim.c:1129:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1129 |                  || fi > rl && fj > cl ) )
      |                     ~~~~~~~~^~~~~~~~~~
csim.c:1138:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1138 |        if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~^~~~~~~~~~
csim.c:1139:47: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1139 |                                    || fi > rl && fj > cl ) )
      |                                       ~~~~~~~~^~~~~~~~~~
csim.c:1144:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1144 |       if ( (plist->m1) == 1 && (plist->n1) == 1 || no_cross(flag, plist, &rl, &cl) )
      |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
csim.c: In function ‘small_pass’:
csim.c:1186:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1186 |       va = v[A[i]];
      |              ~^~~
csim.c:1212:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1212 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c: In function ‘display’:
csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1360 |  if (i < M || j < N)
      |     ^
csim.c: In function ‘set_pam_file’:
csim.c:227:12: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  227 |            fscanf(fp, "%f", &weight);      /**get the matrix**/
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
csim.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: csim.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
csim.c: In function ‘SIM’:
csim.c:1071:62: warning: ‘dj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                                                           ~~~^~~~
csim.c:928:23: note: ‘dj’ was declared here
  928 |   register  Int4  di, dj;  /* end-point associated with d */
      |                       ^~
csim.c:1071:51: warning: ‘di’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                                                ~~~^~~~
csim.c:928:19: note: ‘di’ was declared here
  928 |   register  Int4  di, dj;  /* end-point associated with d */
      |                   ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF db_slist.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/list.h:56,
                 from db_slist.c:97:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
db_slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: db_slist.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dust.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from dust.c:102:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: dust.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
dust.c: In function ‘slpDust.constprop’:
dust.c:655:23: warning: ‘sintp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  655 |    slp->data.ptrvalue = (Pointer) sintp;
      |    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dust.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from blast_dust.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_dust.c:39:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   39 | static char const rcsid[] =
      |                   ^~~~~
blast_dust.c: In function ‘s_SlpDust’:
blast_dust.c:348:23: warning: ‘sintp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  348 |    slp->data.ptrvalue = (Pointer) sintp;
      |    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF falign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from falign.c:92:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
falign.c: In function ‘fbld_table’:
falign.c:490:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  490 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:494:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  494 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘bbld_table’:
falign.c:517:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  517 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:521:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  521 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rcbld_table’:
falign.c:544:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  544 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:548:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  548 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘ex_table’:
falign.c:567:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  567 |  ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                           ^~
falign.c: In function ‘free_all’:
falign.c:668:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  668 |   if (df = cdiag_prev[l]) {
      |       ^~
falign.c: In function ‘scan’:
falign.c:688:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  688 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:694:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  694 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c:710:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  710 |   if (df = diag_prev[len1+len2-1-pos]) {
      |       ^~
falign.c:719:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  719 |   if (df=diag_prev[l]) {
      |       ^~
falign.c: In function ‘fscan’:
falign.c:763:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  763 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:769:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  769 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘bscan’:
falign.c:794:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  794 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:800:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  800 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rfscan’:
falign.c:870:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  870 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:876:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  876 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c:881:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  881 |   if (df = diag_prev[len1+se2-pos]) {
      |       ^~
falign.c:889:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  889 |   if (df = diag_prev[len1+se2-pos]) {
      |       ^~
falign.c: In function ‘trcscan’:
falign.c:1476:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1476 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:1482:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1482 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rclocal’:
falign.c:1547:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1547 |  if (pf = diag_prev[ocur_diag]) {
      |      ^~
falign.c: In function ‘enterS’:
falign.c:1897:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1897 |  if (s = findS(f->bgf)) {
      |      ^
falign.c: In function ‘local’:
falign.c:1958:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1958 |  if (pf = diag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘align’:
falign.c:1999:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1999 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘calign’:
falign.c:2054:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2054 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘malign’:
falign.c:2109:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2109 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
At top level:
falign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: falign.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF g_any.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from g_any.c:89:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
g_any.c: In function ‘k_align’:
g_any.c:212:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  212 |   va = vv[A[i+1]];
      |           ~^~~~~
g_any.c:229:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  229 |    if (j < J2) c = s + va[B[j+1]];
      |                           ~^~~~~
g_any.c:319:10: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  319 |   b2 = PP[t1][b1];
      |          ^
g_any.c:322:10: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  322 |   t2 = PT[t1][b1];
      |          ^
g_any.c: In function ‘z_ALIGN’:
g_any.c:367:7: warning: variable ‘check_score’ set but not used [-Wunused-but-set-variable]
  367 |  Int4 check_score;
      |       ^~~~~~~~~~~
g_any.c: In function ‘CHECK_SCORE’:
g_any.c:492:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  492 |   score = vv[A[++i]][B[++j]] + score;
      |              ~^~~~~
g_any.c:492:23: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  492 |   score = vv[A[++i]][B[++j]] + score;
      |                      ~^~~~~
At top level:
g_any.c:428:35: warning: ‘CLINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |                                   ^~~~~
g_any.c:428:24: warning: ‘BLINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |                        ^~~~~
g_any.c:428:13: warning: ‘ALINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |             ^~~~~
g_any.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: g_any.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim2.c
sim2.c: In function ‘SIM2’:
sim2.c:19:16: warning: unused variable ‘compB’ [-Wunused-variable]
   19 |  CharPtr A, B, compB = NULL;
      |                ^~~~~
sim2.c:17:26: warning: unused variable ‘sapC’ [-Wunused-variable]
   17 |  SeqAlignPtr sap = NULL, sapC=NULL, out_sap, out_sapC;
      |                          ^~~~
At top level:
sim2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim2.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from sim3.c:28:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sim3.c: In function ‘locate’:
sim3.c:103:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  103 |   ecode = (ecode << 2) + encoding[*p++];
      |                                   ^~~~
sim3.c:105:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  105 |   ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                            ^~~~
sim3.c:113:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  113 |                 ecode = (ecode << 2) + encoding[*p++];
      |                                                 ^~~~
sim3.c:115:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  115 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
sim3.c:129:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  129 |                 ecode = (ecode << 2) + encoding[*p++];
      |                                                 ^~~~
sim3.c:133:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  133 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
sim3.c:152:46: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  152 |   ecode1 = ((ecode1 & mask) << 2) + encoding[*q++];
      |                                              ^~~~
sim3.c:155:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  155 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
At top level:
sim3.c:1067:16: warning: ‘is_end_seg’ defined but not used [-Wunused-function]
 1067 | static Boolean is_end_seg(EditScriptPtr curr, EditScriptPtr head)
      |                ^~~~~~~~~~
sim3.c:1056:13: warning: ‘get_current_pos’ defined but not used [-Wunused-function]
 1056 | static Int4 get_current_pos(Int4Ptr pos, Int4 length)
      |             ^~~~~~~~~~~~~~~
sim3.c:1048:13: warning: ‘get_start_pos’ defined but not used [-Wunused-function]
 1048 | static Int4 get_start_pos(SeqLocPtr slp)
      |             ^~~~~~~~~~~~~
sim3.c:806:13: warning: ‘Print_Script’ defined but not used [-Wunused-function]
  806 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, CharPtr A, CharPtr B)
      |             ^~~~~~~~~~~~
sim3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim3.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sim3.c: In function ‘locate’:
sim3.c:230:17: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  230 |  *j2 = paired_bj+1;
      |        ~~~~~~~~~^~
sim3.c:229:6: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  229 |  *j1 = paired_fj;
      |  ~~~~^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from sim4.c:18:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sim4.c: In function ‘sim4x’:
sim4.c:630:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  630 |   while(i1 = sgp->Blist[i].next) {
      |         ^~
sim4.c: In function ‘greedy’:
sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1770 |              if (row == 0 && col == 0)
      |                 ^
sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1794 |              if (row == 0)
      |                 ^
sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1838 |              if (col == 0)
      |                 ^
sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1962 |                if (row == m && col == n)
      |                   ^
sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1991 |                if (row == m)
      |                   ^
sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2037 |                if (col == n)
      |                   ^
sim4.c: In function ‘DISPLAY’:
sim4.c:2625:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2625 |       if (a >= ALINE+50 || i >= M && j >= N)
      |                            ~~~~~~~^~~~~~~~~
At top level:
sim4.c:2592:13: warning: ‘DISPLAY’ defined but not used [-Wunused-function]
 2592 | static void DISPLAY(Int1 A[], Int1 B[], Int4 M, Int4 N, Int4 S[], Int4 AP, Int4 BP)
      |             ^~~~~~~
sim4.c:2563:13: warning: ‘S2A’ defined but not used [-Wunused-function]
 2563 | static void S2A(EditScriptPtr head, Int4Ptr S)
      |             ^~~
sim4.c:2499:13: warning: ‘Print_Script’ defined but not used [-Wunused-function]
 2499 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, data_t *data)
      |             ^~~~~~~~~~~~
sim4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim4.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sim4.c: In function ‘locate’:
sim4.c:2919:19: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2919 |   *j2 = paired_bj + 1;
      |         ~~~~~~~~~~^~~
sim4.c:2918:7: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2918 |   *j1 = paired_fj;
      |   ~~~~^~~~~~~~~~~
sim4.c: In function ‘sim4x’:
sim4.c:2112:37: warning: ‘forth’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2112 |         if (m-min_row[back]>=max_row[forth]) {
      |                                     ^
sim4.c:1609:18: note: ‘forth’ was declared here
 1609 |   Int4     back, forth;            /* backward and forward limits at exit */
      |                  ^~~~~
sim4.c:2112:22: warning: ‘back’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2112 |         if (m-min_row[back]>=max_row[forth]) {
      |                      ^
sim4.c:1609:12: note: ‘back’ was declared here
 1609 |   Int4     back, forth;            /* backward and forward limits at exit */
      |            ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF simutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from simutil.c:103:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
simutil.c: In function ‘make_align’:
simutil.c:495:9: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
  495 |   Uint1 strand;
      |         ^~~~~~
At top level:
simutil.c:848:16: warning: ‘is_alu_seq’ defined but not used [-Wunused-function]
  848 | static Boolean is_alu_seq(CharPtr name)
      |                ^~~~~~~~~~
simutil.c:814:16: warning: ‘re_cal_score’ defined but not used [-Wunused-function]
  814 | static FloatHi re_cal_score(RecordEndsPtr o_rep, RecordEndsPtr n_rep)
      |                ^~~~~~~~~~~~
simutil.c:344:17: warning: ‘convert’ defined but not used [-Wunused-function]
  344 | static ScorePtr convert(Int4Ptr x, Int4Ptr y, Int4Ptr start, Int4Ptr length, Int4 n, SeqLocPtr locx, SeqLocPtr locy, Int2Ptr numseg, FloatHiPtr SegScores)
      |                 ^~~~~~~
simutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: simutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF slist.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/list.h:56,
                 from slist.c:101:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: slist.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sec.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from sec.c:67:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sec.c: In function ‘Region’:
sec.c:268:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  268 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:268:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  268 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:292:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  292 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:292:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  292 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:321:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  321 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:321:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  321 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:345:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  345 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:345:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  345 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:428:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  428 |        diag_score = diag_score + V[seq1[i]][seq2[j]];
      |                                    ~~~~^~~
sec.c:428:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  428 |        diag_score = diag_score + V[seq1[i]][seq2[j]];
      |                                             ~~~~^~~
At top level:
sec.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sec.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sec.c: In function ‘Region’:
sec.c:504:11: warning: ‘old_l’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  504 |     LB[i] = old_l;
      |     ~~~~~~^~~~~~~
sec.c:72:37: warning: ‘ppj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   72 | #define Min(x,y)  ((x) <= (y) ? (x) : (y))
      |                                     ^
sec.c:172:20: note: ‘ppj’ was declared here
  172 |  Int4 pi, pj, ppi, ppj;
      |                    ^~~
sec.c:394:31: warning: ‘ppi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  394 |        for (i = ppi; i <= ci; ++i) {
      |                               ^~~
sec.c:503:29: warning: ‘pi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  503 |       for (i = pi; i <= ci; ++i) {
      |                             ^~~
sec.c:72:37: warning: ‘ej’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   72 | #define Min(x,y)  ((x) <= (y) ? (x) : (y))
      |                                     ^
sec.c:163:19: note: ‘ej’ was declared here
  163 |  Int4 bi, bj, ei, ej, t;
      |                   ^~
sec.c:163:15: warning: ‘ei’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  163 |  Int4 bi, bj, ei, ej, t;
      |               ^~
sec.c:71:37: warning: ‘bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   71 | #define Max(x,y)  ((x) >= (y) ? (x) : (y))
      |                                     ^
sec.c:163:11: note: ‘bj’ was declared here
  163 |  Int4 bi, bj, ei, ej, t;
      |           ^~
sec.c:462:16: warning: ‘bi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  462 |      MemFree(LB+bi);
      |                ^
sec.c:463:16: warning: ‘RB’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  463 |      MemFree(RB+bi);
      |              ~~^~~
sec.c:462:16: warning: ‘LB’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  462 |      MemFree(LB+bi);
      |              ~~^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tfuns.c
tfuns.c: In function ‘find_orf’:
tfuns.c:866:26: warning: unused variable ‘into’ [-Wunused-variable]
  866 |  IntFuzzPtr infrom=NULL, into=NULL;
      |                          ^~~~
tfuns.c:866:13: warning: unused variable ‘infrom’ [-Wunused-variable]
  866 |  IntFuzzPtr infrom=NULL, into=NULL;
      |             ^~~~~~
At top level:
tfuns.c:977:13: warning: ‘find_orf_from_circle’ defined but not used [-Wunused-function]
  977 | static void find_orf_from_circle (SeqPortPtr spp, Boolean flagIsCircle,
      |             ^~~~~~~~~~~~~~~~~~~~
tfuns.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: tfuns.c,v 6.17 2015/08/17 17:15:09 bollin Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF toasn3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from toasn3.c:10:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
toasn3.c: In function ‘FindOrg’:
toasn3.c:1444:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 1444 |     Int4        len;
      |                 ^~~
toasn3.c: In function ‘CheckQualsWithComm’:
toasn3.c:1731:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
 1731 |     OrgRefPtr    orp;
      |                  ^~~
toasn3.c: In function ‘CheckQuals’:
toasn3.c:1768:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
 1768 |     OrgRefPtr    orp;
      |                  ^~~
toasn3.c: In function ‘CountSourceFeat’:
toasn3.c:2570:13: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2570 |     Pointer pnt;
      |             ^~~
toasn3.c:2561:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2561 |     ValNodePtr    vnp;
      |                   ^~~
toasn3.c: In function ‘TASNTrimInternalSemicolons’:
toasn3.c:4155:12: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 4155 |   CharPtr  tmp;
      |            ^~~
toasn3.c: In function ‘ImpFeatToProtRef’:
toasn3.c:4861:13: warning: variable ‘lfree’ set but not used [-Wunused-but-set-variable]
 4861 |     Boolean lfree = FALSE, partial5, partial3;
      |             ^~~~~
toasn3.c: In function ‘RemovePeptideImpFeats’:
toasn3.c:5160:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable]
 5160 |     ImpFeatPtr         ifp;
      |                        ^~~
At top level:
toasn3.c:1711:16: warning: ‘GetQualValue’ defined but not used [-Wunused-function]
 1711 | static CharPtr GetQualValue(GBQualPtr gbqual, CharPtr qual)
      |                ^~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from toasn3.c:19:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
toasn3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: toasn3.c,v 6.150 2016/11/02 23:36:09 kans Exp $";
      |                   ^~~~~
toasn3.c: In function ‘CdEndCheck’:
toasn3.c:4666:16: warning: ‘m_oldto’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4666 |       msip->to = m_oldto;
      |       ~~~~~~~~~^~~~~~~~~
toasn3.c:4665:18: warning: ‘m_oldfrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4665 |       msip->from = m_oldfrom;
      |       ~~~~~~~~~~~^~~~~~~~~~~
toasn3.c:4663:13: warning: ‘oldto’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4663 |     sip->to = oldto;
      |     ~~~~~~~~^~~~~~~
toasn3.c:4662:15: warning: ‘oldfrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4662 |     sip->from = oldfrom;
      |     ~~~~~~~~~~^~~~~~~~~
toasn3.c: In function ‘FixNucProtSet’:
toasn3.c:2205:21: warning: ‘bseg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2205 |         bseg->annot = sap;
      |         ~~~~~~~~~~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF toporg.c
toporg.c: In function ‘ChkSegset’:
toporg.c:64:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable]
   64 |   Boolean       is_org = FALSE, is_modif = FALSE, is_title = FALSE;
      |                                                   ^~~~~~~~
toporg.c:63:17: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
   63 |   OrgRefPtr     orp;
      |                 ^~~
toporg.c:60:17: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   60 |   Pointer       pnt;
      |                 ^~~
toporg.c:55:17: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
   55 |   ValNodePtr    vnp = NULL, set_vnp = NULL, upd_date_vnp = NULL;
      |                 ^~~
toporg.c: In function ‘ChkNucProt’:
toporg.c:608:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable]
  608 |   Boolean       is_org = FALSE, is_modif = FALSE, is_title = FALSE;
      |                                                   ^~~~~~~~
toporg.c: In function ‘StripBSfromParts’:
toporg.c:1330:17: warning: variable ‘empty’ set but not used [-Wunused-but-set-variable]
 1330 |   Boolean       empty;
      |                 ^~~~~
toporg.c:1329:17: warning: variable ‘bsmp’ set but not used [-Wunused-but-set-variable]
 1329 |   BSMapPtr      bsmp;
      |                 ^~~~
toporg.c:1328:29: warning: variable ‘set_vnp’ set but not used [-Wunused-but-set-variable]
 1328 |   ValNodePtr    descr, vnp, set_vnp;
      |                             ^~~~~~~
toporg.c: In function ‘MapsToGenref’:
toporg.c:2021:17: warning: variable ‘loc’ set but not used [-Wunused-but-set-variable]
 2021 |   SeqLocPtr     loc;
      |                 ^~~
toporg.c:2016:17: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable]
 2016 |   ValNodePtr    descr = NULL, head, last, vnp;
      |                 ^~~~~
toporg.c: In function ‘FindOldLineage’:
toporg.c:2606:17: warning: variable ‘lineage’ set but not used [-Wunused-but-set-variable]
 2606 |   CharPtr       lineage;
      |                 ^~~~~~~
toporg.c: In function ‘ArePubsMergeableForFig’:
toporg.c:4796:36: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses]
 4796 |         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
      |                                    ^~
toporg.c:4796:12: note: add parentheses around left hand side expression to silence this warning
 4796 |         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
      |            (                      )
toporg.c: In function ‘StripBadTitleFromProteinProducts’:
toporg.c:5311:22: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable]
 5311 |   Uint1              tech;
      |                      ^~~~
toporg.c: In function ‘FindPubWithFig’:
toporg.c:5647:10: warning: variable ‘a’ set but not used [-Wunused-but-set-variable]
 5647 |     Int4 a = 0;
      |          ^
toporg.c: In function ‘AddMissingGeneXref’:
toporg.c:5955:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
 5955 |   Int2               count;
      |                      ^~~~~
toporg.c: In function ‘ConvertSegSetToDeltaSeqInt’:
toporg.c:7093:18: warning: unused variable ‘str’ [-Wunused-variable]
 7093 |   CharPtr        str, ttl = NULL;
      |                  ^~~
toporg.c:7086:18: warning: unused variable ‘ovp’ [-Wunused-variable]
 7086 |   ObjValNodePtr  ovp;
      |                  ^~~
At top level:
toporg.c:5475:13: warning: ‘SynchronizePseudogenesProc’ defined but not used [-Wunused-function]
 5475 | static void SynchronizePseudogenesProc (
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
toporg.c:3119:13: warning: ‘BarCodeTechToKeyword’ defined but not used [-Wunused-function]
 3119 | static void BarCodeTechToKeyword (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~~~
toporg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: toporg.c,v 6.251 2016/11/02 23:36:10 kans Exp $";
      |                   ^~~~~
toporg.c: In function ‘MergeEquivCitSubs’:
toporg.c:3905:7: warning: ‘csp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3905 |   if (DateMatch (csp1->date, csp2->date, FALSE) != 0) return FALSE;
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
toporg.c:3925:18: note: ‘csp1’ was declared here
 3925 |   CitSubPtr      csp1, csp2;
      |                  ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pobutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/pobutil.h:7,
                 from pobutil.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pobutil.c: In function ‘build_repeat_feat’:
pobutil.c:187:7: warning: unused variable ‘c’ [-Wunused-variable]
  187 |  Char c='%';
      |       ^
pobutil.c: In function ‘merge_StdSeg’:
pobutil.c:1033:7: warning: variable ‘start_1’ set but not used [-Wunused-but-set-variable]
 1033 |  Int4 start_1, stop_1, start_2, stop_2;
      |       ^~~~~~~
pobutil.c:1031:7: warning: unused variable ‘overlap’ [-Wunused-variable]
 1031 |  Int4 overlap = -1;
      |       ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/pobutil.h:7,
                 from pobutil.c:3:
pobutil.c: In function ‘FindHumanRepeats’:
../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args]
  191 | #define Nlm_MemSet  memset
      |                     ^~~~~~
../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’
  210 | #define MemSet  Nlm_MemSet
      |                 ^~~~~~~~~~
pobutil.c:2380:2: note: in expansion of macro ‘MemSet’
 2380 |  MemSet((Pointer) (&tmp), sizeof(ValNode), 0);
      |  ^~~~~~
../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args]
  191 | #define Nlm_MemSet  memset
      |                     ^~~~~~
../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’
  210 | #define MemSet  Nlm_MemSet
      |                 ^~~~~~~~~~
pobutil.c:2381:2: note: in expansion of macro ‘MemSet’
 2381 |  MemSet((Pointer) (&si), sizeof(SeqInt), 0);
      |  ^~~~~~
pobutil.c: In function ‘AluFeat’:
pobutil.c:2431:10: warning: variable ‘my_userdata’ set but not used [-Wunused-but-set-variable]
 2431 |  Pointer my_userdata;
      |          ^~~~~~~~~~~
At top level:
pobutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pobutil.c,v 6.10 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF stsutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from stsutil.c:88:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
stsutil.c: In function ‘InitSTSSearch_r’:
stsutil.c:270:10: warning: unused variable ‘StsCount’ [-Wunused-variable]
  270 |     Int4 StsCount=0;
      |          ^~~~~~~~
stsutil.c: In function ‘GetSTSEntry’:
stsutil.c:635:13: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
  635 |     CharPtr p;
      |             ^
stsutil.c: In function ‘STSCalculateHash’:
stsutil.c:753:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  753 |         if ((j = HashCode[*p++]) < 0)
      |                           ^~~~
stsutil.c: In function ‘STSReverse’:
stsutil.c:771:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  771 |         if ((*t = ComplCode[*s]) == 0)
      |                             ^~
stsutil.c: In function ‘InitHashTable’:
stsutil.c:910:21: warning: variable ‘sts_uid’ set but not used [-Wunused-but-set-variable]
  910 |     CharPtr gb_uid, sts_uid;
      |                     ^~~~~~~
stsutil.c:910:13: warning: variable ‘gb_uid’ set but not used [-Wunused-but-set-variable]
  910 |     CharPtr gb_uid, sts_uid;
      |             ^~~~~~
stsutil.c:908:23: warning: variable ‘gi’ set but not used [-Wunused-but-set-variable]
  908 |     Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
      |                       ^~
stsutil.c:908:10: warning: variable ‘id_sts’ set but not used [-Wunused-but-set-variable]
  908 |     Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
      |          ^~~~~~
stsutil.c:907:23: warning: unused variable ‘error’ [-Wunused-variable]
  907 |     Int4  LineLength, error= FALSE;
      |                       ^~~~~
At top level:
stsutil.c:892:13: warning: ‘STSHashInitFree’ defined but not used [-Wunused-function]
  892 | static void STSHashInitFree(STSHashInitPtr sts)
      |             ^~~~~~~~~~~~~~~
stsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: stsutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
stsutil.c: In function ‘GetSTSEntry’:
stsutil.c:654:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
  654 |     TmpVal[j][k-1] = NULLB;
stsutil.c:633:10: note: at offset 0 to object ‘TmpVal’ with size 1152 declared here
  633 |     Char TmpVal[MAXDBPAR][128];
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggadj.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggadj.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggadj.c: In function ‘score_possible_splice_sites’:
suggadj.c:874:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  874 | score = ( vx[seq_or_rev[putative_donor]]==3) ?10:0;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:875:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  875 | score += (vx[seq_or_rev[putative_acceptor]]==3 )?10:0;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
suggadj.c:878:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 | score += ( vx[seq_or_rev[putative_donor+1]]==0 )?3:0;
      |               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
suggadj.c:879:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  879 | score += ( vx[seq_or_rev[putative_acceptor-1]]==2 )?3:0;
      |               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c: In function ‘check_split_codon’:
suggadj.c:985:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  985 | val_assuming_1_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
      |                              ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:986:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  986 |  vx[seq_or_rev[right_starts-2]]*4+
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:987:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  987 |  vx[seq_or_rev[right_starts-1]];
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:998:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  998 | val_assuming_2_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
      |                              ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:999:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  999 |  vx[seq_or_rev[left_ends+2]] * 4 +
      |     ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:1000:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1000 |  vx[seq_or_rev[right_starts-1]];
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c: In function ‘overlapping_fixer’:
suggadj.c:1370:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1370 |     test_val = vx[seq_or_rev[left_exon_ends]]*16 +
      |                   ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:1371:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1371 |      vx[seq_or_rev[right_exon_starts-1]];
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c:1373:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1373 |      test_val += vx[seq_or_rev[right_exon_starts-2]]*4;
      |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c:1375:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1375 |      test_val += vx[seq_or_rev[left_exon_ends+1]]*4;
      |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
At top level:
suggadj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggadj.c,v 6.3 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggest.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggest.c:199:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggest.c: In function ‘get_frames’:
suggest.c:458:14: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  458 |    val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
      |             ~^~~
suggest.c:458:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  458 |    val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
      |                           ~^~~
At top level:
suggest.c:1331:13: warning: ‘ReportSuggestIntervalsError’ defined but not used [-Wunused-function]
 1331 | static void ReportSuggestIntervalsError (SeqRecPtr srp, CharPtr gen_txt)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
suggest.c:1222:1: warning: ‘fprintf_m_stk_entry’ defined but not used [-Wunused-function]
 1222 | fprintf_m_stk_entry(FILE *fp, Int4 index, char *msg)
      | ^~~~~~~~~~~~~~~~~~~
suggest.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggest.c,v 6.14 2009/04/10 17:22:14 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggslp.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggslp.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggslp.c: In function ‘MakeReverseSequence’:
suggslp.c:190:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  190 |   *t++ = r[*--s];
      |            ^~~~
At top level:
suggslp.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggslp.c,v 6.6 2009/04/16 18:35:41 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blast.c:2572:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast.c: In function ‘BlastReevaluateWithAmbiguities’:
blast.c:2954:24: warning: variable ‘query_end’ set but not used [-Wunused-but-set-variable]
 2954 |  Uint1Ptr query_start, query_end, subject_real_start=NULL;
      |                        ^~~~~~~~~
blast.c:2949:16: warning: variable ‘hspcnt’ set but not used [-Wunused-but-set-variable]
 2949 |  Int4 context, hspcnt, hspcnt_max, index, index1, status;
      |                ^~~~~~
blast.c: In function ‘BlastGetVirtualOIDList’:
blast.c:3179:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3179 |         if (virtual_oidlist = rdfp_chain->oidlist) {
      |             ^~~~~~~~~~~~~~~
blast.c: In function ‘BlastGetDbChunk’:
blast.c:3210:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3210 |         if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
      |             ^~~~~~~~~~~~~~~
blast.c: In function ‘BlastCreateQueryDNAP’:
blast.c:4100:11: warning: variable ‘strand_option’ set but not used [-Wunused-but-set-variable]
 4100 |     Uint1 strand_option;
      |           ^~~~~~~~~~~~~
blast.c: In function ‘BlastReapPartialHitlistByEvalue’:
blast.c:6486:10: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 6486 |          else
      |          ^~~~
blast.c:6490:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 6490 |      if( !search->mult_queries )
      |      ^~
blast.c: In function ‘BlastWordFinder_contig’:
blast.c:7094:16: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 7094 |  register Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |                ^~~~~~~~~~~~~
blast.c: In function ‘BlastWordExtend’:
blast.c:7835:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable]
 7835 |  BLAST_Score  leftsum, rightsum, rightscore, leftscore;
      |                                              ^~~~~~~~~
blast.c: In function ‘BlastNewWordExtend’:
blast.c:7982:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable]
 7982 |  BLAST_Score  leftsum, rightsum, rightscore, leftscore;
      |                                              ^~~~~~~~~
blast.c: In function ‘BlastNtWordFinder_mh’:
blast.c:8843:23: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 8843 |         register Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |                       ^~~~~~~~~~~~~
blast.c:8842:103: warning: variable ‘compression_factor’ set but not used [-Wunused-but-set-variable]
 8842 |         Int4            s_pos, q_off, s_off, offset, virtual_wordsize, wordsize, compressed_wordsize, compression_factor;
      |                                                                                                       ^~~~~~~~~~~~~~~~~~
blast.c: In function ‘BlastNtWordFinder’:
blast.c:9076:14: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 9076 |         Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |              ^~~~~~~~~~~~~
blast.c: In function ‘BlastSaveCurrentHitlist’:
blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
10115 |         if( hitlist_max > 1 )
      |           ^
blast.c:9785:7: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable]
 9785 |  Int4 query_length;
      |       ^~~~~~~~~~~~
blast.c: In function ‘SumHSPEvalue’:
blast.c:10588:9: warning: variable ‘gap_size’ set but not used [-Wunused-but-set-variable]
10588 |    Int4 gap_size, num, subject_length;
      |         ^~~~~~~~
blast.c: In function ‘link_hsps’:
blast.c:11267:10: warning: variable ‘frame_change’ set but not used [-Wunused-but-set-variable]
11267 |  Boolean frame_change, linked_set, ignore_small_gaps;
      |          ^~~~~~~~~~~~
At top level:
blast.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast.c,v 6.451 2008/01/25 21:15:22 bealer Exp $";
      |                   ^~~~~
blast.c: In function ‘blastMergeFilterLocs’:
blast.c:3985:16: warning: ‘dup_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3985 |        dup_slp = (SeqLocPtr) dup_slp->data.ptrvalue;
      |        ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast.c: In function ‘BlastLinkHsps’:
blast.c:10455:41: warning: ‘orig_hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10455 |                 search->current_hitlist = orig_hitlist;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastutl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastutl.c:1836:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastutl.c: In function ‘BlastSeqLocFilterEx’:
blastutl.c:7554:11: warning: statement with no effect [-Wunused-value]
 7554 | stop_timer("after repeat filtering");
      |           ^
blastutl.c: In function ‘BlastPreliminaryGappedScore’:
blastutl.c:9853:30: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable]
 9853 |  Int4 index, max_offset = 0, query_length, min_score;
      |                              ^~~~~~~~~~~~
blastutl.c: In function ‘BlastGetGappedScore’:
blastutl.c:10282:11: warning: statement with no effect [-Wunused-value]
10282 | stop_timer("after BlastGappedScoreInternal");
      |           ^
At top level:
blastutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastutl.c,v 6.472 2010/12/10 18:47:12 madden Exp $";
      |                   ^~~~~
blastutl.c: In function ‘BlastNtFindWords’:
blastutl.c:11445:10: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11445 |      end = MIN(end, len-initial_wordsize);
blastutl.c: In function ‘BlastFindWords’:
blastutl.c:11623:8: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11623 |   stop = MIN(stop, len);
blastutl.c:11711:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11711 |     start_score2 += matrix[(Int4) *(str+index2)][*(words+index2)];
      |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11704:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11704 |     start_score = second_score+first_score;
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11695:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11695 |     diff2 += diff;
      |     ~~~~~~^~~~~~~
blastutl.c: In function ‘BlastNewFindWords_Old’:
blastutl.c:11931:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11931 |     start_score2 += MtrxScorePosSearch(search->sbp,
blastutl.c:11924:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11924 |     start_score = second_score+first_score;
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11915:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11915 |     diff2 += diff;
      |     ~~~~~~^~~~~~~
blastutl.c: In function ‘BlastNewFindWordsEx’:
blastutl.c:12124:30: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12124 |                 start_score2 += posMatrix[offset+index2][*(words+index2)];
      |                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:12118:29: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12118 |                 start_score = second_score + first_score;
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:12110:23: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12110 |                 diff2 += diff;
      |                 ~~~~~~^~~~~~~
blastutl.c: In function ‘RealBlastGetGappedAlignmentTraceback’:
blastutl.c:9377:56: warning: ‘seqalign_array’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9377 |                                 seqalign_array[index2] =
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~^
 9378 |                                    SeqAlignFree(seqalign_array[index2]);
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c: In function ‘SumBlastGetGappedAlignmentEx’:
blastutl.c:9670:33: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9670 |   HeapSort(hsp_array+start,(stop-start),sizeof(BLAST_HSPPtr), score_compare_hsps);
      |                            ~~~~~^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastool.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastool.c:946:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastool.c: In function ‘BlastScaleMatrix’:
blastool.c:3032:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 3032 |     else
      |     ^~~~
blastool.c:3035:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 3035 |  if (new_lambda > lambda)
      |  ^~
blastool.c: In function ‘OOFBlastHSPGetNumIdentical’:
blastool.c:6081:9: warning: variable ‘context’ set but not used [-Wunused-but-set-variable]
 6081 |    Int2 context;
      |         ^~~~~~~
At top level:
blastool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastool.c,v 6.292 2007/03/15 20:39:17 madden Exp $";
      |                   ^~~~~
blastool.c: In function ‘BlastCreateVirtualOIDList’:
blastool.c:2556:24: warning: ‘gilist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2556 |     BlastDoubleInt4Ptr gilist, real_gilist = NULL, *real_gilist_ptrs = NULL;
      |                        ^~~~~~
blastool.c: In function ‘BlastInsertList2Heap’:
blastool.c:3595:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3595 |   context = hsp->query_offset / query_length;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
blastool.c: In function ‘BlastFreeHeap’:
blastool.c:3687:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3687 |   context = hsp->query_offset / query_length;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
blastool.c: In function ‘BLASTFilterOverlapRegions’:
blastool.c:4531:24: warning: ‘next_tail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4531 |             tail->next = seqalign;
      |             ~~~~~~~~~~~^~~~~~~~~~
blastool.c: In function ‘BlastPrintAlignInfo’:
blastool.c:4800:23: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4800 |             sap->next = SeqAlignNew();
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~
blastool.c: In function ‘MegaBlastPrintAlignInfo’:
blastool.c:963:17: warning: ‘subject_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  963 | #define fprintf blastool_fprintf
      |                 ^~~~~~~~~~~~~~~~
blastool.c:5046:30: note: ‘subject_seq_buffer’ was declared here
 5046 |    CharPtr query_seq_buffer, subject_seq_buffer;
      |                              ^~~~~~~~~~~~~~~~~~
blastool.c:963:17: warning: ‘query_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  963 | #define fprintf blastool_fprintf
      |                 ^~~~~~~~~~~~~~~~
blastool.c:5046:12: note: ‘query_seq_buffer’ was declared here
 5046 |    CharPtr query_seq_buffer, subject_seq_buffer;
      |            ^~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastconcat.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastconcat.c:89:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastconcat.c: In function ‘BlastMakeFakeBspConcat’:
blastconcat.c:648:12: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
  648 |  SeqLocPtr slp = NULL;
      |            ^~~
At top level:
blastconcat.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastconcat.c,v 1.14 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF splutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from splutil.c:52:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
splutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: splutil.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gapxdrop.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/gapxdrop.h:150,
                 from gapxdrop.c:368:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gapxdrop.c: In function ‘ALIGN_EX’:
gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  864 |       if (s == 1)
      |          ^
gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  867 |       if (s == 2)
      |          ^
At top level:
gapxdrop.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: gapxdrop.c,v 6.76 2003/11/07 21:52:52 dondosha Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg0.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg0.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg0.c: In function ‘g_band0_align’:
bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  273 |       if(leftd >= 1)
      |         ^
At top level:
bandalg0.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg0.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg1.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg1.c: In function ‘gband_quadratic’:
bandalg1.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   54 |   Int4 c, i, j;
      |              ^
bandalg1.c: In function ‘g_band1_align’:
bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  205 |     if(leftd >= 1)
      |       ^
At top level:
bandalg1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg1.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg2.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg2.c: In function ‘gb_linear_align’:
bandalg2.c:208:24: warning: variable ‘misma’ set but not used [-Wunused-but-set-variable]
  208 |   register Int4 match, misma;
      |                        ^~~~~
bandalg2.c:208:17: warning: variable ‘match’ set but not used [-Wunused-but-set-variable]
  208 |   register Int4 match, misma;
      |                 ^~~~~
bandalg2.c:207:18: warning: variable ‘AA’ set but not used [-Wunused-but-set-variable]
  207 |   register Uint1 AA;
      |                  ^~
At top level:
bandalg2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg2.c,v 6.5 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
bandalg2.c: In function ‘gb_linear_align’:
bandalg2.c:576:11: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  576 |  } else if(Y != N) {
      |           ^
bandalg2.c:574:4: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  574 |  if(X != M) {
      |    ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg3.c:37:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg3.c: In function ‘gband_linear_qgap’:
bandalg3.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   54 |   Int4 c, i, j;
      |              ^
At top level:
bandalg3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg3.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg3.c: In function ‘gband_linear_qgap’:
bandalg3.c:314:41: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  314 |         else if(Y != rightd) _INS(rightd-Y)
      |                                         ^
bandalg3.c:185:28: note: ‘Y’ was declared here
  185 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg3.c:313:21: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  313 |   if(X != M) _DEL(M - X)
      |                     ^
bandalg3.c:185:25: note: ‘X’ was declared here
  185 |   Int4 ib, best=MININT, X, Y;
      |                         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg4.c:37:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg4.c: In function ‘g_band4_align_small’:
bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  826 |     if (e == 1)
      |        ^
bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  829 |     if (e == 2)
      |        ^
bandalg4.c:630:8: warning: variable ‘band’ set but not used [-Wunused-but-set-variable]
  630 |   Int4 band, j;
      |        ^~~~
At top level:
bandalg4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg4.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg4.c: In function ‘g_band4_align’:
bandalg4.c:534:22: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  534 |       if(X != M || Y != N) regA = regB = 1;
      |                    ~~^~~~
bandalg4.c:534:12: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  534 |       if(X != M || Y != N) regA = regB = 1;
      |          ~~^~~~
bandalg4.c:562:7: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  562 |       g_band4_align(A, B, r - 1, r + rmid, rmid + 1,
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  563 |      MIN(up, r + rmid), tb, 1, legA, legB, 1, 1, data);
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bandalg4.c:857:37: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  857 |   else if (Y != rightd) _INS(rightd - Y);
      |                                     ^
bandalg4.c:640:28: note: ‘Y’ was declared here
  640 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg4.c:856:6: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  856 |   if (X != M) _DEL(M - X)
      |      ^
bandalg4.c:640:25: note: ‘X’ was declared here
  640 |   Int4 ib, best=MININT, X, Y;
      |                         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg5.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg5.c: In function ‘gband_q3gap’:
bandalg5.c:56:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   56 |   Int4 c, i, j;
      |              ^
bandalg5.c: In function ‘g_band5_align’:
bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  292 |     if (e == 1)
      |        ^
bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  295 |     if (e == 2)
      |        ^
At top level:
bandalg5.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg5.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg5.c: In function ‘gband_q3gap’:
bandalg5.c:320:32: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  320 |   if (Y != rightd) _INS(rightd - Y);
      |                                ^
bandalg5.c:146:28: note: ‘Y’ was declared here
  146 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg5.c:319:22: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  319 |   if (X != M) _DEL(M - X);
      |                      ^
bandalg5.c:146:25: note: ‘X’ was declared here
  146 |   Int4 ib, best=MININT, X, Y;
      |                         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalgn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from bandalgn.c:118:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalgn.c: In function ‘ExtendSeqAlign’:
bandalgn.c:1113:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
 1113 |        DenseDiagPtr  ddp;
      |                      ^~~
bandalgn.c: In function ‘CC_ExtendSeqAlign’:
bandalgn.c:1188:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
 1188 |        DenseDiagPtr  ddp;
      |                      ^~~
At top level:
bandalgn.c:699:14: warning: ‘HSblastna_to_ncbi4na’ defined but not used [-Wunused-variable]
  699 | static Uint1 HSblastna_to_ncbi4na[] = {   1, /* A, 0 */
      |              ^~~~~~~~~~~~~~~~~~~~
bandalgn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalgn.c,v 6.17 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalgn.c: In function ‘LocalBandToEditBlock’:
bandalgn.c:463:20: warning: ‘edit_block’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  463 |   lbsp->edit_block = edit_block;
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bandalgn.c: In function ‘SetLowUpFromBlast’:
bandalgn.c:1053:7: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1053 |    if (maxsc < val) {
      |       ^
bandalgn.c:1060:7: warning: ‘alnlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1060 |    if (maxlen < alnlen) {
      |       ^
bandalgn.c:1070:9: warning: ‘maxdi_up’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1070 |    maxy = MAX(maxy,maxdi_up);
bandalgn.c:1069:9: warning: ‘mindi_low’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1069 |    miny = MIN(miny,mindi_low);
bandalgn.c:1055:10: warning: ‘maxdi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1055 |     maxy = maxdi + width;
      |     ~~~~~^~~~~~~~~~~~~~~
bandalgn.c:1056:10: warning: ‘mindi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1056 |     miny = mindi - width;
      |     ~~~~~^~~~~~~~~~~~~~~
bandalgn.c: In function ‘GetAlignExtremes’:
bandalgn.c:1309:7: warning: ‘y2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1309 |  *yy2 = y2;
      |  ~~~~~^~~~
bandalgn.c:1308:7: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1308 |  *yy1 = y1;
      |  ~~~~~^~~~
bandalgn.c:1307:7: warning: ‘x2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1307 |  *xx2 = x2;
      |  ~~~~~^~~~
bandalgn.c:1306:7: warning: ‘x1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1306 |  *xx1 = x1;
      |  ~~~~~^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastkar.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastkar.c:648:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastkar.c:2373:25: warning: ‘Altschul_prob’ defined but not used [-Wunused-variable]
 2373 | static BLAST_LetterProb Altschul_prob[] = {
      |                         ^~~~~~~~~~~~~
blastkar.c:2347:25: warning: ‘Dayhoff_prob’ defined but not used [-Wunused-variable]
 2347 | static BLAST_LetterProb Dayhoff_prob[] = {
      |                         ^~~~~~~~~~~~
blastkar.c:1121:13: warning: ‘blosum62_20_prefs’ defined but not used [-Wunused-variable]
 1121 | static Int4 blosum62_20_prefs[BLOSUM62_20_VALUES_MAX] = {
      |             ^~~~~~~~~~~~~~~~~
blastkar.c:1053:21: warning: ‘blosum62_20_values’ defined but not used [-Wunused-variable]
 1053 | static Nlm_FloatHi  blosum62_20_values[BLOSUM62_20_VALUES_MAX][8] = {
      |                     ^~~~~~~~~~~~~~~~~~
blastkar.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastkar.c,v 6.115 2006/12/14 17:08:19 madden Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF actutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/actutils.h:103,
                 from actutils.c:232:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
actutils.c: In function ‘SlideToHit’:
actutils.c:346:23: warning: variable ‘done’ set but not used [-Wunused-but-set-variable]
  346 |     Boolean inIsland, done;
      |                       ^~~~
actutils.c:346:13: warning: variable ‘inIsland’ set but not used [-Wunused-but-set-variable]
  346 |     Boolean inIsland, done;
      |             ^~~~~~~~
actutils.c: In function ‘ResolveSpinConflict’:
actutils.c:1484:35: warning: unused variable ‘row2_conflict’ [-Wunused-variable]
 1484 |    Boolean row1_conflict = FALSE, row2_conflict = FALSE;
      |                                   ^~~~~~~~~~~~~
actutils.c:1484:12: warning: unused variable ‘row1_conflict’ [-Wunused-variable]
 1484 |    Boolean row1_conflict = FALSE, row2_conflict = FALSE;
      |            ^~~~~~~~~~~~~
actutils.c: In function ‘ACT_FindBestAlnByDotPlot’:
actutils.c:2002:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 2002 |    Uint1           strand;
      |                    ^~~~~~
actutils.c:2001:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2001 |    Int4            start2;
      |                    ^~~~~~
actutils.c:2000:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2000 |    Int4            start1;
      |                    ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from actutils.c:232:
actutils.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
actutils.c:3132:13: warning: ‘DumpAlignments’ defined but not used [-Wunused-function]
 3132 | static void DumpAlignments (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~
actutils.c:2927:13: warning: ‘MapBioseqToBioseqSpecial’ defined but not used [-Wunused-function]
 2927 | static Int4 MapBioseqToBioseqSpecial(SeqAlignPtr sap, Int4 begin, Int4 fin, Int4 pos, Int4 which_end)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
actutils.c:1654:16: warning: ‘SpinsConflict’ defined but not used [-Wunused-function]
 1654 | static Boolean SpinsConflict (SQN_nPtr spin1, SQN_nPtr spin2, Int4 fuzz, Int4 strand)
      |                ^~~~~~~~~~~~~
actutils.c:1392:13: warning: ‘am_fix_strand’ defined but not used [-Wunused-function]
 1392 | static void am_fix_strand(SeqAlignPtr sap, Uint1 strand1, Uint1 strand2)
      |             ^~~~~~~~~~~~~
actutils.c:1375:16: warning: ‘am_isa_gap’ defined but not used [-Wunused-function]
 1375 | static Boolean am_isa_gap(Int4 start, Int4 prevstop, Uint1 strand)
      |                ^~~~~~~~~~
actutils.c:749:13: warning: ‘StateTableSearch’ defined but not used [-Wunused-function]
  749 | static void StateTableSearch (TextFsaPtr tbl, CharPtr txt, Int4Ptr state, Int4 pos, ACT_sitelistPtr PNTR asp_prev, ACT_sitelistPtr PNTR asp_head)
      |             ^~~~~~~~~~~~~~~~
actutils.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: actutils.c,v 6.56 2008/10/22 17:19:22 bollin Exp $";
      |                   ^~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/actutils.h:103,
                 from actutils.c:232:
actutils.c: In function ‘GetOldBlastAlignmentPiece’:
../include/ncbimem.h:232:23: warning: ‘program’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
actutils.c:3089:25: note: ‘program’ was declared here
 3089 |    CharPtr              program;
      |                         ^~~~~~~
actutils.c: In function ‘ACT_FindPeakScores’:
actutils.c:1342:31: warning: ‘ats_newprev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1342 |             ats_newprev->next = ats_new;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~
actutils.c:1321:28: warning: ‘ats_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1321 |             ats_prev->next = ats;
      |             ~~~~~~~~~~~~~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF posit.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from posit.c:402:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
posit.c: In function ‘posDemographics’:
posit.c:1110:17: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable]
 1110 |    Int4 numseq, numSeqAligns;  /*number of matching sequences and SeqAligns*/
      |                 ^~~~~~~~~~~~
posit.c: In function ‘posFreqsToMatrix’:
posit.c:1679:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4)) + (sizetype)((unsigned int)a * 4))’ may be undefined [-Wsequence-point]
 1679 |      posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
posit.c: In function ‘posComputePseudoFreqs’:
posit.c:1840:16: warning: variable ‘lambda’ set but not used [-Wunused-but-set-variable]
 1840 |    Nlm_FloatHi lambda; /*Karlin-Altschul parameter*/
      |                ^~~~~~
posit.c: In function ‘WposComputation’:
posit.c:1988:13: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable]
 1988 |     Int4 i, numSeqAligns, numseq, qlength;
      |             ^~~~~~~~~~~~
posit.c: In function ‘posPrintInformation’:
posit.c:2319:8: warning: variable ‘querySize’ set but not used [-Wunused-but-set-variable]
 2319 |   Int4 querySize;
      |        ^~~~~~~~~
posit.c: In function ‘posFindAlignmentDimensions’:
posit.c:3064:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3064 |     fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3070:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3070 |     fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3079:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3079 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3086:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3086 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c: In function ‘posPreprocessAlignment’:
posit.c:3137:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3137 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3152:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3152 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c: In function ‘posReadAlignment’:
posit.c:3253:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3253 |  fgets(nextline, ALIGN_LINE_LENGTH,checkFile);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
posit.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: posit.c,v 6.88 2011/10/25 14:33:16 boratyng Exp $";
      |                   ^~~~~
posit.c: In function ‘posFindAlignmentDimensions’:
posit.c:3090:20: warning: ‘testCountSeqs’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3090 |       testCountSeqs++;
      |       ~~~~~~~~~~~~~^~
posit.c: In function ‘posComputeSequenceWeights’:
posit.c:1447:36: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1447 |        posSearch->posSigma[qplace] = intervalSigma;
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
posit.c:1424:11: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1424 |        if (Sigma > 0) {
      |           ^
posit.c: In function ‘posReadCheckpoint’:
posit.c:2873:28: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2873 |   if (i < pssm->numColumns || j < pssm->numRows) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
posit.c:2702:11: note: ‘j’ was declared here
 2702 |   Int4 i, j, c;
      |           ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from lookup.c:308:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
lookup.c: In function ‘lookup_get_memory’:
lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  555 |             Uint8 extra = ((Uint8)mem_struct->current) & ((Uint8) 63);
      |                            ^
In file included from ../include/blastdef.h:922,
                 from ../include/blast.h:470,
                 from lookup.c:309:
lookup.c: In function ‘MegaBlastBuildLookupTable’:
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1047:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1047 |                                   GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
      |                                   ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1051:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1051 |                                   GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
      |                                   ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1078:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1078 |                               GET_EXTRA_CODE_18_OPT(seq) | bit0;
      |                               ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1082:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1082 |                               GET_EXTRA_CODE_18_OPT(seq) | bit0;
      |                               ^~~~~~~~~~~~~~~~~~~~~
lookup.c:914:25: warning: variable ‘extra_code’ set but not used [-Wunused-but-set-variable]
  914 |    register Int4 ecode, extra_code;
      |                         ^~~~~~~~~~
At top level:
lookup.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: lookup.c,v 6.59 2005/07/28 14:57:10 coulouri Exp $";
      |                   ^~~~~
lookup.c: In function ‘MegaBlastBuildLookupTable’:
lookup.c:975:10: warning: ‘word_weight’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  975 |       if (word_weight >= 12) {
      |          ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF readdb.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
readdb.c: In function ‘readdb_parse_db_names’:
readdb.c:2503:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2503 |         if (**filenames == '"')
      |            ^
readdb.c: In function ‘s_GetBlastDirInfo’:
readdb.c:2734:32: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
 2734 |     memset(blast_dir, 0, sizeof(blast_dir));
      |                                ^
readdb.c: In function ‘IndexFileExists’:
readdb.c:3320:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3320 |         if (rdfp->cih)
      |         ^~
readdb.c:3326:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3326 |             if (rdbap->first_oid > 0) {
      |             ^~
readdb.c:3400:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3400 |         if (rdfp->cih && rdfp->aliasfilebit == 0)
      |         ^~
readdb.c:3406:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3406 |             if (rdbap->first_oid > 0) {
      |             ^~
readdb.c: In function ‘FindBlastDBFileEx’:
readdb.c:3480:33: warning: unused variable ‘envp’ [-Wunused-variable]
 3480 |     CharPtr    buffer, buffer1, envp = NULL;
      |                                 ^~~~
readdb.c: In function ‘readdb_new_internalEx’:
readdb.c:3558:25: warning: unused variable ‘envp’ [-Wunused-variable]
 3558 |     CharPtr    charptr, envp = NULL;
      |                         ^~~~
readdb.c: In function ‘readdb_get_link’:
readdb.c:4752:12: warning: variable ‘loaded_new’ set but not used [-Wunused-but-set-variable]
 4752 |    Boolean loaded_new = FALSE;
      |            ^~~~~~~~~~
readdb.c:4751:24: warning: variable ‘last_used’ set but not used [-Wunused-but-set-variable]
 4751 |    ReadDBFILEPtr last, last_used, rdfp_var;
      |                        ^~~~~~~~~
readdb.c: In function ‘readdb_check_oid’:
readdb.c:4896:38: warning: comparisons like ‘X<=Y<=Z’ do not have their mathematical meaning [-Wparentheses]
 4896 |                  if (rdfp_var->start <= oid <= rdfp_var->stop)
      |                      ~~~~~~~~~~~~~~~~^~~~~~
readdb.c: In function ‘readdb_seqid2fasta’:
readdb.c:5236:22: warning: unused variable ‘dummy_gi’ [-Wunused-variable]
 5236 |                 Int4 dummy_gi = 0; /* Not used, should have been handled above. */
      |                      ^~~~~~~~
readdb.c:5180:13: warning: unused variable ‘chptr’ [-Wunused-variable]
 5180 |     CharPtr chptr = NULL;
      |             ^~~~~
readdb.c: In function ‘FDBuildOldStyleDefline’:
readdb.c:6366:33: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
 6366 |     MemSet(defline, '\0', sizeof(defline));
      |                                 ^
readdb.c: In function ‘PrintDbInformationWithRID’:
readdb.c:7571:14: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 7571 |     if (rdfp == FALSE)
      |              ^~
readdb.c:7571:9: note: did you mean to dereference the pointer?
 7571 |     if (rdfp == FALSE)
      |         ^
readdb.c: In function ‘FDBLoadMembershipsTable’:
readdb.c:8265:21: warning: variable ‘fn_name’ set but not used [-Wunused-but-set-variable]
 8265 |         const char* fn_name = NULL;
      |                     ^~~~~~~
readdb.c: In function ‘SeqIdE2Index’:
readdb.c:8613:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 8613 |     if ((tsip->version > 0) && (tsip->release == NULL))
      |     ^~
readdb.c:8615:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 8615 |         break;
      |         ^~~~~
readdb.c:8618:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 8618 |     if (tsip->version > 0)
      |     ^~
readdb.c:8620:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 8620 |         break;
      |         ^~~~~
readdb.c:8577:13: warning: unused variable ‘tmp’ [-Wunused-variable]
 8577 |     CharPtr tmp, ptr=NULL;
      |             ^~~
readdb.c:8576:11: warning: unused variable ‘tmptype’ [-Wunused-variable]
 8576 |     Uint1 tmptype;
      |           ^~~~~~~
readdb.c: In function ‘SeqIdSetE2Index’:
readdb.c:8881:14: warning: variable ‘oldanp’ set but not used [-Wunused-but-set-variable]
 8881 |     SeqIdPtr oldanp;
      |              ^~~~~~
readdb.c: In function ‘FindDBbyGI’:
readdb.c:11397:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
11397 |    if (gi > cih->maxgi)
      |    ^~
readdb.c:11400:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
11400 |     cigi = cih->ci + gi;
      |     ^~~~
readdb.c: In function ‘Fastacmd_Search_ex’:
readdb.c:12080:22: warning: variable ‘guess_gi’ set but not used [-Wunused-but-set-variable]
12080 |     Int4             guess_gi = -1;
      |                      ^~~~~~~~
readdb.c: In function ‘DumpOneSequence’:
readdb.c:12407:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
12407 |      fprintf(fp, "%d\n", gi->data.intvalue);
      |                   ~^     ~~~~~~~~~~~~~~~~~
      |                    |             |
      |                    int           Nlm_Int8 {aka long long int}
      |                   %lld
readdb.c:12417:14: warning: unused variable ‘numeric_id’ [-Wunused-variable]
12417 |      Boolean numeric_id = GetAccessionVersionFromSeqId(accn, &gi, &id, TRUE);
      |              ^~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from readdb.c:2067:
readdb.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
readdb.c:12829:1: warning: ‘readdb_preload_index’ defined but not used [-Wunused-function]
12829 | readdb_preload_index (ReadDBFILEPtr rdfp, Int4 first_db_seq,
      | ^~~~~~~~~~~~~~~~~~~~
In file included from readdb.c:2060:
../include/ncbisami.h:191:14: warning: ‘OneBit’ defined but not used [-Wunused-variable]
  191 | static Uint1 OneBit[] = {0x80 , 0x40, 0x20, 0x10, 0x8, 0x4, 0x2, 0x1};
      |              ^~~~~~
../include/ncbisami.h:183:14: warning: ‘PowersOfTwo’ defined but not used [-Wunused-variable]
  183 | static Uint4 PowersOfTwo[] = {01,02,04,010,020,040,0100,0200,0400,01000,
      |              ^~~~~~~~~~~
readdb.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: readdb.c,v 6.549 2016/09/02 15:04:59 ucko Exp $";
      |                   ^~~~~
readdb.c: In function ‘readdb_read_alias_file’:
readdb.c:3084:53: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3084 |                         sprintf(full_buffer, "%s%c%s", file_path,
      |                                                     ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3090:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3090 |                             sprintf(full_buffer, "%s%c%s", file_path,
      |                                                         ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2994:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2994 |                             sprintf(full_buffer, "%s%c%s", file_path,
      |                                                         ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘Int4ListReadFromFile’:
readdb.c:2656:31: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2656 |     sprintf(file_name, "%s%s%s", blast_dir, DIRDELIMSTR, FileNameFind(fname));
      |                               ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘ReadDBOpenMHdrAndSeqFiles’:
readdb.c:2277:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2277 |       sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2296:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2296 |       sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2252:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2252 |      sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2252:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2252 |      sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2259:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2259 |       sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘readdb_get_taxonomy_names’:
readdb.c:5679:28: warning: ‘ufp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5679 |             ufp_last->next = ufp;
      |             ~~~~~~~~~~~~~~~^~~~~
readdb.c: In function ‘readdb_get_descriptor’:
readdb.c:6668:44: warning: ‘new_defline_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6668 |                         new_defline_length += StringLen(defline) + StringLen(id_buf);
      |                                            ^~
readdb.c: In function ‘readdb_new_internalEx’:
readdb.c:3600:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3600 |         sprintf(buffer1, "%s%s%s", buffer, DIRDELIMSTR, filename);
      |                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3671:25: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3671 |     sprintf(buffer, "%s.%cin", rdfp->full_filename, is_prot? 'p':'n');
      |                         ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3811:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3811 |     sprintf(buffer,  "%s.%cnd", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3812:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3812 |     sprintf(buffer1, "%s.%cni", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3825:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3825 |     sprintf(buffer,  "%s.%csd", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3826:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3826 |     sprintf(buffer1, "%s.%csi", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3845:29: warning: ‘.ppd’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
 3845 |         sprintf(buffer,  "%s.ppd", rdfp->full_filename);
      |                             ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3846:29: warning: ‘.ppi’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
 3846 |         sprintf(buffer1, "%s.ppi", rdfp->full_filename);
      |                             ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘GetAccList’:
readdb.c:11821:29: warning: ‘AccListLast’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11821 |           AccListLast->next = AccListTmp;
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
readdb.c: In function ‘FD_ConstructMultivolumeDBList’:
readdb.c:12690:31: warning: ‘%03ld’ directive writing between 3 and 10 bytes into a region of size 9 [-Wformat-overflow=]
12690 |             sprintf(numstr, ".%03ld ", (long) i);
      |                               ^~~~~
readdb.c:12690:29: note: directive argument in the range [100, 2147483646]
12690 |             sprintf(numstr, ".%03ld ", (long) i);
      |                             ^~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 13 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisam.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbisam.c:198:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbisam.c: In function ‘ISAMMakeStringIndex’:
ncbisam.c:842:22: warning: unused variable ‘file_pos’ [-Wunused-variable]
  842 |                 Int4 file_pos = ftell(data->db_fd);
      |                      ^~~~~~~~
ncbisam.c: In function ‘ISAMInitSearch’:
ncbisam.c:1399:10: warning: variable ‘reserved2’ set but not used [-Wunused-but-set-variable]
 1399 |     Int4 reserved2;
      |          ^~~~~~~~~
At top level:
ncbisam.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: ncbisam.c,v 6.34 2007/11/06 19:20:06 coulouri Exp $";
      |                   ^~~~~
ncbisam.c: In function ‘ISAMMakeIndex’:
ncbisam.c:984:21: warning: ‘KeyDataInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  984 |     NISAMKeyDataPtr KeyDataInfo, KeyDataSamples;
      |                     ^~~~~~~~~~~
ncbisam.c:983:14: warning: ‘KeyInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  983 |     Uint4Ptr KeyInfo, KeySamples;
      |              ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
ncbisam.c: In function ‘ISAMCreateDatabase’:
../include/ncbimem.h:232:23: warning: ‘prevterm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1181:13: note: ‘prevterm’ was declared here
 1181 |     CharPtr prevterm;
      |             ^~~~~~~~
In file included from ../include/ncbimsg.h:78,
                 from ../include/ncbi.h:60,
                 from ncbisam.c:198:
../include/ncbierr.h:246:23: warning: ‘field_in’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  246 | #define ErrLogPrintf  Nlm_ErrLogPrintf
      |                       ^~~~~~~~~~~~~~~~
ncbisam.c:1177:37: note: ‘field_in’ was declared here
 1177 |     unsigned long uid_in, uid_last, field_in;
      |                                     ^~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
ncbisam.c: In function ‘NISAMSearch’:
../include/ncbimem.h:232:23: warning: ‘KeyDataPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1622:55: note: ‘KeyDataPageStart’ was declared here
 1622 |     NISAMKeyDataPtr KeyDataPage=NULL, KeyDataSamples, KeyDataPageStart;
      |                                                       ^~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
../include/ncbimem.h:232:23: warning: ‘KeyPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1619:34: note: ‘KeyPageStart’ was declared here
 1619 |     Int4 NumElements, *KeyPage, *KeyPageStart;
      |                                  ^~~~~~~~~~~~
ncbisam.c:1750:36: warning: ‘KeyPage’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1750 |             Key = SwapUint4(KeyPage[current]);
      |                                    ^
ncbisam.c:1593:24: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1593 |     *Start = SampleNum * data->PageSize;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~
ncbisam.c:1618:27: note: ‘SampleNum’ was declared here
 1618 |     Int4 Start = 0, Stop, SampleNum;
      |                           ^~~~~~~~~
ncbisam.c: In function ‘SISAMSearch’:
ncbisam.c:2373:8: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2373 |     if ( (SampleNum < 0) || (SampleNum >= data->NumSamples)) {
      |        ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisort.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbisort.h:62,
                 from ../include/ncbisrti.h:60,
                 from ncbisort.c:86:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbisort.c: In function ‘SORTFracCompare’:
ncbisort.c:699:12: warning: type defaults to ‘int’ in declaration of ‘tmpa’ [-Wimplicit-int]
  699 |   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
      |            ^~~~
ncbisort.c:699:30: warning: type defaults to ‘int’ in declaration of ‘tmpb’ [-Wimplicit-int]
  699 |   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
      |                              ^~~~
In file included from ncbisort.c:86:
ncbisort.c: At top level:
../include/ncbisrti.h:213:13: warning: ‘inthandler’ declared ‘static’ but never defined [-Wunused-function]
  213 | static void inthandler(int i);
      |             ^~~~~~~~~~
ncbisort.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: ncbisort.c,v 6.9 2012/08/22 23:02:39 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salign.h:10,
                 from salign.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salign.c: In function ‘BandAlignTwoSeqLocsFunc’:
salign.c:173:13: warning: variable ‘is_prot’ set but not used [-Wunused-but-set-variable]
  173 |   Boolean   is_prot;
      |             ^~~~~~~
salign.c: In function ‘SortBlastHits’:
salign.c:391:15: warning: variable ‘totalvalmax’ set but not used [-Wunused-but-set-variable]
  391 |               totalvalmax = INT4_MAX,
      |               ^~~~~~~~~~~
salign.c: In function ‘link_solution’:
salign.c:1188:15: warning: unused variable ‘first’ [-Wunused-variable]
 1188 |   Boolean     first = TRUE;
      |               ^~~~~
At top level:
salign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: salign.c,v 6.11 2009/01/21 17:09:18 bollin Exp $";
      |                   ^~~~~
salign.c: In function ‘SortBlastHits’:
salign.c:455:6: warning: ‘salpdup’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  455 |      SeqAlignSetFree (salpdup);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~
salign.c: In function ‘TranslateSeqLoc.constprop’:
salign.c:660:10: warning: ‘slpp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  660 |   return slpp;
      |          ^~~~
salign.c: In function ‘BlastBandAlignTwoSeqLocs.constprop’:
salign.c:1433:17: warning: ‘tail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1433 |      tail->next = salptmp;
      |      ~~~~~~~~~~~^~~~~~~~~
salign.c:1408:15: note: ‘tail’ was declared here
 1408 |               tail,
      |               ^~~~
salign.c:1348:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |          intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1301:30: note: ‘stop’ was declared here
 1301 |   Int4        start, start1, stop;
      |                              ^~~~
salign.c:1348:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |          intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1301:22: note: ‘start1’ was declared here
 1301 |   Int4        start, start1, stop;
      |                      ^~~~~~
salign.c:1270:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1270 |          intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1229:30: note: ‘stop’ was declared here
 1229 |   Int4        start, start1, stop;
      |                              ^~~~
salign.c:1270:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1270 |          intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1229:22: note: ‘start1’ was declared here
 1229 |   Int4        start, start1, stop;
      |                      ^~~~~~
salign.c: In function ‘SeqLocListToSeqAlign’:
salign.c:1670:24: warning: ‘master_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1670 |            salpblast = BlastTwoSeqLocs (master_slp, slp, is_prot, msp);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salptool.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from salptool.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salptool.c: In function ‘MergeTwoDspBySIM4’:
salptool.c:285:10: warning: variable ‘has_overlap’ set but not used [-Wunused-but-set-variable]
  285 |  Boolean has_overlap;
      |          ^~~~~~~~~~~
salptool.c:281:7: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
  281 |  Int4 gap=0,gap_1, gap_2;
      |       ^~~
salptool.c: In function ‘extend_dsp_ends’:
salptool.c:1329:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1329 |                     else
      |                     ^~~~
salptool.c:1331:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1331 |    if(extend_len > 0)
      |    ^~
salptool.c:1346:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1346 |                     else
      |                     ^~~~
salptool.c:1348:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1348 |    if(extend_len > 0)
      |    ^~
salptool.c:1363:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1363 |                     else
      |                     ^~~~
salptool.c:1365:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1365 |    if(extend_len > 0)
      |    ^~
salptool.c:1380:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1380 |                     else
      |                     ^~~~
salptool.c:1382:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1382 |    if(extend_len > 0)
      |    ^~
In file included from ../include/sqnutils.h:51,
                 from salptool.c:12:
salptool.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salptool.c:14:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salptool.c:1518:24: warning: ‘OrderBestHits’ defined but not used [-Wunused-function]
 1518 | static int LIBCALLBACK OrderBestHits(Pointer ptr1, Pointer ptr2)
      |                        ^~~~~~~~~~~~~
salptool.c:1468:13: warning: ‘showtextalign_fromalign’ defined but not used [-Wunused-function]
 1468 | static void showtextalign_fromalign (SeqAlignPtr salp, CharPtr path, FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
salptool.c:1453:13: warning: ‘getlengthforid’ defined but not used [-Wunused-function]
 1453 | static Int4 getlengthforid (SeqIdPtr sip)
      |             ^~~~~~~~~~~~~~
salptool.c:1267:16: warning: ‘need_recompute’ defined but not used [-Wunused-function]
 1267 | static Boolean need_recompute(SeqAlignPtr align, Int4 m_len, Int4 s_len)
      |                ^~~~~~~~~~~~~~
salptool.c:838:13: warning: ‘SeqLocTrimPolyATail’ defined but not used [-Wunused-function]
  838 | static void SeqLocTrimPolyATail(SeqLocPtr loc_2, BioseqPtr bsp_2) {
      |             ^~~~~~~~~~~~~~~~~~~
salptool.c:46:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function]
   46 | static void SeqAnnotWrite(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~
salptool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: salptool.c,v 6.57 2008/07/07 18:52:31 bollin Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from urkutil.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkutil.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkpcc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkpcc.h:54,
                 from urkpcc.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkpcc.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkpcc.c,v 6.13 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkptpf.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from urkptpf.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkptpf.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkptpf.c,v 6.33 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkepi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkepi.h:54,
                 from urkepi.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkepi.c: In function ‘PredictEpiI0’:
urkepi.c:214:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  214 |       epip->epiarray[*seq] += 1;
      |                      ^~~~
urkepi.c:239:59: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  239 |       episcore = DownArrayScore (episcore, epip->epiarray[*seq]);
      |                                                           ^~~~
urkepi.c:240:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  240 |       epip->epiarray[*seq] += 1;
      |                      ^~~~
urkepi.c:241:57: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  241 |       episcore = UpArrayScore (episcore, epip->epiarray[*seq]);
      |                                                         ^~~~
urkepi.c:263:59: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  263 |       episcore = DownArrayScore (episcore, epip->epiarray[*(seq-window)]);
      |                                                           ^~~~~~~~~~~~~
urkepi.c:264:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  264 |       epip->epiarray[*(seq-window)] -= 1;
      |                      ^~~~~~~~~~~~~
urkepi.c:265:57: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  265 |       episcore = UpArrayScore (episcore, epip->epiarray[*(seq-window)]);
      |                                                         ^~~~~~~~~~~~~
urkepi.c: In function ‘OptimizeEpiComp’:
urkepi.c:605:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  605 |           bin[seq[i]] += 1;
      |               ~~~^~~
urkepi.c:621:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  621 |           bin[seq[i]] += 1;
      |               ~~~^~~
urkepi.c:651:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  651 |       if (fbin[seq[i]] > expect)
      |                ~~~^~~
urkepi.c:657:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  657 |       if (fbin[seq[i]] > expect)
      |                ~~~^~~
urkepi.c: In function ‘OptimizeEpiHP’:
urkepi.c:782:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  782 |             epip->epiarray[seq[j]] += 1;
      |                            ~~~^~~
urkepi.c:797:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  797 |             epip->epiarray[seq[j]] += 1;
      |                            ~~~^~~
urkepi.c:837:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  837 |           epip->epiarray[seq[n]] -= 1;
      |                          ~~~^~~
urkepi.c: In function ‘OptimizeEpiProbFunc’:
urkepi.c:982:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  982 |             epip->epiarray[seq[n]] += 1;
      |                            ~~~^~~
urkepi.c:994:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  994 |             epip->epiarray[seq[n]] += 1;
      |                            ~~~^~~
At top level:
urkepi.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkepi.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
urkepi.c: In function ‘FilterEpi’:
urkepi.c:1053:21: warning: ‘right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1053 |         cfap->right = right;
      |         ~~~~~~~~~~~~^~~~~~~
urkepi.c:936:56: note: ‘right’ was declared here
  936 |   Int4      i, n, j, k, start, stop, loop, fact, left, right;
      |                                                        ^~~~~
urkepi.c:1052:20: warning: ‘left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1052 |         cfap->left = left;
      |         ~~~~~~~~~~~^~~~~~
urkepi.c:936:50: note: ‘left’ was declared here
  936 |   Int4      i, n, j, k, start, stop, loop, fact, left, right;
      |                                                  ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkfltr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkfltr.h:51,
                 from urkfltr.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkfltr.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkfltr.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkdust.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkdust.h:51,
                 from urkdust.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkdust.c: In function ‘DustMe_h’:
urkdust.c:196:42: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  196 |             (dcvp->curlevel <= newlevel) && dcvp->curend == loop+1)
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
urkdust.c: In function ‘DustForGraph’:
urkdust.c:776:17: warning: variable ‘drphead’ set but not used [-Wunused-but-set-variable]
  776 |   DustRegionPtr drphead;
      |                 ^~~~~~~
At top level:
urkdust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkdust.c,v 6.10 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urksigu.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urksigu.h:57,
                 from urksigu.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urksigu.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urksigu.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seg.c
seg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: seg.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
seg.c: In function ‘getprob’:
seg.c:935:15: warning: ‘ans2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  935 |    ans = ans1 + ans2 - totseq;
      |          ~~~~~^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkbias.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from urkbias.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkbias.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkbias.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkcnsrt.h:60,
                 from urkcnsrt.c:80:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkcnsrt.c:1203:13: warning: ‘ScanFrame’ defined but not used [-Wunused-function]
 1203 | static void ScanFrame (BioseqPtr bsp, SeqLocPtr slp, Int4 frame,
      |             ^~~~~~~~~
urkcnsrt.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkcnsrt.c,v 6.21 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
urkcnsrt.c: In function ‘Scan3Frames’:
urkcnsrt.c:1385:5: warning: ‘length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1385 |     for (i = n; i < length; i++)
      |     ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urktree.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urktree.h:51,
                 from urktree.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urktree.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urktree.c,v 6.6 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pseed3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pseed3.c:176:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pseed3.c: In function ‘SeedPruneHitsFromSeedReturn’:
pseed3.c:230:17: warning: variable ‘curSegs’ set but not used [-Wunused-but-set-variable]
  230 |     DenseSegPtr curSegs, testSegs; /*Used to extract ids from curSeqAlign, testSeqAlign*/
      |                 ^~~~~~~
pseed3.c: In function ‘seedEngineCore’:
pseed3.c:507:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  507 |     while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
      |            ^~~~~~~
pseed3.c: In function ‘output_hits’:
pseed3.c:1202:10: warning: variable ‘posBaseIndex’ set but not used [-Wunused-but-set-variable]
 1202 |     Int4 posBaseIndex; /*loop index for copying pos results arrays*/
      |          ^~~~~~~~~~~~
pseed3.c: In function ‘init_order’:
pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1483 |  seedSearch->order[seedSearch->pchars[i]] = i;
      |                                      ^
pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1483 |  seedSearch->order[seedSearch->pchars[i]] = i;
      |                    ~~~~~~~~~~~~~~~~~~^~~
pseed3.c:1487:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1487 |         seedSearch->charMultiple[i] = 0;
      |                                 ^
pseed3.c:1489:30: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1489 |  if (seedSearch->standardProb[i] > seedepsilon) {
      |                              ^
pseed3.c:1490:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1490 |    matrixRow = matrix[i];
      |                      ^
pseed3.c:1493:34: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1493 |      if (seedSearch->standardProb[j] > seedepsilon)
      |                                  ^
pseed3.c:1494:42: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1494 |        rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
      |                                          ^
pseed3.c:1494:86: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1494 |        rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
      |                                                                                      ^
pseed3.c:1496:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1496 |    seedSearch->charMultiple[i] = rowSum;
      |                            ^
At top level:
pseed3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pseed3.c,v 6.54 2008/10/31 18:51:07 madden Exp $";
      |                   ^~~~~
pseed3.c: In function ‘seedParallelFill’:
pseed3.c:712:68: warning: iteration 100 invokes undefined behavior [-Waggressive-loop-optimizations]
  712 |      returnData->seedSearch->name_space[i] = seedSearch->name_space[i];
      |                                              ~~~~~~~~~~~~~~~~~~~~~~^~~
pseed3.c:711:4: note: within this loop
  711 |    for( i = 0; i <= BUF_SIZE; i++)
      |    ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pattern1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pattern1.c:80:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pattern1.c: In function ‘init_pattern’:
pattern1.c:286:70: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  286 |      positionProbability = seedSearch->standardProb[seedSearch->order[c]];
      |                                                     ~~~~~~~~~~~~~~~~~^~~
pattern1.c:303:71: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  303 |      positionProbability += seedSearch->standardProb[seedSearch->order[c]];
      |                                                      ~~~~~~~~~~~~~~~~~^~~
pattern1.c:317:71: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  317 |      positionProbability -= seedSearch->standardProb[seedSearch->order[c]];
      |                                                      ~~~~~~~~~~~~~~~~~^~~
pattern1.c: In function ‘find_hitsS_DNA’:
pattern1.c:534:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  534 |     if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
      |         ^~~
pattern1.c:547:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  547 |   if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
      |       ^~~
pattern1.c: At top level:
pattern1.c:744:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
  744 | static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch)
      |        ^~~
pattern1.c: In function ‘and’:
pattern1.c:750:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  750 |       if (result[i] = (a[i] & b[i]))
      |           ^~~~~~
pattern1.c: In function ‘align’:
pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1102 |    if (leftd >= 1)
      |       ^
pattern1.c: In function ‘pat_output’:
pattern1.c:1637:2: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1637 |  else
      |  ^~~~
pattern1.c:1639:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1639 |           ValNodeCopyStr(info_vnp, 0, buffer);
      |           ^~~~~~~~~~~~~~
At top level:
pattern1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pattern1.c,v 6.22 2006/08/04 21:11:17 papadopo Exp $";
      |                   ^~~~~
pattern1.c: In function ‘align’:
pattern1.c:1158:8: warning: ‘CDrow’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1158 |  score = (CDrow-1)->CC;
      |  ~~~~~~^~~~~~~~~~~~~~~
pattern1.c: In function ‘get_patLL’:
pattern1.c:1393:5: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1393 |     for (j = 0; j < pos; j+= wordIndex) {
      |     ^~~
pattern1.c: In function ‘get_patL’:
pattern1.c:1348:10: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |     *end = wordIndex*BITS_PACKED_PER_WORD+j;
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pattern1.c: In function ‘init_pattern’:
pattern1.c:359:39: warning: ‘tj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  359 |  patternSearch->inputPatternMasked[i] = tempInputPatternMasked[i];
      |  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
pattern1.c: In function ‘align_of_pattern’:
pattern1.c:1506:23: warning: ‘data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1506 |        local_score += ALIGN_B(querySeq-1, dbSeq-1, hitArray1[wordIndex+1], hitArray2[wordIndex+1],
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1507 |       BAND_LOW, BAND_HIGH, matrix, gap_open, gap_extend, alignScript, data);
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF impatool.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from impatool.c:73:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
impatool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: impatool.c,v 6.16 2006/06/30 18:44:40 camacho Exp $";
      |                   ^~~~~
In file included from ../include/ncbi.h:59,
                 from impatool.c:73:
impatool.c: In function ‘IMPALAPrintHelp’:
../include/ncbimem.h:232:23: warning: ‘ret_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
impatool.c:288:10: note: ‘ret_buffer’ was declared here
  288 |  CharPtr ret_buffer;
      |          ^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF posit2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from posit2.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
posit2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: posit2.c,v 6.12 2006/09/18 20:54:27 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mbalign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/mbalign.h:4,
                 from mbalign.c:176:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mbalign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: mbalign.c,v 6.43 2006/02/02 17:57:34 papadopo Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vecscrn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vecscrn.h:74,
                 from vecscrn.c:103:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vecscrn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: vecscrn.c,v 6.137 2005/12/27 14:46:44 madden Exp $";
      |                   ^~~~~
vecscrn.c: In function ‘VSPrintOverviewFromSeqLocs’:
vecscrn.c:1078:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1078 |   while (tmp)
      |         ^
vecscrn.c: In function ‘VSPrintListFromSeqLocs’:
vecscrn.c:1188:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1188 |   while (tmp)
      |         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mblast.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mblast.c:710:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mblast.c: In function ‘BioseqMegaBlastEngineCore’:
mblast.c:961:12: warning: statement with no effect [-Wunused-value]
  961 |  stop_timer("BioseqBlastEngineCore: before do_the_blast_run()");
      |            ^
mblast.c:987:12: warning: statement with no effect [-Wunused-value]
  987 |  stop_timer("MegaBlastEngineCore: after do_the_blast_run()");
      |            ^
mblast.c:942:14: warning: variable ‘seqalign’ set but not used [-Wunused-but-set-variable]
  942 |  SeqAlignPtr seqalign, PNTR seqalignp;
      |              ^~~~~~~~
mblast.c: In function ‘MegaBlastSetUpSearchInternalByLoc’:
mblast.c:1167:16: warning: variable ‘avglen’ set but not used [-Wunused-but-set-variable]
 1167 |    Nlm_FloatHi avglen;
      |                ^~~~~~
mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’:
mblast.c:1829:14: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
 1829 |    SeqLocPtr slp;
      |              ^~~
mblast.c: In function ‘MegaBlastWordFinder_disc_1b’:
mblast.c:2372:32: warning: variable ‘mask’ set but not used [-Wunused-but-set-variable]
 2372 |    register Int4 s_off, ecode, mask, q_off, extra_code;
      |                                ^~~~
At top level:
mblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: mblast.c,v 6.215 2006/09/21 13:42:37 madden Exp $";
      |                   ^~~~~
mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’:
mblast.c:1864:19: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1864 |         sap->next = seqalign_var;
      |         ~~~~~~~~~~^~~~~~~~~~~~~~
mblast.c: In function ‘MegaBlastWordFinder_disc’:
mblast.c:2250:53: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2250 |                        (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
      |                                              ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2151:47: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2151 |          for (q_off = lookup->mb_lt->hashtable[ecode1]; q_off>0;
      |                                               ^
mblast.c: In function ‘MegaBlastWordFinder’:
mblast.c:2620:54: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2620 |                         (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
      |                                               ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2373:17: note: ‘ecode2’ was declared here
 2373 |    Int4 ecode1, ecode2;
      |                 ^~~~~~
mblast.c:2475:52: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2475 |                       (((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0)
      |                                             ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2373:9: note: ‘ecode1’ was declared here
 2373 |    Int4 ecode1, ecode2;
      |         ^~~~~~
mblast.c: In function ‘MegaBlastGapInfoToSeqAlign’:
mblast.c:3504:16: warning: ‘seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3504 |    SeqAlignPtr seqalign, seqalign_var, sap;
      |                ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF rpsutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rpsutil.c: In function ‘RPSBlastSearchLight’:
rpsutil.c:1838:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1838 |     Int2 status;
      |          ^~~~~~
rpsutil.c: In function ‘SaveUntilChar’:
rpsutil.c:2190:13: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 2190 |     if (ptr != NULLB)
      |             ^~
rpsutil.c:2190:9: note: did you mean to dereference the pointer?
 2190 |     if (ptr != NULLB)
      |         ^
rpsutil.c: In function ‘RPSBgetCddHits’:
rpsutil.c:2210:21: warning: variable ‘found_score’ set but not used [-Wunused-but-set-variable]
 2210 |   Boolean           found_score = FALSE;
      |                     ^~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from rpsutil.c:282:
rpsutil.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘getAuxInformation’:
rpsutil.c:398:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  398 |     fscanf(matrixAuxiliaryFile,"%s",underlyingMatrixName);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:404:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  404 |     fscanf(matrixAuxiliaryFile,"%d\n", gap_open);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:405:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  405 |     fscanf(matrixAuxiliaryFile,"%d\n", gap_extend);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  406 |     fscanf(matrixAuxiliaryFile, "%le", &Kungapped);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:407:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  407 |     fscanf(matrixAuxiliaryFile, "%le", &Hungapped);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:408:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  408 |     fscanf(matrixAuxiliaryFile, "%d", &maxLength);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:409:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  409 |     fscanf(matrixAuxiliaryFile, "%d", &dbLength);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:410:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  410 |     fscanf(matrixAuxiliaryFile, "%lf", &privateScalingFactor);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:415:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  415 |      fscanf(matrixAuxiliaryFile, "%d", &maxLength);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:416:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  416 |      fscanf(matrixAuxiliaryFile, "%le", &(rpsinfo->karlinK[index]));
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
rpsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: rpsutil.c,v 6.76 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
rpsutil.c: In function ‘RPSInitEx’:
rpsutil.c:451:28: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  451 |     sprintf(rps_matrix, "%s.rps", rpsinfo->rdfp->full_filename);
      |                            ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:452:28: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  452 |     sprintf(rps_lookup, "%s.loo", rpsinfo->rdfp->full_filename);
      |                            ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:453:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  453 |     sprintf(rps_aux, "%s.aux", rpsinfo->rdfp->full_filename);
      |                         ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘RPSAlignTraceBack’:
rpsutil.c:1444:32: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1444 |         search->sbp->posMatrix = posMatrix;
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
rpsutil.c:1433:24: warning: ‘rev_subject_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1433 |             seqalign = BlastGetGapAlgnTbck (search, 0, TRUE, FALSE,
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1434 |                                             subject, subject_length,
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~
 1435 |                                             rev_subject, rev_subject_length);
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘RPSCalcEValue’:
rpsutil.c:1269:30: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1269 |       search->sbp->posMatrix = posMatrix;
      |       ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
rpsutil.c: In function ‘RPSBgetCddHits’:
../include/ncbistr.h:284:20: warning: ‘dbname’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  284 | #define Nlm_StrCmp strcmp
      |                    ^~~~~~
rpsutil.c:2212:21: note: ‘dbname’ was declared here
 2212 |   CharPtr           dbname;
      |                     ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF kappa.c
kappa.c: In function ‘Kappa_SequenceGetProteinRange’:
kappa.c:1399:7: warning: unused variable ‘i’ [-Wunused-variable]
 1399 |   int i;
      |       ^
At top level:
kappa.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: kappa.c,v 6.94 2013/11/04 15:42:10 boratyng Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF xmlblast.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/xmlblast.h:89,
                 from xmlblast.c:171:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
xmlblast.c: In function ‘PSIXmlInit’:
xmlblast.c:1239:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
 1239 |     Boolean retval = FALSE;
      |             ^~~~~~
At top level:
xmlblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: xmlblast.c,v 6.41 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
xmlblast.c: In function ‘BXMLGetSeqLineForStdSeg’:
xmlblast.c:373:28: warning: ‘genetic_code2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  373 |     CharPtr genetic_code1, genetic_code2;
      |                            ^~~~~~~~~~~~~
xmlblast.c: In function ‘BXMLSeqAlignToHits’:
xmlblast.c:867:36: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  867 |                     if((hspp->next = BXMLGetHspFromSeqAlign(sap2, is_aa, chain,
      |                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  868 |                                         is_ooframe, mask_loc)) == NULL)
      |                                         ~~~~~~~~~~~~~~~~~~~~~~
xmlblast.c: In function ‘SeqAlignToHits’:
xmlblast.c:1646:24: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1646 |             hspp->next = GetHspFromSeqAlign(sap2, ungapped, &hsp_count);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bxmlobj.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from bxmlobj.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bxmlobj.c: In function ‘BlastOutputAsnRead’:
bxmlobj.c:96:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   96 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘ParametersAsnRead’:
bxmlobj.c:361:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  361 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:360:12: warning: unused variable ‘isError’ [-Wunused-variable]
  360 |    Boolean isError = FALSE;
      |            ^~~~~~~
bxmlobj.c: In function ‘IterationAsnRead’:
bxmlobj.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  613 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘StatisticsAsnRead’:
bxmlobj.c:829:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  829 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:828:12: warning: unused variable ‘isError’ [-Wunused-variable]
  828 |    Boolean isError = FALSE;
      |            ^~~~~~~
bxmlobj.c: In function ‘HitAsnRead’:
bxmlobj.c:1039:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1039 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘HspAsnRead’:
bxmlobj.c:1244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1244 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:1243:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1243 |    Boolean isError = FALSE;
      |            ^~~~~~~
At top level:
bxmlobj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bxmlobj.c,v 6.11 2006/09/18 15:20:39 bealer Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from ../include/dotseq.h:63,
                 from dotseq.c:86:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dotseq.c:96:36: warning: missing braces around initializer [-Wmissing-braces]
   96 | static Int4  DOTblosum62[24][24] = {
      |                                    ^
   97 |   4, -1, -2, -2,  0, -1, -1,  0, -2, -1, -1, -1, -1, -2, -1,  1,  0, -3, -2,  0, -2, -1,  0, -4,
      |   {                                                                                            }
   98 |  -1,  5,  0, -2, -3,  1,  0, -2,  0, -3, -2,  2, -1, -3, -2, -1, -1, -3, -2, -3, -1,  0, -1, -4,
      |  {                                                                                             }
   99 |  -2,  0,  6,  1, -3,  0,  0,  0,  1, -3, -3,  0, -2, -3, -2,  1,  0, -4, -2, -3,  3,  0, -1, -4,
      |  {                                                                                             }
  100 |  -2, -2,  1,  6, -3,  0,  2, -1, -1, -3, -4, -1, -3, -3, -1,  0, -1, -4, -3, -3,  4,  1, -1, -4,
      |  {                                                                                             }
  101 |   0, -3, -3, -3,  9, -3, -4, -3, -3, -1, -1, -3, -1, -2, -3, -1, -1, -2, -2, -1, -3, -3, -2, -4,
      |   {                                                                                            }
  102 |  -1,  1,  0,  0, -3,  5,  2, -2,  0, -3, -2,  1,  0, -3, -1,  0, -1, -2, -1, -2,  0,  3, -1, -4,
      |  {                                                                                             }
  103 |  -1,  0,  0,  2, -4,  2,  5, -2,  0, -3, -3,  1, -2, -3, -1,  0, -1, -3, -2, -2,  1,  4, -1, -4,
      |  {                                                                                             }
  104 |   0, -2,  0, -1, -3, -2, -2,  6, -2, -4, -4, -2, -3, -3, -2,  0, -2, -2, -3, -3, -1, -2, -1, -4,
      |   {                                                                                            }
  105 |  -2,  0,  1, -1, -3,  0,  0, -2,  8, -3, -3, -1, -2, -1, -2, -1, -2, -2,  2, -3,  0,  0, -1, -4,
      |  {                                                                                             }
  106 |  -1, -3, -3, -3, -1, -3, -3, -4, -3,  4,  2, -3,  1,  0, -3, -2, -1, -3, -1,  3, -3, -3, -1, -4,
      |  {                                                                                             }
  107 |  -1, -2, -3, -4, -1, -2, -3, -4, -3,  2,  4, -2,  2,  0, -3, -2, -1, -2, -1,  1, -4, -3, -1, -4,
      |  {                                                                                             }
  108 |  -1,  2,  0, -1, -3,  1,  1, -2, -1, -3, -2,  5, -1, -3, -1,  0, -1, -3, -2, -2,  0,  1, -1, -4,
      |  {                                                                                             }
  109 |  -1, -1, -2, -3, -1,  0, -2, -3, -2,  1,  2, -1,  5,  0, -2, -1, -1, -1, -1,  1, -3, -1, -1, -4,
      |  {                                                                                             }
  110 |  -2, -3, -3, -3, -2, -3, -3, -3, -1,  0,  0, -3,  0,  6, -4, -2, -2,  1,  3, -1, -3, -3, -1, -4,
      |  {                                                                                             }
  111 |  -1, -2, -2, -1, -3, -1, -1, -2, -2, -3, -3, -1, -2, -4,  7, -1, -1, -4, -3, -2, -2, -1, -2, -4,
      |  {                                                                                             }
  112 |   1, -1,  1,  0, -1,  0,  0,  0, -1, -2, -2,  0, -1, -2, -1,  4,  1, -3, -2, -2,  0,  0,  0, -4,
      |   {                                                                                            }
  113 |   0, -1,  0, -1, -1, -1, -1, -2, -2, -1, -1, -1, -1, -2, -1,  1,  5, -2, -2,  0, -1, -1,  0, -4,
      |   {                                                                                            }
  114 |  -3, -3, -4, -4, -2, -2, -3, -2, -2, -3, -2, -3, -1,  1, -4, -3, -2, 11,  2, -3, -4, -3, -2, -4,
      |  {                                                                                             }
  115 |  -2, -2, -2, -3, -2, -1, -2, -3,  2, -1, -1, -2, -1,  3, -3, -2, -2,  2,  7, -1, -3, -2, -1, -4,
      |  {                                                                                             }
  116 |   0, -3, -3, -3, -1, -2, -2, -3, -3,  3,  1, -2,  1, -1, -2, -2,  0, -3, -1,  4, -3, -2, -1, -4,
      |   {                                                                                            }
  117 |  -2, -1,  3,  4, -3,  0,  1, -1,  0, -3, -4,  0, -3, -3, -2,  0, -1, -4, -3, -3,  4,  1, -1, -4,
      |  {                                                                                             }
  118 |  -1,  0,  0,  1, -3,  3,  4, -2,  0, -3, -3,  1, -1, -3, -1,  0, -1, -3, -2, -2,  1,  4, -1, -4,
      |  {                                                                                             }
  119 |   0, -1, -1, -1, -2, -1, -1, -1, -1, -1, -1, -1, -1, -1, -2,  0,  0, -2, -1, -1, -1, -1, -1, -4,
      |   {                                                                                            }
  120 |  -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4,  1
      |  {
  121 |  };
      |  }
dotseq.c: In function ‘DOT_BuildPLookup’:
dotseq.c:887:31: warning: variable ‘found_ambig’ set but not used [-Wunused-but-set-variable]
  887 |   Boolean         EXACTMATCH, found_ambig, saved_index = FALSE;
      |                               ^~~~~~~~~~~
dotseq.c:885:19: warning: unused variable ‘threshold’ [-Wunused-variable]
  885 |   Int4            threshold=13; /* one-hit heuristics T must be at least 13*/
      |                   ^~~~~~~~~
dotseq.c:883:19: warning: unused variable ‘index’ [-Wunused-variable]
  883 |   Int4            index = 0;
      |                   ^~~~~
dotseq.c: In function ‘DOT_ComputeHits’:
dotseq.c:1043:47: warning: variable ‘q_end’ set but not used [-Wunused-but-set-variable]
 1043 |   Uint1Ptr                s, subject0, s_end, q_end;
      |                                               ^~~~~
dotseq.c:1041:19: warning: unused variable ‘saved_index’ [-Wunused-variable]
 1041 |   Boolean         saved_index = FALSE;
      |                   ^~~~~~~~~~~
dotseq.c:1039:19: warning: unused variable ‘threshold’ [-Wunused-variable]
 1039 |   Int4            threshold=13;
      |                   ^~~~~~~~~
dotseq.c: In function ‘DOT_SPI_FindBestAlnByDotPlot’:
dotseq.c:2016:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 2016 |    Uint1           strand;
      |                    ^~~~~~
dotseq.c:2015:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2015 |    Int4            start2;
      |                    ^~~~~~
dotseq.c:2014:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2014 |    Int4            start1;
      |                    ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from dotseq.c:87:
dotseq.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dotseq.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: dotseq.c,v 6.14 2006/07/13 17:16:20 bollin Exp $";
      |                   ^~~~~
dotseq.c: In function ‘DOT_BuildHitList’:
dotseq.c:1310:19: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1310 |   Int4            index;
      |                   ^~~~~
dotseq.c:1309:19: warning: ‘hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1309 |   DOTDiagPtr PNTR hitlist;
      |                   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF spidey.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/spidey.h:102,
                 from spidey.c:263:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
spidey.c: In function ‘SPI_PrintResult’:
spidey.c:1740:21: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1740 |    Int4             offset;
      |                     ^~~~~~
spidey.c: In function ‘SPI_AlnSinglemRNAToPieces’:
spidey.c:2854:19: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
 2854 |    if (spot->from == spot->to == 0)
      |        ~~~~~~~~~~~^~~~~~~~~~~
spidey.c: In function ‘SPI_FillInLastmRNAHoles’:
spidey.c:6299:21: warning: variable ‘internal’ set but not used [-Wunused-but-set-variable]
 6299 |    Boolean          internal;
      |                     ^~~~~~~~
spidey.c: In function ‘SPI_FindBestAlnByDotPlot’:
spidey.c:6445:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 6445 |    Uint1           strand;
      |                    ^~~~~~
spidey.c:6444:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 6444 |    Int4            start2;
      |                    ^~~~~~
spidey.c:6443:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 6443 |    Int4            start1;
      |                    ^~~~~~
spidey.c: In function ‘SPI_ConnectAlnPieces’:
spidey.c:7814:30: warning: variable ‘tmparray’ set but not used [-Wunused-but-set-variable]
 7814 |    SPI_FragPtr          PNTR tmparray;
      |                              ^~~~~~~~
spidey.c:7800:25: warning: variable ‘sfpprev’ set but not used [-Wunused-but-set-variable]
 7800 |    SPI_FragPtr          sfpprev;
      |                         ^~~~~~~
spidey.c: In function ‘SPI_AdjustSplicesInPieces’:
spidey.c:8448:23: warning: variable ‘minus’ set but not used [-Wunused-but-set-variable]
 8448 |    Boolean            minus;
      |                       ^~~~~
spidey.c: In function ‘SPI_CheckMrnaOrder’:
spidey.c:10296:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10296 |                 if ((ival->strand == Seq_strand_plus == ival2->strand
spidey.c:10300:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10300 |                     || (ival->strand == Seq_strand_minus == ival2->strand
spidey.c:10313:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10313 |                 if ((ival->strand == Seq_strand_plus == ival2->strand
spidey.c:10315:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10315 |                     || (ival->strand == Seq_strand_plus == ival2->strand
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/spidey.h:103,
                 from spidey.c:263:
spidey.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
spidey.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: spidey.c,v 6.74 2016/09/02 14:57:38 ucko Exp $";
      |                   ^~~~~
spidey.c: In function ‘SPI_GetProteinFrommRNA’:
spidey.c:9777:14: warning: ‘c3start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9777 |          tmp += c3start;
      |              ^~
spidey.c:9765:14: warning: ‘c1start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9765 |          tmp += c1start;
      |              ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF motif.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/motif.h:45,
                 from motif.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
motif.c: In function ‘MOT_FindPolyA’:
motif.c:86:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
   86 |    Uint1         buf[MOT_WINSIZE];
      |                  ^~~
motif.c: In function ‘MOT_FindKozak’:
motif.c:216:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
  216 |    Uint1         buf[MOT_WINSIZE];
      |                  ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/motif.h:48,
                 from motif.c:47:
motif.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
motif.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: motif.c,v 6.7 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blfmtutl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blfmtutl.c:175:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blfmtutl.c: In function ‘CBStatisticsGetReference’:
blfmtutl.c:593:4: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  593 |  } else
      |    ^~~~
blfmtutl.c:595:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  595 |    add_string_to_bufferEx("Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,", &ret_buffer, &ret_buffer_length, TRUE);
      |    ^~~~~~~~~~~~~~~~~~~~~~
blfmtutl.c: In function ‘BlastPrintTabularResults’:
blfmtutl.c:1281:16: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1281 |                for (index=1; ssp->next; index++)
      |                ^~~
blfmtutl.c:1283:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1283 |                    num_gap_opens = index / 2;
      |                    ^~~~~~~~~~~~~
At top level:
blfmtutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blfmtutl.c,v 1.44 2012/10/10 14:05:50 fongah2 Exp $";
      |                   ^~~~~
blfmtutl.c: In function ‘BlastPrintTabularResults’:
blfmtutl.c:1117:13: warning: ‘alignments_count’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1117 |          if (--alignments_count < 0)
      |             ^
blfmtutl.c:1353:19: warning: ‘s_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1353 |             s_end += s_shift;
      |             ~~~~~~^~~~~~~~~~
blfmtutl.c:1352:21: warning: ‘s_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1352 |             s_start += s_shift;
      |             ~~~~~~~~^~~~~~~~~~
blfmtutl.c:1351:19: warning: ‘q_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1351 |             q_end += q_shift;
      |             ~~~~~~^~~~~~~~~~
blfmtutl.c:1350:21: warning: ‘q_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1350 |             q_start += q_shift;
      |             ~~~~~~~~^~~~~~~~~~
blfmtutl.c:1081:24: warning: ‘query_id’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1081 |          while (slp && SeqIdComp(query_id, SeqLocId(slp)) != SIC_YES)
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blfmtutl.c: In function ‘BlastSetUserErrorString’:
blfmtutl.c:1413:26: warning: ‘title’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1413 |  CharPtr buf_start, ptr, title;
      |                          ^~~~~
rm -f libncbitool.a
ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbitool.a ../lib
ranlib ../lib/libncbitool.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF compo_heap.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smith_waterman.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF redo_alignment.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c
rm -f libblastcompadj.a
ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblastcompadj.a ../lib
ranlib ../lib/libblastcompadj.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontg.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontmb.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontmb.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontt.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pictogif.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from pictogif.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontl.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfonts.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfonts.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -DWIN_GIF -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbidrwg.c: In function ‘Nlm_ClearRgn’:
ncbidrwg.c:6081:16: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable]
 6081 |   Nlm_RgnTool  ntool;
      |                ^~~~~
ncbidrwg.c: In function ‘Nlm_DiffRgn’:
ncbidrwg.c:6273:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable]
 6273 |   Nlm_RgnTool  ntool3;
      |                ^~~~~~
ncbidrwg.c:6272:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6272 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6271:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6271 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_XorRgn’:
ncbidrwg.c:6324:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable]
 6324 |   Nlm_RgnTool  ntool3;
      |                ^~~~~~
ncbidrwg.c:6323:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6323 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6322:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6322 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_EqualRgn’:
ncbidrwg.c:6353:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6353 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6352:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6352 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_EmptyRgn’:
ncbidrwg.c:6381:17: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable]
 6381 |   Nlm_RgnTool   ntool;
      |                 ^~~~~
ncbidrwg.c: In function ‘Nlm_CopyPixmap’:
ncbidrwg.c:7040:25: warning: variable ‘height’ set but not used [-Wunused-but-set-variable]
 7040 |   Nlm_Int2              height;
      |                         ^~~~~~
ncbidrwg.c:7039:25: warning: variable ‘width’ set but not used [-Wunused-but-set-variable]
 7039 |   Nlm_Int2              width;
      |                         ^~~~~
ncbidrwg.c: In function ‘Nlm_GetColorRGB’:
ncbidrwg.c:1373:10: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1373 |   return (Nlm_Uint4)i;
      |          ^~~~~~~~~~~~
rm -f libvibgif.a
ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibgif.a ../lib
ranlib ../lib/libvibgif.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF algorend.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/viewer3d.h:125,
                 from algorend.c:584:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
algorend.c: In function ‘ColorFromSS’:
algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable]
  893 |     Int2 rsult = 0;
      |          ^~~~~
algorend.c: In function ‘Cn3D_RenWire’:
algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1400 |     PMLD pmldThis = NULL;
      |          ^~~~~~~~
algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1399 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1398 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘Cn3D_ColSeqCons’:
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1795 |     pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
      |                        ^
algorend.c: In function ‘RenderObject’:
algorend.c:3135:25: warning: variable ‘fZTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |                         ^~~~
algorend.c:3135:19: warning: variable ‘fYTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |                   ^~~~
algorend.c:3135:13: warning: variable ‘fXTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |             ^~~~
algorend.c:3134:29: warning: variable ‘fZFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |                             ^~~~~~
algorend.c:3134:21: warning: variable ‘fYFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |                     ^~~~~~
algorend.c:3134:13: warning: variable ‘fXFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |             ^~~~~~
algorend.c: In function ‘RenderLabel’:
algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 3393 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘RenderBond’:
algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3554 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderHalfWormBond’:
algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3673 |     PMSD pmsdParent;
      |          ^~~~~~~~~~
algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable]
 3671 |     PMAD pmad0, pmad1, pmad2, pmad3;
      |                        ^~~~~
algorend.c: In function ‘RenderAnAtom’:
algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable]
 3758 |     PMAD pmadFrom = NULL;
      |          ^~~~~~~~
algorend.c:3757:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3757 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderAllAtom’:
algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable]
 3829 |     int iMenu;
      |         ^~~~~
algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 3815 |     PVNMB pvnmbThis = NULL;
      |           ^~~~~~~~~
algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
 3811 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘RenderGraph’:
algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable]
 4498 |     Byte bReservedThis = 0;
      |          ^~~~~~~~~~~~~
algorend.c: In function ‘LabelChainTermini’:
algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable]
 4772 |         PMBD pmbdThis = NULL;
      |              ^~~~~~~~
algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 4771 |         PVNMB pvnmbThis = NULL;
      |               ^~~~~~~~~
algorend.c: In function ‘RenderMolecule’:
algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable]
 4871 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘fnARLoop’:
algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 5556 |     Int2 iTest;
      |          ^~~~~
algorend.c: In function ‘AlgorithmicRendering’:
algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable]
 5684 |     Int2 i = 0;
      |          ^
algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable]
 5683 |     Int2 Cn3d_LayerNow_sofar = 0;
      |          ^~~~~~~~~~~~~~~~~~~
algorend.c: In function ‘Do3DOrigin’:
algorend.c:5756:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 5756 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c:5751:13: warning: variable ‘fTo’ set but not used [-Wunused-but-set-variable]
 5751 |     FloatLo fTo[3];
      |             ^~~
algorend.c:5750:13: warning: variable ‘fFrom’ set but not used [-Wunused-but-set-variable]
 5750 |     FloatLo fFrom[3];
      |             ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function]
 2265 | static void LabelGroupOnOffProc(GrouP g)
      |             ^~~~~~~~~~~~~~~~~~~
algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable]
  717 | static Boolean Cn3d_CopyToNode = FALSE;
      |                ^~~~~~~~~~~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘RenderLabel’:
../include/pictur3d.h:235:27: warning: ‘iX’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:10: note: ‘iX’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |          ^~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:235:27: warning: ‘iY’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:14: note: ‘iY’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |              ^~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:235:27: warning: ‘iZ’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:18: note: ‘iZ’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |                  ^~
algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3448 |         fZCen += fZt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3447 |         fYCen += fYt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3446 |         fXCen += fXt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:77: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                                      ~~~~~~~^~~~~~~
algorend.c:3450:41: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3450 |         fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c: In function ‘MasterChangeRenderProc.constprop’:
algorend.c:1316:33: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1316 |             pars->SolventRender = k;
      |             ~~~~~~~~~~~~~~~~~~~~^~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘RenderObject’:
../include/pictur3d.h:234:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:10: note: ‘iXFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:18: note: ‘iYFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:26: note: ‘iZFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:10: note: ‘iXTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:16: note: ‘iYTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:22: note: ‘iZTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘Do3DOrigin’:
../include/pictur3d.h:232:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:10: note: ‘iXFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:18: note: ‘iYFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:26: note: ‘iZFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:10: note: ‘iXTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:16: note: ‘iYTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:22: note: ‘iZTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsel.c:60:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dopen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dopen.c:394:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dopen.c: In function ‘Cn3D_OpenStart’:
cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable]
  722 |     Int4 iBioseq = 0;
      |          ^~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1000 |             PDNML pdnmlThis = NULL;
      |                   ^~~~~~~~~
cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable]
  989 |     BiostrucAlignSeqPtr pbsasThis = NULL;
      |                         ^~~~~~~~~
cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’:
cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 1310 |     ButtoN b;
      |            ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dopen.c:413:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable]
  431 | static ButtoN Cn3D_bOpenBrowse;
      |               ^~~~~~~~~~~~~~~~
cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable]
  430 | static WindoW Cn3D_wOpen;
      |               ^~~~~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  529 |         SAM_ReplaceGI(salp);
      |         ^~~~~~~~~~~~~~~~~~~
cn3dopen.c:513:15: note: ‘salp’ was declared here
  513 |     SeqAlign *salp;
      |               ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dsave.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dsave.c:157:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportAsnNow’:
cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
  375 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable]
  372 |     BiostrucFeaturePtr pbsfThis;
      |                        ^~~~~~~~
cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  366 |     PMSD pmsdSlave = NULL, pmsdMaster = NULL;
      |          ^~~~~~~~~
cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable]
  362 |     Boolean iCn3d = TRUE, FirstSlave = FALSE;
      |                           ^~~~~~~~~~
cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  357 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveBiostruc’:
cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  524 |     ButtoN b;
      |            ^
cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  523 |     GrouP gMS;
      |           ^~~
cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  518 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportDictNow’:
cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  598 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable]
  596 |     Int4 iCount = 0;
      |          ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveDictionary’:
cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  629 |     ButtoN b;
      |            ^
cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  624 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_SaveSub’:
cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  688 |     IteM i;
      |          ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dsave.c:171:
cn3dsave.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable]
  184 | static ButtoN Cn3D_bFeatOn;
      |               ^~~~~~~~~~~~
In file included from cn3dsave.c:165:
../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  119 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable]
  118 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  117 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmime.h12";
      |               ^~~~~~~~~~~
cn3dsave.c: In function ‘Cn3D_GetSubSet’:
cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  289 |             isep->next = SeqEntryNew();
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dxprt.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportPDB’:
cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  209 |     ButtoN b;
      |            ^
cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  208 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  203 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportKin’:
cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  381 |     ButtoN b;
      |            ^
cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  380 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  375 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportSub’:
cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  513 |     IteM i;
      |          ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dwin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dwin.c:647:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces]
  733 | {
      | ^
  734 |   255, 255, 255, /* default     0 */
      |   {            }
  735 |   255,  20, 147, /* hotpink     1 */
      |   {            }
  736 |   255,   0, 255, /* magenta     2 */
      |   {            }
  737 |   155, 48, 255, /* purple      3 */
      |   {           }
  738 |     0,   0, 255, /* blue        4 */
      |     {          }
  739 |    30, 144, 255, /* sky         5 */
      |    {           }
  740 |     0, 255, 255, /* cyan        6 */
      |     {          }
  741 |     0, 255, 127, /* sea         7 */
      |     {          }
  742 |     0, 255,   0, /* green       8 */
      |     {          }
  743 |   255, 255,   0, /* yellow      9 */
      |   {            }
  744 |   255, 165,   0, /* gold       10 */
      |   {            }
  745 |   255,  69,   0, /* orange     11 */
      |   {            }
  746 |   255,   0,   0, /* red        12 */
      |   {            }
  747 |   255, 114,  86, /* pink       13 */
      |   {            }
  748 |   255, 174, 185, /* pinktint   14 */
      |   {            }
  749 |   255, 255, 255, /* white      15 */
      |   {            }
  750 |     0,   0,   0, /* black      16 */
      |     {          }
  751 |   176, 226, 255, /* bluetint   17 */
      |   {            }
  752 |   154, 255, 154, /* greentint  18 */
      |   {            }
  753 |   255, 236, 139, /* yellowtint 19 */
      |   {            }
  754 |   125, 125, 125, /* gray       20 */
      |   {            }
  755 |   139,  87,  66, /* brown      21 */
      |   {            }
  756 |   255,   0,   0, /* perm colors 22: red */
      |   {            }
  757 |     0, 255,   0, /* perm colors 23: green */
      |     {          }
  758 |   255,   0, 255, /* perm colors 24: magenta */
      |   {            }
  759 |    30, 144, 255, /* perm colors 25: sky */
      |    {           }
  760 |   155, 48, 255, /* perm colors 26: purple */
      |   {           }
  761 |     0, 255,   0, /* SS colors 27: helix, green */
      |     {          }
  762 |   255, 165,   0, /* SS colors 28: strand, gold */
      |   {            }
  763 |   255,  69,   0, /* SS colors 29: turn, orange */
      |   {            }
  764 |     0, 255, 255, /* SS colors 30: coil, cyan */
      |     {          }
  765 |   255, 255,   0, /* highlight colors 31: yellow */
      |   {            }
  766 |     0,   0,   0, /* background colors 32: black */
      |     {          }
  767 |   160,  82,  45, /* sienna 33 */
      |   {            }
  768 |   240, 230, 140, /* khaki 34 */
      |   {            }
  769 |   171, 130, 255, /* light purple 35 */
      |   {            }
  770 |   255, 200,   0, /* orange yellow 36 */
      |   {            }
  771 |   117, 128, 160, /* 37 */
      |   {            }
  772 |     5,  53, 239, /* 38 */
      |     {          }
  773 |    27,  62, 255, /* 39 */
      |    {           }
  774 |    84, 110, 203, /* 40 */
      |    {           }
  775 |   216,  77,  84, /* 41 */
      |   {            }
  776 |   125, 128, 135, /* 42 */
      |   {            }
  777 |   237,  29,  61, /* 43 */
      |   {            }
  778 |   184, 118, 120, /* 44 */
      |   {            }
  779 |   155,   9,   0, /* 45 */
      |   {            }
  780 |   155, 119, 107, /* 46 */
      |   {            }
  781 |    80, 110, 196, /* 47 */
      |    {           }
  782 |   122, 127, 157, /* 48 */
      |   {            }
  783 |    50,  85, 241, /* 49 */
      |    {           }
  784 |   201,  93,  91, /* 50 */
      |   {            }
  785 |   254,   0,   5, /* 51 */
      |   {            }
  786 |   155, 137, 133, /* 52 */
      |   {            }
  787 |     3,  53, 246  /* 53 */
      |     {
  788 | };
      | }
cn3dwin.c: In function ‘Viewer3DGroups’:
cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1728 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Viewer3DViewer’:
cn3dwin.c:1784:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1784 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Cn3D_AlignEdit’:
cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable]
 1936 |     Int2 iCount = 0;
      |          ^~~~~~
cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable]
 1935 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable]
 1933 |     SeqAlignPtr salp = NULL;
      |                 ^~~~
cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable]
 1931 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
 1930 |     PDNMS pdnmsSlave = NULL;
      |           ^~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function]
 1626 | static void HLmolecule_MA(MAPtr ma,
      |             ^~~~~~~~~~~~~
cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function]
 1428 | static void HLatom_MA(MAPtr ma,
      |             ^~~~~~~~~
cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function]
  929 | static void Cn3D_MoveCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function]
  922 | static void Cn3D_ZoomCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable]
  688 | static IteM Cn3D_iModelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable]
  682 | static IteM Cn3D_iLabelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dentr.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsg.c:254:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’:
cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable]
  593 |     OMUserDataPtr omudp = NULL;
      |                   ^~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmatn.c:173:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmatn.c: In function ‘FindMM’:
cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable]
  217 |     PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
      |                             ^~~~~~~~~~~~~~
cn3dmatn.c: In function ‘DoMediaHL’:
cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable]
  249 |     Byte MainAtom = 0;
      |          ^~~~~~~~
cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable]
  247 |     PALD paldThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable]
  246 |     PVNAL pvnalThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable]
  245 |     PMAD pmadThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
  244 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’:
cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  372 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’:
cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable]
  353 |     PDNMG pdnmgThis = NULL;
      |           ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckHighlighted’:
cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  364 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’:
cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable]
  508 |     PMGD pmgd = NULL;
      |          ^~~~
cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
  507 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  506 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘fnAlignList’:
cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |                         ^~~~~~~~
cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |           ^~~~~~~~
cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable]
  995 |     SeqIdPtr sipThis = NULL;
      |              ^~~~~~~
cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  993 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’:
cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
 1065 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 1064 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SetResidueVisibilities’:
cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable]
 1201 |     PVNMO pvnmoThis = NULL;
      |           ^~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ListDomainProc’:
cn3dmodl.c:413:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                                  ^~
cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                              ^~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmodl.c:410:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  410 |             sprintf(MolName, "%4s  %2s", domaindata[iCount]->pcPDBName,
      |                                  ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dshim.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dshim.c:131:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmesh.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  103 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmesh.c: In function ‘Cn3D_OpenMesh’:
cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  151 |     ButtoN b;
      |            ^
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |     fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge),
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |            &(Mesh.NumTri));
      |            ~~~~~~~~~~~~~~~
cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |         fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  120 |                &(Mesh.Vertices[i].Vertex[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  121 |                &(Mesh.Vertices[i].Vertex[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  122 |                &(Mesh.Vertices[i].Vertex[2]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  123 |                &(Mesh.Vertices[i].Normal[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  124 |                &(Mesh.Vertices[i].Normal[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |                &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  126 |                &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  129 |         fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  130 |                &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  133 |         fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  134 |                &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  135 |                &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  136 |                &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                &lDummy);
      |                ~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dstyl.c:72:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’:
cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
  459 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’:
cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable]
  641 |     PARS parsThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
  640 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’:
cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable]
  866 |     Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
      |                                            ^~~~~
cn3dstyl.c: In function ‘lFeatureEditedAction’:
cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable]
 1136 |     Int4 val = 0;
      |          ^~~
cn3dstyl.c: In function ‘bFeatureMoveAction’:
cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1153 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘bFeatureEditAction’:
cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1176 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ModelControls’:
cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable]
 1364 |     PrompT ppt12, ppt13, ppt14;
      |                   ^~~~~
cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                    ^~~~
cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |            ^~~~
cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’:
cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable]
 1728 |     Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
      |                              ^~~~~~~~~~~~~~
cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable]
 1725 |     Int2 iMol = 0, iMolCurrent = 0;
      |                    ^~~~~~~~~~~
cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’:
cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                                            ^~~~~~~~~~
cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                         ^~~~~~~~~~
cn3dstyl.c: In function ‘GetUserDefinedFeature’:
cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
 2196 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’:
cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable]
 2551 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 2549 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable]
 2548 |     PDNMM pdnmmHead = NULL;
      |           ^~~~~~~~~
cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 2547 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function]
  456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable]
  149 | static ButtoN bResetFeatureTitle;
      |               ^~~~~~~~~~~~~~~~~~
cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable]
  144 | static PopuP Cn3D_pupModelStyleItem;
      |              ^~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c: In function ‘CopyLocation’:
cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  496 |     rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqcons.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from seqcons.c:112:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from seqcons.c:115:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from seqcons.c:116:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=]
  263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] =
      |                   ^~~~~~~~~~~~~~~~~~
seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’:
seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                 ~~~~~~~~~~^~~~~~~~~~~
seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                                         ~~~~~~~~~~^~~~~~~~~~~
rm -f libncbicn3d.a
ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicn3d.a ../lib
ranlib ../lib/libncbicn3d.a
mv algorend.o algorend.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/shim3d.h:153,
                 from algorend.c:582:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
algorend.c: In function ‘Cn3D_SetOGLFont’:
algorend.c:791:24: warning: unused variable ‘currentUnderlined’ [-Wunused-variable]
  791 |                        currentUnderlined = FALSE;
      |                        ^~~~~~~~~~~~~~~~~
algorend.c:790:45: warning: unused variable ‘currentItalic’ [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                                             ^~~~~~~~~~~~~
algorend.c:790:24: warning: unused variable ‘currentBold’ [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                        ^~~~~~~~~~~
algorend.c:789:40: warning: unused variable ‘currentSize’ [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                                        ^~~~~~~~~~~
algorend.c:789:21: warning: unused variable ‘currentIndex’ [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                     ^~~~~~~~~~~~
algorend.c: In function ‘ColorFromSS’:
algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable]
  893 |     Int2 rsult = 0;
      |          ^~~~~
algorend.c: In function ‘Cn3D_RenWire’:
algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1400 |     PMLD pmldThis = NULL;
      |          ^~~~~~~~
algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1399 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1398 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘Cn3D_ColSeqCons’:
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1795 |     pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
      |                        ^
algorend.c: In function ‘MasterChangeLabelsProc’:
algorend.c:2075:44: warning: unused variable ‘TopOn’ [-Wunused-variable]
 2075 |     Boolean NumOn, NameOn, PDBOn, WhiteOn, TopOn;
      |                                            ^~~~~
algorend.c:2073:13: warning: unused variable ‘k’ [-Wunused-variable]
 2073 |     Int2 i, k, nameval;
      |             ^
algorend.c: In function ‘ResetLabelCtrls’:
algorend.c:2272:25: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
 2272 |     Int2 i, val, style, size, termStyle;
      |                         ^~~~
algorend.c: In function ‘LabelControls’:
algorend.c:2434:19: warning: variable ‘ppt11’ set but not used [-Wunused-but-set-variable]
 2434 |     PrompT ppt10, ppt11;
      |                   ^~~~~
algorend.c:2431:36: warning: unused variable ‘ppt7’ [-Wunused-variable]
 2431 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt7, ppt8, ppt9;
      |                                    ^~~~
algorend.c: In function ‘Cn3D_SetQualityFromAppParams’:
algorend.c:2649:9: warning: unused variable ‘i’ [-Wunused-variable]
 2649 |     int i;
      |         ^
algorend.c: In function ‘OGL_Quality’:
algorend.c:2769:23: warning: unused variable ‘q’ [-Wunused-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                       ^
algorend.c:2769:20: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                    ^
algorend.c:2769:16: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                ^~
algorend.c: In function ‘RenderControls’:
algorend.c:2893:12: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 2893 |     PrompT ppt5;
      |            ^~~~
algorend.c: In function ‘RenderObject’:
algorend.c:3138:10: warning: unused variable ‘iCylRadius’ [-Wunused-variable]
 3138 |     Int4 iCylRadius;
      |          ^~~~~~~~~~
algorend.c:3137:22: warning: unused variable ‘iZTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
algorend.c:3137:16: warning: unused variable ‘iYTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
algorend.c:3137:10: warning: unused variable ‘iXTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
algorend.c:3136:26: warning: unused variable ‘iZFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
algorend.c:3136:18: warning: unused variable ‘iYFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
algorend.c:3136:10: warning: unused variable ‘iXFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
algorend.c:3133:10: warning: unused variable ‘i’ [-Wunused-variable]
 3133 |     Int4 i = 0;
      |          ^
algorend.c: In function ‘RenderLabel’:
algorend.c:3394:10: warning: variable ‘paldPrim’ set but not used [-Wunused-but-set-variable]
 3394 |     PALD paldPrim = NULL;
      |          ^~~~~~~~
algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 3393 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c:3389:18: warning: unused variable ‘iZ’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |                  ^~
algorend.c:3389:14: warning: unused variable ‘iY’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |              ^~
algorend.c:3389:10: warning: unused variable ‘iX’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |          ^~
algorend.c: In function ‘RenderBond’:
algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3554 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderHalfWormBond’:
algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3673 |     PMSD pmsdParent;
      |          ^~~~~~~~~~
algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable]
 3671 |     PMAD pmad0, pmad1, pmad2, pmad3;
      |                        ^~~~~
algorend.c: In function ‘RenderAnAtom’:
algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable]
 3758 |     PMAD pmadFrom = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘RenderAllAtom’:
algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable]
 3829 |     int iMenu;
      |         ^~~~~
algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 3815 |     PVNMB pvnmbThis = NULL;
      |           ^~~~~~~~~
algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
 3811 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘RenderGraph’:
algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable]
 4498 |     Byte bReservedThis = 0;
      |          ^~~~~~~~~~~~~
algorend.c: In function ‘LabelChainTermini’:
algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable]
 4772 |         PMBD pmbdThis = NULL;
      |              ^~~~~~~~
algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 4771 |         PVNMB pvnmbThis = NULL;
      |               ^~~~~~~~~
algorend.c: In function ‘RenderMolecule’:
algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable]
 4871 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘fnARLoop’:
algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 5556 |     Int2 iTest;
      |          ^~~~~
algorend.c: In function ‘AlgorithmicRendering’:
algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable]
 5684 |     Int2 i = 0;
      |          ^
algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable]
 5683 |     Int2 Cn3d_LayerNow_sofar = 0;
      |          ^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
algorend.c:789:21: warning: ‘currentIndex’ defined but not used [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                     ^~~~~~~~~~~~
algorend.c:789:40: warning: ‘currentSize’ defined but not used [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                                        ^~~~~~~~~~~
algorend.c:790:24: warning: ‘currentBold’ defined but not used [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                        ^~~~~~~~~~~
algorend.c:790:45: warning: ‘currentItalic’ defined but not used [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                                             ^~~~~~~~~~~~~
algorend.c:791:24: warning: ‘currentUnderlined’ defined but not used [-Wunused-variable]
  791 |                        currentUnderlined = FALSE;
      |                        ^~~~~~~~~~~~~~~~~
algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function]
 2265 | static void LabelGroupOnOffProc(GrouP g)
      |             ^~~~~~~~~~~~~~~~~~~
algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable]
  717 | static Boolean Cn3d_CopyToNode = FALSE;
      |                ^~~~~~~~~~~~~~~
algorend.c: In function ‘MasterChangeRenderProc’:
algorend.c:1295:29: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1295 |             pars->PBBRender = k;
      |             ~~~~~~~~~~~~~~~~^~~
algorend.c: In function ‘RenderLabel’:
algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3448 |         fZCen += fZt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3447 |         fYCen += fYt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3446 |         fXCen += fXt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3438:30: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3438 |         fYCen = fYTo + (fYTo - fYFrom) / 2.0;
      |                        ~~~~~~^~~~~~~~~
algorend.c:3437:30: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3437 |         fXCen = fXTo + (fXTo - fXFrom) / 2.0;
      |                        ~~~~~~^~~~~~~~~
algorend.c:3449:58: warning: ‘fZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                   ~~~~~~~^~~~~~~~~
algorend.c:3438:30: warning: ‘fYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3438 |         fYCen = fYTo + (fYTo - fYFrom) / 2.0;
      |                        ~~~~~~^~~~~~~~~
algorend.c:3437:30: warning: ‘fXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3437 |         fXCen = fXTo + (fXTo - fXFrom) / 2.0;
      |                        ~~~~~~^~~~~~~~~
mv algorend.o algorend.glo
mv algorend.tmp algorend.o
mv cn3dmsel.o cn3dmsel.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsel.c:60:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv cn3dmsel.o cn3dmsel.glo
mv cn3dmsel.tmp cn3dmsel.o
mv cn3dopen.o cn3dopen.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dopen.c:394:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dopen.c: In function ‘Cn3D_OpenStart’:
cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable]
  722 |     Int4 iBioseq = 0;
      |          ^~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1000 |             PDNML pdnmlThis = NULL;
      |                   ^~~~~~~~~
cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable]
  989 |     BiostrucAlignSeqPtr pbsasThis = NULL;
      |                         ^~~~~~~~~
cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’:
cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 1310 |     ButtoN b;
      |            ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dopen.c:413:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable]
  431 | static ButtoN Cn3D_bOpenBrowse;
      |               ^~~~~~~~~~~~~~~~
cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable]
  430 | static WindoW Cn3D_wOpen;
      |               ^~~~~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  529 |         SAM_ReplaceGI(salp);
      |         ^~~~~~~~~~~~~~~~~~~
cn3dopen.c:513:15: note: ‘salp’ was declared here
  513 |     SeqAlign *salp;
      |               ^~~~
mv cn3dopen.o cn3dopen.glo
mv cn3dopen.tmp cn3dopen.o
mv cn3dsave.o cn3dsave.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dsave.c:157:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dsave.c: In function ‘Cn3D_AddMatrix’:
cn3dsave.c:206:41: warning: unused variable ‘bsfsp_new’ [-Wunused-variable]
  206 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_new = NULL;
      |                                         ^~~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportAsnNow’:
cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
  375 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable]
  372 |     BiostrucFeaturePtr pbsfThis;
      |                        ^~~~~~~~
cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  366 |     PMSD pmsdSlave = NULL, pmsdMaster = NULL;
      |          ^~~~~~~~~
cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable]
  362 |     Boolean iCn3d = TRUE, FirstSlave = FALSE;
      |                           ^~~~~~~~~~
cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  357 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveBiostruc’:
cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  524 |     ButtoN b;
      |            ^
cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  523 |     GrouP gMS;
      |           ^~~
cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  518 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportDictNow’:
cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  598 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable]
  596 |     Int4 iCount = 0;
      |          ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveDictionary’:
cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  629 |     ButtoN b;
      |            ^
cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  624 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_SaveSub’:
cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  688 |     IteM i;
      |          ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dsave.c:171:
cn3dsave.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable]
  184 | static ButtoN Cn3D_bFeatOn;
      |               ^~~~~~~~~~~~
In file included from cn3dsave.c:165:
../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  119 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable]
  118 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  117 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmime.h12";
      |               ^~~~~~~~~~~
cn3dsave.c: In function ‘Cn3D_GetSubSet’:
cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  289 |             isep->next = SeqEntryNew();
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~
mv cn3dsave.o cn3dsave.glo
mv cn3dsave.tmp cn3dsave.o
mv cn3dxprt.o cn3dxprt.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dxprt.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportPDB’:
cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  209 |     ButtoN b;
      |            ^
cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  208 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  203 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportKin’:
cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  381 |     ButtoN b;
      |            ^
cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  380 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  375 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportSub’:
cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  513 |     IteM i;
      |          ^
mv cn3dxprt.o cn3dxprt.glo
mv cn3dxprt.tmp cn3dxprt.o
mv cn3dwin.o cn3dwin.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dwin.c:647:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces]
  733 | {
      | ^
  734 |   255, 255, 255, /* default     0 */
      |   {            }
  735 |   255,  20, 147, /* hotpink     1 */
      |   {            }
  736 |   255,   0, 255, /* magenta     2 */
      |   {            }
  737 |   155, 48, 255, /* purple      3 */
      |   {           }
  738 |     0,   0, 255, /* blue        4 */
      |     {          }
  739 |    30, 144, 255, /* sky         5 */
      |    {           }
  740 |     0, 255, 255, /* cyan        6 */
      |     {          }
  741 |     0, 255, 127, /* sea         7 */
      |     {          }
  742 |     0, 255,   0, /* green       8 */
      |     {          }
  743 |   255, 255,   0, /* yellow      9 */
      |   {            }
  744 |   255, 165,   0, /* gold       10 */
      |   {            }
  745 |   255,  69,   0, /* orange     11 */
      |   {            }
  746 |   255,   0,   0, /* red        12 */
      |   {            }
  747 |   255, 114,  86, /* pink       13 */
      |   {            }
  748 |   255, 174, 185, /* pinktint   14 */
      |   {            }
  749 |   255, 255, 255, /* white      15 */
      |   {            }
  750 |     0,   0,   0, /* black      16 */
      |     {          }
  751 |   176, 226, 255, /* bluetint   17 */
      |   {            }
  752 |   154, 255, 154, /* greentint  18 */
      |   {            }
  753 |   255, 236, 139, /* yellowtint 19 */
      |   {            }
  754 |   125, 125, 125, /* gray       20 */
      |   {            }
  755 |   139,  87,  66, /* brown      21 */
      |   {            }
  756 |   255,   0,   0, /* perm colors 22: red */
      |   {            }
  757 |     0, 255,   0, /* perm colors 23: green */
      |     {          }
  758 |   255,   0, 255, /* perm colors 24: magenta */
      |   {            }
  759 |    30, 144, 255, /* perm colors 25: sky */
      |    {           }
  760 |   155, 48, 255, /* perm colors 26: purple */
      |   {           }
  761 |     0, 255,   0, /* SS colors 27: helix, green */
      |     {          }
  762 |   255, 165,   0, /* SS colors 28: strand, gold */
      |   {            }
  763 |   255,  69,   0, /* SS colors 29: turn, orange */
      |   {            }
  764 |     0, 255, 255, /* SS colors 30: coil, cyan */
      |     {          }
  765 |   255, 255,   0, /* highlight colors 31: yellow */
      |   {            }
  766 |     0,   0,   0, /* background colors 32: black */
      |     {          }
  767 |   160,  82,  45, /* sienna 33 */
      |   {            }
  768 |   240, 230, 140, /* khaki 34 */
      |   {            }
  769 |   171, 130, 255, /* light purple 35 */
      |   {            }
  770 |   255, 200,   0, /* orange yellow 36 */
      |   {            }
  771 |   117, 128, 160, /* 37 */
      |   {            }
  772 |     5,  53, 239, /* 38 */
      |     {          }
  773 |    27,  62, 255, /* 39 */
      |    {           }
  774 |    84, 110, 203, /* 40 */
      |    {           }
  775 |   216,  77,  84, /* 41 */
      |   {            }
  776 |   125, 128, 135, /* 42 */
      |   {            }
  777 |   237,  29,  61, /* 43 */
      |   {            }
  778 |   184, 118, 120, /* 44 */
      |   {            }
  779 |   155,   9,   0, /* 45 */
      |   {            }
  780 |   155, 119, 107, /* 46 */
      |   {            }
  781 |    80, 110, 196, /* 47 */
      |    {           }
  782 |   122, 127, 157, /* 48 */
      |   {            }
  783 |    50,  85, 241, /* 49 */
      |    {           }
  784 |   201,  93,  91, /* 50 */
      |   {            }
  785 |   254,   0,   5, /* 51 */
      |   {            }
  786 |   155, 137, 133, /* 52 */
      |   {            }
  787 |     3,  53, 246  /* 53 */
      |     {
  788 | };
      | }
cn3dwin.c: In function ‘Cn3D_Default_HLColor’:
cn3dwin.c:982:27: warning: variable ‘colorB’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |                           ^~~~~~
cn3dwin.c:982:19: warning: variable ‘colorG’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |                   ^~~~~~
cn3dwin.c:982:11: warning: variable ‘colorR’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |           ^~~~~~
cn3dwin.c: In function ‘Cn3D_RedrawEx’:
cn3dwin.c:1251:19: warning: unused variable ‘iColor’ [-Wunused-variable]
 1251 |     DDV_ColorCell iColor;
      |                   ^~~~~~
cn3dwin.c: In function ‘fnPreCHLresidue’:
cn3dwin.c:1543:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1543 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c: In function ‘Viewer3DGroups’:
cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1728 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Cn3D_AlignEdit’:
cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable]
 1936 |     Int2 iCount = 0;
      |          ^~~~~~
cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable]
 1935 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable]
 1933 |     SeqAlignPtr salp = NULL;
      |                 ^~~~
cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable]
 1931 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
 1930 |     PDNMS pdnmsSlave = NULL;
      |           ^~~~~~~~~~
cn3dwin.c: In function ‘Cn3DWin’:
cn3dwin.c:2364:5: warning: implicit declaration of function ‘Nlm_SetOGLContext’; did you mean ‘Nlm_InitAppContext’? [-Wimplicit-function-declaration]
 2364 |     Nlm_SetOGLContext(NULL, NULL, NULL, NULL);
      |     ^~~~~~~~~~~~~~~~~
      |     Nlm_InitAppContext
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function]
 1626 | static void HLmolecule_MA(MAPtr ma,
      |             ^~~~~~~~~~~~~
cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function]
 1428 | static void HLatom_MA(MAPtr ma,
      |             ^~~~~~~~~
cn3dwin.c:1349:25: warning: ‘DoHighlightSeg’ defined but not used [-Wunused-function]
 1349 | static void LIBCALLBACK DoHighlightSeg(PFB pfbThis,
      |                         ^~~~~~~~~~~~~~
cn3dwin.c:979:13: warning: ‘Cn3D_Default_HLColor’ defined but not used [-Wunused-function]
  979 | static void Cn3D_Default_HLColor(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~
cn3dwin.c:953:13: warning: ‘Cn3D_BgColor’ defined but not used [-Wunused-function]
  953 | static void Cn3D_BgColor(IteM i)
      |             ^~~~~~~~~~~~
cn3dwin.c:936:13: warning: ‘Cn3D_Default_BgColor’ defined but not used [-Wunused-function]
  936 | static void Cn3D_Default_BgColor(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~
cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function]
  929 | static void Cn3D_MoveCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function]
  922 | static void Cn3D_ZoomCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:719:14: warning: ‘Cn3D_gViewCtrl’ defined but not used [-Wunused-variable]
  719 | static GrouP Cn3D_gViewCtrl;
      |              ^~~~~~~~~~~~~~
cn3dwin.c:713:14: warning: ‘Cn3D_gViewer’ defined but not used [-Wunused-variable]
  713 | static GrouP Cn3D_gViewer;
      |              ^~~~~~~~~~~~
cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable]
  688 | static IteM Cn3D_iModelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable]
  682 | static IteM Cn3D_iLabelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:676:14: warning: ‘Cn3D_Vy’ defined but not used [-Wunused-variable]
  676 | static Uint2 Cn3D_Vy, Cn3D_Rx;
      |              ^~~~~~~
mv cn3dwin.o cn3dwin.glo
mv cn3dwin.tmp cn3dwin.o
mv cn3dentr.o cn3dentr.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dentr.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv cn3dentr.o cn3dentr.glo
mv cn3dentr.tmp cn3dentr.o
mv cn3dmsg.o cn3dmsg.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsg.c:254:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’:
cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable]
  593 |     OMUserDataPtr omudp = NULL;
      |                   ^~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv cn3dmsg.o cn3dmsg.glo
mv cn3dmsg.tmp cn3dmsg.o
mv cn3dmatn.o cn3dmatn.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmatn.c:173:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmatn.c: In function ‘FindMM’:
cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable]
  217 |     PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
      |                             ^~~~~~~~~~~~~~
cn3dmatn.c: In function ‘DoMediaHL’:
cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable]
  249 |     Byte MainAtom = 0;
      |          ^~~~~~~~
cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable]
  247 |     PALD paldThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable]
  246 |     PVNAL pvnalThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable]
  245 |     PMAD pmadThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
  244 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’:
cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  372 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
mv cn3dmatn.o cn3dmatn.glo
mv cn3dmatn.tmp cn3dmatn.o
mv cn3dmodl.o cn3dmodl.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’:
cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable]
  353 |     PDNMG pdnmgThis = NULL;
      |           ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckHighlighted’:
cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  364 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’:
cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable]
  508 |     PMGD pmgd = NULL;
      |          ^~~~
cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
  507 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  506 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘fnAlignList’:
cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |                         ^~~~~~~~
cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |           ^~~~~~~~
cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable]
  995 |     SeqIdPtr sipThis = NULL;
      |              ^~~~~~~
cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  993 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’:
cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
 1065 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 1064 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SetResidueVisibilities’:
cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable]
 1201 |     PVNMO pvnmoThis = NULL;
      |           ^~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ListDomainProc’:
cn3dmodl.c:413:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                                  ^~
cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                              ^~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmodl.c:410:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  410 |             sprintf(MolName, "%4s  %2s", domaindata[iCount]->pcPDBName,
      |                                  ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv cn3dmodl.o cn3dmodl.glo
mv cn3dmodl.tmp cn3dmodl.o
mv cn3dshim.o cn3dshim.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dshim.c:131:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dshim.c: In function ‘Cn3D_Size’:
cn3dshim.c:413:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  413 |     PMSD pmsdThis;
      |          ^~~~~~~~
cn3dshim.c:412:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
  412 |     PDNMS pdnmsSlave;
      |           ^~~~~~~~~~
cn3dshim.c: In function ‘Cn3D_SizeCB’:
cn3dshim.c:399:36: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations]
  399 |                         BoundBox->x[i + 1]) BoundBox->x[i + 1] =
      |                         ~~~~~~~~~~~^~~~~~~
cn3dshim.c:395:17: note: within this loop
  395 |                 for (i = 0; i < 6; i += 2) { /* check to see if the atom lies outside the bound box */
      |                 ^~~
cn3dshim.c:391:36: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations]
  391 |                     BoundBox->x[i] = pflvDataThis[i / (int) 2];
      |                     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dshim.c:390:17: note: within this loop
  390 |                 for (i = 0; i < 6; i++) {
      |                 ^~~
mv cn3dshim.o cn3dshim.glo
mv cn3dshim.tmp cn3dshim.o
mv cn3dmesh.o cn3dmesh.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmesh.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  103 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmesh.c: In function ‘Cn3D_OpenMesh’:
cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  151 |     ButtoN b;
      |            ^
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |     fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge),
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |            &(Mesh.NumTri));
      |            ~~~~~~~~~~~~~~~
cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |         fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  120 |                &(Mesh.Vertices[i].Vertex[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  121 |                &(Mesh.Vertices[i].Vertex[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  122 |                &(Mesh.Vertices[i].Vertex[2]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  123 |                &(Mesh.Vertices[i].Normal[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  124 |                &(Mesh.Vertices[i].Normal[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |                &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  126 |                &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  129 |         fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  130 |                &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  133 |         fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  134 |                &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  135 |                &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  136 |                &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                &lDummy);
      |                ~~~~~~~~
mv cn3dmesh.o cn3dmesh.glo
mv cn3dmesh.tmp cn3dmesh.o
mv cn3dstyl.o cn3dstyl.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dstyl.c:72:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’:
cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
  459 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’:
cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable]
  641 |     PARS parsThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
  640 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’:
cn3dstyl.c:867:16: warning: unused variable ‘TopOn’ [-Wunused-variable]
  867 |         FALSE, TopOn = FALSE;
      |                ^~~~~
cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable]
  866 |     Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
      |                                            ^~~~~
cn3dstyl.c:864:17: warning: unused variable ‘k’ [-Wunused-variable]
  864 |     Int2 i = 0, k = 0, nameval = 0;
      |                 ^
cn3dstyl.c: In function ‘ModelSetLabelCtrls’:
cn3dstyl.c:1059:37: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
 1059 |     Int2 i = 0, val = 0, style = 0, size = 0;
      |                                     ^~~~
cn3dstyl.c: In function ‘lFeatureEditedAction’:
cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable]
 1136 |     Int4 val = 0;
      |          ^~~
cn3dstyl.c: In function ‘bFeatureMoveAction’:
cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1153 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘bFeatureEditAction’:
cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1176 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ModelControls’:
cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable]
 1364 |     PrompT ppt12, ppt13, ppt14;
      |                   ^~~~~
cn3dstyl.c:1363:9: warning: unused variable ‘ppt11’ [-Wunused-variable]
 1363 |         ppt11;
      |         ^~~~~
cn3dstyl.c:1362:60: warning: unused variable ‘ppt9’ [-Wunused-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                                            ^~~~
cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                    ^~~~
cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |            ^~~~
cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’:
cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable]
 1728 |     Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
      |                              ^~~~~~~~~~~~~~
cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable]
 1725 |     Int2 iMol = 0, iMolCurrent = 0;
      |                    ^~~~~~~~~~~
cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’:
cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                                            ^~~~~~~~~~
cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                         ^~~~~~~~~~
cn3dstyl.c: In function ‘GetUserDefinedFeature’:
cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
 2196 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’:
cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable]
 2551 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 2549 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable]
 2548 |     PDNMM pdnmmHead = NULL;
      |           ^~~~~~~~~
cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 2547 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function]
  456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable]
  149 | static ButtoN bResetFeatureTitle;
      |               ^~~~~~~~~~~~~~~~~~
cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable]
  144 | static PopuP Cn3D_pupModelStyleItem;
      |              ^~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c: In function ‘CopyLocation’:
cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  496 |     rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
mv cn3dstyl.o cn3dstyl.glo
mv cn3dstyl.tmp cn3dstyl.o
mv seqcons.o seqcons.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from seqcons.c:112:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from seqcons.c:115:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from seqcons.c:116:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=]
  263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] =
      |                   ^~~~~~~~~~~~~~~~~~
seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’:
seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                 ~~~~~~~~~~^~~~~~~~~~~
seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                                         ~~~~~~~~~~^~~~~~~~~~~
mv seqcons.o seqcons.glo
mv seqcons.tmp seqcons.o
rm -f libncbicn3dOGL.a
ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicn3dOGL.a ../lib
ranlib ../lib/libncbicn3dOGL.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_engine.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_extend.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_filter.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hits.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_itree.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_lookup.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seg.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_sw.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_setup.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_stat.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_traceback.c
blast_traceback.c: In function ‘BLAST_ComputeTraceback_MT’:
blast_traceback.c:1500: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 1500 | #pragma omp parallel for default(none) num_threads(actual_num_threads) schedule(guided) if (actual_num_threads > 1) \
      | 
blast_traceback.c:1524: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1524 | #pragma omp critical(retval)
      | 
blast_traceback.c:1530: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 1530 | #pragma omp flush(has_been_interrupted)
      | 
blast_traceback.c:1561: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1561 | #pragma omp critical(tback_gen_code)
      | 
blast_traceback.c:1591: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1591 | #pragma omp critical(retval)
      | 
blast_traceback.c:1631: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1631 | #pragma omp critical(tback_gen_code)
      | 
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_util.c
blast_util.c: In function ‘BlastProgram2Number’:
blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  306 |     else if (strcasecmp("mapper", program) == 0)
      |          ^~
blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  309 |  return 0;
      |  ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gapinfo.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF greedy_align.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF link_hsps.c
link_hsps.c: In function ‘s_FwdCompareHSPs’:
link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  133 |     else if (h1->context > h2->context)
      |          ^~
link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  136 |  if (h1->query.offset < h2->query.offset)
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF na_ungapped.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_math.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_std.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pattern.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_extend.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_lookup.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_util.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_encoding.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_kappa.c
blast_kappa.c: In function ‘Blast_RedoAlignmentCore_MT’:
blast_kappa.c:3407: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 3407 | #pragma omp parallel \
      | 
blast_kappa.c:3426: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
 3426 | #pragma omp for schedule(static)
      | 
blast_kappa.c:3428: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3428 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3489: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 3489 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3491: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3491 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3504: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 3504 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3506: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3506 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3722: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 3722 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3724: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3724 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3730: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas]
 3730 | #pragma omp barrier
      | 
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_parameters.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_posit.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_program.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_query_info.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tune.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c
blast_nalookup.c: In function ‘s_NaHashLookupScanSubjectForWordCounts’:
blast_nalookup.c:1850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 1850 | #pragma omp parallel for if (num_threads > 1) num_threads(num_threads) \
      | 
blast_nalookup.c:1858: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1858 | #pragma omp critical (get_sequence_for_word_counts)
      | 
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aascan.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nascan.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF split_query.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF index_ungapped.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hspstream_mt_utils.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_traceback_mt_priv.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF boost_erf.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jumper.c
rm -f libblast.a
ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o blast_hspstream_mt_utils.o blast_traceback_mt_priv.o boost_erf.o jumper.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblast.a ../lib
ranlib ../lib/libblast.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_api.c: In function ‘s_BlastRPSInfoInit’:
blast_api.c:149:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  149 |    fscanf(auxfile, "%s", buffer);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:151:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  151 |    fscanf(auxfile, "%d", &info->aux_info.gap_open_penalty);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:152:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  152 |    fscanf(auxfile, "%d", &info->aux_info.gap_extend_penalty);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:153:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |    fscanf(auxfile, "%le", &info->aux_info.ungapped_k);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:154:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  154 |    fscanf(auxfile, "%le", &info->aux_info.ungapped_h);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:155:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  155 |    fscanf(auxfile, "%d", &info->aux_info.max_db_seq_length);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:156:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  156 |    fscanf(auxfile, "%d", &info->aux_info.db_length);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:157:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  157 |    fscanf(auxfile, "%lf", &info->aux_info.scale_factor);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:161:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  161 |       fscanf(auxfile, "%d", &seq_size); /* not used */
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:162:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  162 |       fscanf(auxfile, "%le", &info->aux_info.karlin_k[i]);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c: In function ‘s_BlastFindMatrixPath’:
blast_api.c:502:39: warning: ‘%s’ directive writing up to 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  502 |                  sprintf(buf_full, "%s%s%s%s", buf_path,
      |                                       ^~
  503 |                           alphabet_type, DIRDELIMSTR, matrix_name);
      |                           ~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4099) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:484:35: warning: ‘data’ directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
  484 |          sprintf(buf_path_2, "%s%sdata%s", buf_path, DIRDELIMSTR, DIRDELIMSTR);
      |                                   ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:470:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  470 |          sprintf(buf_path_2, "%s%s", buf_path, DIRDELIMSTR);
      |                                   ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4097 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c: In function ‘s_BlastRPSInfoInit’:
blast_api.c:104:25: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  104 |    sprintf(filename, "%s.loo", (char *)pathname);
      |                         ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:123:25: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  123 |    sprintf(filename, "%s.rps", (char *)pathname);
      |                         ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:144:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  144 |    sprintf(filename, "%s.aux", (char *)pathname);
      |                         ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_input.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from blast_input.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_input.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast_input.c,v 1.32 2008/06/09 17:28:41 madden Exp $";
      |                   ^~~~~
blast_input.c: In function ‘BLAST_GetQuerySeqLoc’:
blast_input.c:98:21: warning: ‘%ld’ directive writing between 1 and 7 bytes into a region of size 4 [-Wformat-overflow=]
   98 |    sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES));
      |                     ^~~
blast_input.c:98:20: note: directive argument in the range [-131080, 131080]
   98 |    sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES));
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from blast_input.c:34:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 8 bytes into a destination of size 4
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_format.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_format.h:45,
                 from blast_format.c:38:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_format.c: In function ‘s_MBXmlInit’:
blast_format.c:255:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
  255 |     Boolean retval = FALSE;
      |             ^~~~~~
blast_format.c: In function ‘s_LoadMatrix’:
blast_format.c:673:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  673 |                  ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
      |                     ~~~~~~^~~
blast_format.c:673:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  673 |                  ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
      |                                ~~~~~~^~~
At top level:
blast_format.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   35 | static char const rcsid[] = "$Id: blast_format.c,v 1.120 2012/10/10 14:07:01 fongah2 Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/ncbithr.h:87,
                 from blast_mtlock.c:39:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_mtlock.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   35 | static char const rcsid[] =
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options_api.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_prelim.c
blast_prelim.c: In function ‘Blast_PrelimSearchThreadRun’:
blast_prelim.c:100:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  100 |    Int2 status = 0;
      |         ^~~~~~
At top level:
blast_prelim.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   34 | static char const rcsid[] = "$Id: blast_prelim.c,v 1.8 2006/05/24 21:17:50 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_returns.c
blast_returns.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_returns.c,v 1.39 2010/06/10 13:44:46 madden Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from blast_seq.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_seq.c: In function ‘s_SeqLocFillSequenceBuffer’:
blast_seq.c:529:10: warning: variable ‘seq_code’ set but not used [-Wunused-but-set-variable]
  529 |    Uint1 seq_code, strand;
      |          ^~~~~~~~
At top level:
blast_seq.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast_seq.c,v 1.89 2008/06/09 17:29:14 madden Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from ../include/algo/blast/api/blast_seqalign.h:42,
                 from blast_seqalign.c:35:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_seqalign.c: In function ‘s_HSPListToSeqAlignUngapped’:
blast_seqalign.c:343:26: warning: variable ‘hspset_cnt_old’ set but not used [-Wunused-but-set-variable]
  343 |    Int4 hsp_cnt, index2, hspset_cnt_old;
      |                          ^~~~~~~~~~~~~~
At top level:
blast_seqalign.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_seqalign.c,v 1.64 2010/02/12 20:54:54 maning Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tabular.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from blast_tabular.c:35:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_tabular.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_tabular.c,v 1.41 2009/06/01 14:33:38 maning Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF repeats_filter.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from ../include/algo/blast/api/repeats_filter.h:41,
                 from repeats_filter.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
repeats_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: repeats_filter.c,v 1.19 2007/12/19 21:56:48 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c
seqsrc_multiseq.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   33 | static char const rcsid[] = "$Id: seqsrc_multiseq.c,v 1.28 2011/05/26 20:59:45 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from ../include/algo/blast/api/seqsrc_readdb.h:38,
                 from seqsrc_readdb.c:35:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqsrc_readdb.c: In function ‘s_ReaddbGetNextChunk’:
seqsrc_readdb.c:375:11: warning: variable ‘real_readdb_entries’ set but not used [-Wunused-but-set-variable]
  375 |     Uint4 real_readdb_entries;
      |           ^~~~~~~~~~~~~~~~~~~
At top level:
seqsrc_readdb.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: seqsrc_readdb.c,v 1.60 2011/05/26 20:59:45 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF twoseq_api.c
twoseq_api.c: In function ‘s_TwoSeqBasicFillOptions’:
twoseq_api.c:100:10: warning: unused variable ‘status’ [-Wunused-variable]
  100 |     Int2 status = 0;
      |          ^~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/algo/blast/api/twoseq_api.h:41,
                 from twoseq_api.c:45:
twoseq_api.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dust_filter.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from ../include/algo/blast/api/dust_filter.h:41,
                 from dust_filter.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dust_filter.c: In function ‘s_GetFilteringLocations’:
dust_filter.c:171:32: warning: unused variable ‘filter_slp_rev’ [-Wunused-variable]
  171 |                   BlastSeqLoc* filter_slp_rev = NULL;
      |                                ^~~~~~~~~~~~~~
At top level:
dust_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: dust_filter.c,v 1.12 2007/12/19 22:05:56 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message_api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from blast_message_api.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/ncbithr.h:87,
                 from hspfilter_queue.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
hspfilter_queue.c: In function ‘s_BlastHSPQueueInit’:
hspfilter_queue.c:65:24: warning: unused variable ‘q_data’ [-Wunused-variable]
   65 |    BlastHSPQueueData * q_data = data;
      |                        ^~~~~~
hspfilter_queue.c: In function ‘s_BlastHSPQueueNew’:
hspfilter_queue.c:157:24: warning: assignment to ‘BlastHSPWriterInitFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ [-Wincompatible-pointer-types]
  157 |    writer->InitFnPtr   = &s_BlastHSPQueueInit;
      |                        ^
hspfilter_queue.c:158:24: warning: assignment to ‘BlastHSPWriterFinalFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ [-Wincompatible-pointer-types]
  158 |    writer->FinalFnPtr  = &s_BlastHSPQueueFinal;
      |                        ^
hspfilter_queue.c: In function ‘BlastHSPQueueInfoNew’:
hspfilter_queue.c:189:26: warning: assignment to ‘BlastHSPWriterNewFn’ {aka ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *, BLAST_SequenceBlk *)’} from incompatible pointer type ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *)’ [-Wincompatible-pointer-types]
  189 |    writer_info->NewFnPtr = &s_BlastHSPQueueNew;
      |                          ^
At top level:
hspfilter_queue.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   36 | static char const rcsid[] =
      |                   ^~~~~
rm -f libblastapi.a
ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblastapi.a ../lib
ranlib ../lib/libblastapi.a
i686-linux-gnu-gcc -o asntool -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -DWIN_MOTIF  -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asntool.c:64:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asncode.c:52:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asncode.c: In function ‘AsnCodeGenEnumDefines’:
asncode.c:736:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
  736 |   sprintf (iter->buf, "%s %d\n", AsnCodeCleanName (avtp->name, lclbuf,
      |                           ~^
      |                            |
      |                            int
      |                           %lld
  737 |     CLEAN_FOR_SLOT, iter -> acip -> maxDefineLength), avtp->intvalue);
      |                                                       ~~~~~~~~~~~~~~
      |                                                           |
      |                                                           Nlm_Int8 {aka long long int}
asncode.c: In function ‘AsnCode_SETOF_base_or_user’:
asncode.c:1518:20: warning: variable ‘real_type’ set but not used [-Wunused-but-set-variable]
 1518 |    Int2            real_type;
      |                    ^~~~~~~~~
asncode.c:1517:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable]
 1517 |    CharPtr         valslot;
      |                    ^~~~~~~
asncode.c: In function ‘userobj_and_basetype_SETOF’:
asncode.c:2472:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable]
 2472 |    CharPtr         valslot;
      |                    ^~~~~~~
asncode.c: In function ‘AsnCodeIsReallyChoice’:
asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 3201 |    if (now_atp)
      |       ^
asncode.c: In function ‘AsnCodeFunctionWriteFuncChoiceStart’:
asncode.c:3623:20: warning: variable ‘obj_use’ set but not used [-Wunused-but-set-variable]
 3623 |    CharPtr         obj_use = which_node->obj_name;
      |                    ^~~~~~~
asncode.c: In function ‘AsnCodeIter’:
asncode.c:4238:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 4238 |    if (iter->atp != NULL)
      |       ^
asncode.c: In function ‘AsnCode’:
asncode.c:4317:48: warning: variable ‘objnamety’ set but not used [-Wunused-but-set-variable]
 4317 |    CharPtr objnameuc = NULL, objnamemc = NULL, objnamety = NULL;
      |                                                ^~~~~~~~~
At top level:
asncode.c:291:17: warning: ‘defbyte’ defined but not used [-Wunused-variable]
  291 | static CharPtr  defbyte = "ASNCODE_BYTEVAL_SLOT";
      |                 ^~~~~~~
asncode.c:290:17: warning: ‘defbool’ defined but not used [-Wunused-variable]
  290 | static CharPtr  defbool = "ASNCODE_BOOLVAL_SLOT";
      |                 ^~~~~~~
asncode.c:289:17: warning: ‘defreal’ defined but not used [-Wunused-variable]
  289 | static CharPtr  defreal = "ASNCODE_REALVAL_SLOT";
      |                 ^~~~~~~
asncode.c:288:17: warning: ‘defbigint’ defined but not used [-Wunused-variable]
  288 | static CharPtr  defbigint = "ASNCODE_BIGINTVAL_SLOT";
      |                 ^~~~~~~~~
asncode.c:286:17: warning: ‘defptr’ defined but not used [-Wunused-variable]
  286 | static CharPtr  defptr = "ASNCODE_PTRVAL_SLOT";
      |                 ^~~~~~
/usr/lib/gcc-cross/i686-linux-gnu/10/../../../../i686-linux-gnu/bin/ld: ../lib/libncbi.a(ncbifile.o): in function `Nlm_TmpNam':
./build/ncbifile.c:1211: warning: the use of `tempnam' is dangerous, better use `mkstemp'
cp -p asntool ../bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build -f makenet.unx LCL=lnx CC="i686-linux-gnu-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC" \
    LDFLAGS="-Wl,-z,relro -Wl,-z,now" \
    NETENTREZVERSION="2.02c2ASN1SPEC6" \
    BLIB31=libvibnet.a OGLLIBS="-lGLU -lGL -lpng " all libncbimla.a libnetblast.a libncbitxc2.a libncbiid1.a shlib
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
./ln-if-absent ../connect/test/*.c .
./ln-if-absent ../network/entrez/client/*.h ../include
./ln-if-absent ../network/entrez/client/*.c .
./ln-if-absent ../network/medarch/client/*.h ../include
./ln-if-absent ../network/medarch/client/*.c .
./ln-if-absent ../network/taxonomy/client/*.h ../include
set: No match.
make[2]: [makenet.unx:480: copy] Error 1 (ignored)
./ln-if-absent ../network/taxonomy/client/*.c .
set: No match.
make[2]: [makenet.unx:481: copy] Error 1 (ignored)
./ln-if-absent ../network/taxon1/common/*.h ../include
./ln-if-absent ../network/taxon1/common/*.c .
./ln-if-absent ../network/taxon1/taxon2/*.h ../include
./ln-if-absent ../network/taxon1/taxon2/*.c .
./ln-if-absent ../network/id0arch/client/*.h ../include
set: No match.
make[2]: [makenet.unx:486: copy] Error 1 (ignored)
./ln-if-absent ../network/id0arch/client/*.c .
set: No match.
make[2]: [makenet.unx:487: copy] Error 1 (ignored)
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id1arch/*.c .
./ln-if-absent ../network/id2arch/*.h ../include
./ln-if-absent ../network/id2arch/*.c .
./ln-if-absent ../network/spell/client/*.h ../include
./ln-if-absent ../network/spell/client/*.c .
./ln-if-absent ../network/suggest/client/*.h ../include
./ln-if-absent ../network/suggest/client/*.c .
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/blast3/client/*.c .
./ln-if-absent ../tools/taxblast.h ../include
./ln-if-absent ../tools/taxblast.c .
./ln-if-absent /*.c .
set: No match.
make[2]: [makenet.unx:500: copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.c .
set: No match.
make[2]: [makenet.unx:501: copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.h ../include
set: No match.
make[2]: [makenet.unx:502: copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.c .
set: No match.
make[2]: [makenet.unx:503: copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.h ../include
set: No match.
make[2]: [makenet.unx:504: copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.c .
set: No match.
make[2]: [makenet.unx:505: copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.h ../include
set: No match.
make[2]: [makenet.unx:506: copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.c .
set: No match.
make[2]: [makenet.unx:507: copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.h ../include
set: No match.
make[2]: [makenet.unx:508: copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.c .
set: No match.
make[2]: [makenet.unx:509: copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.h ../include
set: No match.
make[2]: [makenet.unx:510: copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.c .
set: No match.
make[2]: [makenet.unx:511: copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.h ../include
set: No match.
make[2]: [makenet.unx:512: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.c .
set: No match.
make[2]: [makenet.unx:513: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.h ../include
set: No match.
make[2]: [makenet.unx:514: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.c .
set: No match.
make[2]: [makenet.unx:515: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.h ../include
set: No match.
make[2]: [makenet.unx:516: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.c .
set: No match.
make[2]: [makenet.unx:517: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
set: No match.
make[2]: [makenet.unx:518: copy] Error 1 (ignored)
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/nsclilib/*.c .
./ln-if-absent ../network/vibnet/*.c .
./ln-if-absent ../network/vibnet/*.h ../include
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../network/wwwblast/Src/*.c .
./ln-if-absent ../cdromlib/accentr.c .
./ln-if-absent ../cdromlib/accutils.c .
./ln-if-absent ../sequin/*.* .
./ln-if-absent ../demo/entrez.c .
./ln-if-absent ../demo/seqget.c .
./ln-if-absent ../demo/entrcmd.c .
./ln-if-absent ../demo/batch.c .
./ln-if-absent ../demo/qbatch.c .
./ln-if-absent ../demo/elecpcr.c .
./ln-if-absent ../demo/asn2fast.c .
./ln-if-absent ../demo/asn2asn.c .
./ln-if-absent ../demo/cleanasn.c .
./ln-if-absent ../demo/cspeedtest.c .
./ln-if-absent ../demo/sqn2agp.c .
./ln-if-absent ../demo/sugint.c .
./ln-if-absent ../demo/fetchent.c .
./ln-if-absent ../demo/udvmain.c .
./ln-if-absent ../demo/rtestval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asn2ff.c .
./ln-if-absent ../demo/asn2gb.c .
./ln-if-absent ../demo/asn2fsa.c .
./ln-if-absent ../demo/asn2all.c .
./ln-if-absent ../demo/gene2xml.c .
./ln-if-absent ../demo/asnval.c .
./ln-if-absent ../demo/asndisc.c .
./ln-if-absent ../demo/asnbarval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asnmacro.c .
./ln-if-absent ../demo/asnstrip.c .
./ln-if-absent ../demo/tbl2asn.c .
./ln-if-absent ../demo/raw2delt.c .
./ln-if-absent ../demo/flint.c .
./ln-if-absent ../demo/xlint.c .
./ln-if-absent ../demo/diffshift.c .
./ln-if-absent ../demo/gbseqget.c .
./ln-if-absent ../demo/insdseqget.c .
./ln-if-absent ../demo/nps2gps.c .
./ln-if-absent ../demo/testent2.c .
./ln-if-absent ../demo/trna2sap.c .
./ln-if-absent ../demo/trna2tbl.c .
./ln-if-absent ../demo/entrez2.c .
./ln-if-absent ../demo/condense.c .
./ln-if-absent ../demo/spideymain.c .
./ln-if-absent ../demo/dotmain.c .
./ln-if-absent ../demo/ingenmain.c .
./ln-if-absent ../demo/bl2seq.c .
./ln-if-absent ../demo/blastall.c .
./ln-if-absent ../demo/blast_driver.c .
./ln-if-absent ../demo/src_chk.c .
./ln-if-absent ../demo/tbl_chk.c .
./ln-if-absent ../demo/export_cmt.c .
./ln-if-absent ../internal/parser/flat2asn.c .
make[2]: [makenet.unx:577: copy] Error 1 (ignored)
./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
./ln-if-absent ../network/entrez/server/*.* .
set: No match.
make[2]: [makenet.unx:579: copy] Error 1 (ignored)
./ln-if-absent ../network/suggest/server/*.* .
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \""  ni_lib_.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from ni_lib_.c:76:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ni_debug.c:55:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ni_service.c:125:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ni_service.c: In function ‘s_GenericGetService’:
ni_service.c:201:19: warning: unused variable ‘c’ [-Wunused-variable]
  201 |     CONNECTOR     c;
      |                   ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from ../include/ni_error.h:76,
                 from ni_error.c:72:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rm -f libnetcli.a
ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetcli.a ../lib
ranlib ../lib/libnetcli.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from netentr.c:161:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netentr.c: In function ‘s_NetEntTLEvalCount’:
netentr.c:798:5: warning: "/*" within comment [-Wcomment]
  798 |     /*MsgSetReadTimeout(Entrez_ni, 60);*/
      |      
netentr.c: In function ‘s_NetDocSumListGet’:
netentr.c:856:18: warning: variable ‘amp’ set but not used [-Wunused-but-set-variable]
  856 |     AsnModulePtr amp;
      |                  ^~~
netentr.c: In function ‘s_NetTermListByTerm’:
netentr.c:1212:9: warning: variable ‘terms_to_read’ set but not used [-Wunused-but-set-variable]
 1212 |     int terms_to_read;
      |         ^~~~~~~~~~~~~
netentr.c:1200:14: warning: unused variable ‘asnout’ [-Wunused-variable]
 1200 |     AsnIoPtr asnout = Entrez_asnout;
      |              ^~~~~~
netentr.c: In function ‘s_NetTermListByPage’:
netentr.c:1343:14: warning: unused variable ‘asnout’ [-Wunused-variable]
 1343 |     AsnIoPtr asnout = Entrez_asnout;
      |              ^~~~~~
netentr.c: In function ‘NetEntTLEval’:
netentr.c:675:12: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  675 |     return lsp;
      |            ^~~
netentr.c: In function ‘NetEntTLEvalCount’:
netentr.c:800:8: warning: ‘atp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  800 |     if (atp == ENTREZ_BACK_eval_count)
      |        ^
netentr.c:782:16: note: ‘atp’ was declared here
  782 |     AsnTypePtr atp;
      |                ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from netlib.c:82:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netlib.c: In function ‘BoolExprAsnWrite’:
netlib.c:307:16: warning: unused variable ‘n’ [-Wunused-variable]
  307 |     static int n = 0;
      |                ^
At top level:
netlib.c:307:16: warning: ‘n’ defined but not used [-Wunused-variable]
netlib.c:96:16: warning: ‘loaded’ defined but not used [-Wunused-variable]
   96 | static Boolean loaded = FALSE;
      |                ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnneten.h:9,
                 from objneten.c:86:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objneten.c: In function ‘NetEntAsnLoad’:
objneten.c:106:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  106 |     if (loaded)
      |     ^~
objneten.c:108:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  108 |         loaded = TRUE;
      |         ^~~~~~
objneten.c: In function ‘EntrezNeighborTextAsnRead’:
objneten.c:2938:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2938 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘ChildLinkAsnRead’:
objneten.c:3148:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3148 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘EntrezHierarchyAsnRead’:
objneten.c:3442:15: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3442 |   AsnReadFunc func;
      |               ^~~~
objneten.c: In function ‘EntrezBlastreqAsnRead’:
objneten.c:3705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3705 |    AsnReadFunc func;
      |                ^~~~
objneten.c:3704:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3704 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘EntrezExtraInfoAsnRead’:
objneten.c:3911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3911 |    AsnReadFunc func;
      |                ^~~~
objneten.c:3910:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘ClusterArticlesAsnRead’:
objneten.c:4262:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4262 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4261:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4261 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘ClusterRespAsnRead’:
objneten.c:4455:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4455 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘DateConstraintsAsnRead’:
objneten.c:4622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4622 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘DateVectorAsnRead’:
objneten.c:4785:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4785 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4784:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4784 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘GetByFidAsnRead’:
objneten.c:4963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4963 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4962:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4962 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘GetFeatIdsAsnRead’:
objneten.c:5133:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5133 |    AsnReadFunc func;
      |                ^~~~
objneten.c:5132:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5132 |    Boolean isError = FALSE;
      |            ^~~~~~~
rm -f libnetentr.a
ar cru libnetentr.a netentr.o netlib.o objneten.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetentr.a ../lib
ranlib ../lib/libnetentr.a
./ln-if-absent accentr.c Naccentr.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Naccentr.c:297:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Naccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces]
  357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = {
      |                                                                                             ^
  358 |   8,  6,  3,  3,
      |   {            }
  359 |   8,  6,  3,  3,
      |   {            }
  360 |   8,  6,  3,  3,
      |   {            }
  361 |   8,  6,  3,  3,
      |   {            }
  362 |   9,  7,  4,  3,
      |   {            }
  363 |   9,  8,  5,  3,
      |   {            }
  364 |  10,  9,  5,  3,
      |  {             }
  365 |  10, 10,  5,  3,
      |  {             }
  366 |  11, 10,  5,  3,
      |  {             }
  367 |  11, 11,  5,  3,
      |  {             }
  368 |  12, 11,  5,  3,
      |  {             }
  369 |  12, 11,  5,  3,
      |  {             }
  370 |  12, 11,  5,  3
      |  {
  371 | };
      | }
Naccentr.c: In function ‘EntrezDocSumListGet’:
Naccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable]
 1409 |   Int2       actual;
      |              ^~~~~~
Naccentr.c: In function ‘EntrezGIForSeqIdFunc’:
Naccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
Naccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
rm -f libncbiNacc.a
ar cru libncbiNacc.a Naccentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiNacc.a ../lib
ranlib ../lib/libncbiNacc.a
./ln-if-absent accentr.c Caccentr.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Caccentr.c:297:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Caccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces]
  357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = {
      |                                                                                             ^
  358 |   8,  6,  3,  3,
      |   {            }
  359 |   8,  6,  3,  3,
      |   {            }
  360 |   8,  6,  3,  3,
      |   {            }
  361 |   8,  6,  3,  3,
      |   {            }
  362 |   9,  7,  4,  3,
      |   {            }
  363 |   9,  8,  5,  3,
      |   {            }
  364 |  10,  9,  5,  3,
      |  {             }
  365 |  10, 10,  5,  3,
      |  {             }
  366 |  11, 10,  5,  3,
      |  {             }
  367 |  11, 11,  5,  3,
      |  {             }
  368 |  12, 11,  5,  3,
      |  {             }
  369 |  12, 11,  5,  3,
      |  {             }
  370 |  12, 11,  5,  3
      |  {
  371 | };
      | }
Caccentr.c: In function ‘EntrezDocSumListGet’:
Caccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable]
 1409 |   Int2       actual;
      |              ^~~~~~
Caccentr.c: In function ‘EntrezGIForSeqIdFunc’:
Caccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
Caccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
rm -f libncbiCacc.a
ar cru libncbiCacc.a Caccentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiCacc.a ../lib
ranlib ../lib/libncbiCacc.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from netcnfg.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netcnfg.c: In function ‘ShowNetConfigForm’:
netcnfg.c:319:23: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
  319 |   PrompT        ppt0, ppt1;
      |                       ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from trmlst.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
trmlst.c: In function ‘FetchFromTermList’:
trmlst.c:1048:16: warning: variable ‘numRead’ set but not used [-Wunused-but-set-variable]
 1048 |   Int2         numRead;
      |                ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
docsum.c: In function ‘ImportDocSumForm’:
docsum.c:2298:21: warning: unused variable ‘sephead’ [-Wunused-variable]
 2298 |   SeqEntryPtr       sephead = NULL;
      |                     ^~~~~~~
docsum.c:2296:21: warning: unused variable ‘is_na’ [-Wunused-variable]
 2296 |   Boolean           is_na = TRUE;
      |                     ^~~~~
docsum.c:2290:21: warning: unused variable ‘choice’ [-Wunused-variable]
 2290 |   Uint1             choice = 0;
      |                     ^~~~~~
docsum.c: In function ‘SaveDocsumProject’:
docsum.c:3042:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 3042 |   SummFormPtr  sfp;
      |                ^~~
docsum.c: In function ‘LaunchStructureViewer’:
docsum.c:4192:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4192 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
docsum.c:439:15: warning: ‘checkmark’ defined but not used [-Wunused-variable]
  439 | static Uint1  checkmark [] = {
      |               ^~~~~~~~~
docsum.c: In function ‘SetDefaultFailureMessage’:
docsum.c:687:48: warning: ‘ in ’ directive writing 4 bytes into a region of size between 3 and 42 [-Wformat-overflow=]
  687 |       sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname);
      |                                                ^~~~
docsum.c:687:21: note: assuming directive output of 3 bytes
  687 |       sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 78) into a destination of size 64
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
docsum.c: In function ‘FetchLocalBioseq’:
docsum.c:1223:6: warning: ‘str’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1223 |   if (str == NULL) return failed;
      |      ^
docsum.c: In function ‘LaunchStructureViewer.constprop’:
docsum.c:4191:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=]
 4191 |   sprintf (cmmd, "Cn3D %s &", path);
      |                        ^~     ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libvibnet.a
ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibnet.a ../lib
ranlib ../lib/libvibnet.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmla.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmla.c: In function ‘MlaRequestFree’:
objmla.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objmla.c: In function ‘MlaRequestAsnRead’:
objmla.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable]
   96 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla.c: In function ‘TitleMsgAsnRead’:
objmla.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  447 |    AsnReadFunc func;
      |                ^~~~
objmla.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable]
  446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla.c: In function ‘TitleMsgListAsnRead’:
objmla.c:612:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  612 |    AsnReadFunc func;
      |                ^~~~
objmla.c: In function ‘MlaRequestAsnRead’:
objmla.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  249 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmla.c: In function ‘MlaBackAsnRead’:
objmla.c:902:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  902 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from medarch.c:122:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medarch.c:758:8: warning: ‘s_MedArchPubSetEntryGetUid’ defined but not used [-Wunused-function]
  758 | /*FCN*/s_MedArchPubSetEntryGetUid (
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~
medarch.c:710:8: warning: ‘s_MedArchPubSetEntryGetPmId’ defined but not used [-Wunused-function]
  710 | /*FCN*/s_MedArchPubSetEntryGetPmId (
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
medarch.c: In function ‘MedArchPubSetCreate’:
medarch.c:1693:9: warning: ‘pubSetEAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1693 |         MedlineEntryAsnWrite (lastmep, aip, pubSetEAtp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ni_types.h:85,
                 from ../include/ncbinet.h:84,
                 from medarch.c:122:
../include/asn.h:495:27: warning: ‘pubSetAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  495 | #define AsnEndStruct(x,y) AsnCloseStruct(x, y, NULL)
      |                           ^~~~~~~~~~~~~~
medarch.c:1625:16: note: ‘pubSetAtp’ was declared here
 1625 |     AsnTypePtr pubSetAtp;
      |                ^~~~~~~~~
medarch.c:1655:5: warning: ‘startAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1655 |     AsnWrite (aip, startAtp, NULL);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/medutil.h:79,
                 from medutil.c:58:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medutil.c: In function ‘FixPubEquiv’:
medutil.c:1134:16: warning: variable ‘got’ set but not used [-Wunused-but-set-variable]
 1134 |     Boolean    got;
      |                ^~~
rm -f libncbimla.a
ar cru libncbimla.a objmla.o medarch.o medutil.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbimla.a ../lib
ranlib ../lib/libncbimla.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objblst3.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objblst3.c: In function ‘BlastSearchAsnRead’:
objblst3.c:91:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   91 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable]
   90 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastRequestFree’:
objblst3.c:287:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  287 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastRequestAsnRead’:
objblst3.c:337:12: warning: unused variable ‘isError’ [-Wunused-variable]
  337 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff2_cutoff2Free’:
objblst3.c:999:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  999 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastParametersAsnRead’:
objblst3.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1027 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘Cutoff2_cutoff2AsnRead’:
objblst3.c:1422:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1422 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff_cutoffAsnRead’:
objblst3.c:1788:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1788 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff_cutoffFree’:
objblst3.c:1871:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1871 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastMatrixAsnRead’:
objblst3.c:1936:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1936 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastDbinfoAsnRead’:
objblst3.c:2153:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2153 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2152:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2152 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastMaskAsnRead’:
objblst3.c:2357:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2357 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastKABlkAsnRead’:
objblst3.c:2517:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2517 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2516:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2516 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastErrorAsnRead’:
objblst3.c:2697:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2697 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2696:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2696 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastPhialignAsnRead’:
objblst3.c:2861:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2861 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastDbinfoGetAsnRead’:
objblst3.c:3022:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3022 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3021:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3021 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastSeqIdAsnRead’:
objblst3.c:3187:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3187 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3186:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3186 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastSequenceAsnRead’:
objblst3.c:3364:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3364 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3363:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3363 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastPartsAsnRead’:
objblst3.c:3532:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3532 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastQueuedAsnRead’:
objblst3.c:3694:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3694 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3693:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3693 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastProgressAsnRead’:
objblst3.c:3846:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3846 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3845:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3845 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastDeflineAsnRead’:
objblst3.c:4000:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4000 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3999:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3999 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastVersionAsnRead’:
objblst3.c:4168:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4168 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:4167:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4167 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘MegaBlastHitAsnRead’:
objblst3.c:4335:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4335 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:4334:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4334 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘MegaBlastResultsAsnRead’:
objblst3.c:4546:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4546 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastRequestAsnRead’:
objblst3.c:430:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  430 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c: In function ‘BlastResponseAsnRead’:
objblst3.c:791:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  791 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c: In function ‘BlastParametersAsnRead’:
objblst3.c:1474:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1474 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c:1421:10: note: ‘choice’ was declared here
 1421 |    Uint1 choice;
      |          ^~~~~~
objblst3.c:1840:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1840 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c:1787:10: note: ‘choice’ was declared here
 1787 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from netblap3.c:359:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netblap3.c: In function ‘BlastNetBioseqFetchFunc’:
netblap3.c:1835:16: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable]
 1835 |  OMUserDataPtr omdp;
      |                ^~~~
netblap3.c: In function ‘MegaBlastSeqLocNetCore’:
netblap3.c:2049:8: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 2049 |  Uint2 entityID = 0;
      |        ^~~~~~~~
In file included from ../include/netblap3.h:135,
                 from netblap3.c:364:
netblap3.c: At top level:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
netblap3.c:452:1: warning: ‘BlastResetOldHook’ defined but not used [-Wunused-function]
  452 | BlastResetOldHook(void)
      | ^~~~~~~~~~~~~~~~~
netblap3.c:445:1: warning: ‘BlastGetErrorStatus’ defined but not used [-Wunused-function]
  445 | BlastGetErrorStatus(void)
      | ^~~~~~~~~~~~~~~~~~~
netblap3.c:438:1: warning: ‘BlastSetErrorStatus’ defined but not used [-Wunused-function]
  438 | BlastSetErrorStatus(Boolean status)
      | ^~~~~~~~~~~~~~~~~~~
netblap3.c:430:1: warning: ‘BlastSetErrorHook’ defined but not used [-Wunused-function]
  430 | BlastSetErrorHook(void)
      | ^~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from netblap3.c:364:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
netblap3.c: In function ‘BlastNetMatrixToBlastMatrix’:
netblap3.c:1212:35: warning: ‘index2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1212 |  if (index1 != blast_matrix->rows || index2 != blast_matrix->columns)
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netblap3.c: In function ‘SubmitRequest’:
netblap3.c:1763:18: warning: ‘bllist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1763 |     bllist->next = blresp;
      |     ~~~~~~~~~~~~~^~~~~~~~
netblap3.c:1698:19: note: ‘bllist’ was declared here
 1698 |  BlastResponsePtr bllist, blresp, head;
      |                   ^~~~~~
netblap3.c: In function ‘TraditionalBlastReportEngine’:
netblap3.c:2570:11: warning: ‘next_seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2570 |     while (seqalign) {
      |           ^
rm -f libnetblast.a
ar cru libnetblast.a objblst3.o netblap3.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetblast.a ../lib
ranlib ../lib/libnetblast.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtax1.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtax1.c: In function ‘Taxon1ReqFree’:
objtax1.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objtax1.c: In function ‘Taxon1ReqAsnRead’:
objtax1.c:92:12: warning: unused variable ‘isError’ [-Wunused-variable]
   92 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1InfoAsnRead’:
objtax1.c:502:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  502 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:501:12: warning: unused variable ‘isError’ [-Wunused-variable]
  501 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1ErrorAsnRead’:
objtax1.c:1131:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1131 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1130:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1130 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1NameAsnRead’:
objtax1.c:1296:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1296 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1295:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1295 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1DataAsnRead’:
objtax1.c:1482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1482 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1481:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1481 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon2DataAsnRead’:
objtax1.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1670 |    AsnReadFunc func;
      |                ^~~~
objtax1.c: In function ‘Taxon1ReqAsnRead’:
objtax1.c:284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  284 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax1.c: In function ‘Taxon1RespAsnRead’:
objtax1.c:920:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  920 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/utilpub.h:4,
                 from taxutil.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxutil.c: In function ‘taxname_match’:
taxutil.c:66:24: warning: unused variable ‘taxstr’ [-Wunused-variable]
   66 |    CharPtr             taxstr = NULL;
      |                        ^~~~~~
taxutil.c: In function ‘get_lineage’:
taxutil.c:140:28: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 |   return Nlm_StringSave(onp->lineage);
      |                         ~~~^~~~~~~~~
taxutil.c: In function ‘get_gcode’:
taxutil.c:160:23: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  160 |    gclp->genomic = onp->gcode;
      |                    ~~~^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
tc2proc.c: In function ‘getIdByOrgRef’:
tc2proc.c:407:17: warning: unused variable ‘om_flag’ [-Wunused-variable]
  407 |         Boolean om_flag= FALSE;
      |                 ^~~~~~~
tc2proc.c: In function ‘bldLineage’:
tc2proc.c:1095:10: warning: unused variable ‘rank’ [-Wunused-variable]
 1095 |     Int2 rank= 0;
      |          ^~~~
tc2proc.c: In function ‘storedTaxId’:
tc2proc.c:2114:17: warning: unused variable ‘object_id’ [-Wunused-variable]
 2114 |     ObjectIdPtr object_id;
      |                 ^~~~~~~~~
tc2proc.c: In function ‘tax1e_needUpdate’:
tc2proc.c:2181:13: warning: unused variable ‘hit_name’ [-Wunused-variable]
 2181 |     CharPtr hit_name;
      |             ^~~~~~~~
tc2proc.c:2180:13: warning: unused variable ‘need_search_name’ [-Wunused-variable]
 2180 |     Boolean need_search_name= TRUE;
      |             ^~~~~~~~~~~~~~~~
tc2proc.c:2179:9: warning: unused variable ‘is_species’ [-Wunused-variable]
 2179 |     int is_species;
      |         ^~~~~~~~~~
tc2proc.c:2176:19: warning: unused variable ‘res’ [-Wunused-variable]
 2176 |     Taxon1DataPtr res;
      |                   ^~~
At top level:
tc2proc.c:403:13: warning: ‘getIdByOrgRef’ defined but not used [-Wunused-function]
  403 | static Int4 getIdByOrgRef(CharPtr sname, OrgNamePtr orNm)
      |             ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from txcdproc.c:116:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/txclient.h:73,
                 from parttree.c:79:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
parttree.c: In function ‘tax_ptree_addSubtree’:
parttree.c:392:13: warning: unused variable ‘need_remove’ [-Wunused-variable]
  392 |     Boolean need_remove= FALSE;
      |             ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from taxblast.c:161:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxblast.c: In function ‘TXBHtmlReportInternal’:
taxblast.c:1359:37: warning: variable ‘linlines’ set but not used [-Wunused-but-set-variable]
 1359 |     Int2 numtaxa, numorgs, numhits, linlines, longname;
      |                                     ^~~~~~~~
taxblast.c: In function ‘RDTaxLookupReset’:
taxblast.c:2050:1: warning: control reaches end of non-void function [-Wreturn-type]
 2050 | }
      | ^
At top level:
taxblast.c:1967:13: warning: ‘getTotalTaxIdCount’ defined but not used [-Wunused-function]
 1967 | static Int4 getTotalTaxIdCount(TreeCursorPtr cursor)
      |             ^~~~~~~~~~~~~~~~~~
taxblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: taxblast.c,v 6.31 2015/07/06 19:25:47 madden Exp $";
      |                   ^~~~~
taxblast.c: In function ‘TXBGetTargetGi’:
taxblast.c:504:12: warning: ‘gi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  504 |     return gi;
      |            ^~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from taxblast.c:161:
In function ‘strncpy’,
    inlined from ‘TXBHtmlReportInternal’ at taxblast.c:1491:17,
    inlined from ‘TXBHtmlReport’ at taxblast.c:1803:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound 128 equals destination size [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbitxc2.a
ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbitxc2.a ../lib
ranlib ../lib/libncbitxc2.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from id1gen.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
id1gen.c: In function ‘ID1serverRequestFree’:
id1gen.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
id1gen.c: In function ‘ID1serverRequestAsnRead’:
id1gen.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable]
   90 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1serverMaxcomplexAsnRead’:
id1gen.c:348:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  348 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:347:12: warning: unused variable ‘isError’ [-Wunused-variable]
  347 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1SeqHistAsnRead’:
id1gen.c:530:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  530 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:529:12: warning: unused variable ‘isError’ [-Wunused-variable]
  529 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1SeqEntryInfoAsnRead’:
id1gen.c:979:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  979 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:978:12: warning: unused variable ‘isError’ [-Wunused-variable]
  978 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1blobInfoAsnRead’:
id1gen.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1147 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:1146:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1146 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1serverDebugAsnRead’:
id1gen.c:1368:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1368 |    AsnReadFunc func;
      |                ^~~~
id1gen.c: In function ‘ID1serverBackAsnRead’:
id1gen.c:811:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  811 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
id1gen.c: In function ‘ID1serverRequestAsnRead’:
id1gen.c:186:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  186 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from id1arch.c:31:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
id1arch.c: In function ‘ID1ArchSeqEntryGet’:
id1arch.c:173:7: warning: unused variable ‘retval’ [-Wunused-variable]
  173 |  Int4 retval = 0;
      |       ^~~~~~
id1arch.c: In function ‘ID1ArchGIGet’:
id1arch.c:486:10: warning: unused variable ‘retval’ [-Wunused-variable]
  486 |     Int4 retval = 0;
      |          ^~~~~~
id1arch.c: In function ‘SeqHistPrintTable’:
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
  553 |                                         sprintf(repl_date,"%0.2d/%0.2d/%0.4d",
      |                                                           ^~~~~~~~~~~~~~~~~~~
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
id1arch.c:563:47: warning: spurious trailing ‘%’ in format [-Wformat=]
  563 |                         fprintf(fp,"%-20d%-20s%",old_gi,repl_date);
      |                                               ^
id1arch.c:558:65: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=]
  558 |                                         sprintf(repl_date,"%-20s",shp->replace_date->str);
      |                                                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from id1arch.c:31:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from accid1.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
accid1.c: In function ‘s_ID1BioseqFetchFunc’:
accid1.c:262:9: warning: unused variable ‘retcode’ [-Wunused-variable]
  262 |  Int2   retcode=0;
      |         ^~~~~~~
rm -f libncbiid1.a
ar cru libncbiid1.a id1gen.o id1arch.o accid1.o 
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiid1.a ../lib
ranlib ../lib/libncbiid1.a
mkdir ../shlib
rm -f ../shlib/*.a
ln ../lib/*.a ../shlib
cd ../shlib; make -f ../make/makeshlb.unx `ls *.a | sed "s/\.a/.so.6/"` SH1="i686-linux-gnu-gcc -o" SH2="-shared *.o"
make[3]: Entering directory '/<<PKGBUILDDIR>>/shlib'
i686-linux-gnu-gcc -shared -Wl,-soname=libblastcompadj.so.6 -o libblastcompadj.so.6.1.20170106 \
    -Wl,--whole-archive libblastcompadj.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
     -lm
i686-linux-gnu-gcc -shared -Wl,-soname=libncbi.so.6 -o libncbi.so.6.1.20170106 \
    -Wl,--whole-archive libncbi.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
     -lm
/usr/lib/gcc-cross/i686-linux-gnu/10/../../../../i686-linux-gnu/bin/ld: libncbi.a(ncbifile.o): in function `Nlm_TmpNam':
./build/ncbifile.c:1211: warning: the use of `tempnam' is dangerous, better use `mkstemp'
i686-linux-gnu-gcc -shared -Wl,-soname=libblast.so.6 -o libblast.so.6.1.20170106 \
    -Wl,--whole-archive libblast.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libblastcompadj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
ln -s libblast.so.6.1.20170106 libblast.so.6
ln -s libblast.so.6.1.20170106 libblast.so
i686-linux-gnu-gcc -shared -Wl,-soname=libncbiobj.so.6 -o libncbiobj.so.6.1.20170106 \
    -Wl,--whole-archive libncbiobj.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbi.so.6.1.20170106 -lm
i686-linux-gnu-gcc -shared -Wl,-soname=libncbitool.so.6 -o libncbitool.so.6.1.20170106 \
    -Wl,--whole-archive libncbitool.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libblastcompadj.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
i686-linux-gnu-gcc -shared -Wl,-soname=libblastapi.so.6 -o libblastapi.so.6.1.20170106 \
    -Wl,--whole-archive libblastapi.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libblast.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
ln -s libblastapi.so.6.1.20170106 libblastapi.so.6
ln -s libblastapi.so.6.1.20170106 libblastapi.so
ln -s libblastcompadj.so.6.1.20170106 libblastcompadj.so.6
ln -s libblastcompadj.so.6.1.20170106 libblastcompadj.so
i686-linux-gnu-gcc -shared -Wl,-soname=libconnssl.so.6 -o libconnssl.so.6.1.20170106 \
    -Wl,--whole-archive libconnssl.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbi.so.6.1.20170106 -lgnutls
ln -s libconnssl.so.6.1.20170106 libconnssl.so.6
ln -s libconnssl.so.6.1.20170106 libconnssl.so
i686-linux-gnu-gcc -shared -Wl,-soname=libnetcli.so.6 -o libnetcli.so.6.1.20170106 \
    -Wl,--whole-archive libnetcli.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbi.so.6.1.20170106 
i686-linux-gnu-gcc -shared -Wl,-soname=libncbiid1.so.6 -o libncbiid1.so.6.1.20170106 \
    -Wl,--whole-archive libncbiid1.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiobj.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbi.so.6.1.20170106 
i686-linux-gnu-gcc -shared -Wl,-soname=libncbimmdb.so.6 -o libncbimmdb.so.6.1.20170106 \
    -Wl,--whole-archive libncbimmdb.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiid1.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
i686-linux-gnu-gcc -shared -Wl,-soname=libvibrantOGL.so.6 -o libvibrantOGL.so.6.1.20170106 \
    -Wl,--whole-archive libvibrantOGL.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lGLU -lGL -lpng  -lXm -lXmu -lXt -lX11  -lm
i686-linux-gnu-gcc -shared -Wl,-soname=libncbidesk.so.6 -o libncbidesk.so.6.1.20170106 \
    -Wl,--whole-archive libncbidesk.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libblastapi.so.6.1.20170106 libncbimmdb.so.6.1.20170106 libncbitool.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
i686-linux-gnu-gcc -shared -Wl,-soname=libddvlib.so.6 -o libddvlib.so.6.1.20170106 \
    -Wl,--whole-archive libddvlib.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbidesk.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 
ln -s libddvlib.so.6.1.20170106 libddvlib.so.6
ln -s libddvlib.so.6.1.20170106 libddvlib.so
ln -s libncbi.so.6.1.20170106 libncbi.so.6
ln -s libncbi.so.6.1.20170106 libncbi.so
ln -s libncbiNacc.so.6.1.20170106 libncbiCacc.so.6.1.20170106
ln -s libncbiCacc.so.6.1.20170106 libncbiCacc.so.6
ln -s libncbiCacc.so.6.1.20170106 libncbiCacc.so
i686-linux-gnu-gcc -shared -Wl,-soname=libncbicdr.so.6 -o libncbicdr.so.6.1.20170106 \
    -Wl,--whole-archive libncbicdr.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 
i686-linux-gnu-gcc -shared -Wl,-soname=libncbiNacc.so.6 -o libncbiNacc.so.6.1.20170106 \
    -Wl,--whole-archive libncbiNacc.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbicdr.so.6.1.20170106 libnetentr.a libnetcli.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
ln -s libncbiNacc.so.6.1.20170106 libncbiNacc.so.6
ln -s libncbiNacc.so.6.1.20170106 libncbiNacc.so
ln -s libncbiNacc.so.6.1.20170106 libncbiacc.so.6.1.20170106
ln -s libncbiacc.so.6.1.20170106 libncbiacc.so.6
ln -s libncbiacc.so.6.1.20170106 libncbiacc.so
ln -s libncbicdr.so.6.1.20170106 libncbicdr.so.6
ln -s libncbicdr.so.6.1.20170106 libncbicdr.so
ln -s libncbicn3dOGL.so.6.1.20170106 libncbicn3d.so.6.1.20170106
ln -s libncbicn3d.so.6.1.20170106 libncbicn3d.so.6
ln -s libncbicn3d.so.6.1.20170106 libncbicn3d.so
i686-linux-gnu-gcc -shared -Wl,-soname=libncbicn3dOGL.so.6 -o libncbicn3dOGL.so.6.1.20170106 \
    -Wl,--whole-archive libncbicn3dOGL.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiNacc.so.6.1.20170106 libddvlib.so.6.1.20170106 libncbidesk.so.6.1.20170106 libncbimmdb.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 -lm
ln -s libncbicn3dOGL.so.6.1.20170106 libncbicn3dOGL.so.6
ln -s libncbicn3dOGL.so.6.1.20170106 libncbicn3dOGL.so
ln -s libncbidesk.so.6.1.20170106 libncbidesk.so.6
ln -s libncbidesk.so.6.1.20170106 libncbidesk.so
ln -s libncbiid1.so.6.1.20170106 libncbiid1.so.6
ln -s libncbiid1.so.6.1.20170106 libncbiid1.so
i686-linux-gnu-gcc -shared -Wl,-soname=libncbimla.so.6 -o libncbimla.so.6.1.20170106 \
    -Wl,--whole-archive libncbimla.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiobj.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbi.so.6.1.20170106 
ln -s libncbimla.so.6.1.20170106 libncbimla.so.6
ln -s libncbimla.so.6.1.20170106 libncbimla.so
ln -s libncbimmdb.so.6.1.20170106 libncbimmdb.so.6
ln -s libncbimmdb.so.6.1.20170106 libncbimmdb.so
ln -s libncbiobj.so.6.1.20170106 libncbiobj.so.6
ln -s libncbiobj.so.6.1.20170106 libncbiobj.so
ln -s libncbitool.so.6.1.20170106 libncbitool.so.6
ln -s libncbitool.so.6.1.20170106 libncbitool.so
i686-linux-gnu-gcc -shared -Wl,-soname=libncbitxc2.so.6 -o libncbitxc2.so.6.1.20170106 \
    -Wl,--whole-archive libncbitxc2.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbitool.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
ln -s libncbitxc2.so.6.1.20170106 libncbitxc2.so.6
ln -s libncbitxc2.so.6.1.20170106 libncbitxc2.so
i686-linux-gnu-gcc -shared -Wl,-soname=libnetblast.so.6 -o libnetblast.so.6.1.20170106 \
    -Wl,--whole-archive libnetblast.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbitool.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 
ln -s libnetblast.so.6.1.20170106 libnetblast.so.6
ln -s libnetblast.so.6.1.20170106 libnetblast.so
ln -s libnetcli.so.6.1.20170106 libnetcli.so.6
ln -s libnetcli.so.6.1.20170106 libnetcli.so
ln -s libncbiNacc.so.6.1.20170106 libnetentr.so.6.1.20170106
ln -s libnetentr.so.6.1.20170106 libnetentr.so.6
ln -s libnetentr.so.6.1.20170106 libnetentr.so
i686-linux-gnu-gcc -shared -Wl,-soname=libvibgif.so.6 -o libvibgif.so.6.1.20170106 \
    -Wl,--whole-archive libvibgif.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbi.so.6.1.20170106 -lm
ln -s libvibgif.so.6.1.20170106 libvibgif.so.6
ln -s libvibgif.so.6.1.20170106 libvibgif.so
i686-linux-gnu-gcc -shared -Wl,-soname=libvibnet.so.6 -o libvibnet.so.6.1.20170106 \
    -Wl,--whole-archive libvibnet.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiNacc.so.6.1.20170106 libncbidesk.so.6.1.20170106 libncbimmdb.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbicdr.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 
ln -s libvibnet.so.6.1.20170106 libvibnet.so.6
ln -s libvibnet.so.6.1.20170106 libvibnet.so
ln -s libvibrantOGL.so.6.1.20170106 libvibrant.so.6.1.20170106
ln -s libvibrant.so.6.1.20170106 libvibrant.so.6
ln -s libvibrant.so.6.1.20170106 libvibrant.so
ln -s libvibrantOGL.so.6.1.20170106 libvibrantOGL.so.6
ln -s libvibrantOGL.so.6.1.20170106 libvibrantOGL.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/shlib'
rm -f ../shlib/*.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
rm -f *.[acho] *.glo
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build all LCL=lnx CC="i686-linux-gnu-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG" \
    LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
    LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
rm -f ../include/asn.h
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_assert.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_connssl.h .
./ln-if-absent ../connect/ncbi_lbos.h .
./ln-if-absent ../connect/ncbi_lbosp.h .
./ln-if-absent ../connect/parson.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
make[2]: [makefile:714: copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
make[2]: [makefile:715: copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_socketp.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/ncbi_local.h .
./ln-if-absent ../connect/ncbi_lb.h .
./ln-if-absent ../connect/ncbi_version.h .
./ln-if-absent ../connect/ncbi_base64.h .
./ln-if-absent ../connect/urlquery.h ../include
mkdir ../include/connect
mkdir: cannot create directory ‘../include/connect’: File exists
make[2]: [makefile:727: copy] Error 1 (ignored)
chmod ug+rw,o+r ../include/connect
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../util/tables/*.c .
mkdir -p ../include/util/tables
cp -fp ../util/tables/*.h ../include/util/tables
./ln-if-absent ../util/creaders/*.c .
mkdir -p ../include/util/creaders
cp -fp ../util/creaders/*.h ../include/util/creaders
./ln-if-absent ../ctools/*.c .
./ln-if-absent ../ctools/*.h .
mkdir ../include/ctools
mkdir: cannot create directory ‘../include/ctools’: File exists
make[2]: [makefile:738: copy] Error 1 (ignored)
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../api/*.inc .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
set: No match.
make[2]: [makefile:771: copy] Error 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
set: No match.
make[2]: [makefile:772: copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
set: No match.
make[2]: [makefile:773: copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
set: No match.
make[2]: [makefile:774: copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
set: No match.
make[2]: [makefile:775: copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
set: No match.
make[2]: [makefile:776: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
set: No match.
make[2]: [makefile:777: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
set: No match.
make[2]: [makefile:778: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
set: No match.
make[2]: [makefile:779: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
make[2]: [makefile:780: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
set: No match.
make[2]: [makefile:781: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
set: No match.
make[2]: [makefile:782: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
set: No match.
make[2]: [makefile:783: copy] Error 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id2arch/*.h ../include
mkdir -p ../include/algo/blast/core
./ln-if-absent ../algo/blast/core/*.c .
./ln-if-absent ../algo/blast/core/*.h .
./ln-if-absent ../algo/blast/core/*.inl .
cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
mkdir -p ../include/algo/blast/composition_adjustment
./ln-if-absent ../algo/blast/composition_adjustment/*.c .
cp -fp ../algo/blast/composition_adjustment/*.h \
	../include/algo/blast/composition_adjustment
mkdir -p ../include/algo/blast/api
./ln-if-absent ../algo/blast/api/*.c .
cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbithr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ncbithr.c:289:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbithr.c: In function ‘s_TlsDestroyAll’:
ncbithr.c:2529:11: warning: variable ‘err_code’ set but not used [-Wunused-but-set-variable]
 2529 |       int err_code = 0;
      |           ^~~~~~~~
cp -p ncbithr.o ../lib
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimain.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimain.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimain.c:82:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
   82 | main(int argc, char *argv[])
      | ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbibs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbibs.c:55:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbibs.c: In function ‘Nlm_BSSeek’:
ncbibs.c:448:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  448 |     if (sp == bsp->seekptr)     /* already in right position */
      |     ^~
ncbibs.c:451:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  451 |  bsp->seekptr = sp;
      |  ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF wwwutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbiwww.h:106,
                 from wwwutils.c:150:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbierr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbierr.c:235:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbierr.c:235:
In function ‘strncat’,
    inlined from ‘ErrMsgRoot_fopen’ at ncbierr.c:955:13:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 4096 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbienv.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
In function ‘strncpy’,
    inlined from ‘Nlm_WorkGetAppParam.part.0’ at ncbienv.c:466:11:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from corepriv.h:85,
                 from ncbienv.c:310:
ncbienv.c: In function ‘Nlm_WorkGetAppParam.part.0’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’
  305 | #define StrLen  Nlm_StrLen
      |                 ^~~~~~~~~~
ncbienv.c:464:36: note: in expansion of macro ‘StrLen’
  464 |           Nlm_Int2 bytesToAppend = StrLen(eip->name) + 1;
      |                                    ^~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
In function ‘strncpy’,
    inlined from ‘Nlm_TransientLookup.part.0’ at ncbienv.c:1788:15:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from corepriv.h:85,
                 from ncbienv.c:310:
ncbienv.c: In function ‘Nlm_TransientLookup.part.0’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’
  305 | #define StrLen  Nlm_StrLen
      |                 ^~~~~~~~~~
ncbienv.c:1786:31: note: in expansion of macro ‘StrLen’
 1786 |               bytesToAppend = StrLen(eip->name) + 1;
      |                               ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbifile.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbifile.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbiprop.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbiprop.c:104:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimath.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbimath.h:69,
                 from ncbimath.c:90:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimath.c: In function ‘general_lngamma’:
ncbimath.c:230:5: warning: ‘y[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  230 |  ++y[0];
      |    ~^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimem.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimem.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimisc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimisc.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimisc.c: In function ‘Nlm_MD5Final’:
ncbimisc.c:2250:26: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess]
 2250 |     memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */
      |                          ^
ncbimisc.c: In function ‘XmlPathSuffixIs’:
ncbimisc.c:2966:58: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2966 |     if (StringHasNoText (parentFilter) || parent != NULL && StringICmp (parent->name, parentFilter) == 0) {
      |                                           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimsg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbimsg.c:167:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbistr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbistr.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisgml.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbisgml.c:83:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ncbisgml.c:83:
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbitime.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbitime.c:77:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbilang.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbilang.c:57:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnbufo.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asnbufo.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asndebin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asndebin.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asndebin.c: In function ‘AsnBinReadVal’:
asndebin.c:565:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  565 |     else
      |     ^~~~
asndebin.c:568:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  568 |  if (atp == NULL)
      |  ^~
asndebin.c:634:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  634 |             else                     /* empty sequence written */
      |             ^~~~
asndebin.c:636:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  636 |       while (atp2 != NULL)
      |       ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnenbin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnenbin.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asngen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asngen.c:80:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asngen.c: In function ‘AsnFindNthPieceOfObject’:
asngen.c:540:16: warning: variable ‘aeop’ set but not used [-Wunused-but-set-variable]
  540 |   AsnExpOptPtr aeop;
      |                ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnio.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnio.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnio.c: In function ‘AsnIoWriteBlock’:
asnio.c:698:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  698 |     else                    /* use alternative write function */
      |     ^~~~
asnio.c:701:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  701 |  if (retval != bytes_to_write)
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnlex.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnlex.c:52:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnlex.c: In function ‘AsnTxtReadId’:
asnlex.c:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if ((token == END_STRUCT) && ((isa == SEQ_TYPE) || (isa == SET_TYPE)))
      |     ^~
asnlex.c:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |  if (token != IDENT)
      |  ^~
asnlex.c: In function ‘AsnTxtReadVal’:
asnlex.c:345:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  345 |             else                     /* empty sequence written */
      |             ^~~~
asnlex.c:347:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  347 |       while (atp2 != NULL)
      |       ^~~~~
At top level:
asnlex.c:1290:13: warning: ‘AsnLexWordUTF8’ defined but not used [-Wunused-function]
 1290 | static Int2 AsnLexWordUTF8 (AsnIoPtr aip)
      |             ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnlext.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnlext.c:57:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnout.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnout.c:79:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnout.c: In function ‘AsnOutput’:
asnout.c:159:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  159 |     else
      |     ^~~~
asnout.c:162:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  162 |  for (i = 0; i < 12; i++)
      |  ^~~
asnout.c:213:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  213 |         if (! loader)
      |         ^~
asnout.c:216:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  216 |   attvp = p.root_tmpvalue.next;
      |   ^~~~~
asnout.c:270:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  270 |     if (! loader)
      |     ^~
asnout.c:273:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  273 |  attp = p.root_tmptype.next;
      |  ^~~~
asnout.c:450:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  450 |     if (! loader)
      |     ^~
asnout.c:453:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  453 |  i = 1;
      |  ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnprint.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnprint.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnprint.c: In function ‘GetXMLModuleName’:
asnprint.c:102:2: warning: statement with no effect [-Wunused-value]
  102 |  for (currmod; currmod != NULL; currmod = currmod->next)
      |  ^~~
asnprint.c: In function ‘AsnPrintCloseStruct’:
asnprint.c:1774:7: warning: variable ‘isa’ set but not used [-Wunused-but-set-variable]
 1774 |  Int2 isa;
      |       ^~~
asnprint.c: In function ‘AsnPrintModuleXMLInc’:
asnprint.c:2095:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable]
 2095 |  CharPtr ptr;
      |          ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asntypes.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asntypes.c:111:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asntypes.c: In function ‘AsnEnumTypeStr’:
asntypes.c:1383:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1383 |     if ((atp->type->isa != ENUM_TYPE) && (atp->type->isa != INTEGER_TYPE))
      |     ^~
asntypes.c:1386:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1386 |  avnp = (AsnValxNodePtr) atp->branch;
      |  ^~~~
asntypes.c: In function ‘AsnTreeLoad’:
asntypes.c:1274:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1274 |     fscanf(fp, "%d %d %d", &numval, &numtype, &nummod);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1288:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1288 |         fscanf(fp, "%d %s %ld %lf %d", &isa, name, &intvalue, &realvalue, &next);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1301:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1301 |         fscanf(fp, "%d %s %d %d %d %d %d %d %d %d %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1302 |             &isa, name, &tagclass, &tagnumber, bools, bools+1, bools+2,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1303 |             bools+3, bools+4, &defaultvalue, &type, &branch, &next);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1333:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1333 |         fscanf(fp, "%s %s %d %d", name, fname, &type, &next);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asngenob.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asngenob.c:72:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gifgen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gifgen.c:137:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from gifgen.c:137:
gifgen.c: In function ‘gdImageSetClip’:
../include/ncbimem.h:194:21: warning: ‘__builtin_memcmp_eq’ reading 16 bytes from a region of size 4 [-Wstringop-overflow=]
  194 | #define Nlm_MemCmp  memcmp
../include/ncbimem.h:213:17: note: in expansion of macro ‘Nlm_MemCmp’
  213 | #define MemCmp  Nlm_MemCmp
      |                 ^~~~~~~~~~
gifgen.c:1850:17: note: in expansion of macro ‘MemCmp’
 1850 |   if (clip  &&  MemCmp(&clip, &empty_clip, sizeof(gdRect))) {
      |                 ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF togif.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from togif.c:111:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
togif.c: In function ‘gdImageCreateFromGif’:
togif.c:961:12: warning: variable ‘AspectRatio’ set but not used [-Wunused-but-set-variable]
  961 |        int AspectRatio;
      |            ^~~~~~~~~~~
togif.c:960:12: warning: variable ‘Background’ set but not used [-Wunused-but-set-variable]
  960 |        int Background;
      |            ^~~~~~~~~~
togif.c:959:12: warning: variable ‘ColorResolution’ set but not used [-Wunused-but-set-variable]
  959 |        int ColorResolution;
      |            ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbithrs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ncbithrs.c:289:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbithrs.c: In function ‘s_TlsDestroyAll’:
ncbithrs.c:2529:11: warning: unused variable ‘err_code’ [-Wunused-variable]
 2529 |       int err_code = 0;
      |           ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
regex.c: In function ‘re_match_2’:
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3768 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3915 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3968 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:4071:25: warning: variable ‘sdummy’ set but not used [-Wunused-but-set-variable]
 4071 |             const char *sdummy;
      |                         ^~~~~~
regex.c:4070:28: warning: variable ‘pdummy’ set but not used [-Wunused-but-set-variable]
 4070 |             unsigned char *pdummy;
      |                            ^~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4107 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4120 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tsprintf.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbiargs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbiargs.c:82:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tree.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from tree.c:79:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/matrix.h:44,
                 from matrix.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_socket.c:75:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_socket.c: In function ‘s_GetLocalPort’:
ncbi_socket.c:440:50: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
  440 |     if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0
      |                                                  ^~~~~~~
      |                                                  |
      |                                                  TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_IsConnected_’:
ncbi_socket.c:2572:73: warning: pointer targets in passing argument 5 of ‘getsockopt’ differ in signedness [-Wpointer-sign]
 2572 |         if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len)
      |                                                                         ^~~~
      |                                                                         |
      |                                                                         TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:210:32: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  210 |          socklen_t *__restrict __optlen) __THROW;
      |          ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
ncbi_socket.c: In function ‘s_CreateOnTop’:
ncbi_socket.c:4435:35: warning: pointer targets in passing argument 3 of ‘getpeername’ differ in signedness [-Wpointer-sign]
 4435 |     if (getpeername(fd, &peer.sa, &peerlen) != 0) {
      |                                   ^~~~~~~~
      |                                   |
      |                                   TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:131:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  131 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c:4471:43: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 4471 |             if (getsockname(fd, &peer.sa, &peerlen) != 0)
      |                                           ^~~~~~~~
      |                                           |
      |                                           TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_CreateListening’:
ncbi_socket.c:4865:48: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 4865 |         error = getsockname(x_lsock, &addr.sa, &addrlen) != 0
      |                                                ^~~~~~~~
      |                                                |
      |                                                TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_Accept’:
ncbi_socket.c:5105:49: warning: pointer targets in passing argument 3 of ‘accept’ differ in signedness [-Wpointer-sign]
 5105 |     if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) {
      |                                                 ^~~~~~~~
      |                                                 |
      |                                                 TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:233:28: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  233 |      socklen_t *__restrict __addr_len);
      |      ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
ncbi_socket.c: In function ‘s_RecvMsg’:
ncbi_socket.c:5409:52: warning: pointer targets in passing argument 6 of ‘recvfrom’ differ in signedness [-Wpointer-sign]
 5409 |                           (struct sockaddr*) &sin, &sinlen);
      |                                                    ^~~~~~~
      |                                                    |
      |                                                    TSOCK_socklen_t * {aka int *}
In file included from /usr/i686-linux-gnu/include/sys/socket.h:269,
                 from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/bits/socket2.h:65:49: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
   65 |    __SOCKADDR_ARG __addr, socklen_t *__restrict __addr_len)
      |                           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
ncbi_socket.c: In function ‘TRIGGER_Create’:
ncbi_socket.c:5661:18: warning: unused variable ‘x_id’ [-Wunused-variable]
 5661 |     unsigned int x_id = ++s_ID_Counter;
      |                  ^~~~
ncbi_socket.c: In function ‘DSOCK_Bind’:
ncbi_socket.c:7390:51: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 7390 |         error = getsockname(sock->sock, &addr.sa, &addrlen) != 0
      |                                                   ^~~~~~~~
      |                                                   |
      |                                                   TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/i686-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_buffer.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_types.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_core.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_core.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_core_c.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_util.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_util.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_priv.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ansi_ext.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_connection.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_connector.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_connutil.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_file_connector.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_heapmgr.c:115:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_http_connector.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_http_connector.c: In function ‘x_Authenticate’:
ncbi_http_connector.c:220:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
  220 |     s[userlen++] = ':';
      |     ~~~~~~~~~~~~~^~~~~
ncbi_http_connector.c:174:10: note: at offset -1 to object ‘buf’ with size 336 declared here
  174 |     char buf[80+sizeof(uuu->net_info->user)*4], *s;
      |          ^~~
ncbi_http_connector.c:220:18: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
  220 |     s[userlen++] = ':';
      |     ~~~~~~~~~~~~~^~~~~
ncbi_http_connector.c:174:10: note: at offset -1 to object ‘buf’ with size 336 declared here
  174 |     char buf[80+sizeof(uuu->net_info->user)*4], *s;
      |          ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_server_info.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_service.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_service.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_version.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_version.h:37,
                 from ncbi_version.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_service_connector.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ftp_connector.c:49:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_dispd.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_local.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_local.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_socket_connector.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urlquery.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from urlquery.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF binary.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/binary.h:60,
                 from binary.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_sendmail.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn_connection.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lbos.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_lbos.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’:
ncbi_lbos.c:756:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  756 |     if (s_LBOS_Lbosresolver == NULL)
      |     ^~
ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  759 |         s_LBOS_Lbosresolver = strdup(str + 7);
      |         ^~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF parson.c
parson.c: In function ‘remove_comments’:
parson.c:281:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  281 |             for (i = 0; i < (ptr - string) + end_token_len; i++)
      |             ^~~
parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  283 |            string = ptr + end_token_len - 1;
      |            ^~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from parson.c:32:
In function ‘strncpy’,
    inlined from ‘parson_strndup’ at parson.c:135:5,
    inlined from ‘parson_strdup’ at parson.c:140:12,
    inlined from ‘x_json_parse_string_with_comments’ at parson.c:913:27:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
parson.c: In function ‘x_json_parse_string_with_comments’:
parson.c:140:12: note: length computed here
  140 |     return parson_strndup(string, strlen(string));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from parson.c:32:
In function ‘strncpy’,
    inlined from ‘parson_strndup’ at parson.c:135:5,
    inlined from ‘x_json_value_init_string’ at parson.c:1104:12:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
parson.c: In function ‘x_json_value_init_string’:
parson.c:1101:18: note: length computed here
 1101 |     string_len = strlen(string);
      |                  ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ipv6.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ipv6.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnflpt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnflpt.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnfspc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnfspc.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnmfls.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnmfls.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rm -f libncbi.a
ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o ncbi_lbos.o parson.o ncbi_ipv6.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbi.a ../lib
ranlib ../lib/libncbi.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -DHAVE_LIBGNUTLS ncbi_gnutls.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_gnutls.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_gnutls.c: In function ‘s_GnuTlsCreate’:
ncbi_gnutls.c:293:5: warning: ‘gnutls_connection_end_t’ is deprecated [-Wdeprecated-declarations]
  293 |     gnutls_connection_end_t end = (side == eSOCK_Client
      |     ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ncbi_gnutls.c:35:
ncbi_gnutls.c: In function ‘s_GnuTlsInit’:
ncbi_priv.h:217:33: warning: ‘version’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  217 |             _mess.message     = NcbiMessagePlusError(&_mess.dynamic,    \
      |                                 ^~~~~~~~~~~~~~~~~~~~
ncbi_gnutls.c:582:17: note: ‘version’ was declared here
  582 |     const char* version;
      |                 ^~~~~~~
rm -f libconnssl.a
ar cru libconnssl.a ncbi_gnutls.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libconnssl.a ../lib
ranlib ../lib/libconnssl.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objacces.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnacces.h:9,
                 from objacces.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objacces.c: In function ‘LinkSetAsnWrite’:
objacces.c:140:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  140 |     if (atp == NULL)
      |     ^~
objacces.c:143:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  143 |  if (lsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objacces.c: In function ‘LinkSetAsnRead’:
objacces.c:216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  216 |     if (atp == NULL)
      |     ^~
objacces.c:219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  219 |  lsp = LinkSetNew();
      |  ^~~
objacces.c:220:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  220 |     if (lsp == NULL)
      |     ^~
objacces.c:223:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  223 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objacces.c:226:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  226 |     if (atp == NULL)
      |     ^~
objacces.c:228:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  228 |  if (AsnReadVal(aip, atp, &av) <= 0)     /* get the num */
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objalign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objalign.h:103,
                 from objalign.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objalign.c: In function ‘CommonSeqAlignLabelFunc’:
objalign.c:135:27: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
  135 |  CharPtr curr, typelabel, tmp;
      |                           ^~~
objalign.c: In function ‘SeqAlignAsnRead’:
objalign.c:597:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  597 |     if (atp == NULL)
      |     ^~
objalign.c:600:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  600 |  sap = SeqAlignNew();
      |  ^~~
objalign.c:601:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  601 |     if (sap == NULL)
      |     ^~
objalign.c:604:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  604 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘DenseDiagAsnWrite’:
objalign.c:1020:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1020 |     if (atp == NULL)
      |     ^~
objalign.c:1023:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1023 |  if (ddp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c: In function ‘DenseDiagAsnRead’:
objalign.c:1112:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1112 |     if (atp == NULL)
      |     ^~
objalign.c:1115:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1115 |  ddp = DenseDiagNew();
      |  ^~~
objalign.c:1116:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1116 |     if (ddp == NULL)
      |     ^~
objalign.c:1119:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1119 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘DenseSegAsnWrite’:
objalign.c:1268:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1268 |     if (atp == NULL)
      |     ^~
objalign.c:1271:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1271 |  if (dsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c: In function ‘DenseSegAsnRead’:
objalign.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1374 |     if (atp == NULL)
      |     ^~
objalign.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1377 |  dsp = DenseSegNew();
      |  ^~~
objalign.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1378 |     if (dsp == NULL)
      |     ^~
objalign.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1381 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘StdSegAsnWrite’:
objalign.c:1559:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1559 |     if (atp == NULL)
      |     ^~
objalign.c:1562:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1562 |  if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c:1581:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1581 |     if (! SeqLocSetAsnWrite(ssp->loc, aip, STD_SEG_loc, STD_SEG_loc_E))
      |     ^~
objalign.c:1584:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1584 |  if (ssp->scores != NULL)
      |  ^~
objalign.c: In function ‘StdSegAsnRead’:
objalign.c:1626:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1626 |     if (atp == NULL)
      |     ^~
objalign.c:1629:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1629 |  ssp = StdSegNew();
      |  ^~~
objalign.c:1630:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1630 |     if (ssp == NULL)
      |     ^~
objalign.c:1633:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1633 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘SeqAlignSetAsnWrite’:
objalign.c:1704:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1704 |     if (atp == NULL)
      |     ^~
objalign.c:1708:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1708 |  oldsap = sap;
      |  ^~~~~~
objalign.c: In function ‘PackSegAsnWrite’:
objalign.c:1892:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1892 |     if (atp == NULL)
      |     ^~
objalign.c:1895:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1895 |  if (psp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c:1926:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1926 |     if (! AsnCloseStruct(aip, PACKED_SEG_starts, (Pointer)psp->starts))
      |     ^~
objalign.c:1929:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1929 |  av.ptrvalue = psp->present;
      |  ^~
objalign.c: In function ‘PackSegAsnRead’:
objalign.c:1999:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1999 |     if (atp == NULL)
      |     ^~
objalign.c:2002:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2002 |  psp = PackSegNew();
      |  ^~~
objalign.c:2003:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2003 |     if (psp == NULL)
      |     ^~
objalign.c:2006:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2006 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘SplicedSegAsnRead’:
objalign.c:2179:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2179 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseSegAsnRead’:
objalign.c:2422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2422 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedExonAsnRead’:
objalign.c:2614:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2614 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedSegModifierFree’:
objalign.c:2875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2875 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘ProductPosFree’:
objalign.c:3050:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3050 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘SplicedExonChunkFree’:
objalign.c:3225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3225 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘SpliceSiteAsnRead’:
objalign.c:3469:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3469 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘ProtPosAsnRead’:
objalign.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3626 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseAlignAsnRead’:
objalign.c:3798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3798 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseSegExtAsnRead’:
objalign.c:4020:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4020 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedSegModifierAsnRead’:
objalign.c:2955:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2955 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalign.c: In function ‘SplicedExonChunkAsnRead’:
objalign.c:3326:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3326 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalign.c: In function ‘ProductPosAsnRead’:
objalign.c:3130:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3130 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objall.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objall.h:64,
                 from objall.c:63:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objbibli.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnbibli.h:9,
                 from objbibli.c:113:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objbibli.c: In function ‘AffilAsnRead’:
objbibli.c:208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  208 |     if (atp == NULL)
      |     ^~
objbibli.c:211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  211 |  afp = AffilNew();
      |  ^~~
objbibli.c: In function ‘AffilAsnWrite’:
objbibli.c:296:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  296 |     if (atp == NULL)
      |     ^~
objbibli.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  299 |  if (afp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘AuthListFree’:
objbibli.c:458:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  458 |     if (alp->affil != NULL)
      |     ^~
objbibli.c:460:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  460 |  return (AuthListPtr)MemFree(alp);
      |  ^~~~~~
objbibli.c: In function ‘AuthListAsnRead’:
objbibli.c:489:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  489 |     if (atp == NULL)
      |     ^~
objbibli.c:492:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  492 |  alp = AuthListNew();
      |  ^~~
objbibli.c: In function ‘AuthListAsnWrite’:
objbibli.c:583:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  583 |     if (atp == NULL)
      |     ^~
objbibli.c:586:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  586 |  if (alp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:590:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  590 |     if (! AsnOpenStruct(aip, atp, (Pointer)alp))   /* open AuthList SEQUENCE */
      |     ^~
objbibli.c:593:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  593 |  av.ptrvalue = alp->names;
      |  ^~
objbibli.c: In function ‘AuthorFree’:
objbibli.c:677:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  677 |     if (ap->affil != NULL)
      |     ^~
objbibli.c:679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  679 |  return (AuthorPtr)MemFree(ap);
      |  ^~~~~~
objbibli.c: In function ‘AuthorAsnRead’:
objbibli.c:707:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  707 |     if (atp == NULL)
      |     ^~
objbibli.c:710:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  710 |  ap = AuthorNew();
      |  ^~
objbibli.c: In function ‘AuthorAsnWrite’:
objbibli.c:779:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  779 |     if (atp == NULL)
      |     ^~
objbibli.c:782:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  782 |  if (ap == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitArtAsnRead’:
objbibli.c:925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  925 |     if (atp == NULL)
      |     ^~
objbibli.c:928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  928 |  cap = CitArtNew();
      |  ^~~
objbibli.c: In function ‘CitArtAsnWrite’:
objbibli.c:1027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1027 |     if (atp == NULL)
      |     ^~
objbibli.c:1030:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1030 |  if (cap == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1034:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1034 |     if (! AsnOpenStruct(aip, atp, (Pointer)cap))  /* open the SEQUENCE */
      |     ^~
objbibli.c:1037:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1037 |  if (cap->title != NULL)
      |  ^~
objbibli.c: In function ‘ImprintAsnRead’:
objbibli.c:1152:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1152 |     if (atp == NULL)
      |     ^~
objbibli.c:1155:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1155 |  ip = ImprintNew();
      |  ^~
objbibli.c: In function ‘ImprintAsnWrite’:
objbibli.c:1251:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1251 |     if (atp == NULL)
      |     ^~
objbibli.c:1254:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1254 |  if (ip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitRetractAsnRead’:
objbibli.c:1391:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1391 |     if (atp == NULL)
      |     ^~
objbibli.c:1394:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1394 |  crp = CitRetractNew();
      |  ^~~
objbibli.c: In function ‘CitRetractAsnWrite’:
objbibli.c:1445:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1445 |     if (atp == NULL)
      |     ^~
objbibli.c:1448:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1448 |  if (crp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitJourAsnRead’:
objbibli.c:1524:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1524 |     if (atp == NULL)
      |     ^~
objbibli.c:1527:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1527 |  cjp = CitJourNew();
      |  ^~~
objbibli.c: In function ‘CitJourAsnWrite’:
objbibli.c:1576:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1576 |     if (atp == NULL)
      |     ^~
objbibli.c:1579:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1579 |  if (cjp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1585:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1585 |     if (! ImprintAsnWrite(cjp->imp, aip, CIT_JOUR_imp))
      |     ^~
objbibli.c:1587:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1587 |     if (! AsnCloseStruct(aip, atp, (Pointer)cjp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitBookAsnRead’:
objbibli.c:1676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1676 |     if (atp == NULL)
      |     ^~
objbibli.c:1679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1679 |  cbp = CitBookNew();
      |  ^~~
objbibli.c: In function ‘CitBookAsnWrite’:
objbibli.c:1744:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1744 |     if (atp == NULL)
      |     ^~
objbibli.c:1747:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1747 |  if (cbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1760:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1760 |     if (! ImprintAsnWrite(cbp->imp, aip, CIT_BOOK_imp))
      |     ^~
objbibli.c:1762:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1762 |     if (! AsnCloseStruct(aip, atp, (Pointer)cbp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitProcAsnWrite’:
objbibli.c:1879:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1879 |     if (atp == NULL)
      |     ^~
objbibli.c:1882:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1882 |  if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1901 |     if (! AsnCloseStruct(aip, CIT_PROC_meet, (Pointer)cpp->otherdata))
      |     ^~
objbibli.c:1903:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1903 |     if (! AsnCloseStruct(aip, atp, (Pointer)cpp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitLetAsnWrite’:
objbibli.c:1995:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1995 |     if (atp == NULL)
      |     ^~
objbibli.c:1998:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1998 |  if (clp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitPatAsnRead’:
objbibli.c:2091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2091 |     if (atp == NULL)
      |     ^~
objbibli.c:2094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2094 |  cpp = CitPatNew();
      |  ^~~
objbibli.c: In function ‘CitPatAsnWrite’:
objbibli.c:2213:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2213 |     if (atp == NULL)
      |     ^~
objbibli.c:2216:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2216 |  if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘IdPatAsnRead’:
objbibli.c:2346:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2346 |     if (atp == NULL)
      |     ^~
objbibli.c:2349:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2349 |  idp = IdPatNew();
      |  ^~~
objbibli.c: In function ‘IdPatAsnWrite’:
objbibli.c:2412:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2412 |     if (atp == NULL)
      |     ^~
objbibli.c:2415:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2415 |  if (idp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitGenAsnRead’:
objbibli.c:2546:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2546 |     if (atp == NULL)
      |     ^~
objbibli.c:2549:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2549 |  cgp = CitGenNew();
      |  ^~~
objbibli.c: In function ‘CitGenAsnWrite’:
objbibli.c:2627:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2627 |     if (atp == NULL)
      |     ^~
objbibli.c:2630:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2630 |  if (cgp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘TitleAsnWrite’:
objbibli.c:2825:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2825 |     if (atp == NULL)
      |     ^~
objbibli.c:2828:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2828 |  if (tp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitSubFree’:
objbibli.c:2909:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2909 |     if (csp == NULL)
      |     ^~
objbibli.c:2912:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2912 |  AuthListFree(csp->authors);
      |  ^~~~~~~~~~~~
objbibli.c: In function ‘CitSubAsnRead’:
objbibli.c:2943:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2943 |     if (atp == NULL)
      |     ^~
objbibli.c:2946:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2946 |  csp = CitSubNew();
      |  ^~~
objbibli.c:2958:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2958 |     if (atp == NULL)
      |     ^~
objbibli.c:2961:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2961 |  if (atp == CIT_SUB_imp)
      |  ^~
objbibli.c: In function ‘CitSubAsnWrite’:
objbibli.c:3029:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3029 |     if (atp == NULL)
      |     ^~
objbibli.c:3032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3032 |  if (csp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:3038:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3038 |     if (! AuthListAsnWrite(csp->authors, aip, CIT_SUB_authors))
      |     ^~
objbibli.c:3041:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3041 |  if (csp->imp != NULL)
      |  ^~
objbibli.c: In function ‘PatPrioritySetAsnRead’:
objbibli.c:3694:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3694 |      if (ppp == NULL)
      |      ^~
objbibli.c:3697:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3697 |   if (head == NULL)
      |   ^~
objbibli.c:3715:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3715 |      if (atp == NULL)
      |      ^~
objbibli.c:3717:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3717 |   ppp->date = DateAsnRead(aip, atp);
      |   ^~~
objbibli.c: In function ‘PatPrioritySetAsnWrite’:
objbibli.c:3755:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3755 |     if (! AsnOpenStruct(aip, set, (Pointer)ppp))  /* open the SEQUENCE OF */
      |     ^~
objbibli.c:3758:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3758 |  for (tmp = ppp; tmp != NULL; tmp = tmp->next)
      |  ^~~
objbibli.c: In function ‘ArticleIdAsnRead’:
objbibli.c:3849:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3849 |     if (atp == NULL)
      |     ^~
objbibli.c:3852:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3852 |  aidp = ArticleIdNew();
      |  ^~~~
objbibli.c: In function ‘ArticleIdAsnWrite’:
objbibli.c:3925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3925 |     if (atp == NULL)
      |     ^~
objbibli.c:3928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3928 |  if (aidp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘PubStatusDateAsnRead’:
objbibli.c:4039:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4039 |     if (atp == NULL)
      |     ^~
objbibli.c:4042:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4042 |  psdp = PubStatusDateNew();
      |  ^~~~
objbibli.c: In function ‘PubStatusDateAsnWrite’:
objbibli.c:4091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4091 |     if (atp == NULL)
      |     ^~
objbibli.c:4094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4094 |  if (psdp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objfeat.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objfeat.h:48,
                 from objfeat.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objfeat.c: In function ‘ModelEvidenceSupportAsnRead’:
objfeat.c:1500:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1500 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ExperimentSupportAsnRead’:
objfeat.c:1748:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1748 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ProgramIdAsnRead’:
objfeat.c:1933:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1933 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘EvidenceBasisAsnRead’:
objfeat.c:2103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2103 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘InferenceSupportAsnRead’:
objfeat.c:2267:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2267 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ModelEvidenceItemAsnRead’:
objfeat.c:2483:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2483 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SeqFeatSupportAsnRead’:
objfeat.c:2688:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2688 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAQualAsnRead’:
objfeat.c:4244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4244 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAQualSetAsnRead’:
objfeat.c:4396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4396 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAGenAsnRead’:
objfeat.c:4524:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4524 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘GeneNomenclatureAsnRead’:
objfeat.c:4707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4707 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘OrgNameMatch’:
objfeat.c:5957:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
 5957 |            || onp2->mgcode != onp2->mgcode
      |                            ^~
objfeat.c: In function ‘TaxElementAsnWrite’:
objfeat.c:7399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 7399 |     if (! AsnOpenStruct(aip, atp, (Pointer)tep))
      |     ^~
objfeat.c:7402:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 7402 |         av.intvalue = (Int4)(tep->fixed_level);
      |         ^~
objfeat.c: In function ‘PCRPrimerAsnRead’:
objfeat.c:8276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8276 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRPrimerSetAsnRead’:
objfeat.c:8421:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8421 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRReactionAsnRead’:
objfeat.c:8542:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8542 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRReactionSetAsnRead’:
objfeat.c:8685:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8685 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneRefAsnRead’:
objfeat.c:8812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8812 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneSeqSetAsnRead’:
objfeat.c:9005:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9005 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneSeqAsnRead’:
objfeat.c:9135:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9135 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SomaticOriginAsnRead’:
objfeat.c:9487:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9487 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SomaticOriginConditionAsnRead’:
objfeat.c:9566:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9566 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘VariationRefAsnRead’:
objfeat.c:9645:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9645 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_loss_of_heterozygosityAsnRead’:
objfeat.c:10687:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10687 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_frameshiftAsnRead’:
objfeat.c:10765:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10765 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘VarRefDataFree’:
objfeat.c:10865:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
10865 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘VarRefDataSetAsnRead’:
objfeat.c:10918:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10918 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_elementFree’:
objfeat.c:11112:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
11112 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘VariationInstAsnRead’:
objfeat.c:11241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11241 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: At top level:
objfeat.c:11393:1: warning: "/*" within comment [-Wcomment]
11393 | /**************************************************
      |  
objfeat.c: In function ‘VariantPropertiesAsnRead’:
objfeat.c:11422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11422 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PhenotypeAsnRead’:
objfeat.c:11746:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11746 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PopulationDataAsnRead’:
objfeat.c:11945:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11945 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ExtLocAsnRead’:
objfeat.c:12161:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12161 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Seq_seqFree’:
objfeat.c:12327:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12327 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘DeltaItemAsnRead’:
objfeat.c:12360:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12360 |    AsnReadFunc func;
      |                ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objgen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asngen.h:9,
                 from objgen.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objgen.c: In function ‘DateClean’:
objgen.c:161:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  161 |     if (dp == NULL)
      |     ^~
objgen.c:164:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  164 |  memset(dp, 0, sizeof(NCBI_Date));
      |  ^~~~~~
objgen.c: In function ‘DateAsnWrite’:
objgen.c:399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  399 |     if (atp == NULL)
      |     ^~
objgen.c:402:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  402 |  if (dp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘DateAsnRead’:
objgen.c:494:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  494 |     if (atp == NULL)
      |     ^~
objgen.c:497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  497 |  dp = DateNew();
      |  ^~
objgen.c:498:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  498 |     if (dp == NULL)
      |     ^~
objgen.c:501:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  501 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE value (nothing) */
      |  ^~
objgen.c: In function ‘DbtagFree’:
objgen.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  752 |     if (dbt == NULL)
      |     ^~
objgen.c:755:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  755 |  dbt->tag = ObjectIdFree(dbt->tag);
      |  ^~~
objgen.c: In function ‘DbtagAsnRead’:
objgen.c:784:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  784 |     if (atp == NULL)
      |     ^~
objgen.c:787:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  787 |  dbt = DbtagNew();
      |  ^~~
objgen.c:788:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  788 |     if (dbt == NULL)
      |     ^~
objgen.c:791:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  791 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the START_STRUCT */
      |  ^~
objgen.c:799:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  799 |     if (dbt->tag == NULL)
      |     ^~
objgen.c:802:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  802 |  atp = AsnReadId(aip, amp, atp); if (atp == NULL) goto erret;   /* END_STRUCT */
      |  ^~~
objgen.c: In function ‘DbtagAsnWrite’:
objgen.c:833:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  833 |     if (atp == NULL)
      |     ^~
objgen.c:836:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  836 |  if (dbt == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘ObjectIdAsnRead’:
objgen.c:980:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  980 |     if (atp == NULL)
      |     ^~
objgen.c:983:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  983 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE value (nothing) */
      |  ^~
objgen.c:989:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  989 |     if (oid == NULL)
      |     ^~
objgen.c:991:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  991 |  if (atp == OBJECT_ID_id)
      |  ^~
objgen.c: In function ‘ObjectIdAsnWrite’:
objgen.c:1024:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1024 |     if (atp == NULL)
      |     ^~
objgen.c:1027:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1027 |  if (oid == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘NameStdFree’:
objgen.c:1174:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1174 |     if (nsp == NULL)
      |     ^~
objgen.c:1177:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1177 |  for (i = 0; i < 7; i++)
      |  ^~~
objgen.c: In function ‘NameStdAsnRead’:
objgen.c:1208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1208 |     if (atp == NULL)
      |     ^~
objgen.c:1211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1211 |  nsp = NameStdNew();
      |  ^~~
objgen.c:1212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1212 |     if (nsp == NULL)
      |     ^~
objgen.c:1215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1215 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the START_STRUCT */
      |  ^~
objgen.c: In function ‘NameStdAsnWrite’:
objgen.c:1271:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1271 |     if (atp == NULL)
      |     ^~
objgen.c:1274:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1274 |  if (nsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘PersonIdFree’:
objgen.c:1368:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1368 |     if (pid == NULL)
      |     ^~
objgen.c:1371:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1371 |  if (pid->choice == 1)          /* Dbtag */
      |  ^~
objgen.c: In function ‘PersonIdAsnWrite’:
objgen.c:1464:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1464 |     if (atp == NULL)
      |     ^~
objgen.c:1467:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1467 |  if (pid == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘IntFuzzAsnRead’:
objgen.c:1682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1682 |     if (atp == NULL)
      |     ^~
objgen.c:1685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1685 |  ifp = IntFuzzNew();
      |  ^~~
objgen.c:1686:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1686 |     if (ifp == NULL)
      |     ^~
objgen.c:1689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1689 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE (nothing) */
      |  ^~
objgen.c: In function ‘UserFieldAsnRead’:
objgen.c:1944:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1944 |     if (atp == NULL)
      |     ^~
objgen.c:1947:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1947 |  ufp = UserFieldNew();
      |  ^~~
objgen.c: In function ‘UserObjectAsnRead’:
objgen.c:2434:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2434 |     if (atp == NULL)
      |     ^~
objgen.c:2437:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2437 |  uop = UserObjectNew();
      |  ^~~
objgen.c:2438:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2438 |     if (uop == NULL)
      |     ^~
objgen.c:2441:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2441 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objloc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from objloc.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objloc.c: In function ‘SeqIdAsnWrite’:
objloc.c:313:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  313 |     if (atp == NULL)
      |     ^~
objloc.c:316:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  316 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqIdAsnRead’:
objloc.c:443:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  443 |     if (atp == NULL)
      |     ^~
objloc.c:446:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  446 |  anp = ValNodeNew(NULL);
      |  ^~~
objloc.c: In function ‘SeqIdDup’:
objloc.c:587:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  587 |     if (oldid == NULL)
      |     ^~
objloc.c:590:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  590 |  newid = ValNodeNew(NULL);
      |  ^~~~~
objloc.c: In function ‘SeqIdSetAsnRead’:
objloc.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  752 |     if (AsnReadVal(aip, atp, &av) <= 0)    /* end struct */
      |     ^~
objloc.c:754:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  754 |  if (first == NULL)
      |  ^~
objloc.c: In function ‘SeqIdSetAsnWrite’:
objloc.c:786:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  786 |     if (atp2 == NULL)
      |     ^~
objloc.c:789:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  789 |  if (anp == NULL) { AsnNullValueMsg(aip, settype); goto erret; }
      |  ^~
objloc.c: In function ‘TextSeqIdAsnWrite’:
objloc.c:864:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  864 |     if (atp == NULL)
      |     ^~
objloc.c:867:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  867 |  if (tsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘TextSeqIdAsnRead’:
objloc.c:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (atp == NULL)
      |     ^~
objloc.c:937:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  937 |  tsip = TextSeqIdNew();
      |  ^~~~
objloc.c:938:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  938 |     if (tsip == NULL)
      |     ^~
objloc.c:941:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  941 |  if ((AsnReadVal(aip, oldtype, &av)) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PatentSeqIdAsnWrite’:
objloc.c:1018:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1018 |     if (atp == NULL)
      |     ^~
objloc.c:1021:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1021 |  if (psip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PatentSeqIdAsnRead’:
objloc.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1068 |     if (atp == NULL)
      |     ^~
objloc.c:1071:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1071 |  psip = PatentSeqIdNew();
      |  ^~~~
objloc.c:1072:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1072 |     if (psip == NULL)
      |     ^~
objloc.c:1075:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1075 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘GiimAsnWrite’:
objloc.c:1151:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1151 |     if (atp == NULL)
      |     ^~
objloc.c:1154:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1154 |  if (gip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘GiimAsnRead’:
objloc.c:1216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1216 |     if (gip == NULL)
      |     ^~
objloc.c:1219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1219 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PDBSeqIdAsnWrite’:
objloc.c:1305:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1305 |     if (atp == NULL)
      |     ^~
objloc.c:1308:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1308 |  if (pdbsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PDBSeqIdAsnRead’:
objloc.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1374 |     if (atp == NULL)
      |     ^~
objloc.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1377 |  pdbsip = PDBSeqIdNew();
      |  ^~~~~~
objloc.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1378 |     if (pdbsip == NULL)
      |     ^~
objloc.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1381 |  if ((AsnReadVal(aip, oldtype, &av)) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘SeqLocAsnWrite’:
objloc.c:1528:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1528 |     if (atp == NULL)
      |     ^~
objloc.c:1531:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1531 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocAsnRead’:
objloc.c:1624:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1624 |     if (atp == NULL)
      |     ^~
objloc.c:1627:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1627 |  anp = ValNodeNew(NULL);
      |  ^~~
objloc.c:1628:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1628 |     if (anp == NULL)
      |     ^~
objloc.c:1631:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1631 |  if (AsnReadVal(aip, atp, &av) <= 0)  /* read the CHOICE value (nothing) */
      |  ^~
objloc.c: In function ‘SeqLocMixAsnWrite’:
objloc.c:1738:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1738 |     if (atp == NULL)
      |     ^~
objloc.c:1741:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1741 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocEquivAsnWrite’:
objloc.c:1805:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1805 |     if (atp == NULL)
      |     ^~
objloc.c:1808:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1808 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocSetAsnWrite’:
objloc.c:1873:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1873 |     if (atp2 == NULL)
      |     ^~
objloc.c:1876:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1876 |  if (anp == NULL) { AsnNullValueMsg(aip, set); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocSetAsnRead’:
objloc.c:1940:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1940 |     if (AsnReadVal(aip, atp, &av) <= 0)      /* read END_STRUCT */
      |     ^~
objloc.c:1942:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1942 |  if (first == NULL)
      |  ^~
objloc.c: In function ‘SeqIntAsnWrite’:
objloc.c:2022:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2022 |     if (atp == NULL)
      |     ^~
objloc.c:2025:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2025 |  if (sip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqIntAsnRead’:
objloc.c:2095:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2095 |     if (atp == NULL)
      |     ^~
objloc.c:2098:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2098 |  sip = SeqIntNew();
      |  ^~~
objloc.c:2099:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2099 |     if (sip == NULL)
      |     ^~
objloc.c:2102:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2102 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PackSeqIntAsnWrite’:
objloc.c:2179:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2179 |     if (atp == NULL)
      |     ^~
objloc.c:2181:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2181 |  oldsip = sip;
      |  ^~~~~~
objloc.c:2185:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2185 |     if (! AsnOpenStruct(aip, atp, (Pointer)oldsip))
      |     ^~
objloc.c:2187:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2187 |  for ( ;sip != NULL; sip = sip->next)
      |  ^~~
objloc.c: In function ‘SeqPntAsnWrite’:
objloc.c:2309:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2309 |     if (atp == NULL)
      |     ^~
objloc.c:2312:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2312 |  if (spp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqPntAsnRead’:
objloc.c:2374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2374 |     if (atp == NULL)
      |     ^~
objloc.c:2377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2377 |  spp = SeqPntNew();
      |  ^~~
objloc.c:2378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2378 |     if (spp == NULL)
      |     ^~
objloc.c:2381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2381 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PackSeqPntAsnWrite’:
objloc.c:2479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2479 |     if (atp == NULL)
      |     ^~
objloc.c:2482:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2482 |  if (pspp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PackSeqPntAsnRead’:
objloc.c:2553:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2553 |     if (atp == NULL)
      |     ^~
objloc.c:2556:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2556 |  pspp = PackSeqPntNew();
      |  ^~~~
objloc.c:2557:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2557 |     if (pspp == NULL)
      |     ^~
objloc.c:2560:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2560 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘SeqBondAsnWrite’:
objloc.c:2724:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2724 |     if (atp == NULL)
      |     ^~
objloc.c:2727:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2727 |  if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqBondAsnRead’:
objloc.c:2776:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2776 |     if (atp == NULL)
      |     ^~
objloc.c:2779:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2779 |  sbp = SeqBondNew();
      |  ^~~
objloc.c:2780:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2780 |     if (sbp == NULL)
      |     ^~
objloc.c:2783:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2783 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmedli.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from objmedli.c:104:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmedli.c: In function ‘MedlineMeshAsnRead’:
objmedli.c:248:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  248 |     if (atp == NULL)
      |     ^~
objmedli.c:251:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  251 |  mmp = MedlineMeshNew();
      |  ^~~
objmedli.c: In function ‘DocRefFree’:
objmedli.c:1190:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1190 |     if (drp == NULL)
      |     ^~
objmedli.c:1193:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1193 |  return (DocRefPtr)MemFree(drp);
      |  ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objpub.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objpub.h:70,
                 from objpub.c:125:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objpub.c: In function ‘PubSetAsnRead’:
objpub.c:831:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  831 |     if (AsnReadVal(aip, settype, &av) <= 0)    /* read START_STRUCT */
      |     ^~
objpub.c:834:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  834 |  if (settype == PUB_SET_pub)
      |  ^~
objpub.c:901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  901 |     if (AsnReadVal(aip, settype, &av) <= 0)   /* read END_STRUCT for SET OF */
      |     ^~
objpub.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |  if (anp == NULL)
      |  ^~
objpub.c: In function ‘PubLabelUnique’:
objpub.c:1360:17: warning: unused variable ‘pmid’ [-Wunused-variable]
 1360 |  Int4 muid = 0, pmid = 0;
      |                 ^~~~
objpub.c:1360:7: warning: unused variable ‘muid’ [-Wunused-variable]
 1360 |  Int4 muid = 0, pmid = 0;
      |       ^~~~
objpub.c: In function ‘PubSetAsnRead’:
objpub.c:876:16: warning: ‘func’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  876 |         pnt = (* func)(aip, atp);
      |               ~^~~~~~~~~~~~~~~~~
objpub.c:887:25: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  887 |             cit->choice = choice;
      |             ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objres.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from objres.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objscoremat.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objscoremat.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objscoremat.c: In function ‘PssmAsnRead’:
objscoremat.c:93:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   93 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmIntermediateDataAsnRead’:
objscoremat.c:339:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  339 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmFinalDataAsnRead’:
objscoremat.c:548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  548 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmParametersAsnRead’:
objscoremat.c:766:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  766 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmWithParametersAsnRead’:
objscoremat.c:946:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  946 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘BlockPropertyAsnRead’:
objscoremat.c:1113:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1113 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘CoreBlockAsnRead’:
objscoremat.c:1289:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1289 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘LoopConstraintAsnRead’:
objscoremat.c:1480:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1480 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘CoreDefAsnRead’:
objscoremat.c:1646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1646 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘FormatRpsDbParametersAsnRead’:
objscoremat.c:1817:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1817 |    AsnReadFunc func;
      |                ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from objseq.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objseq.c: In function ‘LinkageEvidenceAsnRead’:
objseq.c:1609:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1609 |    AsnReadFunc func;
      |                ^~~~
objseq.c: In function ‘SeqGapAsnRead’:
objseq.c:1764:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1764 |    AsnReadFunc func;
      |                ^~~~
objseq.c: In function ‘SeqDescrAsnWriteExtra’:
objseq.c:2035:48: warning: variable ‘had_anp’ set but not used [-Wunused-but-set-variable]
 2035 |     Boolean retval = FALSE, had_extra = FALSE, had_anp = FALSE;
      |                                                ^~~~~~~
objseq.c: In function ‘AnnotIdAsnWrite’:
objseq.c:4841:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 4841 |         else
      |         ^~~~
objseq.c:4843:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 4843 |             break;
      |             ^~~~~
objseq.c:4849:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 4849 |         else
      |         ^~~~
objseq.c:4851:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 4851 |             break;
      |             ^~~~~
objseq.c: In function ‘AnnotDescAsnWrite’:
objseq.c:5226:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 5226 |         else
      |         ^~~~
objseq.c:5228:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 5228 |            break;
      |            ^~~~~
objseq.c: In function ‘BioseqAsnRead’:
objseq.c:977:21: warning: ‘osp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  977 |         else if (osp->load_by_id)   /* don't load it */
      |                  ~~~^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objblock.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objblock.h:70,
                 from objblock.c:74:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objblock.c: In function ‘EMBLBlockFree’:
objblock.c:900:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  900 |     if (ebp == NULL)
      |     ^~
objblock.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |  DateFree(ebp->creation_date);
      |  ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcode.c
objcode.c:48:51: warning: "/*" within comment [-Wcomment]
   48 | * environment variables to allow reading from data/*.val, replaced tabs in source code with spaces
      |                                                    
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objcode.h:64,
                 from objcode.c:105:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objsset.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from objsset.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objsset.c: In function ‘BioseqSetFree’:
objsset.c:363:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  363 |     if (bsp == NULL)
      |     ^~
objsset.c:366:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  366 |  if (bsp->idx.parentptr == NULL || bsp->idx.parenttype == OBJ_SEQSUB) {
      |  ^~
objsset.c: In function ‘SeqEntryFree’:
objsset.c:878:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     else if (sep->choice == 2)
      |          ^~
objsset.c:881:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  881 |  return (SeqEntryPtr)MemFree(sep);
      |  ^~~~~~
objsset.c: In function ‘SeqEntryFreeComponents’:
objsset.c:898:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  898 |     else if (sep->choice == 2)
      |          ^~
objsset.c:901:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  901 |  return sep;
      |  ^~~~~~
objsset.c: In function ‘SeqEntryAsnGet’:
objsset.c:1075:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1075 |     if (retcode == 1)   /* just after a Bioseq */
      |     ^~
objsset.c:1077:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1077 |  av.ptrvalue = (Pointer) osp;
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objsub.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnsubmt.h:9,
                 from objsub.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objsub.c: In function ‘SubmitAsnLoad’:
objsub.c:341:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  341 |     if (loaded)
      |     ^~
objsub.c:344:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  344 |  if (! SeqSetAsnLoad ())
      |  ^~
objsub.c:347:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  347 |     if (AsnLoad())
      |     ^~
objsub.c:350:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  350 |  ObjMgrTypeLoad(OBJ_SEQSUB, "Seq-submit", seqsubtypename, "Sequence Data Submission",
      |  ^~~~~~~~~~~~~~
objsub.c: In function ‘SeqSubmitAsnWrite’:
objsub.c:455:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  455 |     if (atp == NULL)
      |     ^~
objsub.c:458:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  458 |  if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:462:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  462 |     if (! AsnOpenStruct(aip, atp, (Pointer)ssp))
      |     ^~
objsub.c:465:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  465 |  if (! SubmitBlockAsnWrite(ssp->sub, aip, SEQ_SUBMIT_sub)) goto erret;
      |  ^~
objsub.c: In function ‘SeqSubmitAsnRead’:
objsub.c:539:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  539 |     if (atp == NULL)
      |     ^~
objsub.c:542:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  542 |  ssp = SeqSubmitNew();
      |  ^~~
objsub.c:543:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  543 |     if (ssp == NULL)
      |     ^~
objsub.c:546:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  546 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objsub.c: In function ‘SubmitBlockAsnWrite’:
objsub.c:682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  682 |     if (atp == NULL)
      |     ^~
objsub.c:685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  685 |  if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:689:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  689 |     if (! AsnOpenStruct(aip, atp, (Pointer)sbp))
      |     ^~
objsub.c:692:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  692 |  if (! ContactInfoAsnWrite(sbp->contact, aip, SUBMIT_BLOCK_contact))
      |  ^~
objsub.c: In function ‘SubmitBlockAsnRead’:
objsub.c:770:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  770 |     if (atp == NULL)
      |     ^~
objsub.c:773:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  773 |  oldatp = atp;
      |  ^~~~~~
objsub.c:775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  775 |     if (sbp == NULL)
      |     ^~
objsub.c:778:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  778 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objsub.c: In function ‘ContactInfoAsnWrite’:
objsub.c:942:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  942 |     if (atp == NULL)
      |     ^~
objsub.c:945:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  945 |  if (cip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:949:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  949 |     if (! AsnOpenStruct(aip, atp, (Pointer)cip))
      |     ^~
objsub.c:952:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  952 |  if (cip->name != NULL)
      |  ^~
objsub.c: In function ‘ContactInfoAsnRead’:
objsub.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1068 |     if (atp == NULL)
      |     ^~
objsub.c:1070:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1070 |  oldatp = atp;
      |  ^~~~~~
objsub.c:1073:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1073 |     if (cip == NULL)
      |     ^~
objsub.c:1076:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1076 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objprt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from objprt.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from objprt.c:81:
objprt.c: In function ‘PrintFormTextAsnRead’:
../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
objprt.c:1086:19: note: ‘ptr’ was declared here
 1086 |  PrintFormTextPtr ptr;
      |                   ^~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from objprt.c:81:
objprt.c: In function ‘PrintFormEnumAsnRead’:
../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
objprt.c:969:19: note: ‘ptr’ was declared here
  969 |  PrintFormEnumPtr ptr;
      |                   ^~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from objprt.c:81:
objprt.c: In function ‘UserFormatAsnRead’:
../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
objprt.c:1192:16: note: ‘ptr’ was declared here
 1192 |  UserFormatPtr ptr;
      |                ^~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from objprt.c:81:
objprt.c: In function ‘PrintFormBooleanAsnRead’:
../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
objprt.c:853:22: note: ‘ptr’ was declared here
  853 |  PrintFormBooleanPtr ptr;
      |                      ^~~
objprt.c: In function ‘PrintFormAsnRead’:
objprt.c:600:8: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  600 |  vnp = PrintFormFree(vnp);
      |        ^~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormatAsnRead’:
objprt.c:379:17: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  379 |  PrintFormatPtr ptr;
      |                 ^~~
objprt.c: In function ‘PrintTemplateAsnRead’:
objprt.c:152:14: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  152 |  MemFree(ptr -> labelfrom);
      |          ~~~~^~~~~~~~~~~~
objprt.c:206:19: note: ‘ptr’ was declared here
  206 |  PrintTemplatePtr ptr;
      |                   ^~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from objprt.c:81:
objprt.c: In function ‘PrintFormBlockAsnRead’:
../include/ncbimem.h:232:23: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
objprt.c:707:20: note: ‘ptr’ was declared here
  707 |  PrintFormBlockPtr ptr;
      |                    ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objfdef.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objfeat.h:48,
                 from ../include/objfdef.h:48,
                 from objfdef.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objalignloc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objalignloc.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objalignloc.c: In function ‘AlignLocSetAsnRead’:
objalignloc.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c: In function ‘Loc_locFree’:
objalignloc.c:196:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  196 |    Pointer pnt;
      |            ^~~
objalignloc.c: In function ‘AlignLocAsnRead’:
objalignloc.c:233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  233 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:232:12: warning: unused variable ‘isError’ [-Wunused-variable]
  232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘Loc_locAsnRead’:
objalignloc.c:313:12: warning: unused variable ‘isError’ [-Wunused-variable]
  313 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignIdFree’:
objalignloc.c:527:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  527 |    Pointer pnt;
      |            ^~~
objalignloc.c: In function ‘AlignIdAsnRead’:
objalignloc.c:559:12: warning: unused variable ‘isError’ [-Wunused-variable]
  559 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignBoxAsnRead’:
objalignloc.c:750:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  750 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:749:12: warning: unused variable ‘isError’ [-Wunused-variable]
  749 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignRowsAsnRead’:
objalignloc.c:932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  932 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:931:12: warning: unused variable ‘isError’ [-Wunused-variable]
  931 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignColumnsAsnRead’:
objalignloc.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1096 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1095 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignIdAsnRead’:
objalignloc.c:615:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  615 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalignloc.c: In function ‘AlignLocAsnRead’:
objalignloc.c:370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  370 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalignloc.c:312:10: note: ‘choice’ was declared here
  312 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtable.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtable.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtable.c: In function ‘SeqTableColumnInfoAsnRead’:
objtable.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objtable.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableColumnAsnRead’:
objtable.c:269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  269 |    AsnReadFunc func;
      |                ^~~~
objtable.c:268:12: warning: unused variable ‘isError’ [-Wunused-variable]
  268 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableAsnRead’:
objtable.c:474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  474 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘CommonStringTableAsnRead’:
objtable.c:657:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  657 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘CommonBytesTableAsnRead’:
objtable.c:819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  819 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘SeqTableSingleDataFree’:
objtable.c:1225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1225 |    Pointer pnt;
      |            ^~~
objtable.c: In function ‘SeqTableSingleDataAsnRead’:
objtable.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1269 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableMultiDataAsnRead’:
objtable.c:1111:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1111 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtable.c: In function ‘SeqTableSingleDataAsnRead’:
objtable.c:1354:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1354 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtable.c: In function ‘SeqTableSparseIndexAsnRead’:
objtable.c:1559:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1559 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objpubme.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objpubme.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objpubme.c: In function ‘PubmedEntryAsnRead’:
objpubme.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   89 |    AsnReadFunc func;
      |                ^~~~
objpubme.c: In function ‘PubmedUrlAsnRead’:
objpubme.c:288:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  288 |    AsnReadFunc func;
      |                ^~~~
objpubme.c:287:12: warning: unused variable ‘isError’ [-Wunused-variable]
  287 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmdrs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmdrs.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmdrs.c: In function ‘MedlarsEntryAsnRead’:
objmdrs.c:85:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   85 |    AsnReadFunc func;
      |                ^~~~
objmdrs.c: In function ‘MedlarsRecordAsnRead’:
objmdrs.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  259 |    AsnReadFunc func;
      |                ^~~~
objmdrs.c:258:12: warning: unused variable ‘isError’ [-Wunused-variable]
  258 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objproj.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objproj.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objproj.c: In function ‘ProjectAsnRead’:
objproj.c:116:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  116 |    AsnReadFunc func;
      |                ^~~~
objproj.c:115:12: warning: unused variable ‘isError’ [-Wunused-variable]
  115 |    Boolean isError = FALSE;
      |            ^~~~~~~
objproj.c: In function ‘ProjectDescrAsnRead’:
objproj.c:720:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  720 |    AsnReadFunc func;
      |                ^~~~
objproj.c: In function ‘ProjdescFree’:
objproj.c:857:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  857 |    Pointer pnt;
      |            ^~~
objproj.c: In function ‘ProjdescAsnRead’:
objproj.c:898:12: warning: unused variable ‘isError’ [-Wunused-variable]
  898 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
objproj.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objproj.c: In function ‘ProjdescAsnRead’:
objproj.c:958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  958 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objproj.c: In function ‘ProjectItemAsnRead’:
objproj.c:536:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  536 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objgbseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objgbseq.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objgbseq.c: In function ‘GBSetAsnRead’:
objgbseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable]
   66 |    DataVal av;
      |            ^~
objgbseq.c: In function ‘GBSeqAsnRead’:
objgbseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  235 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBReferenceAsnRead’:
objgbseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  742 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBCommentAsnRead’:
objgbseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  983 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBStrucCommentAsnRead’:
objgbseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1150 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBFeatureAsnRead’:
objgbseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1321 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBFeatureSetAsnRead’:
objgbseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1548 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBAltSeqDataAsnRead’:
objgbseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1715 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBXrefAsnRead’:
objgbseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1882 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1881 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBStrucCommentItemAsnRead’:
objgbseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2053 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBIntervalAsnRead’:
objgbseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2233 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBQualifierAsnRead’:
objgbseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2447 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBAltSeqItemAsnRead’:
objgbseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2622 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2621 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtseq.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtseq.c: In function ‘TSeqAsnRead’:
objtseq.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   89 |    AsnReadFunc func;
      |                ^~~~
objtseq.c: In function ‘TSeqSetAsnRead’:
objtseq.c:325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  325 |    AsnReadFunc func;
      |                ^~~~
objtseq.c: In function ‘BioseqToTSeq’:
objtseq.c:452:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable]
  452 |  Uint1 seqcode;
      |        ^~~~~~~
objtseq.c: In function ‘BioseqToMiniTSeq’:
objtseq.c:564:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable]
  564 |  Uint1 seqcode;
      |        ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objinsdseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objinsdseq.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objinsdseq.c: In function ‘INSDSetAsnRead’:
objinsdseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable]
   66 |    DataVal av;
      |            ^~
objinsdseq.c: In function ‘INSDSeqAsnRead’:
objinsdseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  235 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDReferenceAsnRead’:
objinsdseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  742 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDCommentAsnRead’:
objinsdseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  983 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDStrucCommentAsnRead’:
objinsdseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1150 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDFeatureAsnRead’:
objinsdseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1321 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDFeatureSetAsnRead’:
objinsdseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1548 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDAltSeqDataAsnRead’:
objinsdseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1715 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDXrefAsnRead’:
objinsdseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1882 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1881 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDStrucCommentItemAsnRead’:
objinsdseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2053 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDIntervalAsnRead’:
objinsdseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2233 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDQualifierAsnRead’:
objinsdseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2447 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDAltSeqItemAsnRead’:
objinsdseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2622 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2621 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmacro.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmacro.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmacro.c: In function ‘AECRActionAsnRead’:
objmacro.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseActionAsnRead’:
objmacro.c:272:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  272 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:271:12: warning: unused variable ‘isError’ [-Wunused-variable]
  271 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MacroActionListAsnRead’:
objmacro.c:478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  478 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:475:12: warning: unused variable ‘av’ [-Wunused-variable]
  475 |    DataVal av;
      |            ^~
objmacro.c: In function ‘SuspectRuleSetAsnRead’:
objmacro.c:595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  595 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:592:12: warning: unused variable ‘av’ [-Wunused-variable]
  592 |    DataVal av;
      |            ^~
objmacro.c: In function ‘WordSubstitutionAsnRead’:
objmacro.c:731:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  731 |    AsnReadFunc func;
      |                ^~~~
objmacro.c: In function ‘WordSubstitutionSetAsnRead’:
objmacro.c:899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  899 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:896:12: warning: unused variable ‘av’ [-Wunused-variable]
  896 |    DataVal av;
      |            ^~
objmacro.c: In function ‘StringConstraintAsnRead’:
objmacro.c:1045:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1045 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1044:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1044 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StringConstraintSetAsnRead’:
objmacro.c:1307:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1307 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1304:12: warning: unused variable ‘av’ [-Wunused-variable]
 1304 |    DataVal av;
      |            ^~
objmacro.c: In function ‘LocationPosConstraintFree’:
objmacro.c:1403:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1403 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationPosConstraintAsnRead’:
objmacro.c:1432:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1432 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationConstraintAsnRead’:
objmacro.c:1633:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1633 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1632:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1632 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalValAsnRead’:
objmacro.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1849 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1848 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalValChoiceFree’:
objmacro.c:1979:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1979 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FeatQualLegalValChoiceAsnRead’:
objmacro.c:2011:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2011 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalSetAsnRead’:
objmacro.c:2165:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2165 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2162:12: warning: unused variable ‘av’ [-Wunused-variable]
 2162 |    DataVal av;
      |            ^~
objmacro.c: In function ‘FeatQualChoiceFree’:
objmacro.c:2261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2261 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FeatQualChoiceAsnRead’:
objmacro.c:2293:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2293 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldAsnRead’:
objmacro.c:2474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2474 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2473:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2473 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldLegalAsnRead’:
objmacro.c:2641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2641 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2640:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2640 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldPairAsnRead’:
objmacro.c:2807:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2807 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2806:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2806 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaFeatTypeFree’:
objmacro.c:2950:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2950 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘RnaFeatTypeAsnRead’:
objmacro.c:2982:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2982 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaQualAsnRead’:
objmacro.c:3232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3232 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3231:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaQualPairAsnRead’:
objmacro.c:3400:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3400 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3399:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3399 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualPairAsnRead’:
objmacro.c:3576:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3576 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3575:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3575 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualChoiceFree’:
objmacro.c:3704:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3704 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SourceQualChoiceAsnRead’:
objmacro.c:3733:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3733 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualTextValAsnRead’:
objmacro.c:3950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3950 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3949:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3949 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualValChoiceFree’:
objmacro.c:4080:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4080 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SourceQualValChoiceAsnRead’:
objmacro.c:4112:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4112 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualValSetAsnRead’:
objmacro.c:4310:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4310 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4307:12: warning: unused variable ‘av’ [-Wunused-variable]
 4307 |    DataVal av;
      |            ^~
objmacro.c: In function ‘CDSGeneProtFieldPairAsnRead’:
objmacro.c:4442:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4442 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4441:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4441 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldFree’:
objmacro.c:4570:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4570 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MolinfoFieldAsnRead’:
objmacro.c:4599:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoMoleculePairAsnRead’:
objmacro.c:4826:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4826 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4825:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4825 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoTechniquePairAsnRead’:
objmacro.c:4990:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4990 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4989:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4989 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoCompletednessPairAsnRead’:
objmacro.c:5154:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5154 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5153:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5153 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoMolClassPairAsnRead’:
objmacro.c:5318:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5318 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5317:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5317 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoTopologyPairAsnRead’:
objmacro.c:5482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5482 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5481:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5481 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoStrandPairAsnRead’:
objmacro.c:5646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5646 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5645:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5645 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldPairFree’:
objmacro.c:5774:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 5774 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MolinfoFieldPairAsnRead’:
objmacro.c:5821:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5821 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldListAsnRead’:
objmacro.c:6015:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6015 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6012:12: warning: unused variable ‘av’ [-Wunused-variable]
 6012 |    DataVal av;
      |            ^~
objmacro.c: In function ‘MolinfoFieldConstraintAsnRead’:
objmacro.c:6149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6149 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6148:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6148 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StructuredCommentFieldFree’:
objmacro.c:6280:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 6280 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘StructuredCommentFieldAsnRead’:
objmacro.c:6312:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6312 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StructuredCommentFieldPairAsnRead’:
objmacro.c:6508:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6508 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6507:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6507 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘DBLinkFieldPairAsnRead’:
objmacro.c:6678:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6678 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6677:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6677 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldConstraintAsnRead’:
objmacro.c:6843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6843 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6842:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6842 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeFree’:
objmacro.c:6974:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 6974 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’:
objmacro.c:7003:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7003 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintAsnRead’:
objmacro.c:7220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7220 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7219:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7219 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PublicationConstraintAsnRead’:
objmacro.c:7389:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7389 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7388:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7388 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceConstraintAsnRead’:
objmacro.c:7571:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7571 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7570:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7570 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtPseudoConstraintAsnRead’:
objmacro.c:7763:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7763 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7762:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7762 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtConstraintFieldFree’:
objmacro.c:7891:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 7891 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘CDSGeneProtConstraintFieldAsnRead’:
objmacro.c:7920:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7920 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtQualConstraintAsnRead’:
objmacro.c:8095:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8095 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:8094:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8094 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldConstraintAsnRead’:
objmacro.c:8279:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8279 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:8278:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8278 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldTypeFree’:
objmacro.c:8413:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8413 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FieldTypeAsnRead’:
objmacro.c:8457:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8457 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintFree’:
objmacro.c:8666:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8666 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’:
objmacro.c:8695:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8695 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘QuantityConstraintFree’:
objmacro.c:8875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8875 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘QuantityConstraintAsnRead’:
objmacro.c:8904:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8904 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceConstraintAsnRead’:
objmacro.c:9104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9104 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9103:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9103 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TranslationConstraintAsnRead’:
objmacro.c:9332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9332 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9331:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9331 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConstraintChoiceFree’:
objmacro.c:9487:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 9487 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConstraintChoiceAsnRead’:
objmacro.c:9549:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9549 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConstraintChoiceSetAsnRead’:
objmacro.c:9783:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9783 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9780:12: warning: unused variable ‘av’ [-Wunused-variable]
 9780 |    DataVal av;
      |            ^~
objmacro.c: In function ‘TextMarkerFree’:
objmacro.c:9879:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 9879 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TextMarkerAsnRead’:
objmacro.c:9911:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9911 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextPortionAsnRead’:
objmacro.c:10109:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10109 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10108:12: warning: unused variable ‘isError’ [-Wunused-variable]
10108 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldEditAsnRead’:
objmacro.c:10328:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10328 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10327:12: warning: unused variable ‘isError’ [-Wunused-variable]
10327 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldPairTypeFree’:
objmacro.c:10478:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
10478 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FieldPairTypeAsnRead’:
objmacro.c:10528:12: warning: unused variable ‘isError’ [-Wunused-variable]
10528 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyActionAsnRead’:
objmacro.c:10747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10747 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10746:12: warning: unused variable ‘isError’ [-Wunused-variable]
10746 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditActionAsnRead’:
objmacro.c:10927:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10927 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10926:12: warning: unused variable ‘isError’ [-Wunused-variable]
10926 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextTransformFree’:
objmacro.c:11061:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
11061 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TextTransformAsnRead’:
objmacro.c:11096:12: warning: unused variable ‘isError’ [-Wunused-variable]
11096 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextTransformSetAsnRead’:
objmacro.c:11269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11269 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11266:12: warning: unused variable ‘av’ [-Wunused-variable]
11266 |    DataVal av;
      |            ^~
objmacro.c: In function ‘ConvertActionAsnRead’:
objmacro.c:11405:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11405 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11404:12: warning: unused variable ‘isError’ [-Wunused-variable]
11404 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CopyActionAsnRead’:
objmacro.c:11600:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11600 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11599:12: warning: unused variable ‘isError’ [-Wunused-variable]
11599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SwapActionAsnRead’:
objmacro.c:11768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11768 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11767:12: warning: unused variable ‘isError’ [-Wunused-variable]
11767 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AECRParseActionAsnRead’:
objmacro.c:11932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11932 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11931:12: warning: unused variable ‘isError’ [-Wunused-variable]
11931 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveActionAsnRead’:
objmacro.c:12151:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12151 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12150:12: warning: unused variable ‘isError’ [-Wunused-variable]
12150 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveOutsideActionAsnRead’:
objmacro.c:12312:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12312 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12311:12: warning: unused variable ‘isError’ [-Wunused-variable]
12311 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ActionChoiceFree’:
objmacro.c:12455:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12455 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ActionChoiceAsnRead’:
objmacro.c:12508:12: warning: unused variable ‘isError’ [-Wunused-variable]
12508 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcOrgChoiceFree’:
objmacro.c:12697:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12697 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’:
objmacro.c:12726:12: warning: unused variable ‘isError’ [-Wunused-variable]
12726 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcOrgAsnRead’:
objmacro.c:12911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12910:12: warning: unused variable ‘isError’ [-Wunused-variable]
12910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcGeneralIdFree’:
objmacro.c:13042:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13042 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’:
objmacro.c:13074:12: warning: unused variable ‘isError’ [-Wunused-variable]
13074 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcFree’:
objmacro.c:13232:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13232 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcAsnRead’:
objmacro.c:13270:12: warning: unused variable ‘isError’ [-Wunused-variable]
13270 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseDstOrgAsnRead’:
objmacro.c:13526:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
13526 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:13525:12: warning: unused variable ‘isError’ [-Wunused-variable]
13525 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseDestFree’:
objmacro.c:13657:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13657 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseDestAsnRead’:
objmacro.c:13695:12: warning: unused variable ‘isError’ [-Wunused-variable]
13695 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationIntervalAsnRead’:
objmacro.c:13905:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
13905 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:13904:12: warning: unused variable ‘isError’ [-Wunused-variable]
13904 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationChoiceFree’:
objmacro.c:14033:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
14033 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationChoiceAsnRead’:
objmacro.c:14065:12: warning: unused variable ‘isError’ [-Wunused-variable]
14065 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceListAsnRead’:
objmacro.c:14241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14241 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14238:12: warning: unused variable ‘av’ [-Wunused-variable]
14238 |    DataVal av;
      |            ^~
objmacro.c: In function ‘SequenceListChoiceFree’:
objmacro.c:14337:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
14337 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SequenceListChoiceAsnRead’:
objmacro.c:14369:12: warning: unused variable ‘isError’ [-Wunused-variable]
14369 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyFeatureActionAsnRead’:
objmacro.c:14560:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14560 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14559:12: warning: unused variable ‘isError’ [-Wunused-variable]
14559 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveFeatureActionAsnRead’:
objmacro.c:14827:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14827 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14826:12: warning: unused variable ‘isError’ [-Wunused-variable]
14826 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFromCDSOptionsAsnRead’:
objmacro.c:14994:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14994 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14993:12: warning: unused variable ‘isError’ [-Wunused-variable]
14993 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureSrcOptionsFree’:
objmacro.c:15131:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
15131 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConvertFeatureSrcOptionsAsnRead’:
objmacro.c:15163:12: warning: unused variable ‘isError’ [-Wunused-variable]
15163 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RegionTypeAsnRead’:
objmacro.c:15332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15332 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15331:12: warning: unused variable ‘isError’ [-Wunused-variable]
15331 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureDstOptionsFree’:
objmacro.c:15451:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
15451 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’:
objmacro.c:15486:12: warning: unused variable ‘isError’ [-Wunused-variable]
15486 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureActionAsnRead’:
objmacro.c:15702:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15702 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15701:12: warning: unused variable ‘isError’ [-Wunused-variable]
15701 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditLocationStrandAsnRead’:
objmacro.c:15911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15910:12: warning: unused variable ‘isError’ [-Wunused-variable]
15910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘Partial5SetActionAsnRead’:
objmacro.c:16075:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16075 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16074:12: warning: unused variable ‘isError’ [-Wunused-variable]
16074 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘Partial3SetActionAsnRead’:
objmacro.c:16239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16238:12: warning: unused variable ‘isError’ [-Wunused-variable]
16238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PartialBothSetActionAsnRead’:
objmacro.c:16403:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16403 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16402:12: warning: unused variable ‘isError’ [-Wunused-variable]
16402 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ExtendToFeatureAsnRead’:
objmacro.c:16568:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16568 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16567:12: warning: unused variable ‘isError’ [-Wunused-variable]
16567 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationEditTypeFree’:
objmacro.c:16708:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
16708 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationEditTypeAsnRead’:
objmacro.c:16755:12: warning: unused variable ‘isError’ [-Wunused-variable]
16755 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditFeatureLocationActionAsnRead’:
objmacro.c:17032:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17032 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17031:12: warning: unused variable ‘isError’ [-Wunused-variable]
17031 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoBlockAsnRead’:
objmacro.c:17232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17232 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17231:12: warning: unused variable ‘isError’ [-Wunused-variable]
17231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveDescriptorActionAsnRead’:
objmacro.c:17415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17415 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17414:12: warning: unused variable ‘isError’ [-Wunused-variable]
17414 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AutodefActionAsnRead’:
objmacro.c:17584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17584 |    AsnReadFunc func;
      |                ^~~~
objmacro.c: In function ‘FixPubCapsActionAsnRead’:
objmacro.c:17758:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17758 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17757:12: warning: unused variable ‘isError’ [-Wunused-variable]
17757 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SortFieldsActionAsnRead’:
objmacro.c:17963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17963 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17962:12: warning: unused variable ‘isError’ [-Wunused-variable]
17962 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixAuthorCapsAsnRead’:
objmacro.c:18142:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18142 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18141:12: warning: unused variable ‘isError’ [-Wunused-variable]
18141 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixCapsActionFree’:
objmacro.c:18261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
18261 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixCapsActionAsnRead’:
objmacro.c:18296:12: warning: unused variable ‘isError’ [-Wunused-variable]
18296 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixFormatActionFree’:
objmacro.c:18470:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
18470 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixFormatActionAsnRead’:
objmacro.c:18499:12: warning: unused variable ‘isError’ [-Wunused-variable]
18499 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveDuplicateFeatureActionAsnRead’:
objmacro.c:18705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18705 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18704:12: warning: unused variable ‘isError’ [-Wunused-variable]
18704 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘GeneXrefTypeAsnRead’:
objmacro.c:18899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18899 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18898:12: warning: unused variable ‘isError’ [-Wunused-variable]
18898 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘XrefTypeFree’:
objmacro.c:19036:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
19036 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘XrefTypeAsnRead’:
objmacro.c:19068:12: warning: unused variable ‘isError’ [-Wunused-variable]
19068 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveXrefsActionAsnRead’:
objmacro.c:19239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19238:12: warning: unused variable ‘isError’ [-Wunused-variable]
19238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MakeGeneXrefActionAsnRead’:
objmacro.c:19410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19410 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19409:12: warning: unused variable ‘isError’ [-Wunused-variable]
19409 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AuthorFixActionAsnRead’:
objmacro.c:19578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19578 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19577:12: warning: unused variable ‘isError’ [-Wunused-variable]
19577 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘UpdateSequencesActionAsnRead’:
objmacro.c:19747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19747 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19746:12: warning: unused variable ‘isError’ [-Wunused-variable]
19746 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CreateTSAIdsSrcFree’:
objmacro.c:19877:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
19877 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’:
objmacro.c:19909:12: warning: unused variable ‘isError’ [-Wunused-variable]
19909 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CreateTSAIdsActionAsnRead’:
objmacro.c:20092:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20092 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20091:12: warning: unused variable ‘isError’ [-Wunused-variable]
20091 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AutofixActionAsnRead’:
objmacro.c:20274:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20274 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20273:12: warning: unused variable ‘isError’ [-Wunused-variable]
20273 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixSetsActionFree’:
objmacro.c:20395:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
20395 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixSetsActionAsnRead’:
objmacro.c:20424:12: warning: unused variable ‘isError’ [-Wunused-variable]
20424 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TableMatchTypeFree’:
objmacro.c:20582:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
20582 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TableMatchTypeAsnRead’:
objmacro.c:20614:12: warning: unused variable ‘isError’ [-Wunused-variable]
20614 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TableMatchAsnRead’:
objmacro.c:20873:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20873 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20872:12: warning: unused variable ‘isError’ [-Wunused-variable]
20872 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyTableExtraDataFree’:
objmacro.c:21004:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
21004 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ApplyTableExtraDataAsnRead’:
objmacro.c:21033:12: warning: unused variable ‘isError’ [-Wunused-variable]
21033 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyTableActionAsnRead’:
objmacro.c:21210:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21210 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21209:12: warning: unused variable ‘isError’ [-Wunused-variable]
21209 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AddFileActionAsnRead’:
objmacro.c:21411:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21411 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21410:12: warning: unused variable ‘isError’ [-Wunused-variable]
21410 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AddDescriptorListActionAsnRead’:
objmacro.c:21582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21582 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21581:12: warning: unused variable ‘isError’ [-Wunused-variable]
21581 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveSequencesActionAsnRead’:
objmacro.c:21753:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21753 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21752:12: warning: unused variable ‘isError’ [-Wunused-variable]
21752 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘UpdateReplacedEcNumbersActionAsnRead’:
objmacro.c:21911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21910:12: warning: unused variable ‘isError’ [-Wunused-variable]
21910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RetranslateCdsActionAsnRead’:
objmacro.c:22084:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
22084 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:22083:12: warning: unused variable ‘isError’ [-Wunused-variable]
22083 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AdjustFeaturesForGapsActionAsnRead’:
objmacro.c:22239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
22239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:22238:12: warning: unused variable ‘isError’ [-Wunused-variable]
22238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MacroActionChoiceFree’:
objmacro.c:22412:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
22412 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MacroActionChoiceAsnRead’:
objmacro.c:22522:12: warning: unused variable ‘isError’ [-Wunused-variable]
22522 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SearchFuncFree’:
objmacro.c:23116:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
23116 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SearchFuncAsnRead’:
objmacro.c:23154:12: warning: unused variable ‘isError’ [-Wunused-variable]
23154 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SimpleReplaceAsnRead’:
objmacro.c:23425:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23425 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23424:12: warning: unused variable ‘isError’ [-Wunused-variable]
23424 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ReplaceFuncFree’:
objmacro.c:23564:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
23564 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ReplaceFuncAsnRead’:
objmacro.c:23599:12: warning: unused variable ‘isError’ [-Wunused-variable]
23599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ReplaceRuleAsnRead’:
objmacro.c:23781:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23781 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23780:12: warning: unused variable ‘isError’ [-Wunused-variable]
23780 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SuspectRuleAsnRead’:
objmacro.c:23955:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23955 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23954:12: warning: unused variable ‘isError’ [-Wunused-variable]
23954 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldPairAsnRead’:
objmacro.c:5883:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5883 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TextTransformAsnRead’:
objmacro.c:11149:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11149 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’:
objmacro.c:13133:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13133 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘StructuredCommentFieldAsnRead’:
objmacro.c:6371:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6371 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixSetsActionAsnRead’:
objmacro.c:20483:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20483 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ConstraintChoiceAsnRead’:
objmacro.c:9631:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9631 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixFormatActionAsnRead’:
objmacro.c:18565:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
18565 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixCapsActionAsnRead’:
objmacro.c:18363:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
18363 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SourceQualChoiceAsnRead’:
objmacro.c:3806:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3806 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SourceQualValChoiceAsnRead’:
objmacro.c:4182:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4182 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FieldTypeAsnRead’:
objmacro.c:8543:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8543 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MolinfoFieldAsnRead’:
objmacro.c:4679:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4679 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MacroActionChoiceAsnRead’:
objmacro.c:22829:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
22829 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationPosConstraintAsnRead’:
objmacro.c:1491:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1491 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FeatQualChoiceAsnRead’:
objmacro.c:2342:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2342 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘RnaFeatTypeAsnRead’:
objmacro.c:3076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3076 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’:
objmacro.c:7076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7076 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’:
objmacro.c:8768:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8768 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘QuantityConstraintAsnRead’:
objmacro.c:8963:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8963 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TextMarkerAsnRead’:
objmacro.c:9970:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9970 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FieldPairTypeAsnRead’:
objmacro.c:10594:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10594 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ActionChoiceAsnRead’:
objmacro.c:12578:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12578 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’:
objmacro.c:12778:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12778 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcAsnRead’:
objmacro.c:13365:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13365 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseDestAsnRead’:
objmacro.c:13762:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13762 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationChoiceAsnRead’:
objmacro.c:14121:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14121 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SequenceListChoiceAsnRead’:
objmacro.c:14418:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14418 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’:
objmacro.c:15556:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
15556 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationEditTypeAsnRead’:
objmacro.c:16859:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16859 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’:
objmacro.c:19958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
19958 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TableMatchTypeAsnRead’:
objmacro.c:20712:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20712 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SearchFuncAsnRead’:
objmacro.c:23259:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23259 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ReplaceFuncAsnRead’:
objmacro.c:23648:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23648 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objent2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objent2.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objent2.c: In function ‘Entrez2IdListAsnRead’:
objent2.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objent2.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanExpAsnRead’:
objent2.c:277:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  277 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2BooleanElementFree’:
objent2.c:416:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  416 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘Entrez2BooleanElementAsnRead’:
objent2.c:457:12: warning: unused variable ‘isError’ [-Wunused-variable]
  457 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LimitsAsnRead’:
objent2.c:666:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  666 |    AsnReadFunc func;
      |                ^~~~
objent2.c:665:12: warning: unused variable ‘isError’ [-Wunused-variable]
  665 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanTermAsnRead’:
objent2.c:844:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  844 |    AsnReadFunc func;
      |                ^~~~
objent2.c:843:12: warning: unused variable ‘isError’ [-Wunused-variable]
  843 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2RequestAsnRead’:
objent2.c:1041:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1041 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1040:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1040 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘E2RequestFree’:
objent2.c:1203:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1203 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘E2RequestAsnRead’:
objent2.c:1256:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1256 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2EvalBooleanAsnRead’:
objent2.c:1493:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1493 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1492:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1492 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermQueryAsnRead’:
objent2.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1670 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1669:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1669 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermPosAsnRead’:
objent2.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1849 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1848 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2HierQueryAsnRead’:
objent2.c:2036:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2036 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2035:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2035 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2GetLinksAsnRead’:
objent2.c:2224:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2224 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2223:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2223 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2IdAsnRead’:
objent2.c:2419:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2419 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2418:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2418 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DtFilterAsnRead’:
objent2.c:2584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2584 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2583:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2583 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2ReplyAsnRead’:
objent2.c:2762:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2762 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2761:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2761 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘E2ReplyFree’:
objent2.c:2935:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2935 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘E2ReplyAsnRead’:
objent2.c:2991:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2991 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2InfoAsnRead’:
objent2.c:3237:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3237 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2BooleanReplyAsnRead’:
objent2.c:3409:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3409 |    AsnReadFunc func;
      |                ^~~~
objent2.c:3408:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3408 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumListAsnRead’:
objent2.c:3587:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3587 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2TermListAsnRead’:
objent2.c:3749:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3749 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2HierNodeAsnRead’:
objent2.c:3922:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3922 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2LinkSetAsnRead’:
objent2.c:4122:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4122 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4121:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4121 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkCountListAsnRead’:
objent2.c:4299:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4299 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2DbInfoAsnRead’:
objent2.c:4466:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4466 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2FieldInfoAsnRead’:
objent2.c:4706:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4706 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4705:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4705 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkInfoAsnRead’:
objent2.c:4950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4950 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4949:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4949 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumFieldInfoAsnRead’:
objent2.c:5149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5149 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5148:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5148 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumAsnRead’:
objent2.c:5325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5325 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2DocsumDataAsnRead’:
objent2.c:5488:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5488 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5487:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5487 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermAsnRead’:
objent2.c:5655:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5655 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5654:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5654 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkCountAsnRead’:
objent2.c:5838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5838 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5837:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5837 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanElementAsnRead’:
objent2.c:524:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  524 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objent2.c: In function ‘E2RequestAsnRead’:
objent2.c:1333:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1333 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objent2.c: In function ‘E2ReplyAsnRead’:
objent2.c:3075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3075 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ent2api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ent2api.h:45,
                 from ent2api.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pmfapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pmfapi.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pmfapi.c:2813:24: warning: ‘SortByInt4’ defined but not used [-Wunused-function]
 2813 | static int LIBCALLBACK SortByInt4 (VoidPtr vp1, VoidPtr vp2)
      |                        ^~~~~~~~~~
pmfapi.c: In function ‘ConfirmAccStrInSep’:
pmfapi.c:1314:3: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1314 |   SeqIdFree (tmp);
      |   ^~~~~~~~~~~~~~~
pmfapi.c: In function ‘PubMedSynchronousQuery’:
pmfapi.c:1224:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1224 |     printf ("PubMedWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQueryEx’:
pmfapi.c:1479:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1479 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQueryTI’:
pmfapi.c:1663:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1663 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQuerySRA’:
pmfapi.c:1744:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1744 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiRevHistSynchronousQuery’:
pmfapi.c:1817:61: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1817 |     printf ("GiRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                   ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiAccVerSynchronousQuery’:
pmfapi.c:1869:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1869 |     printf ("GiAccVerWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                  ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘AccnRevHistSynchronousQuery’:
pmfapi.c:1920:63: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1920 |     printf ("AccnRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                     ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiSeqIdSetSynchronousQuery’:
pmfapi.c:1971:62: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1971 |     printf ("GiSeqIdSetWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                    ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘AccnListSynchronousQuery’:
pmfapi.c:2021:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2021 |     printf ("AccnListWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                  ~~~~~~~~~~^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtax3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtax3.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtax3.c: In function ‘Taxon3RequestAsnRead’:
objtax3.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   86 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3RequestFree’:
objtax3.c:200:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  200 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘SequenceOfIntAsnRead’:
objtax3.c:418:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  418 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘Taxon3ReplyAsnRead’:
objtax3.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3ReplyFree’:
objtax3.c:661:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  661 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘T3ErrorAsnRead’:
objtax3.c:872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  872 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3DataAsnRead’:
objtax3.c:1072:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1072 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘Value_valueFree’:
objtax3.c:1253:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1253 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘T3StatusFlagsAsnRead’:
objtax3.c:1283:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1283 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3RefreshFlagsAsnRead’:
objtax3.c:1608:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1608 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objtax3.c:5:
objtax3.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objtax3.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from objtax3.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objtax3.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objtax3.c: In function ‘T3ReplyAsnRead’:
objtax3.c:741:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  741 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c: In function ‘T3StatusFlagsAsnRead’:
objtax3.c:1421:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1421 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c:1362:10: note: ‘choice’ was declared here
 1362 |    Uint1 choice;
      |          ^~~~~~
objtax3.c: In function ‘T3RequestAsnRead’:
objtax3.c:297:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  297 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tax3api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tax3api.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tax3api.c: In function ‘Tax3SynchronousQuery’:
tax3api.c:189:27: warning: variable ‘t3’ set but not used [-Wunused-but-set-variable]
  189 |   time_t          t1, t2, t3;
      |                           ^~
tax3api.c: In function ‘CheckSuggestedFixes’:
tax3api.c:1030:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable]
 1030 |   T3ErrorPtr       tep;
      |                    ^~~
tax3api.c: In function ‘TryNewSuggestedFixes’:
tax3api.c:1142:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable]
 1142 |   T3ErrorPtr       tep;
      |                    ^~~
tax3api.c: In function ‘RemoveSpeciesSpecific’:
tax3api.c:1398:13: warning: unused variable ‘cp’ [-Wunused-variable]
 1398 |     CharPtr cp;
      |             ^~
At top level:
tax3api.c:3399:13: warning: ‘AddBioSourcesToChecklist’ defined but not used [-Wunused-function]
 3399 | static void AddBioSourcesToChecklist (ValNodePtr biop_list, ValNodePtr check_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
tax3api.c:2699:16: warning: ‘MatchesGenBankSynonym’ defined but not used [-Wunused-function]
 2699 | static Boolean MatchesGenBankSynonym (CharPtr txt, OrgRefPtr response_org)
      |                ^~~~~~~~~~~~~~~~~~~~~
tax3api.c:2682:16: warning: ‘MatchesSynonym’ defined but not used [-Wunused-function]
 2682 | static Boolean MatchesSynonym (CharPtr txt, OrgRefPtr response_org)
      |                ^~~~~~~~~~~~~~
tax3api.c:2273:16: warning: ‘EndsWithSp’ defined but not used [-Wunused-function]
 2273 | static Boolean EndsWithSp (CharPtr str)
      |                ^~~~~~~~~~
tax3api.c:990:19: warning: ‘MakeTaxFixRequestList’ defined but not used [-Wunused-function]
  990 | static ValNodePtr MakeTaxFixRequestList (ValNodePtr biop_list)
      |                   ^~~~~~~~~~~~~~~~~~~~~
tax3api.c:362:16: warning: ‘HasMisspellingFlag’ defined but not used [-Wunused-function]
  362 | static Boolean HasMisspellingFlag (T3DataPtr t)
      |                ^~~~~~~~~~~~~~~~~~
tax3api.c:298:13: warning: ‘SaveTaxon3Request’ defined but not used [-Wunused-function]
  298 | static void SaveTaxon3Request (Taxon3RequestPtr t3rp, CharPtr path)
      |             ^~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objegkludge.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objegkludge.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objentgene.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objentgene.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objentgene.c: In function ‘EntrezgeneAsnRead’:
objentgene.c:103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  103 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘EntrezgeneSetAsnRead’:
objentgene.c:412:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  412 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:409:12: warning: unused variable ‘av’ [-Wunused-variable]
  409 |    DataVal av;
      |            ^~
objentgene.c: In function ‘GeneTrackAsnRead’:
objentgene.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘GeneCommentaryAsnRead’:
objentgene.c:768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  768 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘Method_methodFree’:
objentgene.c:1073:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1073 |    Pointer pnt;
      |            ^~~
objentgene.c: In function ‘MapsAsnRead’:
objentgene.c:1104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1104 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1103:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1103 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘Method_methodAsnRead’:
objentgene.c:1184:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1184 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘GeneSourceAsnRead’:
objentgene.c:1426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1426 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1425:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1425 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘XtraTermsAsnRead’:
objentgene.c:1641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1641 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1640:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1640 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘OtherSourceAsnRead’:
objentgene.c:1812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1812 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1811:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1811 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘MapsAsnRead’:
objentgene.c:1236:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1236 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objentgene.c:1183:10: note: ‘choice’ was declared here
 1183 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmla2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmla2.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmla2.c: In function ‘Mla2RequestFree’:
objmla2.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objmla2.c: In function ‘Mla22RequestAsnRead’:
objmla2.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable]
   96 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla2.c: In function ‘TitleMsg2AsnRead’:
objmla2.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  447 |    AsnReadFunc func;
      |                ^~~~
objmla2.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable]
  446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla2.c: In function ‘TitleMsgList2AsnRead’:
objmla2.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  613 |    AsnReadFunc func;
      |                ^~~~
objmla2.c: In function ‘Mla22RequestAsnRead’:
objmla2.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  249 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmla2.c: In function ‘Mla2BackAsnRead’:
objmla2.c:904:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  904 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mla2api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/mla2api.h:45,
                 from mla2api.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF qblastapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from qblastapi.c:123:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
qblastapi.c: In function ‘SecondQBlastCallback’:
qblastapi.c:262:15: warning: variable ‘waiting’ set but not used [-Wunused-but-set-variable]
  262 |   Boolean     waiting = FALSE;
      |               ^~~~~~~
qblastapi.c: In function ‘BLASTGetSeqAnnotByRIDEx’:
qblastapi.c:826:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  826 |     EIO_Status   status;
      |                  ^~~~~~
qblastapi.c: In function ‘BLASTGetQueryBioseqByRIDEx’:
qblastapi.c:871:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  871 |     EIO_Status   status;
      |                  ^~~~~~
qblastapi.c: In function ‘QBlastCheckQueue’:
qblastapi.c:688:36: warning: ‘&FORMAT_OBJECT=Alignment&FOR...’ directive writing 43 bytes into a region of size between 5 and 68 [-Wformat-overflow=]
  688 |       sprintf (str, "CMD=Get&RID=%s&FORMAT_OBJECT=Alignment&FORMAT_TYPE=ASN.1\n", curr->rid);
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from qblastapi.c:123:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 56 and 119 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vecscnapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from vecscnapi.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmim.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmim.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmim.c: In function ‘MimSetAsnRead’:
objmim.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   86 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimDateAsnRead’:
objmim.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  248 |    AsnReadFunc func;
      |                ^~~~
objmim.c:247:12: warning: unused variable ‘isError’ [-Wunused-variable]
  247 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimEntryAsnRead’:
objmim.c:448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  448 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimCitAsnRead’:
objmim.c:909:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  909 |    AsnReadFunc func;
      |                ^~~~
objmim.c:908:12: warning: unused variable ‘isError’ [-Wunused-variable]
  908 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimTextAsnRead’:
objmim.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1096 |    AsnReadFunc func;
      |                ^~~~
objmim.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1095 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimEditItemAsnRead’:
objmim.c:1276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1276 |    AsnReadFunc func;
      |                ^~~~
objmim.c:1275:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1275 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimAllelicVariantAsnRead’:
objmim.c:1448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1448 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimIndexTermAsnRead’:
objmim.c:1640:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1640 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimReferenceAsnRead’:
objmim.c:1819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1819 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimLinkAsnRead’:
objmim.c:2195:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2195 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2194:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2194 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimAuthorAsnRead’:
objmim.c:2369:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2369 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2368:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2368 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimPageAsnRead’:
objmim.c:2535:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2535 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2534:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2534 |    Boolean isError = FALSE;
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objvalid.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objvalid.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objvalid.c: In function ‘FieldRuleAsnRead’:
objvalid.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   88 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:87:12: warning: unused variable ‘isError’ [-Wunused-variable]
   87 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘FieldSetAsnRead’:
objvalid.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  259 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:256:12: warning: unused variable ‘av’ [-Wunused-variable]
  256 |    DataVal av;
      |            ^~
objvalid.c: In function ‘DependentFieldRuleAsnRead’:
objvalid.c:396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  396 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:395:12: warning: unused variable ‘isError’ [-Wunused-variable]
  395 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘DependentFieldSetAsnRead’:
objvalid.c:582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  582 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:579:12: warning: unused variable ‘av’ [-Wunused-variable]
  579 |    DataVal av;
      |            ^~
objvalid.c: In function ‘CommentRuleAsnRead’:
objvalid.c:721:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  721 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:720:12: warning: unused variable ‘isError’ [-Wunused-variable]
  720 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘CommentSetAsnRead’:
objvalid.c:926:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  926 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:923:12: warning: unused variable ‘av’ [-Wunused-variable]
  923 |    DataVal av;
      |            ^~
objvalid.c: In function ‘PhraseListAsnRead’:
objvalid.c:1043:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1043 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:1040:12: warning: unused variable ‘av’ [-Wunused-variable]
 1040 |    DataVal av;
      |            ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mimapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mimapi.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddapi.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqport.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from seqport.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqport.c: In function ‘productLoc_to_locationLoc’:
seqport.c:4260:13: warning: variable ‘is_cdregion’ set but not used [-Wunused-but-set-variable]
 4260 |     Boolean is_cdregion = FALSE;
      |             ^~~~~~~~~~~
seqport.c: In function ‘NaLocFromNaInterval’:
seqport.c:4590:8: warning: variable ‘p_end_pos’ set but not used [-Wunused-but-set-variable]
 4590 |   Int4 p_end_pos;    /*the end of the product sequence in the current loc*/
      |        ^~~~~~~~~
seqport.c: In function ‘dnaLoc_to_aaLoc’:
seqport.c:4706:18: warning: variable ‘cds_right’ set but not used [-Wunused-but-set-variable]
 4706 |   Int4 cds_left, cds_right;
      |                  ^~~~~~~~~
seqport.c:4706:8: warning: variable ‘cds_left’ set but not used [-Wunused-but-set-variable]
 4706 |   Int4 cds_left, cds_right;
      |        ^~~~~~~~
seqport.c: In function ‘DeltaRevComp’:
seqport.c:5388:21: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable]
 5388 |   DeltaSeqPtr  dsp, dspnext;
      |                     ^~~~~~~
seqport.c: In function ‘SeqSearchEnterNucWord’:
seqport.c:6943:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable]
 6943 |   Int2     next, patLen, state;
      |                  ^~~~~~
seqport.c: In function ‘ProtSearchEnterProtWord’:
seqport.c:7817:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable]
 7817 |   Int2     next, patLen, state;
      |                  ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqport.c:62:
seqport.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sequtil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from sequtil.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequtil.c: In function ‘GetPointsForLeftAndRightOffsets’:
sequtil.c:7994:11: warning: variable ‘first_strand’ set but not used [-Wunused-but-set-variable]
 7994 |     Uint1 first_strand, last_strand;
      |           ^~~~~~~~~~~~
sequtil.c: In function ‘SeqPointWriteEx’:
sequtil.c:8532:15: warning: variable ‘fuzzlen’ set but not used [-Wunused-but-set-variable]
 8532 |     Int4      fuzzlen, id_len;
      |               ^~~~~~~
sequtil.c: In function ‘TaxNameFromCommon’:
sequtil.c:8687:42: warning: missing braces around initializer [-Wmissing-braces]
 8687 |     static Nlm_TaxCommon taxcommon[40] = {
      |                                          ^
 8688 |     "Chinese hamsters", "Cricetulus sp."
      |     {
 8689 |     ,"Syrian golden hamsters", "Mesocricetus auratus"
      |     }{
 8690 |     ,"Syrian hamsters", "Mesocricetus sp."
      |     }{
 8691 |     ,"barley", "Hordeum sp."
      |     }{
 8692 |     ,"carrots", "Daucus sp."
      |     }{
 8693 |     ,"cats", "Felis sp."
      |     }{
 8694 |     ,"cattles", "Bos sp."
      |     }{
 8695 |     ,"chickens", "Gallus sp."
      |     }{
 8696 |     ,"chimpanzees", "Pan sp."
      |     }{
 8697 |     ,"chimpanzes", "Pan sp."
      |     }{
 8698 |     ,"corn", "Zea sp."
      |     }{
 8699 |     ,"cucumber", "Cucumis sativus"
      |     }{
 8700 |     ,"dogs", "Canis sp."
      |     }{
 8701 |     ,"goats", "Capra sp."
      |     }{
 8702 |     ,"gorillas", "Gorilla sp."
      |     }{
 8703 |     ,"guinea pigs", "Cavia sp."
      |     }{
 8704 |     ,"hamsters", "Cricetidae gen. sp."
      |     }{
 8705 |     ,"horses", "Equus sp."
      |     }{
 8706 |     ,"humans", "Homo sapiens"
      |     }{
 8707 |     ,"maize", "Zea sp."
      |     }{
 8708 |     ,"mice", "Mus sp."
      |     }{
 8709 |     ,"mouse", "Mus sp."
      |     }{
 8710 |     ,"peas", "Pisum sp."
      |     }{
 8711 |     ,"potatoes", "Solanum sp."
      |     }{
 8712 |     ,"potato", "Solanum sp."
      |     }{
 8713 |     ,"quails", "Phasianidae gen. sp."
      |     }{
 8714 |     ,"rabbits", "Oryctolagus sp."
      |     }{
 8715 |     ,"rats", "Rattus sp."
      |     }{
 8716 |     ,"rices", "Oryza sp."
      |     }{
 8717 |     ,"sheeps", "Ovis sp."
      |     }{
 8718 |     ,"sorghums", "Sorghum sp."
      |     }{
 8719 |     ,"soybeans", "Glycine sp."
      |     }{
 8720 |     ,"spinach", "Spinacia sp."
      |     }{
 8721 |     ,"swine", "Sus sp."
      |     }{
 8722 |     ,"tobacco", "Nicotiania sp."
      |     }{
 8723 |     ,"tomatoes", "Lycopersicon sp."
      |     }{
 8724 |     ,"tomato", "Lycopersicon sp."
      |     }{
 8725 |     ,"turkeys", "Meleagris sp."
      |     }{
 8726 |     ,"wheat", "Triticum sp."
      |     }{
 8727 |     ,"zebrafish", "Brachydanio sp."
      |     }{
 8728 | };
      | }
sequtil.c: In function ‘GetBestScoreAndEvalueFromScorePtr’:
sequtil.c:9510:48: warning: variable ‘sum_set’ set but not used [-Wunused-but-set-variable]
 9510 |     Boolean score_set=FALSE, evalue_set=FALSE, sum_set=FALSE, bit_set=FALSE;
      |                                                ^~~~~~~
sequtil.c: In function ‘SeqIdFromAccessionEx’:
sequtil.c:10110:38: warning: variable ‘sip2’ set but not used [-Wunused-but-set-variable]
10110 |                             SeqIdPtr sip2;
      |                                      ^~~~
sequtil.c: In function ‘GetThePointForOffsetEx’:
sequtil.c:7954:14: warning: ‘last_strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7954 |           if (last_strand == Seq_strand_minus)
      |              ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prtutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from ../include/prtutil.h:69,
                 from prtutil.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prtutil.c: In function ‘StdFormatPrint’:
prtutil.c:1422:10: warning: unused variable ‘ptr’ [-Wunused-variable]
 1422 |  CharPtr ptr = NULL;
      |          ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF simple.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/simple.h:63,
                 from simple.c:68:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from simple.c:69:
../include/all.h:7293: warning: "RNA_QUAL" redefined
 7293 | #define RNA_QUAL &at[2254]
      | 
../include/all.h:5823: note: this is the location of the previous definition
 5823 | #define RNA_QUAL &at[1025]
      | 
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tofasta.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from tofasta.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tofasta.c: In function ‘DoSpecialDefline’:
tofasta.c:1461:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable]
 1461 |   SeqFeatPtr         gene = NULL;
      |                      ^~~~
tofasta.c: In function ‘FastaIdEx’:
tofasta.c:3100:15: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable]
 3100 |     SeqIdPtr  sip;
      |               ^~~
tofasta.c: In function ‘CreateDefLineExEx’:
tofasta.c:4991:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4991 |             if (vnp != NULL)
      |             ^~
tofasta.c:4993:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4993 |               if (title != NULL) {
      |               ^~
tofasta.c: In function ‘x_SetSuffix’:
tofasta.c:8313:24: warning: variable ‘buf2’ set but not used [-Wunused-but-set-variable]
 8313 |   Char     buf1 [512], buf2 [256];
      |                        ^~~~
tofasta.c: In function ‘FastaToSeqEntryInternalExEx’:
tofasta.c:2838:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2838 |         fgets(buffer+1, BuffSize, fd);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tofasta.c:2863:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2863 |             fgets(buffer+i+1, FTSE_BUFF_CHUNK, fd);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
tofasta.c:8058:17: warning: ‘x_StringInList’ defined but not used [-Wunused-function]
 8058 |  static Boolean x_StringInList (
      |                 ^~~~~~~~~~~~~~
tofasta.c:3661:19: warning: ‘GatherGenesForCDS’ defined but not used [-Wunused-function]
 3661 | static ValNodePtr GatherGenesForCDS(SeqLocPtr slp)
      |                   ^~~~~~~~~~~~~~~~~
tofasta.c:3627:19: warning: ‘GatherSeqFeatProt’ defined but not used [-Wunused-function]
 3627 | static SeqFeatPtr GatherSeqFeatProt(BioseqPtr bsp)
      |                   ^~~~~~~~~~~~~~~~~
tofasta.c:3541:19: warning: ‘GetCDSProtUnindexed’ defined but not used [-Wunused-function]
 3541 | static SeqFeatPtr GetCDSProtUnindexed (
      |                   ^~~~~~~~~~~~~~~~~~~
tofasta.c:3378:19: warning: ‘IndexedGatherDescrOnBioseq’ defined but not used [-Wunused-function]
 3378 | static ValNodePtr IndexedGatherDescrOnBioseq (ItemInfoPtr iip, BioseqPtr bsp, Uint1 choice)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~
tofasta.c:3283:16: warning: ‘get_descr’ defined but not used [-Wunused-function]
 3283 | static Boolean get_descr (GatherContextPtr gcp)
      |                ^~~~~~~~~
tofasta.c:3254:16: warning: ‘get_descr_on_top’ defined but not used [-Wunused-function]
 3254 | static Boolean get_descr_on_top (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~~~
tofasta.c: In function ‘FastaReadSequenceInternalEx’:
tofasta.c:2713:27: warning: ‘mask_to’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2713 |             mask_sint->to = mask_to;
      |             ~~~~~~~~~~~~~~^~~~~~~~~
tofasta.c: In function ‘FastaToSeqEntryInternalExEx’:
tofasta.c:2866:29: warning: ‘firstchar’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2866 |             for(i =0; (ch = *firstchar) != NULLB; firstchar++, i++) {
      |                             ^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tofile.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tofile.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tomedlin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from tomedlin.c:153:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valid.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from valid.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valid.c: In function ‘GetUserFieldValueString’:
valid.c:2212:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 2212 |     sprintf (buf, "%d", ufp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
valid.c: In function ‘ValidateSeqIdCase’:
valid.c:3574:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
 3574 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘ValidateGenProdSet’:
valid.c:6046:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 6046 |   GeneRefPtr      grp;
      |                   ^~~
valid.c: In function ‘CountAdjacentProc’:
valid.c:6730:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
 6730 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘CheckBioseqEndsForNAndGap’:
valid.c:7040:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 7040 |       if (str [0] == 'n' || str [0] == 'N' && begin_n != NULL) {
      |                                            ^
valid.c:7061:56: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 7061 |       if (str [len - 1] == 'n' || str [len - 1] == 'N' && end_n != NULL) {
      |                                                        ^
valid.c: In function ‘ValidateBioseqInst’:
valid.c:7341:19: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable]
 7341 |   Uint1           tech;
      |                   ^~~~
valid.c:7278:19: warning: variable ‘prot’ set but not used [-Wunused-but-set-variable]
 7278 |   SeqFeatPtr      prot;
      |                   ^~~~
valid.c: In function ‘FixOrgModVoucher’:
valid.c:13882:22: warning: unused variable ‘allowed_type’ [-Wunused-variable]
13882 |   Uint1    type = 0, allowed_type = 0;
      |                      ^~~~~~~~~~~~
valid.c: In function ‘ValidateBioSource’:
valid.c:15514:19: warning: variable ‘isMicrosporidia’ set but not used [-Wunused-but-set-variable]
15514 |   Boolean         isMicrosporidia = FALSE;
      |                   ^~~~~~~~~~~~~~~
valid.c:15512:19: warning: variable ‘isEukaryote’ set but not used [-Wunused-but-set-variable]
15512 |   Boolean         isEukaryote = FALSE;
      |                   ^~~~~~~~~~~
valid.c:15503:19: warning: variable ‘id’ set but not used [-Wunused-but-set-variable]
15503 |   Int4            id;
      |                   ^~
valid.c: In function ‘ValidateDblink’:
valid.c:16786:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
16786 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘ValidateSeqDescrCommon’:
valid.c:16883:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable]
16883 |   PubdescPtr      pdp;
      |                   ^~~
valid.c: In function ‘GetFeatsInGaps’:
valid.c:18858:21: warning: variable ‘realBases’ set but not used [-Wunused-but-set-variable]
18858 |   Int4              realBases;
      |                     ^~~~~~~~~
valid.c:18857:21: warning: variable ‘plusses’ set but not used [-Wunused-but-set-variable]
18857 |   Int4              plusses;
      |                     ^~~~~~~
valid.c:18854:21: warning: variable ‘Ns’ set but not used [-Wunused-but-set-variable]
18854 |   Int4              Ns;
      |                     ^~
valid.c:18851:21: warning: variable ‘dashes’ set but not used [-Wunused-but-set-variable]
18851 |   Int4              dashes;
      |                     ^~~~~~
valid.c: In function ‘ValidateBioseqContextIndexed’:
valid.c:20267:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
20267 |   if (bvsp->is_mrna || cdscount == 1 && genecount < 2) {
      |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
valid.c:19476:65: warning: variable ‘cdsmgene’ set but not used [-Wunused-but-set-variable]
19476 |   SeqFeatPtr         utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene;
      |                                                                 ^~~~~~~~
valid.c:19476:33: warning: variable ‘cdspgene’ set but not used [-Wunused-but-set-variable]
19476 |   SeqFeatPtr         utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene;
      |                                 ^~~~~~~~
valid.c:19475:51: warning: variable ‘utr5minus’ set but not used [-Wunused-but-set-variable]
19475 |   SeqFeatPtr         utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus;
      |                                                   ^~~~~~~~~
valid.c:19475:41: warning: variable ‘utr3plus’ set but not used [-Wunused-but-set-variable]
19475 |   SeqFeatPtr         utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus;
      |                                         ^~~~~~~~
valid.c:19442:41: warning: variable ‘utr3gene’ set but not used [-Wunused-but-set-variable]
19442 |   SeqFeatPtr         cdsgene, utr5gene, utr3gene;
      |                                         ^~~~~~~~
valid.c: In function ‘ReportBadWGSGap’:
valid.c:21153:18: warning: unused variable ‘is_wgs’ [-Wunused-variable]
21153 |     Boolean      is_wgs = FALSE;
      |                  ^~~~~~
valid.c: In function ‘ValidateBarcodeIndexNumber’:
valid.c:21432:21: warning: variable ‘bin_len’ set but not used [-Wunused-but-set-variable]
21432 |   Int4              bin_len;
      |                     ^~~~~~~
valid.c: In function ‘ValidateRptUnit’:
valid.c:23411:32: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
23411 |   Boolean            badchars, found, just_nuc_letters, multi_rpt_unit, in_range;
      |                                ^~~~~
valid.c: In function ‘CheckForCommonCDSProduct’:
valid.c:25628:19: warning: variable ‘is_nw’ set but not used [-Wunused-but-set-variable]
25628 |   Boolean         is_nw = FALSE;
      |                   ^~~~~
valid.c:25625:19: warning: variable ‘is_nc’ set but not used [-Wunused-but-set-variable]
25625 |   Boolean         is_nc = FALSE;
      |                   ^~~~~
valid.c: In function ‘CheckForIllegalDbxref’:
valid.c:26017:16: warning: variable ‘id’ set but not used [-Wunused-but-set-variable]
26017 |   Int4         id;
      |                ^~
valid.c: In function ‘ValidateAnticodon’:
valid.c:26781:53: warning: variable ‘circular’ set but not used [-Wunused-but-set-variable]
26781 |                   ordered = TRUE, adjacent = FALSE, circular = FALSE, exception = FALSE;
      |                                                     ^~~~~~~~
valid.c:26780:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
26780 |   Boolean         retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
      |                   ^~~~~~
valid.c: In function ‘IsGeneXrefRedundant’:
valid.c:28000:17: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
28000 |   Int2          count;
      |                 ^~~~~
valid.c: In function ‘ValidateSeqFeat’:
valid.c:28328:19: warning: unused variable ‘is_nc’ [-Wunused-variable]
28328 |   Boolean         is_nc = FALSE;
      |                   ^~~~~
valid.c:28308:19: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
28308 |   Int2            count;
      |                   ^~~~~
valid.c:28286:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable]
28286 |   PubdescPtr      pdp;
      |                   ^~~
valid.c: In function ‘CdTransCheck’:
valid.c:30490:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
30490 |   GeneRefPtr      grp;
      |                   ^~~
valid.c: In function ‘SpliceCheckEx’:
valid.c:31313:19: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
31313 |   SeqEntryPtr     sep;
      |                   ^~~
valid.c: In function ‘CdsProductIdCheck’:
valid.c:31689:15: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
31689 |   GeneRefPtr  grp;
      |               ^~~
valid.c: In function ‘ValidateSeqLoc’:
valid.c:31754:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
31754 |   Boolean         retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
      |                   ^~~~~~
valid.c:31753:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
31753 |   SeqLocPtr       tmp, prev;
      |                        ^~~~
valid.c: In function ‘SortSeqGraphProc’:
valid.c:32156:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
32156 |   } else if (gip2->right < gip2->right) {
      |                          ^
At top level:
valid.c:30138:13: warning: ‘ValidateTranslExcept’ defined but not used [-Wunused-function]
30138 | static void ValidateTranslExcept (
      |             ^~~~~~~~~~~~~~~~~~~~
valid.c:27650:16: warning: ‘CouldExtendPartial’ defined but not used [-Wunused-function]
27650 | static Boolean CouldExtendPartial (SeqLocPtr slp, Boolean partial5)
      |                ^~~~~~~~~~~~~~~~~~
valid.c:20878:28: warning: ‘MultiGeneOverlapFree’ defined but not used [-Wunused-function]
20878 | static MultiGeneOverlapPtr MultiGeneOverlapFree (MultiGeneOverlapPtr m)
      |                            ^~~~~~~~~~~~~~~~~~~~
valid.c:20828:19: warning: ‘ListFeaturesContainedInLocation’ defined but not used [-Wunused-function]
20828 | static ValNodePtr ListFeaturesContainedInLocation (BioseqPtr bsp, SeqLocPtr slp, Uint1 seqfeatChoice, Uint1 featdefChoice)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
valid.c:17541:16: warning: ‘IsEMBLAccn’ defined but not used [-Wunused-function]
17541 | static Boolean IsEMBLAccn (SeqEntryPtr sep, SeqLocPtr location)
      |                ^~~~~~~~~~
valid.c:14642:16: warning: ‘CountryIsClosestToLatLon’ defined but not used [-Wunused-function]
14642 | static Boolean CountryIsClosestToLatLon (
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
valid.c:14545:16: warning: ‘LatLonInRange’ defined but not used [-Wunused-function]
14545 | static Boolean LatLonInRange (
      |                ^~~~~~~~~~~~~
valid.c:13478:16: warning: ‘LatLonIsValid’ defined but not used [-Wunused-function]
13478 | static Boolean LatLonIsValid (CharPtr name)
      |                ^~~~~~~~~~~~~
valid.c:10462:16: warning: ‘ConsistentWithC’ defined but not used [-Wunused-function]
10462 | static Boolean ConsistentWithC (Char ch)
      |                ^~~~~~~~~~~~~~~
valid.c:6952:13: warning: ‘ReportLongSeqId’ defined but not used [-Wunused-function]
 6952 | static void ReportLongSeqId (SeqIdPtr sip, ValidStructPtr vsp, Int4 max_len)
      |             ^~~~~~~~~~~~~~~
valid.c:5932:13: warning: ‘CheckMutSetSources’ defined but not used [-Wunused-function]
 5932 | static void CheckMutSetSources (BioSourcePtr biop, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~
valid.c:4360:13: warning: ‘FindLongIdsThatCollideWhenTruncated’ defined but not used [-Wunused-function]
 4360 | static void FindLongIdsThatCollideWhenTruncated (SeqEntryPtr sep, ValidStructPtr vsp, Int4 trunc_len)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
valid.c:1511:16: warning: ‘IsNotUnclassifiedExcept’ defined but not used [-Wunused-function]
 1511 | static Boolean IsNotUnclassifiedExcept (ValidStructPtr vsp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from valapi.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valapi.c: In function ‘DoesStringMatchExpression’:
valapi.c:263:15: warning: variable ‘errstr’ set but not used [-Wunused-but-set-variable]
  263 |   const char *errstr;
      |               ^~~~~~
valapi.c: In function ‘DoesFieldValueMatchExpression’:
valapi.c:292:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
  292 |     sprintf (buf, "%d", ufp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/alignmgr.h:261,
                 from alignmgr.c:584:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignmgr.c: In function ‘AlnMgrIndexParentSA’:
alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1607 |       sap->saip = (Pointer)AMAlignIndexFree(amaip);
      |                   ^
alignmgr.c: In function ‘AlnMgrGetNthBlockRange’:
alignmgr.c:4182:21: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable]
 4182 |    AMAlignIndexPtr  amaip;
      |                     ^~~~~
alignmgr.c: In function ‘AlnMgrMakeFakeMultipleEx’:
alignmgr.c:5157:21: warning: variable ‘nogap’ set but not used [-Wunused-but-set-variable]
 5157 |    Boolean          nogap;
      |                     ^~~~~
alignmgr.c: In function ‘AlnMgrMapBioseqToBioseq’:
alignmgr.c:10840:19: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
10840 |             Uint1 gap;
      |                   ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from alignmgr.c:584:
alignmgr.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignmgr.c:10572:16: warning: ‘am_merge_after_edit’ defined but not used [-Wunused-function]
10572 | static Boolean am_merge_after_edit (SeqAlignPtr sap)
      |                ^~~~~~~~~~~~~~~~~~~
alignmgr.c:6650:16: warning: ‘AlnMgrJaggedIndex’ defined but not used [-Wunused-function]
 6650 | static Boolean AlnMgrJaggedIndex(SeqAlignPtr sap, AMmsmsPtr ams_head, AMmsmsPtr *ams_mhead, Int4 numrows)
      |                ^~~~~~~~~~~~~~~~~
alignmgr.c:6123:18: warning: ‘AlnMgrConstructOverlaps’ defined but not used [-Wunused-function]
 6123 | static AMmsmsPtr AlnMgrConstructOverlaps(AMmsmsPtr ams_head)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c:5405:13: warning: ‘AlnMgrMergeNeighbors’ defined but not used [-Wunused-function]
 5405 | static void AlnMgrMergeNeighbors(SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrUnpackSeqAlign’:
alignmgr.c:1149:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1149 |             sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrGetNthSeqRangeInSA’:
alignmgr.c:4115:19: warning: ‘tmp_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4115 |             *stop = tmp_end;
      |             ~~~~~~^~~~~~~~~
alignmgr.c:4113:20: warning: ‘tmp_beg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4113 |             *start = tmp_beg;
      |             ~~~~~~~^~~~~~~~~
alignmgr.c: In function ‘am_print_seqalign_indexes’:
alignmgr.c:2416:30: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2416 |             for (j=0; j<(saip->ssdp[i]->numsect); j++)
      |                          ~~~~^~~~~~
alignmgr.c:2481:34: warning: ‘amaip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2481 |                for (j=0; j<(amaip->amadp[i]->numseg); j++)
      |                             ~~~~~^~~~~~~
alignmgr.c: In function ‘am_is_consistent’:
alignmgr.c:10114:13: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10114 |             AlnMgrGetNthUnalignedForNthRow(sap, n, i, &u_start, &u_stop);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrGetSubAlign’:
alignmgr.c:9097:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9097 |          salp = am_cleanupsalp(salp);
      |                 ^~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrMakeMultByIntersectOnMaster’:
alignmgr.c:5592:4: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5592 |    SeqIdFree(sip_tmp);
      |    ^~~~~~~~~~~~~~~~~~
alignmgr.c:5865:10: warning: ‘sip_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5865 |    while (sip && !done)
      |          ^
alignmgr.c:5845:18: note: ‘sip_head’ was declared here
 5845 |    SeqIdPtr      sip_head;
      |                  ^~~~~~~~
alignmgr.c:5881:16: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5881 |          while (sip_tmp != NULL && !here)
      |                ^
alignmgr.c:5846:18: note: ‘sip_tmp’ was declared here
 5846 |    SeqIdPtr      sip_tmp;
      |                  ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aliparse.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/aliparse.h:12,
                 from aliparse.c:9:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
aliparse.c: In function ‘s_IsInterleaved’:
aliparse.c:929:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  929 |   (s_configInfo.useMaybes == FALSE) &&
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
  930 |   (seqLinePtr->maybe == FALSE))
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~       
aliparse.c:823:20: warning: variable ‘isMaybe’ set but not used [-Wunused-but-set-variable]
  823 |   Boolean          isMaybe;
      |                    ^~~~~~~
aliparse.c: In function ‘s_ProcessInterId’:
aliparse.c:1000:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1000 |   ErrInfoPtr  errPtr;
      |               ^~~~~~
aliparse.c: In function ‘s_ProcessInterSeq’:
aliparse.c:1090:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1090 |   ErrInfoPtr  errPtr = NULL;
      |               ^~~~~~
aliparse.c: In function ‘s_AnalyzeInterleaved’:
aliparse.c:1193:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1193 |        (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c: In function ‘s_ProcessContigId’:
aliparse.c:1385:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1385 |   ErrInfoPtr     errPtr;
      |                  ^~~~~~
aliparse.c: In function ‘s_ProcessContigSeq’:
aliparse.c:1476:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1476 |   ErrInfoPtr     errPtr;
      |                  ^~~~~~
aliparse.c: In function ‘s_AnalyzeContiguous’:
aliparse.c:1603:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1603 |        (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c: In function ‘s_CheckContext’:
aliparse.c:2150:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2150 |     (seqLinePtr->maybe == TRUE) &&
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
 2151 |     (s_configInfo.useMaybes == TRUE))
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c:2131:20: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 2131 |   ErrInfoPtr       errPtr;
      |                    ^~~~~~
aliparse.c: In function ‘PrintOutMultAlign’:
aliparse.c:3161:10: warning: statement with no effect [-Wunused-value]
 3161 |          for (d; d<spacer; d++)
      |          ^~~
aliparse.c: In function ‘ALI_ConvertToNCBIData’:
aliparse.c:3227:17: warning: variable ‘sdp’ set but not used [-Wunused-but-set-variable]
 3227 |    SeqDescrPtr  sdp;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from aliparse.c:9:
aliparse.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
aliparse.c:57:18: warning: ‘s_SegCompare’ declared ‘static’ but never defined [-Wunused-function]
   57 | static int       s_SegCompare(const void *i,
      |                  ^~~~~~~~~~~~
aliparse.c:3186:13: warning: ‘PrintOutSegs’ defined but not used [-Wunused-function]
 3186 | static void PrintOutSegs(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~
aliparse.c:3130:13: warning: ‘PrintOutMultAlign’ defined but not used [-Wunused-function]
 3130 | static void PrintOutMultAlign(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~
aliparse.c:449:13: warning: ‘s_FreeRowList’ defined but not used [-Wunused-function]
  449 | static void s_FreeRowList (ValNodePtr rowList)
      |             ^~~~~~~~~~~~~
aliparse.c: In function ‘s_ProcessMaybes’:
aliparse.c:696:21: warning: ‘lastSeqPart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  696 |   lastSeqPart->next = newSeqPart;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/aliparse.h:12,
                 from aliparse.c:9:
../include/ncbistr.h:337:19: warning: ‘currentIdStr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  337 | #define StringCmp Nlm_StringCmp
      |                   ^~~~~~~~~~~~~
aliparse.c:631:18: note: ‘currentIdStr’ was declared here
  631 |   CharPtr        currentIdStr;
      |                  ^~~~~~~~~~~~
aliparse.c: In function ‘Ali_Read’:
aliparse.c:1355:16: warning: ‘previousLength’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1355 |       errPtr = Ali_AddError (&(fileInfoPtr->errors),ERR_SEQ_LENGTH_MISMATCH,
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1356 |         previousLength,
      |         ~~~~~~~~~~~~~~~
 1357 |         s_configInfo.declaredInfo.seqLength);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c:1154:20: note: ‘previousLength’ was declared here
 1154 |   Int4             previousLength;
      |                    ^~~~~~~~~~~~~~
aliparse.c:927:18: warning: ‘seqLinePtr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  927 |    if (seqLinePtr->sequence != NULL)
      |        ~~~~~~~~~~^~~~~~~~~~
aliparse.c:820:20: note: ‘seqLinePtr’ was declared here
  820 |   SeqLineInfoPtr   seqLinePtr;
      |                    ^~~~~~~~~~
aliparse.c:748:3: warning: ‘cLineType’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  748 |   fprintf(stderr,"%04d: SEQUENCE[%c] : %s\n",
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  749 |    seqLinePtr->rowNum,
      |    ~~~~~~~~~~~~~~~~~~~
  750 |    cLineType,
      |    ~~~~~~~~~~
  751 |    seqLinePtr->sequence);
      |    ~~~~~~~~~~~~~~~~~~~~~
aliparse.c:723:20: note: ‘cLineType’ was declared here
  723 |   Char             cLineType;
      |                    ^~~~~~~~~
aliparse.c: In function ‘ALI_ConvertToNCBIData’:
aliparse.c:3276:4: warning: ‘sep_new’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3276 |    SeqAlignAddInSeqEntry (sep_head, sanp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aliread.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from aliread.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from aliread.c:6:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignval.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignval.c: In function ‘ValidateSeqlengthInDenseSeg’:
alignval.c:1267:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1267 |               if(stptrtemp[j+i*aligndim]+lenptrtemp[i]>bslen)
      |                 ^
alignval.c: In function ‘PercentStringMatch’:
alignval.c:1579:32: warning: variable ‘max_len’ set but not used [-Wunused-but-set-variable]
 1579 |   Int4 len1, len2, min_len, k, max_len;
      |                                ^~~~~~~
alignval.c: In function ‘CheckAlnSeqLens’:
alignval.c:2004:12: warning: variable ‘aln_len’ set but not used [-Wunused-but-set-variable]
 2004 |   Int4     aln_len, start, stop;
      |            ^~~~~~~
alignval.c: In function ‘ValidateSeqAlign’:
alignval.c:2125:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable]
 2125 |   MsgAnswer    ans;
      |                ^~~
alignval.c: In function ‘GetAlignmentColumnPercentIdentities’:
alignval.c:2511:14: warning: variable ‘num_match’ set but not used [-Wunused-but-set-variable]
 2511 |   Int4       num_match;
      |              ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from alignval.c:57:
alignval.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignval.c:2002:13: warning: ‘CheckAlnSeqLens’ defined but not used [-Wunused-function]
 2002 | static void CheckAlnSeqLens (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~
alignval.c:1560:16: warning: ‘IsSipContainedInStdseg’ defined but not used [-Wunused-function]
 1560 | static Boolean IsSipContainedInStdseg(SeqIdPtr sip, StdSegPtr ssp)
      |                ^~~~~~~~~~~~~~~~~~~~~~
alignval.c:602:13: warning: ‘delete_bioseqs’ defined but not used [-Wunused-function]
  602 | static void delete_bioseqs (ValNodePtr ids, Uint2 entityID)
      |             ^~~~~~~~~~~~~~
alignval.c: In function ‘ValMessage’:
alignval.c:465:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=]
  465 |       sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence.  Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3);
      |                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignval.c:448:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=]
  448 |       sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence.  Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3);
      |                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil1.c: In function ‘GeneExtendFunc’:
sqnutil1.c:2012:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 2012 |   GeneRefPtr     grp;
      |                  ^~~
sqnutil1.c: In function ‘ParseAnticodon’:
sqnutil1.c:3494:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 3494 |   Uint1      strand;
      |              ^~~~~~
sqnutil1.c: In function ‘ParseCodeBreak’:
sqnutil1.c:3617:17: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 3617 |   Uint1         strand;
      |                 ^~~~~~
sqnutil1.c: In function ‘CleanUpPubdescAuthors’:
sqnutil1.c:9093:20: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 9093 |   ValNodePtr PNTR  prev;
      |                    ^~~~
sqnutil1.c: In function ‘FixWrongFuzzOnPlusStrand’:
sqnutil1.c:11948:15: warning: unused variable ‘spp’ [-Wunused-variable]
11948 |   SeqPntPtr   spp;
      |               ^~~
sqnutil1.c: In function ‘FixWrongFuzzOnMinusStrand’:
sqnutil1.c:12007:15: warning: unused variable ‘spp’ [-Wunused-variable]
12007 |   SeqPntPtr   spp;
      |               ^~~
sqnutil1.c: In function ‘ConsolidateBioSourceNotes’:
sqnutil1.c:13250:21: warning: variable ‘note_mod’ set but not used [-Wunused-but-set-variable]
13250 |   OrgModPtr    mod, note_mod;
      |                     ^~~~~~~~
sqnutil1.c:13249:21: warning: variable ‘note_ssp’ set but not used [-Wunused-but-set-variable]
13249 |   SubSourcePtr ssp, note_ssp;
      |                     ^~~~~~~~
sqnutil1.c: In function ‘RemoveUnnecessaryGeneXrefs’:
sqnutil1.c:15059:24: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
15059 |   Int2                 count;
      |                        ^~~~~
sqnutil1.c: In function ‘LinkTwoFeatures’:
sqnutil1.c:17930:25: warning: variable ‘prev_xref’ set but not used [-Wunused-but-set-variable]
17930 |   SeqFeatXrefPtr  xref, prev_xref, next_xref;
      |                         ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil1.c:63:
sqnutil1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil1.c:10386:16: warning: ‘CleanUpSgml’ defined but not used [-Wunused-function]
10386 | static CharPtr CleanUpSgml (
      |                ^~~~~~~~~~~
sqnutil1.c:10272:13: warning: ‘SortGoTermsSfp’ defined but not used [-Wunused-function]
10272 | static void SortGoTermsSfp (
      |             ^~~~~~~~~~~~~~
sqnutil1.c:7405:16: warning: ‘IsStringSingleToken’ defined but not used [-Wunused-function]
 7405 | static Boolean IsStringSingleToken (CharPtr str)
      |                ^~~~~~~~~~~~~~~~~~~
sqnutil1.c:4942:13: warning: ‘CleanupConsSplice’ defined but not used [-Wunused-function]
 4942 | static void CleanupConsSplice (GBQualPtr gbq)
      |             ^~~~~~~~~~~~~~~~~
sqnutil1.c:2007:16: warning: ‘GeneExtendFunc’ defined but not used [-Wunused-function]
 2007 | static Boolean GeneExtendFunc (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil2.c: In function ‘FindResidueByName’:
sqnutil2.c:5223:11: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
 5223 |   Uint1   last;
      |           ^~~~
sqnutil2.c: In function ‘ReadFeatureTableEx’:
sqnutil2.c:7254:18: warning: variable ‘isnote’ set but not used [-Wunused-but-set-variable]
 7254 |   Boolean        isnote;
      |                  ^~~~~~
sqnutil2.c:7246:18: warning: variable ‘endsinspace’ set but not used [-Wunused-but-set-variable]
 7246 |   Boolean        endsinspace;
      |                  ^~~~~~~~~~~
sqnutil2.c: In function ‘SeqEntryCopyReplace’:
sqnutil2.c:9270:8: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
 9270 |  Uint1 type = 0;
      |        ^~~~
sqnutil2.c: In function ‘StreamingReadBioseq’:
sqnutil2.c:10095:10: warning: variable ‘level’ set but not used [-Wunused-but-set-variable]
10095 |     Int2 level;
      |          ^~~~~
sqnutil2.c: In function ‘StreamAsnForDescriptors’:
sqnutil2.c:10328:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
10328 |     while (rval = StreamingReadSeqEntry (aip, sp, &sr)) {
      |            ^~~~
sqnutil2.c: In function ‘WriteAsnWithReplacedDescriptors’:
sqnutil2.c:10749:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
10749 |     while (rval = StreamingReadWriteSeqEntry(desc_stream_list, aip_in, aip_out, sp)) {
      |            ^~~~
sqnutil2.c: In function ‘ReadFeatureTableFile’:
sqnutil2.c:11700:18: warning: variable ‘begin’ set but not used [-Wunused-but-set-variable]
11700 |   Int4           begin;
      |                  ^~~~~
sqnutil2.c: In function ‘ReadFastaOnly’:
sqnutil2.c:11894:18: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable]
11894 |   Char           seqid [2048];
      |                  ^~~~~
sqnutil2.c: In function ‘ReadDeltaFastaWithEmptyDefline’:
sqnutil2.c:12446:29: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable]
12446 |   Char         line [4096], seqid [2048];
      |                             ^~~~~
sqnutil2.c: In function ‘SortSeqGraphProc’:
sqnutil2.c:13002:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
13002 |   } else if (gip2->right < gip2->right) {
      |                          ^
sqnutil2.c: In function ‘PrintQualityScoresToBuffer’:
sqnutil2.c:13052:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
13052 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil2.c: In function ‘GetScoresbySeqId’:
sqnutil2.c:13461:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
13461 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil2.c: In function ‘RemoveGapsFromDeltaLocation’:
sqnutil2.c:15480:15: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
15480 |   Uint1       strand;
      |               ^~~~~~
sqnutil2.c: In function ‘IsStringInSpanInList’:
sqnutil2.c:16693:11: warning: variable ‘str_val’ set but not used [-Wunused-but-set-variable]
16693 |   Int4    str_val;
      |           ^~~~~~~
sqnutil2.c:16691:27: warning: variable ‘suffix_len’ set but not used [-Wunused-but-set-variable]
16691 |   Int4    prefix_len = 0, suffix_len;
      |                           ^~~~~~~~~~
sqnutil2.c: In function ‘CreateStructuredCommentsFromFile’:
sqnutil2.c:18415:35: warning: variable ‘vnp_h’ set but not used [-Wunused-but-set-variable]
18415 |   ValNodePtr table, header, line, vnp_h, vnp_l, tmp;
      |                                   ^~~~~
sqnutil2.c: In function ‘AlignmentIntervalToString’:
sqnutil2.c:18779:14: warning: variable ‘target_strand’ set but not used [-Wunused-but-set-variable]
18779 |   Uint1      target_strand;
      |              ^~~~~~~~~~~~~
sqnutil2.c:18778:14: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable]
18778 |   Int4       seq_len;
      |              ^~~~~~~
sqnutil2.c: In function ‘AdjustForConsensusSpliceCallback’:
sqnutil2.c:20313:33: warning: variable ‘partial5_last’ set but not used [-Wunused-but-set-variable]
20313 |   Boolean   partial5, partial3, partial5_last, partial3_last, first = TRUE;
      |                                 ^~~~~~~~~~~~~
sqnutil2.c: In function ‘RemoveGIProc’:
sqnutil2.c:20926:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
20926 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sqnutil2.c: In function ‘RemoveBadCodonRecognizedCallback’:
sqnutil2.c:22812:13: warning: variable ‘rcodon’ set but not used [-Wunused-but-set-variable]
22812 |   Uint1     rcodon [4];
      |             ^~~~~~
sqnutil2.c: In function ‘CompareStructuredComment’:
sqnutil2.c:25151:23: warning: variable ‘ovp2’ set but not used [-Wunused-but-set-variable]
25151 |   ObjValNodePtr ovp1, ovp2;
      |                       ^~~~
sqnutil2.c:25151:17: warning: variable ‘ovp1’ set but not used [-Wunused-but-set-variable]
25151 |   ObjValNodePtr ovp1, ovp2;
      |                 ^~~~
sqnutil2.c: In function ‘UniqueAndCountValNodeCS’:
sqnutil2.c:25546:17: warning: variable ‘curr’ set but not used [-Wunused-but-set-variable]
25546 |   ValNodePtr    curr;
      |                 ^~~~
sqnutil2.c: In function ‘PerformArticleQuery’:
sqnutil2.c:25810:20: warning: variable ‘debug_mode’ set but not used [-Wunused-but-set-variable]
25810 |   Boolean          debug_mode = FALSE;
      |                    ^~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil2.c:58:
sqnutil2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil2.c:18065:19: warning: ‘AuthAffilListFree’ defined but not used [-Wunused-function]
18065 | static ValNodePtr AuthAffilListFree (ValNodePtr list)
      |                   ^~~~~~~~~~~~~~~~~
sqnutil2.c:18044:21: warning: ‘AuthAffilNew’ defined but not used [-Wunused-function]
18044 | static AuthAffilPtr AuthAffilNew (CharPtr affil)
      |                     ^~~~~~~~~~~~
sqnutil2.c:16282:19: warning: ‘MakeTranscriptomeIDTokensFromLine’ defined but not used [-Wunused-function]
16282 | static ValNodePtr MakeTranscriptomeIDTokensFromLine (CharPtr line)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c:16188:13: warning: ‘RevCompFeatsOnBioseq’ defined but not used [-Wunused-function]
16188 | static void RevCompFeatsOnBioseq (BioseqPtr bsp)
      |             ^~~~~~~~~~~~~~~~~~~~
sqnutil2.c:8333:16: warning: ‘DoesSeqEntryAccessionMatchList’ defined but not used [-Wunused-function]
 8333 | static Boolean DoesSeqEntryAccessionMatchList (SeqEntryPtr sep, ValNodePtr accn_list)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c:4684:16: warning: ‘IsNonSeqChar’ defined but not used [-Wunused-function]
 4684 | static Boolean IsNonSeqChar (Char ch, Boolean is_prot)
      |                ^~~~~~~~~~~~
sqnutil2.c: In function ‘ReplaceLocalID’:
sqnutil2.c:23605:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 5 and 68 [-Wformat-overflow=]
23605 |   sprintf (tmp, "%s__%d", str, (int) count);
      |                      ^~
sqnutil2.c:23605:17: note: directive argument in the range [-32768, 32767]
23605 |   sprintf (tmp, "%s__%d", str, (int) count);
      |                 ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 72 bytes into a destination of size 70
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘AdjustSeqEntryForConsensusSpliceBioseqCallback’:
sqnutil2.c:20313:48: warning: ‘partial3_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20313 |   Boolean   partial5, partial3, partial5_last, partial3_last, first = TRUE;
      |                                                ^~~~~~~~~~~~~
sqnutil2.c: In function ‘PrintQualityScoresToBuffer’:
sqnutil2.c:13110:54: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 5 and 56 [-Wformat-overflow=]
13110 |   sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title,
      |                                                      ^~~
sqnutil2.c:13110:17: note: directive argument in the range [-2147483647, 2147483647]
13110 |   sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title,
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 32 or more bytes (assuming 93) into a destination of size 84
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil3.c: In function ‘BspLinkCDSmRNAbyOverlap’:
sqnutil3.c:528:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
  528 |   Int2               count;
      |                      ^~~~~
sqnutil3.c: In function ‘CautiousSeqEntryCleanup’:
sqnutil3.c:2178:16: warning: variable ‘taxserver’ set but not used [-Wunused-but-set-variable]
 2178 |   Boolean      taxserver;
      |                ^~~~~~~~~
sqnutil3.c: In function ‘AddGapSeqLit’:
sqnutil3.c:3127:19: warning: unused variable ‘gap_chars’ [-Wunused-variable]
 3127 |   CharPtr         gap_chars = "NNNNNNNNNN"
      |                   ^~~~~~~~~
sqnutil3.c: In function ‘ConvertSegSetsToDeltaSequencesInt’:
sqnutil3.c:3382:26: warning: variable ‘prev_sep’ set but not used [-Wunused-but-set-variable]
 3382 |   SeqEntryPtr   sub_sep, prev_sep, next_sep;
      |                          ^~~~~~~~
sqnutil3.c: In function ‘MakeSequinDataFromAlignmentEx’:
sqnutil3.c:4797:32: warning: variable ‘num_sets’ set but not used [-Wunused-but-set-variable]
 4797 |   Int4        index, curr_seg, num_sets;
      |                                ^~~~~~~~
sqnutil3.c:4791:26: warning: variable ‘salp_last’ set but not used [-Wunused-but-set-variable]
 4791 |   SeqAlignPtr salp_list, salp_last;
      |                          ^~~~~~~~~
sqnutil3.c:4791:15: warning: variable ‘salp_list’ set but not used [-Wunused-but-set-variable]
 4791 |   SeqAlignPtr salp_list, salp_last;
      |               ^~~~~~~~~
sqnutil3.c: In function ‘ConvertContainedCDSToMiscFeat’:
sqnutil3.c:12824:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
12824 |   Uint1      strand;
      |              ^~~~~~
sqnutil3.c: In function ‘OrgNameMatchExceptOldName’:
sqnutil3.c:13713:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
13713 |            || onp2->mgcode != onp2->mgcode
      |                            ^~
sqnutil3.c: In function ‘FindMismatchedCitSubAffiliations’:
sqnutil3.c:19281:14: warning: variable ‘has_seq_submit’ set but not used [-Wunused-but-set-variable]
19281 |   Boolean    has_seq_submit = TRUE;
      |              ^~~~~~~~~~~~~~
sqnutil3.c: In function ‘GetCDSformRNA’:
sqnutil3.c:20267:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
20267 |   Int2 count;
      |        ^~~~~
sqnutil3.c: In function ‘FindTextInFlatfileOncaller’:
sqnutil3.c:22140:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable]
22140 |   Boolean         okay;
      |                   ^~~~
sqnutil3.c: In function ‘CheckForTitleAuthorConflicts’:
sqnutil3.c:23168:14: warning: variable ‘author_conflict’ set but not used [-Wunused-but-set-variable]
23168 |   Boolean    author_conflict = FALSE;
      |              ^~~~~~~~~~~~~~~
sqnutil3.c: In function ‘SortVnpByBspProjectId’:
sqnutil3.c:26956:31: warning: the comparison will always evaluate as ‘true’ for the address of ‘vnp2’ will never be NULL [-Waddress]
26956 |     if (vnp1 != NULL &&& vnp2 != NULL) {
      |                               ^~
sqnutil3.c: In function ‘GetDiscrepancyItemTextEx’:
sqnutil3.c:31033:21: warning: variable ‘special_flag’ set but not used [-Wunused-but-set-variable]
31033 |   Boolean           special_flag = FALSE;
      |                     ^~~~~~~~~~~~
sqnutil3.c: In function ‘CollectionDateIsInTheFuture’:
sqnutil3.c:34586:20: warning: variable ‘time’ set but not used [-Wunused-but-set-variable]
34586 |   CharPtr     str, time;
      |                    ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil3.c:62:
sqnutil3.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil3.c: In function ‘FillInMissingTraces’:
sqnutil3.c:35189:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
35189 |     system (cmmd);
      |     ^~~~~~~~~~~~~
At top level:
sqnutil3.c:36777:13: warning: ‘TestLatLonFormatting’ defined but not used [-Wunused-function]
36777 | static void TestLatLonFormatting (FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~
sqnutil3.c:34406:22: warning: ‘BetterDateFree’ defined but not used [-Wunused-function]
34406 | static BetterDatePtr BetterDateFree (BetterDatePtr dp)
      |                      ^~~~~~~~~~~~~~
sqnutil3.c:33998:16: warning: ‘GetColon’ defined but not used [-Wunused-function]
33998 | static CharPtr GetColon (CharPtr str)
      |                ^~~~~~~~
sqnutil3.c:17224:24: warning: ‘IntervalPairFree’ defined but not used [-Wunused-function]
17224 | static IntervalPairPtr IntervalPairFree (IntervalPairPtr i)
      |                        ^~~~~~~~~~~~~~~~
sqnutil3.c:10883:16: warning: ‘IsMitochondrionBioseq’ defined but not used [-Wunused-function]
10883 | static Boolean IsMitochondrionBioseq(BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘LinkCDSmRNAbyLabelAndLocationCallback’:
sqnutil3.c:876:23: warning: ‘best_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  876 |             } else if (diff < best_diff) {
      |                       ^
sqnutil3.c: In function ‘FillInMissingTraces’:
sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
35188 |     sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out);
      |                           ^~                        ~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
35188 |     sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out);
      |                           ^~                        ~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘tRNASameStrandBioseqCallback’:
sqnutil3.c:16769:8: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16769 |     if (strand == Seq_strand_minus) {
      |        ^
sqnutil3.c: In function ‘CheckForDivConflicts’:
sqnutil3.c:8132:15: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8132 |          else ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQFEAT, sfp);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c:8131:13: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8131 |             ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQDESC, sdp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘FindMismatchedComments’:
sqnutil3.c:26612:47: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
26612 |     sprintf (fmt, sub_fmt, (CharPtr) sdp->data.ptrvalue);
      |                                      ~~~~~~~~~^~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil4.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil4.c: In function ‘ListClauses’:
sqnutil4.c:8566:43: warning: variable ‘twobefore’ set but not used [-Wunused-but-set-variable]
 8566 |   FeatureClausePtr thisclause, onebefore, twobefore, oneafter, twoafter;
      |                                           ^~~~~~~~~
sqnutil4.c: In function ‘SmashOneTallClause’:
sqnutil4.c:9900:20: warning: variable ‘subclause_featlist’ set but not used [-Wunused-but-set-variable]
 9900 |   ValNodePtr       subclause_featlist;
      |                    ^~~~~~~~~~~~~~~~~~
sqnutil4.c: In function ‘GetFeatureClauseForSeg’:
sqnutil4.c:10787:21: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
10787 |   Int4              start, stop;
      |                     ^~~~~
sqnutil4.c: In function ‘RemoveAutodefObjectsForDesc’:
sqnutil4.c:13618:18: warning: unused variable ‘bssp’ [-Wunused-variable]
13618 |     BioseqSetPtr bssp;
      |                  ^~~~
sqnutil4.c:13617:15: warning: unused variable ‘bsp’ [-Wunused-variable]
13617 |     BioseqPtr bsp;
      |               ^~~
sqnutil4.c: In function ‘ConvertProtToImpFunc’:
sqnutil4.c:15072:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
15072 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil4.c: In function ‘ExtraCDSCreationActions’:
sqnutil4.c:15989:28: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
15989 |   SeqEntryPtr        psep, nsep;
      |                            ^~~~
sqnutil4.c: In function ‘TESTDisplayQualCombo’:
sqnutil4.c:17099:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
17099 |   Int4             val;
      |                    ^~~
sqnutil4.c: In function ‘ConvertCDSToMatPeptideForOverlappingCDS’:
sqnutil4.c:18589:15: warning: variable ‘crp’ set but not used [-Wunused-but-set-variable]
18589 |   CdRegionPtr crp;
      |               ^~~
sqnutil4.c: In function ‘AddNewUniqueAnnotations’:
sqnutil4.c:18780:39: warning: variable ‘sap_tmp_next’ set but not used [-Wunused-but-set-variable]
18780 |   SeqAnnotPtr sap, sap_next, sap_tmp, sap_tmp_next, sap_copy, last_sap;
      |                                       ^~~~~~~~~~~~
sqnutil4.c: In function ‘AssignBioseqToLineageGroup’:
sqnutil4.c:19443:27: warning: variable ‘vnp_last’ set but not used [-Wunused-but-set-variable]
19443 |   ValNodePtr   list, vnp, vnp_last = NULL;
      |                           ^~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from sqnutil4.c:58:
sqnutil4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sqnutil4.c:64:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sqnutil4.c:17248:13: warning: ‘TESTDisplayList’ defined but not used [-Wunused-function]
17248 | static void TESTDisplayList (ValNodePtr new_list)
      |             ^~~~~~~~~~~~~~~
sqnutil4.c:17219:19: warning: ‘ExpandOneComboListUsingAllPresentQuals’ defined but not used [-Wunused-function]
17219 | static ValNodePtr ExpandOneComboListUsingAllPresentQuals (QualComboPtr q)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil4.c:16930:16: warning: ‘RemoveFieldFromUniqBioSrcGrpList’ defined but not used [-Wunused-function]
16930 | static Boolean RemoveFieldFromUniqBioSrcGrpList (ValNodePtr list, FieldTypePtr field)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil4.c:10029:19: warning: ‘RemoveAllButLastCDS’ defined but not used [-Wunused-function]
10029 | static ValNodePtr RemoveAllButLastCDS (
      |                   ^~~~~~~~~~~~~~~~~~~
sqnutil4.c:9998:13: warning: ‘SmashTallClauses’ defined but not used [-Wunused-function]
 9998 | static void SmashTallClauses (
      |             ^~~~~~~~~~~~~~~~
sqnutil4.c:9834:13: warning: ‘RemoveFeats’ defined but not used [-Wunused-function]
 9834 | static void RemoveFeats (
      |             ^~~~~~~~~~~
sqnutil4.c:5211:13: warning: ‘CountFeatures’ defined but not used [-Wunused-function]
 5211 | static Int4 CountFeatures (
      |             ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF subutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from subutil.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
subutil.c: In function ‘AddSeqLitToBioseq’:
subutil.c:769:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  769 |     ValNodePtr vnp;
      |                ^~~
subutil.c: In function ‘AddReferenceToSegmentedEntry’:
subutil.c:1163:22: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 1163 |     SeqEntryPtr tmp, prev;
      |                      ^~~~
subutil.c: In function ‘GetDNAConv’:
subutil.c:1624:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1624 |        dnaconv[*ptr] = *ptr;
      |                ^~~~
subutil.c: In function ‘GetProteinConv’:
subutil.c:1646:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1646 |        protconv[*ptr] = *ptr;
      |                 ^~~~
subutil.c: In function ‘AddBasesToByteStore’:
subutil.c:1669:26: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1669 |         residue = dnaconv[ch];
      |                          ^
subutil.c: In function ‘AddAAsToByteStore’:
subutil.c:1700:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1700 |         residue = aaconv[ch];
      |                         ^
subutil.c: In function ‘CitArtBuild’:
subutil.c:2683:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 2683 |     ValNodePtr vnp, tmp;
      |                     ^~~
subutil.c: In function ‘MakeRNAFeature’:
subutil.c:3639:29: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 3639 |             if (AA_for_tRNA != '\0')
      |                             ^~
subutil.c:3639:17: note: did you mean to dereference the pointer?
 3639 |             if (AA_for_tRNA != '\0')
      |                 ^
At top level:
subutil.c:3546:20: warning: ‘TranslateCdRegionNew’ defined but not used [-Wunused-function]
 3546 | static SeqEntryPtr TranslateCdRegionNew (
      |                    ^~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF edutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/edutil.h:188,
                 from edutil.c:365:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
edutil.c: In function ‘SeqLocsToDeltaSeqs’:
edutil.c:795:14: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable]
  795 |     SeqIdPtr sip;
      |              ^~~
edutil.c: In function ‘SeqLocCopyPart’:
edutil.c:2243:13: warning: variable ‘done’ set but not used [-Wunused-but-set-variable]
 2243 |     Boolean done, started, wasa_null, hada_null;
      |             ^~~~
edutil.c: In function ‘IndexedSeqFeatsCopy’:
edutil.c:2400:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable]
 2400 |     ValNodePtr region;
      |                ^~~~~~
edutil.c: In function ‘SeqFeatsCopy’:
edutil.c:2504:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable]
 2504 |     ValNodePtr region;
      |                ^~~~~~
edutil.c: In function ‘SeqLocInsert’:
edutil.c:3686:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 3686 |     Int4 diff, numpnt, i, tpos;
      |          ^~~~
edutil.c: In function ‘SeqEdRecreateDeletedFeats’:
edutil.c:4212:19: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 4212 |   SeqFeatPtr      sfp;
      |                   ^~~
edutil.c: In function ‘SeqEdSeqLocInsert’:
edutil.c:4512:8: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 4512 |   Int4 diff, numpnt, i, tpos;
      |        ^~~~
edutil.c: In function ‘SeqEdSeqLocDelete’:
edutil.c:5069:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 5069 |     Int4 diff;
      |          ^~~~
edutil.c: In function ‘SeqEdInsertAdjustFeat’:
edutil.c:5300:7: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 5300 |       && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c: In function ‘SeqEdDeleteFromBsp’:
edutil.c:6485:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 6485 |           && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c:6548:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 6548 |           && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c:6437:21: warning: variable ‘merge_mode’ set but not used [-Wunused-but-set-variable]
 6437 |   Boolean           merge_mode;
      |                     ^~~~~~~~~~
edutil.c:6428:21: warning: variable ‘feats_altered’ set but not used [-Wunused-but-set-variable]
 6428 |   Boolean           feats_altered = FALSE;
      |                     ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff1.c: In function ‘asn2ff_print’:
asn2ff1.c:289:17: warning: unused variable ‘dsp’ [-Wunused-variable]
  289 |  DescrStructPtr dsp = NULL;
      |                 ^~~
asn2ff1.c: In function ‘Asn2ffJobCreate’:
asn2ff1.c:351:18: warning: unused variable ‘itemID’ [-Wunused-variable]
  351 |  Uint4           itemID = 0;
      |                  ^~~~~~
asn2ff1.c: In function ‘SeqEntryToEntrez’:
asn2ff1.c:498:15: warning: unused variable ‘slp’ [-Wunused-variable]
  498 |  SeqLocPtr    slp = NULL;
      |               ^~~
asn2ff1.c: In function ‘SeqLocToFlat’:
asn2ff1.c:1518:19: warning: unused variable ‘itemID’ [-Wunused-variable]
 1518 |  Uint4            itemID=0;
      |                   ^~~~~~
asn2ff1.c: In function ‘asn2ff_setup’:
asn2ff1.c:1579:12: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
 1579 |  BioseqPtr bsp;
      |            ^~~
asn2ff1.c: In function ‘PrintStatusLine’:
asn2ff1.c:2197:15: warning: unused variable ‘ptr’ [-Wunused-variable]
 2197 |  CharPtr   u, ptr=NULL;
      |               ^~~
asn2ff1.c: In function ‘asn2gb_setup’:
asn2ff1.c:2403:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2403 |   if (ajp->genome_view && gbp->map == FALSE || ajp->contig_view) {
At top level:
asn2ff1.c:2189:13: warning: ‘PrintStatusLine’ defined but not used [-Wunused-function]
 2189 | static void PrintStatusLine(Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |             ^~~~~~~~~~~~~~~
asn2ff1.c:2171:16: warning: ‘find_user_object’ defined but not used [-Wunused-function]
 2171 | static Boolean find_user_object(BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~
asn2ff1.c:816:19: warning: ‘SeqEntryToLinkStrEx’ defined but not used [-Wunused-function]
  816 | static LinkStrPtr SeqEntryToLinkStrEx(Asn2ffJobPtr ajp, SeqEntryPtr sep, LinkStrPtr lsp, Uint1 format)
      |                   ^~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff1.c:45:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff1.c: In function ‘print_taxinfo’:
asn2ff1.c:4356:19: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 4356 |   sprintf(tmp, "%d", gcode);
      |                   ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff1.c: In function ‘asn2embl_setup’:
asn2ff1.c:2754:7: warning: ‘max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2754 |    if (max == index+1) {
      |       ^
asn2ff1.c: In function ‘asn2gp_setup’:
asn2ff1.c:2942:4: warning: ‘feat_num’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2942 |    for (index=0; index < feat_num; index++) {
      |    ^~~
asn2ff1.c: In function ‘SeqEntryToGBFlatNoSeq’:
asn2ff1.c:1292:15: warning: ‘rsult’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1292 |     Boolean   rsult;
      |               ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from asn2ff2.c:216:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff2.c: In function ‘GetStrForBankit’:
asn2ff2.c:518:9: warning: unused variable ‘i’ [-Wunused-variable]
  518 |  Int2   i=0, ptrlen = 0;
      |         ^
asn2ff2.c: In function ‘GetCommentByChoice’:
asn2ff2.c:769:34: warning: unused variable ‘string’ [-Wunused-variable]
  769 |  CharPtr buf = NULL, ptr = NULL, string=NULL, new_string=NULL, str=NULL;
      |                                  ^~~~~~
asn2ff2.c: In function ‘GP_GetSeqDescrComms’:
asn2ff2.c:1163:10: warning: unused variable ‘got_comment’ [-Wunused-variable]
 1163 |  Boolean got_comment=FALSE;
      |          ^~~~~~~~~~~
asn2ff2.c: At top level:
asn2ff2.c:1358:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
 1358 | static ChoicePID(SeqIdPtr sid)
      |        ^~~~~~~~~
asn2ff2.c: In function ‘GetGibbsqCommentLength’:
asn2ff2.c:1600:7: warning: unused variable ‘gibbsq’ [-Wunused-variable]
 1600 |  Int4 gibbsq=0, total;
      |       ^~~~~~
asn2ff2.c: In function ‘GatherDescrByChoice’:
asn2ff2.c:1864:8: warning: variable ‘bspID’ set but not used [-Wunused-but-set-variable]
 1864 |  Uint2 bspID;
      |        ^~~~~
At top level:
asn2ff2.c:1190:16: warning: ‘GetSPBlock’ defined but not used [-Wunused-function]
 1190 | static CharPtr GetSPBlock (Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |                ^~~~~~~~~~
asn2ff2.c:680:16: warning: ‘GetEvidence’ defined but not used [-Wunused-function]
  680 | static CharPtr GetEvidence(Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |                ^~~~~~~~~~~
asn2ff2.c:232:16: warning: ‘has_comment’ defined but not used [-Wunused-variable]
  232 | static Boolean has_comment;
      |                ^~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff2.c:218:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff2.c: In function ‘GetCommentByChoice’:
asn2ff2.c:829:8: warning: ‘is_other’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  829 |     if (is_other == TRUE  && mfp->completeness) {
      |        ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff3.c: In function ‘PutGeneFirst’:
asn2ff3.c:1073:26: warning: unused variable ‘qual_temp’ [-Wunused-variable]
 1073 |  GBQualPtr gbqual, qual, qual_temp=NULL, qual_gene=NULL;
      |                          ^~~~~~~~~
asn2ff3.c:1072:10: warning: unused variable ‘still_looking’ [-Wunused-variable]
 1072 |  Boolean still_looking=TRUE;
      |          ^~~~~~~~~~~~~
asn2ff3.c: In function ‘mRNAEvidenceComment’:
asn2ff3.c:1157:9: warning: unused variable ‘Locus_id’ [-Wunused-variable]
 1157 |  Int4   Locus_id = 0;
      |         ^~~~~~~~
asn2ff3.c: In function ‘Add_gene_id’:
asn2ff3.c:2717:24: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘Nlm_VoidPtr’ {aka ‘void *’} [-Wformat=]
 2717 |  sprintf(val, "GeneID:%s", vnp->data.ptrvalue);
      |                       ~^   ~~~~~~~~~~~~~~~~~~
      |                        |            |
      |                        char *       Nlm_VoidPtr {aka void *}
      |                       %p
asn2ff3.c: In function ‘Add_trid’:
asn2ff3.c:3142:20: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3142 |    sprintf(buf, "%ld", sip->data.intvalue);
      |                  ~~^   ~~~~~~~~~~~~~~~~~~
      |                    |            |
      |                    long int     Nlm_Int8 {aka long long int}
      |                  %lld
asn2ff3.c:3123:9: warning: unused variable ‘gi’ [-Wunused-variable]
 3123 |  BIG_ID gi = -1;
      |         ^~
asn2ff3.c: In function ‘AddPID’:
asn2ff3.c:3185:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3185 |     sprintf(buf, "%ld", sip->data.intvalue);
      |                   ~~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     long int     Nlm_Int8 {aka long long int}
      |                   %lld
At top level:
asn2ff3.c:2702:13: warning: ‘Add_gene_id’ defined but not used [-Wunused-function]
 2702 | static void Add_gene_id (GeneStructPtr gsp, SeqFeatPtr sfp_out)
      |             ^~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff3.c:39:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
asn2ff3.c: In function ‘Add_dbxref’:
../include/ncbimem.h:232:23: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
asn2ff3.c:216:10: note: ‘val’ was declared here
  216 |  CharPtr val;
      |          ^~~
asn2ff3.c: In function ‘GettRNAaa’:
asn2ff3.c:1618:14: warning: ‘seq_code’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1618 |   if ((table=SeqCodeTableFind (seq_code)) != NULL)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
asn2ff3.c: In function ‘mRNAEvidenceComment’:
../include/ncbistr.h:331:19: warning: ‘ne_name’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
asn2ff3.c:1153:32: note: ‘ne_name’ was declared here
 1153 |  CharPtr   method = NULL, ptr, ne_name;
      |                                ^~~~~~~
asn2ff3.c: In function ‘ConvertToNAImpFeat’:
asn2ff3.c:2254:23: warning: ‘%ld’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=]
 2254 |     sprintf(buf_ptr, "%ld", (long) (cdr->frame));
      |                       ^~~
asn2ff3.c:2254:22: note: directive argument in the range [1, 255]
 2254 |     sprintf(buf_ptr, "%ld", (long) (cdr->frame));
      |                      ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff4.c: In function ‘FlatLocPoint’:
asn2ff4.c:437:15: warning: variable ‘order’ set but not used [-Wunused-but-set-variable]
  437 |  static Uint1 order[NUM_SEQID];
      |               ^~~~~
asn2ff4.c: In function ‘do_FlatLoc’:
asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1122 |    if ( ! FlatVirtLoc( bsp, slp))
      |       ^
asn2ff4.c: At top level:
asn2ff4.c:1347:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
 1347 | static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
      |        ^~~~~~~~~~
asn2ff4.c: In function ‘CreateImpFeatFromProt’:
asn2ff4.c:1659:14: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 1659 |  GeneRefPtr  grp;
      |              ^~~
asn2ff4.c: In function ‘MatchNAGeneToFeat’:
asn2ff4.c:2196:17: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable]
 2196 |  NoteStructPtr  nsp; /* UNUSED */
      |                 ^~~
asn2ff4.c: In function ‘MatchAAGeneToFeat’:
asn2ff4.c:2367:18: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable]
 2367 |  NoteStructPtr   nsp; /* UNUSED */
      |                  ^~~
asn2ff4.c: In function ‘SortOrganizeFeat’:
asn2ff4.c:2457:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2457 |  if (ofp == NULL)
      |  ^~
asn2ff4.c:2459:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2459 |   if (ofp->sfpListsize > 0 && ofp->sortListsize < ofp->sfpListsize) {
      |   ^~
asn2ff4.c: In function ‘OrganizeSeqFeat’:
asn2ff4.c:2578:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2578 |  if (ajp->ignore_top)
      |  ^~
asn2ff4.c:2580:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2580 |   gsc.seglevels = 1;
      |   ^~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff4.c:273:
At top level:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff4.c: In function ‘CheckNewSfpLoc’:
asn2ff4.c:1767:7: warning: ‘slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1767 |   if (SeqLocLen(slp) <= BioseqGetLen(bsp)) {
      |       ^~~~~~~~~~~~~~
asn2ff4.c: In function ‘CreateImpFeatFromProt’:
asn2ff4.c:1723:18: warning: ‘%d’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=]
 1723 |    sprintf(buf, "%d", cdr->frame);
      |                  ^~
asn2ff4.c:1723:17: note: directive argument in the range [1, 255]
 1723 |    sprintf(buf, "%d", cdr->frame);
      |                 ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff5.c: In function ‘format_cit_sub’:
asn2ff5.c:1023:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1023 |             format == EMBLPEPT_FMT && afp->choice == 1)
      |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
asn2ff5.c:926:41: warning: variable ‘need_space’ set but not used [-Wunused-but-set-variable]
  926 |   Boolean need_comma = FALSE, /*UNUSED*/need_space = TRUE;
      |                                         ^~~~~~~~~~
asn2ff5.c: In function ‘format_thesis’:
asn2ff5.c:1213:20: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable]
 1213 |  Boolean /*UNUSED*/embl_format = FALSE;
      |                    ^~~~~~~~~~~
asn2ff5.c: In function ‘format_book’:
asn2ff5.c:1296:10: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable]
 1296 |  Boolean embl_format = FALSE;
      |          ^~~~~~~~~~~
asn2ff5.c: In function ‘format_jourarticle’:
asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1680 |    if (ip->pages != NULL)
      |       ^
asn2ff5.c: In function ‘StripParanthesis’:
asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value]
 2124 |    temp++; *ptr_in++;
      |            ^~~~~~~~~
asn2ff5.c: In function ‘PostARefErrMessage’:
asn2ff5.c:3005:20: warning: variable ‘ignore_this’ set but not used [-Wunused-but-set-variable]
 3005 |  Boolean /*UNUSED*/ignore_this, submit=FALSE, error;
      |                    ^~~~~~~~~~~
asn2ff5.c: At top level:
asn2ff5.c:188:26: warning: ‘GetSubmitterName’ declared ‘static’ but never defined [-Wunused-function]
  188 | static CharPtr /*UNUSED*/GetSubmitterName PROTO ((Uint1 format, ValNodePtr pub));
      |                          ^~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff5.c:177:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff5.c: In function ‘CheckPubs’:
asn2ff5.c:2772:5: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2772 |     PostARefErrMessage (ajp, bsp, psp, NULL, status, NULL);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c: In function ‘FlatJournal’:
asn2ff5.c:1121:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 1121 |    sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                   ^~~
asn2ff5.c:1121:16: note: directive argument in the range [1, 2147483647]
 1121 |    sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c:1115:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 1115 |    sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                   ^~~
asn2ff5.c:1115:16: note: directive argument in the range [1, 2147483647]
 1115 |    sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                ^~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c:1140:24: warning: ‘afp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1140 |  if (ap == NULL || afp == NULL) {
      |                        ^
asn2ff5.c:1051:11: note: ‘afp’ was declared here
 1051 |  AffilPtr afp;
      |           ^~~
In file included from ../include/ncbi.h:62,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
../include/ncbistr.h:349:20: warning: ‘temp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  349 | #define StringMove Nlm_StringMove
      |                    ^~~~~~~~~~~~~~
asn2ff5.c:1946:23: note: ‘temp’ was declared here
 1946 |   CharPtr affil=NULL, temp, dup_pages=NULL, retval=NULL;
      |                       ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff6.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff6.c: In function ‘AddGBQual’:
asn2ff6.c:1327:18: warning: variable ‘note’ set but not used [-Wunused-but-set-variable]
 1327 |  GBQualPtr curq, note = NULL;
      |                  ^~~~
asn2ff6.c: In function ‘FlatOrganelle’:
asn2ff6.c:1483:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1483 |      if (! retval )
      |      ^~
asn2ff6.c:1486:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1486 |       break;
      |       ^~~~~
asn2ff6.c: In function ‘BioseqGetGBDivCodeEx’:
asn2ff6.c:1700:23: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 1700 |  Int2 tech, /*UNUSED*/diff, retval = 0;
      |                       ^~~~
asn2ff6.c: In function ‘GR_PrintPubs’:
asn2ff6.c:2297:41: warning: unused variable ‘stop’ [-Wunused-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |                                         ^~~~
asn2ff6.c:2297:32: warning: unused variable ‘start’ [-Wunused-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |                                ^~~~~
asn2ff6.c:2297:13: warning: variable ‘pmid’ set but not used [-Wunused-but-set-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |             ^~~~
asn2ff6.c:2296:10: warning: unused variable ‘descr’ [-Wunused-variable]
 2296 |  CharPtr descr = NULL;
      |          ^~~~~
asn2ff6.c: In function ‘ValidateLocus’:
asn2ff6.c:2786:17: warning: variable ‘base_locus_max’ set but not used [-Wunused-but-set-variable]
 2786 |  Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
      |                 ^~~~~~~~~~~~~~
asn2ff6.c: In function ‘ValidateOtherAccession’:
asn2ff6.c:2886:29: warning: unused variable ‘FiveNum’ [-Wunused-variable]
 2886 |  Boolean FirstLetter=FALSE, FiveNum = FALSE;
      |                             ^~~~~~~
asn2ff6.c:2886:10: warning: unused variable ‘FirstLetter’ [-Wunused-variable]
 2886 |  Boolean FirstLetter=FALSE, FiveNum = FALSE;
      |          ^~~~~~~~~~~
asn2ff6.c: In function ‘AddExtraAccessions’:
asn2ff6.c:3498:20: warning: variable ‘ncbi’ set but not used [-Wunused-but-set-variable]
 3498 |  Boolean /*UNUSED*/ncbi = FALSE;
      |                    ^~~~
At top level:
asn2ff6.c:2883:13: warning: ‘ValidateOtherAccession’ defined but not used [-Wunused-function]
 2883 | static Int2 ValidateOtherAccession(CharPtr new_buf, CharPtr orig_buf)
      |             ^~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from asn2ff6.c:347:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff6.c: In function ‘ValidateLocus’:
asn2ff6.c:2866:33: warning: ‘exp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2866 |    sprintf(buf_ext+num_of_digits-exp, "%ld", (long) num_seg);
      |                                 ^
asn2ff6.c: In function ‘MakeBaseLocusAwp’:
asn2ff6.c:3093:38: warning: ‘num_of_digits’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3093 |  base_locus_max = MAX_LOCUS_NAME_LEN - num_of_digits;
asn2ff6.c: In function ‘GetLocusPartsAwp’:
asn2ff6.c:3449:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3449 |       sprintf(gbp->locus, "%-16s", buf_acc);
      |                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3447:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3447 |       sprintf(gbp->locus, "%-10s", buf_acc);
      |                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3372:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3372 |        sprintf(gbp->locus, "%-16s", buf_acc);
      |                                  ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3370:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3370 |        sprintf(gbp->locus, "%-10s", buf_acc);
      |                                  ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb1.c: In function ‘IsWholeWordSubstr’:
asn2gnb1.c:2202:19: warning: variable ‘right’ set but not used [-Wunused-but-set-variable]
 2202 |     Boolean left, right;
      |                   ^~~~~
asn2gnb1.c: In function ‘s_LocusGetBaseName’:
asn2gnb1.c:2350:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 2350 |     else
      |     ^~~~
asn2gnb1.c:2352:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 2352 |       newLength = segNameLen - deleteChars;
      |       ^~~~~~~~~
asn2gnb1.c: In function ‘DoOneSection’:
asn2gnb1.c:2522:24: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 2522 |   IntAsn2gbSectPtr     iasp;
      |                        ^~~~
asn2gnb1.c:2514:24: warning: variable ‘bkmask’ set but not used [-Wunused-but-set-variable]
 2514 |   BlockMask            bkmask;
      |                        ^~~~~~
asn2gnb1.c: In function ‘Count2Seg’:
asn2gnb1.c:3438:18: warning: variable ‘to’ set but not used [-Wunused-but-set-variable]
 3438 |   Int4           to;
      |                  ^~
asn2gnb1.c:3436:18: warning: variable ‘parent’ set but not used [-Wunused-but-set-variable]
 3436 |   BioseqPtr      parent;
      |                  ^~~~~~
asn2gnb1.c: At top level:
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
 3714 | static ModeFlags flagTable [] = {
      |                                 ^
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c: In function ‘SeqIdWriteForTable’:
asn2gnb1.c:5808:13: warning: variable ‘pdb’ set but not used [-Wunused-but-set-variable]
 5808 |             pdb = NULL, general = NULL, gi = NULL;
      |             ^~~
asn2gnb1.c:5807:40: warning: variable ‘patent’ set but not used [-Wunused-but-set-variable]
 5807 |   SeqIdPtr  accn = NULL, local = NULL, patent = NULL,
      |                                        ^~~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb1.c:43:
asn2gnb1.c: In function ‘DoImmediateFormat’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb1.c:6951:19: note: in expansion of macro ‘MAX’
 6951 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb1.c:6930:20: warning: variable ‘is_www’ set but not used [-Wunused-but-set-variable]
 6930 |   Boolean          is_www;
      |                    ^~~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb1.c:43:
asn2gnb1.c: In function ‘asn2gnbk_format’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb1.c:7072:19: note: in expansion of macro ‘MAX’
 7072 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb1.c: In function ‘asn2gnbk_cleanup’:
asn2gnb1.c:7118:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 7118 |   IntAsn2gbSectPtr  iasp;
      |                     ^~~~
asn2gnb1.c: In function ‘SeqEntryToGnbk’:
asn2gnb1.c:7304:22: warning: variable ‘userdata’ set but not used [-Wunused-but-set-variable]
 7304 |   Pointer            userdata = NULL;
      |                      ^~~~~~~~
asn2gnb1.c:7299:22: warning: variable ‘gbseq’ set but not used [-Wunused-but-set-variable]
 7299 |   GBSeqPtr           gbseq = NULL;
      |                      ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb1.c:58:
asn2gnb1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb1.c: In function ‘PrintFtableIntervals’:
asn2gnb1.c:5463:28: warning: ‘
   ’ directive writing 1 byte into a region of size between 0 and 62 [-Wformat-overflow=]
 5463 |   sprintf (str, "%s\t%s\t%s\n", str1, str2, label);
      |                            ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 66) into a destination of size 64
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb1.c:5487:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5487 |       sprintf (str, "%s\t%s\n", str1, str2);
      |                              ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 65 bytes into a destination of size 64
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb2.c: In function ‘s_LocusAddSuffix’:
asn2gnb2.c:217:11: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable]
  217 |   Char    ch;
      |           ^~
asn2gnb2.c: In function ‘AddLocusBlock’:
asn2gnb2.c:1361:66: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1361 |       } else if ((moltype >= 2 && moltype <= 8) || moltype >= 10 && moltype <= 11) {
      |                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
asn2gnb2.c: In function ‘IsSuccessor’:
asn2gnb2.c:1742:15: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |               ^~
asn2gnb2.c:1742:10: note: did you mean to dereference the pointer?
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |          ^
asn2gnb2.c:1742:34: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |                                  ^~
asn2gnb2.c:1742:28: note: did you mean to dereference the pointer?
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |                            ^
asn2gnb2.c: In function ‘IsProjectAccn’:
asn2gnb2.c:1767:38: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1767 |     for (ptr = acc, letters = 0; ptr != '\0'  &&  IS_ALPHA(*ptr); ++ptr, ++letters) continue;
      |                                      ^~
asn2gnb2.c:1767:34: note: did you mean to dereference the pointer?
 1767 |     for (ptr = acc, letters = 0; ptr != '\0'  &&  IS_ALPHA(*ptr); ++ptr, ++letters) continue;
      |                                  ^
asn2gnb2.c: In function ‘AddDblinkBlock’:
asn2gnb2.c:2892:22: warning: variable ‘parentID’ set but not used [-Wunused-but-set-variable]
 2892 |   Int4               parentID;
      |                      ^~~~~~~~
asn2gnb2.c: In function ‘AddSPBlock’:
asn2gnb2.c:3409:14: warning: implicit declaration of function ‘PrintDate’ [-Wimplicit-function-declaration]
 3409 |     string = PrintDate (spb->created);
      |              ^~~~~~~~~
asn2gnb2.c:3409:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3409 |     string = PrintDate (spb->created);
      |            ^
asn2gnb2.c:3417:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3417 |     string = PrintDate (spb->sequpd);
      |            ^
asn2gnb2.c:3424:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3424 |     string = PrintDate (spb->annotupd);
      |            ^
asn2gnb2.c: In function ‘AddSourceOrganismBlock’:
asn2gnb2.c:5056:22: warning: variable ‘common’ set but not used [-Wunused-but-set-variable]
 5056 |   CharPtr            common;
      |                      ^~~~~~
asn2gnb2.c: In function ‘GetRefsOnBioseq’:
asn2gnb2.c:5893:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 5893 |   Uint1              strand;
      |                      ^~~~~~
asn2gnb2.c:5890:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 5890 |   Boolean            split;
      |                      ^~~~~
asn2gnb2.c:5884:22: warning: variable ‘right’ set but not used [-Wunused-but-set-variable]
 5884 |   Int4               right;
      |                      ^~~~~
asn2gnb2.c:5878:22: warning: variable ‘left’ set but not used [-Wunused-but-set-variable]
 5878 |   Int4               left;
      |                      ^~~~
asn2gnb2.c: In function ‘AddLocusBlock’:
asn2gnb2.c:239:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
  239 |   sprintf(segCountStr,"%d",awp->numsegs);
      |                        ^~
asn2gnb2.c:239:23: note: directive argument in the range [2, 2147483647]
  239 |   sprintf(segCountStr,"%d",awp->numsegs);
      |                       ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 6
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:244:25: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 4 [-Wformat-overflow=]
  244 |     sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg);
      |                         ^~~~
asn2gnb2.c:244:23: note: directive argument in the range [0, 65535]
  244 |     sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg);
      |                       ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 32770 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:246:24: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 5 [-Wformat-overflow=]
  246 |     sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg);
      |                        ^~~~
asn2gnb2.c:246:23: note: directive argument in the range [0, 65535]
  246 |     sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg);
      |                       ^~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1514:48: warning: ‘" title="Jump to the comment...’ directive writing 69 bytes into a region of size between 66 and 106 [-Wformat-overflow=]
 1514 |       sprintf (sect, "<li><a href=\"#comment_%s\" title=\"Jump to the comment section of this record\">Comment</a></li>",
      |                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 92 and 132 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1518:46: warning: ‘" title="Jump to the feature...’ directive writing 68 bytes into a region of size between 66 and 106 [-Wformat-overflow=]
 1518 |     sprintf (sect, "<li><a href=\"#feature_%s\" title=\"Jump to the feature table of this record\">Features</a></li>",
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 91 and 131 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1527:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1527 |       sprintf (sect, "<li><a href=\"#genome_%s\" title=\"Jump to the genome section of this record\">Genome</a></li>",
      |                                                                                                                     ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1532:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1532 |       sprintf (sect, "<li><a href=\"#contig_%s\" title=\"Jump to the contig section of this record\">Contig</a></li>",
      |                                                                                                                     ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1579:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=]
 1579 |       sprintf (sect, "<li class=\"next\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Next</a></li>", (long) nextGi, seqid);
      |                                                                                 ^~                                  ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 67 and 203 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1587:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=]
 1587 |       sprintf (sect, "<li class=\"next\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Next</a></li>", (long) awp->nextGi, seqid);
      |                                                                                 ^~                                       ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 67 and 204 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1600:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=]
 1600 |       sprintf (sect, "<li class=\"prev\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Previous</a></li>", (long) prevGi, seqid);
      |                                                                                 ^~                                      ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 71 and 207 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1608:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=]
 1608 |       sprintf (sect, "<li class=\"prev\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Previous</a></li>", (long) awp->prevGi, seqid);
      |                                                                                 ^~                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 71 and 208 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb3.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb3.c: In function ‘GetStatusForRefTrack’:
asn2gnb3.c:796:22: warning: variable ‘urf’ set but not used [-Wunused-but-set-variable]
  796 |   UserFieldPtr  ufp, urf = NULL;
      |                      ^~~
asn2gnb3.c: In function ‘AddCommentBlock’:
asn2gnb3.c:2656:22: warning: variable ‘is_wgs’ set but not used [-Wunused-but-set-variable]
 2656 |   Boolean            is_wgs = FALSE;
      |                      ^~~~~~
asn2gnb3.c: In function ‘GetSourcesOnBioseq’:
asn2gnb3.c:5472:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 5472 |   Uint1              strand;
      |                      ^~~~~~
asn2gnb3.c:5470:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5470 |   Int4               start;
      |                      ^~~~~
asn2gnb3.c:5468:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 5468 |   Boolean            split;
      |                      ^~~~~
asn2gnb3.c: In function ‘AddSourceFeatBlock’:
asn2gnb3.c:5989:22: warning: unused variable ‘sip’ [-Wunused-variable]
 5989 |   SeqIdPtr           sip;
      |                      ^~~
asn2gnb3.c: In function ‘GetFeatsOnCdsProduct’:
asn2gnb3.c:6446:22: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable]
 6446 |   Boolean            isRefSeq;
      |                      ^~~~~~~~
asn2gnb3.c: In function ‘GetRemoteFeatsOnCdsProduct’:
asn2gnb3.c:6595:20: warning: variable ‘lastsfp’ set but not used [-Wunused-but-set-variable]
 6595 |   SeqFeatPtr       lastsfp;
      |                    ^~~~~~~
asn2gnb3.c:6594:20: warning: variable ‘lastsap’ set but not used [-Wunused-but-set-variable]
 6594 |   SeqAnnotPtr      lastsap;
      |                    ^~~~~~~
asn2gnb3.c:6593:20: warning: variable ‘lastright’ set but not used [-Wunused-but-set-variable]
 6593 |   Int4             lastright;
      |                    ^~~~~~~~~
asn2gnb3.c:6592:20: warning: variable ‘lastleft’ set but not used [-Wunused-but-set-variable]
 6592 |   Int4             lastleft;
      |                    ^~~~~~~~
asn2gnb3.c:6591:20: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable]
 6591 |   Boolean          isRefSeq;
      |                    ^~~~~~~~
asn2gnb3.c: In function ‘GetFeatsOnBioseq’:
asn2gnb3.c:6895:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 6895 |   Int4               start;
      |                      ^~~~~
asn2gnb3.c:6866:22: warning: variable ‘icp’ set but not used [-Wunused-but-set-variable]
 6866 |   IntCdsBlockPtr     icp;
      |                      ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb3.c:57:
asn2gnb3.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb3.c:1582:16: warning: ‘nsWGSGapsString’ defined but not used [-Wunused-variable]
 1582 | static CharPtr nsWGSGapsString = "The strings of n's in this record represent gaps between contigs or uncallable bases.";
      |                ^~~~~~~~~~~~~~~
asn2gnb3.c:1581:16: warning: ‘nsAreGapsString’ defined but not used [-Wunused-variable]
 1581 | static CharPtr nsAreGapsString = "The strings of n's in this record represent gaps between contigs, and the length of each string corresponds to the length of the gap.";
      |                ^~~~~~~~~~~~~~~
asn2gnb3.c: In function ‘AddCommentBlock’:
asn2gnb3.c:3429:29: warning: ‘nm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3429 |                         if (IS_protdb_accession (nm)) {
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb4.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockQuals’:
asn2gnb4.c:3723:50: warning: "/*" within comment [-Wcomment]
 3723 |                 StringChr (str + 1, '(') == NULL /* && StringChr (str, ',') != NULL */) {
      |                                                   
asn2gnb4.c:3101:24: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 3101 |   Boolean              split;
      |                        ^~~~~
asn2gnb4.c:3042:24: warning: variable ‘at_end’ set but not used [-Wunused-but-set-variable]
 3042 |   Boolean              at_end = FALSE;
      |                        ^~~~~~
asn2gnb4.c: In function ‘FF_asn2gb_www_featkey_Ex’:
asn2gnb4.c:5325:16: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable]
 5325 |   CharPtr      prefix = "?";
      |                ^~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockEx’:
asn2gnb4.c:6572:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 6572 |   Boolean            split;
      |                      ^~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb4.c:42:
asn2gnb4.c: In function ‘DoImmediateRemoteFeatureFormat’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb4.c:8796:19: note: in expansion of macro ‘MAX’
 8796 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb4.c: In function ‘FormatFeatureQuals’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb4.c:8869:19: note: in expansion of macro ‘MAX’
 8869 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb4.c:57:
asn2gnb4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockEx’:
asn2gnb4.c:7695:26: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7695 |               oldscope = SeqEntrySetScope (sep);
      |                          ^~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb5.c: In function ‘FormatCitBookArt’:
asn2gnb5.c:2108:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2108 |   ValNodePtr   vnp;
      |                ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb5.c:57:
asn2gnb5.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb5.c: In function ‘FormatReferenceBlock’:
asn2gnb5.c:2553:22: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 2553 |       sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                      ^~~
asn2gnb5.c:2553:19: note: directive argument in the range [1, 2147483647]
 2553 |       sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                   ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb5.c:2550:22: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 2550 |       sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                      ^~~
asn2gnb5.c:2550:19: note: directive argument in the range [1, 2147483647]
 2550 |       sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                   ^~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb6.c: In function ‘FlatLocElement’:
asn2gnb6.c:2546:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2546 |         if (sintp->to > 0 &&
      |             ~~~~~~~~~~~~~~^~
 2547 |             (sintp->to != sintp->from ||
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2548 |              sintp->if_from != NULL ||
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~
 2549 |              sintp->if_to != NULL) ||
      |              ~~~~~~~~~~~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatContigBlock’:
asn2gnb6.c:5701:20: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable]
 5701 |   DeltaSeqPtr      dspnext;
      |                    ^~~~~~~
asn2gnb6.c: In function ‘ProcessGapSpecialFormat’:
asn2gnb6.c:6041:13: warning: unused variable ‘sip’ [-Wunused-variable]
 6041 |   SeqIdPtr  sip;
      |             ^~~
asn2gnb6.c: In function ‘FormatSequenceBlock’:
asn2gnb6.c:6168:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 6168 |   IntAsn2gbSectPtr  iasp;
      |                     ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb6.c:57:
asn2gnb6.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb6.c:76:16: warning: ‘link_lat_lon’ defined but not used [-Wunused-variable]
   76 | static CharPtr link_lat_lon = "https://www.ncbi.nlm.nih.gov/projects/Sequin/latlonview.html?";
      |                ^~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatSourceFeatBlock’:
asn2gnb6.c:4322:22: warning: ‘+’ directive writing 1 byte into a region of size between 0 and 128 [-Wformat-overflow=]
 4322 |   sprintf (tmp, "%s%s+%s%s", ns, tokens [0], ew, tokens [2]);
      |                      ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 131) into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ftusrstr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ftusrstr.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbfeat.c
gbfeat.c: In function ‘CkLabelType’:
gbfeat.c:1465:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1465 |   for (str = bptr; *str != '\0' && IS_ALPHA(*str) || IS_DIGIT(*str)
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbftglob.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbparint.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/parsegb.h:57,
                 from gbparint.c:102:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gbparint.c: In function ‘Nlm_gbparselex’:
gbparint.c:2134:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2134 |                     if (*current_col != '\0')
      |                        ^
gbparint.c: In function ‘Nlm_gbparselex_ver’:
gbparint.c:2520:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2520 |                     if (*current_col != '\0')
      |                        ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF utilpars.c
utilpars.c:112:39: warning: missing braces around initializer [-Wmissing-braces]
  112 |  ParFlat_AA_array[ParFlat_TOTAL_AA] = {
      |                                       ^
  113 |        "Ala", 'A',
      |        {         }
  114 |         "Asx", 'B',
      |         {         }
  115 |         "Cys", 'C',
      |         {         }
  116 |         "Asp", 'D',
      |         {         }
  117 |         "Glu", 'E',
      |         {         }
  118 |         "Phe", 'F',
      |         {         }
  119 |         "Gly", 'G',
      |         {         }
  120 |         "His", 'H',
      |         {         }
  121 |         "Ile", 'I',
      |         {         }
  122 |         "Xle", 'J',  /* was - notice no 'J', breaks naive meaning of index -Karl */
      |         {         }
  123 |         "Lys", 'K',
      |         {         }
  124 |         "Leu", 'L',
      |         {         }
  125 |         "Met", 'M',
      |         {         }
  126 |         "Asn", 'N',
      |         {         }
  127 |         "Pyl", 'O',  /* was - no 'O' */
      |         {         }
  128 |         "Pro", 'P',
      |         {         }
  129 |         "Gln", 'Q',
      |         {         }
  130 |         "Arg", 'R',
      |         {         }
  131 |         "Ser", 'S',
      |         {         }
  132 |         "Thr", 'T',
      |         {         }
  133 |         "Val", 'V',
      |         {         }
  134 |         "Trp", 'W',
      |         {         }
  135 |         "Sec", 'U', /* was - not in iupacaa */
      |         {         }
  136 |         "Xxx", 'X',
      |         {         }
  137 |         "Tyr", 'Y',
      |         {         }
  138 |         "Glx", 'Z',
      |         {         }
  139 |         "TERM", '*', /* not in iupacaa */ /*changed by Tatiana 06.07.95?`*/
      |         {          }
  140 |         "OTHER", 'X'};
      |         {           }
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF utilpub.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from utilpub.c:13:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
utilpub.c: In function ‘FindCit’:
utilpub.c:998:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable]
  998 |  ImpFeatPtr  /*UNUSED*/ifp;
      |                        ^~~
utilpub.c: In function ‘ChangeCitQual’:
utilpub.c:1053:53: warning: variable ‘pub’ set but not used [-Wunused-but-set-variable]
 1053 |  ValNodePtr  vnp, pubset = NULL, pub_min, /*UNUSED*/pub;
      |                                                     ^~~
utilpub.c:1052:34: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable]
 1052 |  ValNodePtr PNTR vnpp, /*UNUSED*/descr;
      |                                  ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ffprint.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from ffprint.c:127:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ffprint.c: In function ‘FFBSPrint’:
ffprint.c:347:19: warning: unused variable ‘byte_sp’ [-Wunused-variable]
  347 |     ByteStorePtr  byte_sp = NULL;
      |                   ^~~~~~~
At top level:
ffprint.c:420:16: warning: ‘ff_print_insert’ defined but not used [-Wunused-function]
  420 | static CharPtr ff_print_insert(CharPtr str, CharPtr ins)
      |                ^~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from ffprint.c:127:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF wprint.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
wprint.c: In function ‘LocPrintGenome’:
wprint.c:1696:14: warning: unused variable ‘sep’ [-Wunused-variable]
 1696 |  SeqEntryPtr sep = NULL;
      |              ^~~
wprint.c:1695:25: warning: unused variable ‘b’ [-Wunused-variable]
 1695 |  BioseqPtr  bsp = NULL, b = NULL;
      |                         ^
wprint.c:1695:13: warning: unused variable ‘bsp’ [-Wunused-variable]
 1695 |  BioseqPtr  bsp = NULL, b = NULL;
      |             ^~~
wprint.c:1692:34: warning: unused variable ‘temp’ [-Wunused-variable]
 1692 |  static Char  buf[14], val[166], temp[166];
      |                                  ^~~~
At top level:
wprint.c:1692:34: warning: ‘temp’ defined but not used [-Wunused-variable]
wprint.c:79:13: warning: ‘link_gdb_map’ defined but not used [-Wunused-variable]
   79 | static Char link_gdb_map[MAX_WWWBUF];
      |             ^~~~~~~~~~~~
wprint.c:77:13: warning: ‘link_pir’ defined but not used [-Wunused-variable]
   77 | static Char link_pir[MAX_WWWBUF];
      |             ^~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from wprint.c:51:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
wprint.c: In function ‘PrintDate’:
wprint.c:188:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  188 |    sprintf(day, "%d", (int) (date -> data[3] ));
      |                    ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
wprint.c: In function ‘www_db_xref’:
wprint.c:969:20: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 4 and 9 [-Wformat-overflow=]
  969 |     sprintf(id, "%d%d", id1, id2);
      |                    ^~
wprint.c:969:17: note: directive argument in the range [-32768, 32767]
  969 |     sprintf(id, "%d%d", id1, id2);
      |                 ^~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 13 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
wprint.c: In function ‘www_xref’:
../include/ncbistr.h:331:19: warning: ‘prefix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1358:19: note: ‘prefix’ was declared here
 1358 |  CharPtr s, link, prefix, ss;
      |                   ^~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
../include/ncbistr.h:331:19: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1358:13: note: ‘link’ was declared here
 1358 |  CharPtr s, link, prefix, ss;
      |             ^~~~
wprint.c: In function ‘PrintSPBlock’:
wprint.c:1570:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1570 |      AddLink(s);
      |      ^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF satutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/satutil.h:12,
                 from satutil.c:87:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
satutil.c: In function ‘CopyFeatureFromAlign’:
satutil.c:1011:10: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable]
 1011 |  Boolean check_gap;
      |          ^~~~~~~~~
At top level:
satutil.c:168:16: warning: ‘bk_map_one_location’ defined but not used [-Wunused-function]
  168 | static Boolean bk_map_one_location(SeqLocPtr source_loc, SeqAlignPtr align, SeqIdPtr target_sip, Boolean check_gap, Int4Ptr r_start, Int4Ptr r_stop, SeqLocPtr PNTR head_slp)
      |                ^~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from seqmgr.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqmgr.c: In function ‘SeqEntrySetScope’:
seqmgr.c:311:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  311 |     Boolean found;
      |             ^~~~~
seqmgr.c: In function ‘ClearBioseqFindCache’:
seqmgr.c:897:14: warning: variable ‘smp’ set but not used [-Wunused-but-set-variable]
  897 |   SeqMgrPtr  smp;
      |              ^~~
seqmgr.c: In function ‘GetUniGeneIDForSeqId’:
seqmgr.c:3676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3676 |     if(StringCmp(db_tag->db, "BSNR") == 0)
      |     ^~
seqmgr.c:3678:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3678 |         if(StringCmp(db_tag->db, "HUMGEN") == 0)
      |         ^~
seqmgr.c: In function ‘SeqMgrGetExtraDataForOmdp’:
seqmgr.c:3736:14: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable]
 3736 |   ObjMgrPtr  omp;
      |              ^~~
seqmgr.c: In function ‘CheckForTransSplice’:
seqmgr.c:5657:14: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 5657 |   SeqLocPtr  prev, tmp;
      |              ^~~~
seqmgr.c: In function ‘SeqEntryAsnOut’:
seqmgr.c:11799:41: warning: variable ‘aopp_desc’ set but not used [-Wunused-but-set-variable]
11799 |    AsnOptionPtr       aopp_feat = NULL, aopp_desc = NULL;
      |                                         ^~~~~~~~~
seqmgr.c:11799:23: warning: variable ‘aopp_feat’ set but not used [-Wunused-but-set-variable]
11799 |    AsnOptionPtr       aopp_feat = NULL, aopp_desc = NULL;
      |                       ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqmgr.c:63:
seqmgr.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from objmgr.c:51:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmgr.c: In function ‘ObjMgrReapOne’:
objmgr.c:2727:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2727 |     if (omp->reaping)   /* protect against recursion caused by ObjMgrSendMsg */
      |     ^~
objmgr.c:2730:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2730 |         lowest = UINT4_MAX;
      |         ^~~~~~
objmgr.c: In function ‘ObjMgrDeSelectStructFunc’:
objmgr.c:3767:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3767 |     if (next != NULL)
      |     ^~
objmgr.c:3770:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3770 |         ObjMgrSendDeSelMsg (omp, ssp->entityID, ssp->itemID, ssp->itemtype, ssp->regiontype, ssp->region);
      |         ^~~~~~~~~~~~~~~~~~
objmgr.c: In function ‘ObjMgrSelectFunc2’:
objmgr.c:4031:22: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
 4031 |         Boolean      retval = FALSE;
      |                      ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gather.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from gather.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gather.c: In function ‘AttachDataProc’:
gather.c:4827:30: warning: variable ‘into_seqentry’ set but not used [-Wunused-but-set-variable]
 4827 |     Boolean no_good = FALSE, into_seqentry = FALSE;
      |                              ^~~~~~~~~~~~~
gather.c: In function ‘GatherSeqFeat’:
gather.c:415:45: warning: ‘newid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  415 |     if ((head == NULL) || (seq_loc == NULL) || (newid == NULL)) return NULL;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
gather.c:1414:14: note: ‘newid’ was declared here
 1414 |     SeqIdPtr newid;
      |              ^~~~~
gather.c:1495:17: warning: ‘numcheck’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1495 |                 for (j = 0; ((j < numcheck) && (! takeit) && (!stop_now)); j++)
      |                 ^~~
gather.c:1530:86: warning: ‘max_interval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1530 |                                 lrdp = (GatherRangePtr)MemNew((size_t)((max_interval + 20) * sizeof(GatherRange)));
      |                                                                                      ^
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from gather.c:44:
../include/ncbimem.h:232:23: warning: ‘lrdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
gather.c:1404:38: note: ‘lrdp’ was declared here
 1404 |     GatherRangePtr rdp = NULL, trdp, lrdp;
      |                                      ^~~~
gather.c: In function ‘gather_align_data’:
gather.c:2219:15: warning: ‘master_loc’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2219 |     SeqLocPtr master_loc, m_loc;
      |               ^~~~~~~~~~
gather.c:2218:10: warning: ‘mag_val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2218 |     Int4 mag_val;    /*the magnification value */
      |          ^~~~~~~
gather.c: In function ‘GatherBioseqFunc’:
gather.c:3307:53: warning: ‘tlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3307 |                                 rdp->right = offset + tlen - 1;
      |                                              ~~~~~~~^~~~~~
gather.c:3280:39: warning: ‘trunc_r’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3280 |                                    if (trunc_r)
      |                                       ^
gather.c:3285:40: warning: ‘trunc_l’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3285 |                                     if (trunc_l)
      |                                        ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accmmdbs.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accmmdbs.c:120:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF acccn3ds.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from acccn3ds.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lsqfetch.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/lsqfetch.h:110,
                 from lsqfetch.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
lsqfetch.c: In function ‘ChangeLocalToGenbank’:
lsqfetch.c:1403:21: warning: ‘%s’ directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=]
 1403 |   sprintf (tmp, "gb|%s", id);
      |                     ^~   ~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/lsqfetch.h:110,
                 from lsqfetch.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 4 and 44 bytes into a destination of size 41
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF findrepl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from findrepl.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF codon.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/codon.h:61,
                 from codon.c:2:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
codon.c: In function ‘make_cds_paragraph’:
codon.c:262:7: warning: variable ‘space_len’ set but not used [-Wunused-but-set-variable]
  262 |  Int4 space_len, i;
      |       ^~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jzcoll.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from jzcoll.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
jzcoll.c: In function ‘load_default_matrix’:
jzcoll.c:99:13: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   99 |    ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
      |       ~~~~~~^~~
jzcoll.c:99:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   99 |    ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
      |                  ~~~~~~^~~
jzcoll.c:101:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  101 |   ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
      |      ~~~~~~^~~
jzcoll.c:101:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  101 |   ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
      |                                ~~~~~~^~~
jzcoll.c: In function ‘GetUseThisGi’:
jzcoll.c:143:10: warning: unused variable ‘retval’ [-Wunused-variable]
  143 |  Boolean retval=FALSE;
      |          ^~~~~~
jzcoll.c: In function ‘buffer_for_feature’:
jzcoll.c:514:7: warning: unused variable ‘i’ [-Wunused-variable]
  514 |  Int2 i=0;
      |       ^
jzcoll.c: In function ‘ProcessTextInsertion’:
jzcoll.c:878:7: warning: variable ‘last_ins’ set but not used [-Wunused-but-set-variable]
  878 |  Int4 last_ins;
      |       ^~~~~~~~
jzcoll.c: In function ‘satcollfunc’:
jzcoll.c:1723:12: warning: variable ‘head’ set but not used [-Wunused-but-set-variable]
 1723 |  SeqLocPtr head;
      |            ^~~~
jzcoll.c:1721:8: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 1721 |  Uint1 strand;
      |        ^~~~~~
jzcoll.c:1720:7: warning: variable ‘current_pos’ set but not used [-Wunused-but-set-variable]
 1720 |  Int4 current_pos;
      |       ^~~~~~~~~~~
jzcoll.c:1714:12: warning: unused variable ‘slp’ [-Wunused-variable]
 1714 |  SeqLocPtr slp = NULL;
      |            ^~~
jzcoll.c: In function ‘coll_align_data’:
jzcoll.c:2631:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 2631 |     sprintf(buf, "%d", gilist->data.intvalue);
      |                   ~^   ~~~~~~~~~~~~~~~~~~~~~
      |                    |               |
      |                    int             Nlm_Int8 {aka long long int}
      |                   %lld
jzcoll.c: In function ‘collect_anpnode_with_option’:
jzcoll.c:3053:13: warning: unused variable ‘prev’ [-Wunused-variable]
 3053 |  ValNodePtr prev = NULL;
      |             ^~~~
jzcoll.c: In function ‘ck_seqfeat_extra’:
jzcoll.c:3414:10: warning: unused variable ‘has_gb’ [-Wunused-variable]
 3414 |  Boolean has_gb = FALSE, has_med = FALSE;
      |          ^~~~~~
jzcoll.c: In function ‘collseqfunc’:
jzcoll.c:3768:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3768 |      if(omtp->labelfunc !=NULL)
      |      ^~
jzcoll.c:3770:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3770 |       fnp->landmark = check_feature_for_landmark(chp->thislabel, chp->gdata, sfp, gcp, chp->priority);
      |       ^~~
jzcoll.c: In function ‘load_open_close_sts_mark’:
jzcoll.c:4010:10: warning: variable ‘collected’ set but not used [-Wunused-but-set-variable]
 4010 |  Boolean collected = FALSE;
      |          ^~~~~~~~~
jzcoll.c: In function ‘FeatNodeCompProc’:
jzcoll.c:4225:20: warning: variable ‘gr2’ set but not used [-Wunused-but-set-variable]
 4225 |   GatherRange gr1, gr2;
      |                    ^~~
jzcoll.c:4225:15: warning: variable ‘gr1’ set but not used [-Wunused-but-set-variable]
 4225 |   GatherRange gr1, gr2;
      |               ^~~
At top level:
jzcoll.c:2316:16: warning: ‘stop_collecting_alignment’ defined but not used [-Wunused-function]
 2316 | static Boolean stop_collecting_alignment(ValNodePtr anp_list, Int4 max_num)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~
jzcoll.c:1654:16: warning: ‘collect_sequence_label’ defined but not used [-Wunused-function]
 1654 | static Boolean collect_sequence_label(Uint1 format)
      |                ^~~~~~~~~~~~~~~~~~~~~~
jzcoll.c: In function ‘load_text.isra’:
jzcoll.c:421:41: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  421 |                             stdaa_res = SeqMapTableConvert(smtp, m_res);
      |                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jzmisc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/jzmisc.h:86,
                 from jzmisc.c:23:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF maputil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from maputil.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
maputil.c: In function ‘load_gene_list’:
maputil.c:690:8: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  690 |  Uint1 val;
      |        ^~~
maputil.c: In function ‘gmarkfunc’:
maputil.c:985:13: warning: variable ‘syn’ set but not used [-Wunused-but-set-variable]
  985 |  ValNodePtr syn = NULL;
      |             ^~~
maputil.c: In function ‘get_location_for_query’:
cc1: warning: function may return address of local variable [-Wreturn-local-addr]
maputil.c:1190:9: note: declared here
 1190 |  SeqLoc sl;
      |         ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mconsist.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/mconsist.h:4,
                 from mconsist.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF macroapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from macroapi.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
macroapi.c: In function ‘AdvancedStringCompare’:
macroapi.c:4463:23: warning: variable ‘init_target_match_len’ set but not used [-Wunused-but-set-variable]
 4463 |   Int4    len1, len2, init_target_match_len = 0, target_match_len = 0;
      |                       ^~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘RemoveGBQualMatch’:
macroapi.c:6981:27: warning: variable ‘does_match’ set but not used [-Wunused-but-set-variable]
 6981 |   Boolean   rval = FALSE, does_match, do_remove;
      |                           ^~~~~~~~~~
macroapi.c: In function ‘ParseCodonsRecognizedFromCommaDelimitedList’:
macroapi.c:7726:41: warning: pointer targets in passing argument 1 of ‘ExpandWobbleCodon’ differ in signedness [-Wpointer-sign]
 7726 |         wobble_list = ExpandWobbleCodon(codon);
      |                                         ^~~~~
      |                                         |
      |                                         Nlm_Uint1 * {aka unsigned char *}
macroapi.c:7636:46: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’}
 7636 | static ValNodePtr ExpandWobbleCodon (CharPtr codon)
macroapi.c: In function ‘GetQualFromFeatureAnyType’:
macroapi.c:8537:8: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 8536 |   if (str == NULL
      |       ~~~~~~~~~~~
 8537 |        && (field->choice == FeatQualChoice_legal_qual && field->data.intvalue == Feat_qual_legal_pseudo)
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:8681:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 8681 |       sprintf (buf, "%d", vnp->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~
      |                       |            |
      |                       int          Nlm_Int8 {aka long long int}
      |                      %lld
macroapi.c: In function ‘SetNameInPrimerList’:
macroapi.c:10682:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable]
10682 |   PCRPrimerPtr  pp, prev_pp = NULL;
      |                     ^~~~~~~
macroapi.c: In function ‘SetSeqInPrimerList’:
macroapi.c:10703:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable]
10703 |   PCRPrimerPtr  pp, prev_pp = NULL;
      |                     ^~~~~~~
macroapi.c: In function ‘GetGenomeProjectIdFromBioseq’:
macroapi.c:12881:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
12881 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long long int}
      |                          %lld
macroapi.c: In function ‘RemoveGenomeProjectIdFromBioseq’:
macroapi.c:12916:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
12916 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long long int}
      |                          %lld
macroapi.c: In function ‘SetGenomeProjectIdOnBioseq’:
macroapi.c:12957:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
12957 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long long int}
      |                          %lld
macroapi.c: In function ‘GetPubFieldFromPub’:
macroapi.c:15043:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
15043 |         sprintf (str, "%d", the_pub->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~~~~~~~
      |                         |                |
      |                         int              Nlm_Int8 {aka long long int}
      |                        %lld
macroapi.c: In function ‘GetCitListsForSeqEntry’:
macroapi.c:15825:19: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
15825 |   Uint2           entityID;
      |                   ^~~~~~~~
macroapi.c:15823:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable]
15823 |   Boolean         okay;
      |                   ^~~~
macroapi.c: In function ‘GetPubclassQualFromPub’:
macroapi.c:18324:11: warning: unused variable ‘str’ [-Wunused-variable]
18324 |   CharPtr str = NULL;
      |           ^~~
macroapi.c: In function ‘GetPubMLStatus’:
macroapi.c:18681:14: warning: variable ‘csp’ set but not used [-Wunused-but-set-variable]
18681 |   CitSubPtr  csp;
      |              ^~~
macroapi.c: In function ‘CollectDBLinkObjectsForApply’:
macroapi.c:20029:72: warning: unused variable ‘tmp_tail’ [-Wunused-variable]
20029 |   ValNodePtr     target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp;
      |                                                                        ^~~~~~~~
macroapi.c:20029:55: warning: unused variable ‘tmp_list’ [-Wunused-variable]
20029 |   ValNodePtr     target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp;
      |                                                       ^~~~~~~~
macroapi.c: In function ‘DoConvertActionToObjectListEx’:
macroapi.c:20844:20: warning: unused variable ‘already_added’ [-Wunused-variable]
20844 |   Boolean          already_added, field_change;
      |                    ^~~~~~~~~~~~~
macroapi.c: In function ‘ApplyPartial5SetActionToSeqFeat’:
macroapi.c:25749:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25749 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘ApplyPartial3SetActionToSeqFeat’:
macroapi.c:25872:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25872 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘ApplyPartialBothSetActionToSeqFeat’:
macroapi.c:25939:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25939 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘FindPosBeforeFeat’:
macroapi.c:26236:15: warning: variable ‘regulator’ set but not used [-Wunused-but-set-variable]
26236 |   SeqFeatPtr  regulator = NULL, candidate;
      |               ^~~~~~~~~
macroapi.c: In function ‘PerformAutofixInSeqEntry’:
macroapi.c:29471:8: warning: unused variable ‘num_created’ [-Wunused-variable]
29471 |   Int4 num_created = 0;
      |        ^~~~~~~~~~~
macroapi.c: In function ‘AddFileDescriptors’:
macroapi.c:29871:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
29871 |     while (sdp = SeqDescAsnRead (aip, NULL)) {
      |            ^~~
macroapi.c: In function ‘ApplyMacroToSeqEntryExEx’:
macroapi.c:31907:28: warning: too many arguments for format [-Wformat-extra-args]
31907 |           fprintf (log_fp, "Instantiated protein titles\n", num);
      |                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘PreprocessAddDescriptorListMacro’:
macroapi.c:32020:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
32020 |     while (sdp = SeqDescAsnRead (aip, NULL)) {
      |            ^~~
macroapi.c: In function ‘FieldTypeFromString’:
macroapi.c:32370:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
32370 |     if (ft == NULL && StringsAreEquivalent(str, "location") || StringsAreEquivalent(str, "genome")) {
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘SummarizeRemoveOutsideAction’:
macroapi.c:32939:11: warning: unused variable ‘case_insensitive’ [-Wunused-variable]
32939 |   CharPtr case_insensitive = " (case insensitive)";
      |           ^~~~~~~~~~~~~~~~
macroapi.c: In function ‘GetObjectTableForTabTable’:
macroapi.c:37508:63: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
37508 |   ValNodePtr obj_table = NULL, obj_row, last_obj = NULL, tmp, last = NULL;
      |                                                               ^~~~
macroapi.c: In function ‘FormatMultipleDestinationErrorMessage’:
macroapi.c:37987:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
37987 |     sprintf (buf, "%d", vnp->data.intvalue + 1);
      |                    ~^   ~~~~~~~~~~~~~~~~~~~~~~
      |                     |                      |
      |                     int                    Nlm_Int8 {aka long long int}
      |                    %lld
macroapi.c: In function ‘CheckObjTableForExistingText’:
macroapi.c:38084:14: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
38084 |   Uint2      entityID;
      |              ^~~~~~~~
macroapi.c: In function ‘FixSuspectProductNamesInEntrezGene’:
macroapi.c:40352:18: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable]
40352 |   CharPtr        prefix = NULL;
      |                  ^~~~~~
In file included from ../include/tax3api.h:51,
                 from macroapi.c:67:
macroapi.c: At top level:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
macroapi.c:37233:16: warning: ‘IsFieldTypeProteinDesc’ defined but not used [-Wunused-function]
37233 | static Boolean IsFieldTypeProteinDesc (FieldTypePtr ft)
      |                ^~~~~~~~~~~~~~~~~~~~~~
macroapi.c:27097:13: warning: ‘GetDescriptorTypeFromDescriptorChoice’ defined but not used [-Wunused-function]
27097 | static Int4 GetDescriptorTypeFromDescriptorChoice (Uint1 descriptor_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:21298:13: warning: ‘GetFieldsFromAECR’ defined but not used [-Wunused-function]
21298 | static void GetFieldsFromAECR (AECRActionPtr act, FieldTypePtr PNTR pField, ValNodePtr PNTR pFieldPair)
      |             ^~~~~~~~~~~~~~~~~
macroapi.c:20787:16: warning: ‘NoFieldChange’ defined but not used [-Wunused-function]
20787 | static Boolean NoFieldChange (CharPtr new_val, ValNodePtr vnp, FieldTypePtr field_from, StringConstraintPtr scp, BatchExtraPtr batch_extra)
      |                ^~~~~~~~~~~~~
macroapi.c:16014:13: warning: ‘InitBatchExtraForAECRActionAndObjectList’ defined but not used [-Wunused-function]
16014 | static void InitBatchExtraForAECRActionAndObjectList (BatchExtraPtr batch_extra, AECRActionPtr action, ValNodePtr object_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:10389:16: warning: ‘HasMultiplePrimerSets’ defined but not used [-Wunused-function]
10389 | static Boolean HasMultiplePrimerSets (CharPtr value)
      |                ^~~~~~~~~~~~~~~~~~~~~
macroapi.c:5482:16: warning: ‘DoesLocationMatchConstraint’ defined but not used [-Wunused-function]
 5482 | static Boolean DoesLocationMatchConstraint (SeqLocPtr slp, LocationConstraintPtr lcp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:4590:13: warning: ‘TestAdvancedStringMatch’ defined but not used [-Wunused-function]
 4590 | static void TestAdvancedStringMatch (void)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:2806:13: warning: ‘OriginFromOriginName’ defined but not used [-Wunused-function]
 2806 | static Int4 OriginFromOriginName (CharPtr origin_name)
      |             ^~~~~~~~~~~~~~~~~~~~
macroapi.c:1200:16: warning: ‘IsObjectAppropriateForFieldPair’ defined but not used [-Wunused-function]
 1200 | static Boolean IsObjectAppropriateForFieldPair (Uint1 choice, Pointer data, FieldPairTypePtr fieldpair)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘AlsoChangeMrnaForObject’:
macroapi.c:20637:10: warning: ‘mrna’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20637 |       if (mrna != NULL) {
      |          ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpedit.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salpedit.c:2:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpedit.c: In function ‘SeqAlignInsert’:
salpedit.c:162:12: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable]
  162 |  StdSegPtr ssp;
      |            ^~~
salpedit.c:161:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
  161 |         DenseDiagPtr ddp;
      |                      ^~~
At top level:
salpedit.c:4120:18: warning: ‘build_slp_for_gcontig’ defined but not used [-Wunused-function]
 4120 | static SeqLocPtr build_slp_for_gcontig (BioseqPtr gcontig_bsp, SeqIdPtr gcontig_sip)
      |                  ^~~~~~~~~~~~~~~~~~~~~
salpedit.c:4073:17: warning: ‘get_best_id’ defined but not used [-Wunused-function]
 4073 | static SeqIdPtr get_best_id(BioseqPtr bsp)
      |                 ^~~~~~~~~~~
salpedit.c:4046:16: warning: ‘second_seq_has_gap’ defined but not used [-Wunused-function]
 4046 | static Boolean second_seq_has_gap(BioseqPtr s_bsp)
      |                ^~~~~~~~~~~~~~~~~~
salpedit.c:4016:18: warning: ‘dup_mul_locs’ defined but not used [-Wunused-function]
 4016 | static SeqLocPtr dup_mul_locs(SeqLocPtr slp)
      |                  ^~~~~~~~~~~~
salpedit.c:3968:18: warning: ‘create_fake_bioseq’ defined but not used [-Wunused-function]
 3968 | static BioseqPtr create_fake_bioseq(SeqLocPtr seq_loc, CharPtr fake_name)
      |                  ^~~~~~~~~~~~~~~~~~
salpedit.c:3937:13: warning: ‘reverse_seqloc’ defined but not used [-Wunused-function]
 3937 | static void reverse_seqloc (SeqLocPtr s_loc)
      |             ^~~~~~~~~~~~~~
salpedit.c:3850:13: warning: ‘save_output’ defined but not used [-Wunused-function]
 3850 | static void save_output (SeqIdPtr sip, CharPtr f_name, SeqAlignPtr align)
      |             ^~~~~~~~~~~
salpedit.c:3836:13: warning: ‘get_align_list_len’ defined but not used [-Wunused-function]
 3836 | static Int4 get_align_list_len(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~~~~~~
salpedit.c:2939:20: warning: ‘open_annot’ defined but not used [-Wunused-function]
 2939 | static SeqAnnotPtr open_annot(CharPtr f_name)
      |                    ^~~~~~~~~~
salpedit.c:2835:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function]
 2835 | static void SeqAnnotWrite(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~
salpedit.c:2653:16: warning: ‘FigureAlignRange’ defined but not used [-Wunused-function]
 2653 | static Boolean FigureAlignRange(SeqAlignPtr align, SeqLocPtr m_loc, SeqLocPtr s_loc)
      |                ^~~~~~~~~~~~~~~~
salpedit.c:1665:16: warning: ‘free_diag_in_list’ defined but not used [-Wunused-function]
 1665 | static Boolean free_diag_in_list(ValNodePtr ddp_list, DenseDiagPtr ddp)
      |                ^~~~~~~~~~~~~~~~~
salpedit.c:1605:16: warning: ‘is_overlap’ defined but not used [-Wunused-function]
 1605 | static Boolean is_overlap(BoolPtr status, Int4 from, Int4 len)
      |                ^~~~~~~~~~
salpedit.c:1560:13: warning: ‘filter_wrong_orientation’ defined but not used [-Wunused-function]
 1560 | static void filter_wrong_orientation (SeqAlignPtr align, Boolean same_orient)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
salpedit.c:1479:16: warning: ‘filter_this_seg’ defined but not used [-Wunused-function]
 1479 | static Boolean filter_this_seg (DenseDiagPtr curr, DenseDiagPtr PNTR h_list, Int2 order)
      |                ^~~~~~~~~~~~~~~
salpedit.c:1422:16: warning: ‘convert_ddp_to_array’ defined but not used [-Wunused-function]
 1422 | static Int4Ptr convert_ddp_to_array (ValNodePtr ddp_list, Uint1 strand, Int2 s_order, Int4Ptr p_num)
      |                ^~~~~~~~~~~~~~~~~~~~
salpedit.c:1387:14: warning: ‘has_too_much_overlap’ defined but not used [-Wunused-function]
 1387 | static Uint1 has_too_much_overlap (Int4 start_1, Int4 stop_1, Int4 start_2, Int4 stop_2)
      |              ^~~~~~~~~~~~~~~~~~~~
salpedit.c:1281:13: warning: ‘attach_new_align’ defined but not used [-Wunused-function]
 1281 | static void attach_new_align(SeqAlignPtr new_salp, SeqAlignPtr PNTR old) {
      |             ^~~~~~~~~~~~~~~~
salpedit.c:1169:20: warning: ‘JZSeqAlignMerge’ defined but not used [-Wunused-function]
 1169 | static SeqAlignPtr JZSeqAlignMerge(SeqAlignPtr f_align, SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr t_align)
      |                    ^~~~~~~~~~~~~~~
salpedit.c:254:16: warning: ‘is_gap_segment’ defined but not used [-Wunused-function]
  254 | static Boolean is_gap_segment(Int4Ptr c_starts, Int2 dim)
      |                ^~~~~~~~~~~~~~
salpedit.c:158:20: warning: ‘SeqAlignInsert’ defined but not used [-Wunused-function]
  158 | static SeqAlignPtr SeqAlignInsert(SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr head, Boolean merge, Boolean add_insertion)
      |                    ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpstat.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salpstat.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpstat.c: In function ‘DenseSegStats’:
salpstat.c:310:10: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  310 |   if(dsp && (((mmatches || mmismatches) && bsp_1 && bsp_2)) || !(mmatches || mmismatches)) {
      |      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c: In function ‘SeqAlignScoreFix’:
salpstat.c:162:20: warning: ‘sp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  162 |      sp_last->next = (ScorePtr) MemNew(sizeof(Score));
salpstat.c: In function ‘DenseSegStats’:
salpstat.c:369:31: warning: ‘spp_2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  369 |                       res_2 = SeqPortGetResidue(spp_2);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c:368:31: warning: ‘spp_1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  368 |                       res_1 = SeqPortGetResidue(spp_1);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c: In function ‘SeqAlignWindowScoreFN’:
salpstat.c:2038:45: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2038 |                           residue_score[pos]=score;
      |                           ~~~~~~~~~~~~~~~~~~^~~~~~
salpstat.c:2020:34: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2020 |                       qgaps_score[last_pos]=-(g_open+len*g_ext);
      |                                  ^
salpstat.c: In function ‘SeqAlignWindowScore’:
salpstat.c:2214:12: warning: ‘scoreptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2214 |     return scoreptr;
      |            ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpacc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salpacc.h:33,
                 from salpacc.c:40:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpacc.c: In function ‘SeqAlignStrand’:
salpacc.c:334:20: warning: unused variable ‘this_strand’ [-Wunused-variable]
  334 |           Uint1Ptr this_strand=Seq_strand_unknown;
      |                    ^~~~~~~~~~~
salpacc.c: In function ‘SeqAlignStop’:
salpacc.c:561:13: warning: ‘this_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  561 |           if(this_stop!=-1)
      |             ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salprop.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salprop.h:46,
                 from salprop.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salprop.c: In function ‘CopySeqLocFromSeqAlign’:
salprop.c:398:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  398 |             else
      |             ^~~~
salprop.c:401:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  401 |                if(crp != NULL)   /*for coding region features*/
      |                ^~
salprop.c:291:12: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable]
  291 |    Boolean check_gap;
      |            ^~~~~~~~~
salprop.c: In function ‘FeatListToProp’:
salprop.c:1336:20: warning: variable ‘feat_itemID’ set but not used [-Wunused-but-set-variable]
 1336 |   Uint4            feat_itemID;
      |                    ^~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salprop.c:46:
salprop.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from salprop.c:42:
../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable]
   50 | static CharPtr GBFeat[number_GBFeat] = {
      |                ^~~~~~
salprop.c: In function ‘ApplyNewSeqFeat’:
salprop.c:620:11: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  620 |         j = stop - SeqLocStop(sfp_location);
      |         ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salprop.c:514:17: note: ‘stop’ was declared here
  514 |                 stop,
      |                 ^~~~
salprop.c:718:27: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  718 |      SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight);
      |                        ~~~^~~~~~~~~~
salprop.c:674:17: note: ‘sfp’ was declared here
  674 |   SeqFeatPtr    sfp;
      |                 ^~~
salprop.c:733:24: warning: ‘ppp.p5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  733 |            if (!sfp_p5 && ppp.p5)
      |                ~~~~~~~~^~~~~~~~~
salprop.c:679:17: note: ‘ppp.p5’ was declared here
  679 |   ParTials      ppp;
      |                 ^~~
salprop.c:737:12: warning: ‘ppp.p3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  737 |            SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salprop.c:679:17: note: ‘ppp.p3’ was declared here
  679 |   ParTials      ppp;
      |                 ^~~
salprop.c:861:40: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  861 |                              if ((val2=is_id_unique (entityID, SeqLocId(sfp->product))))
      |                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salsap.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salsap.h:57,
                 from salsap.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salsap.c: In function ‘DenseDiagToDenseSegFunc’:
salsap.c:2912:30: warning: variable ‘slpstop2’ set but not used [-Wunused-but-set-variable]
 2912 |                slpstop1 = 0, slpstop2 = 0;
      |                              ^~~~~~~~
salsap.c:2912:16: warning: variable ‘slpstop1’ set but not used [-Wunused-but-set-variable]
 2912 |                slpstop1 = 0, slpstop2 = 0;
      |                ^~~~~~~~
salsap.c:2911:31: warning: variable ‘slpstart2’ set but not used [-Wunused-but-set-variable]
 2911 |   Int4         slpstart1 = 0, slpstart2 = 0,
      |                               ^~~~~~~~~
salsap.c:2911:16: warning: variable ‘slpstart1’ set but not used [-Wunused-but-set-variable]
 2911 |   Int4         slpstart1 = 0, slpstart2 = 0,
      |                ^~~~~~~~~
salsap.c:2909:28: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2909 |   Int4         start1 = 0, start2 = 0,
      |                            ^~~~~~
salsap.c:2909:16: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2909 |   Int4         start1 = 0, start2 = 0,
      |                ^~~~~~
In file included from ../include/sqnutils.h:51,
                 from salsap.c:47:
salsap.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salsap.c:3631:13: warning: ‘FindSeqAlignCallback’ defined but not used [-Wunused-function]
 3631 | static void FindSeqAlignCallback (SeqEntryPtr sep, Pointer mydata,
      |             ^~~~~~~~~~~~~~~~~~~~
salsap.c:2157:16: warning: ‘AreDenseSegSegmentsValid’ defined but not used [-Wunused-function]
 2157 | static Boolean AreDenseSegSegmentsValid (DenseSegPtr dsp, Int4 start, Int4 num)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
salsap.c: In function ‘SeqAlignEndExtend’:
salsap.c:986:18: warning: ‘n_strands’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  986 |    Uint1Ptr      n_strands;
      |                  ^~~~~~~~~
salsap.c: In function ‘CleanStrandsSeqAlign’:
salsap.c:1662:29: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1662 |         for (j=0; j < numseg*dim && strandp!=NULL; j++, strandp++)
      |                       ~~~~~~^~~~
salsap.c:1669:39: warning: ‘numseg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1669 |         for (j=0, k=numseg-1; j<numseg/2; j++, k--) {
      |                                 ~~~~~~^~
salsap.c:1611:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1611 |   Int4Ptr     startp;
      |               ^~~~~~
salsap.c:1671:19: warning: ‘lenp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1671 |            lenp[j]=lenp[k];
      |            ~~~~~~~^~~~~~~~
salsap.c: In function ‘LocalAlignToSeqAnnotDimn’:
salsap.c:1851:9: warning: ‘the_lens’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1851 |   while ( j < lens )
      |         ^
salsap.c: In function ‘multseqalign_from_pairseqalign’:
salsap.c:4394:19: warning: ‘strandp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4394 |            strandp++;
      |            ~~~~~~~^~
salsap.c:4245:6: warning: ‘ok’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4245 |   if (!ok)
      |      ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salstruc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salstruc.h:56,
                 from salstruc.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salstruc.c: In function ‘prot_to_rputprot’:
salstruc.c:734:18: warning: comparison between pointer and zero character constant [-Wpointer-compare]
  734 |      if (strptmp == '\0') break;
      |                  ^~
salstruc.c:734:10: note: did you mean to dereference the pointer?
  734 |      if (strptmp == '\0') break;
      |          ^
salstruc.c: In function ‘data_collect_arrange’:
salstruc.c:1338:22: warning: variable ‘maxscroll’ set but not used [-Wunused-but-set-variable]
 1338 |   Int4               maxscroll;
      |                      ^~~~~~~~~
salstruc.c: In function ‘ShowAlignmentText’:
salstruc.c:2203:29: warning: variable ‘itemtype’ set but not used [-Wunused-but-set-variable]
 2203 |   Uint2           entityID, itemtype;
      |                             ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salstruc.c:40:
salstruc.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from salstruc.c:41:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salstruc.c: In function ‘data_collect_arrange’:
salstruc.c:918:52: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  918 |          if (OBJ_(tdp->feattype) == OBJ_BIOSEQ && (is_seqvisible(entityID, itemID, adp->seq_info)) )
      |                                                   ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salstruc.c:872:19: note: ‘entityID’ was declared here
  872 |   Uint2           entityID;
      |                   ^~~~~~~~
salstruc.c:1093:44: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1093 |                          seq_info->entityID=entityID;
      |                          ~~~~~~~~~~~~~~~~~~^~~~~~~~~
salstruc.c:1005:17: note: ‘entityID’ was declared here
 1005 |   Uint2         entityID;
      |                 ^~~~~~~~
salstruc.c: In function ‘ShowAlignmentText’:
salstruc.c:2256:16: warning: ‘bspsip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2256 |                print_line (fout, NULL, bufstr, leftmargin, adp->columnpcell, bspsip, html_option, FALSE);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salutil.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salutil.c: In function ‘ReadBufferFromSap’:
salutil.c:128:24: warning: variable ‘buffstart’ set but not used [-Wunused-but-set-variable]
  128 |   Int4        bufflen, buffstart;
      |                        ^~~~~~~~~
salutil.c:127:15: warning: variable ‘sumstart’ set but not used [-Wunused-but-set-variable]
  127 |   Int4        sumstart;
      |               ^~~~~~~~
salutil.c: In function ‘IS_protSeqLoc’:
salutil.c:594:11: warning: variable ‘seq’ set but not used [-Wunused-but-set-variable]
  594 |   CharPtr seq;
      |           ^~~
salutil.c: In function ‘ReplaceSeqIdWithSeqId’:
salutil.c:1236:20: warning: variable ‘oldscope’ set but not used [-Wunused-but-set-variable]
 1236 |   SeqEntryPtr      oldscope;
      |                    ^~~~~~~~
salutil.c: In function ‘del_ssp_fromid’:
salutil.c:1722:24: warning: variable ‘pressp’ set but not used [-Wunused-but-set-variable]
 1722 |   SelEdStructPtr ssp,  pressp = NULL;
      |                        ^~~~~~
salutil.c: In function ‘checkCDSselect_forprotein’:
salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2510 |         if (feat != NULL)
      |            ^
salutil.c: In function ‘NoMoreSegGapForOneAlignment’:
salutil.c:3647:8: warning: implicit declaration of function ‘AlnMgr2IndexSingleChildSeqAlign’ [-Wimplicit-function-declaration]
 3647 |        AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salutil.c:53:
salutil.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salutil.c: In function ‘sesp_to_slp’:
salutil.c:1927:18: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1927 |   Int2           j,k;
      |                  ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udvseq.h:100,
                 from udvseq.c:112:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvseq.c: In function ‘UDV_EncodeIdxFeat’:
udvseq.c:448:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  448 |  return *((Int4Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~
udvseq.c: In function ‘UDV_BigEncodeIdxFeat’:
udvseq.c:473:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  473 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
udvseq.c: In function ‘UDV_ParaGFTableFeatures’:
udvseq.c:947:22: warning: ‘nFeatLines’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  947 |       pgp->nFeatLines=nFeatLines/*-decal*/;
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~~
udvseq.c:966:32: warning: ‘PosFeat’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  966 |         (Uint2) context->index,(Uint2)PosFeat-decal,(Uint2)0));
      |                                ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blocks.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/blocks.h:88,
                 from blocks.c:93:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blocks.c: In function ‘IndexBlocks’:
blocks.c:928:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point]
  928 |    segp_align->to = segp_align->to = -1;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
blocks.c: In function ‘IndexNewBlocks’:
blocks.c:1084:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point]
 1084 |    segp_align->to = segp_align->to = -1;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
blocks.c: In function ‘GetBlockOrientation’:
blocks.c:2383:11: warning: ‘orient’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2383 |    return orient;
      |           ^~~~~~
blocks.c: In function ‘SAMergeBlocks’:
blocks.c:2165:21: warning: ‘tmp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2165 |                tmp2 = tmp2->next;
      |                ~~~~~^~~~~~~~~~~~
blocks.c:1572:28: warning: ‘tmp_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1572 |          merged->segp_head = tmp_head;
      |          ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
blocks.c:1470:27: warning: ‘tmp_curr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1470 |                tmp1->prev = tmp_curr;
      |                ~~~~~~~~~~~^~~~~~~~~~
blocks.c:1709:27: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1709 |                tmp1->prev = prev;
      |                ~~~~~~~~~~~^~~~~~
blocks.c:1670:34: warning: ‘new_sabp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1670 |             new_sabp1->segp_head = tmp_head;
      |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
blocks.c: In function ‘SASplitBlock’:
blocks.c:2796:25: warning: ‘segp2_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2796 |             segp2->prev = segp2_prev;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pgppop.c
pgppop.c:58:2: warning: missing braces around initializer [-Wmissing-braces]
   58 |  {
      |  ^
   59 |      /* Red  Grn Blue     Color     ColorID             Old Hex  New Hex */
   60 |    255, 255, 255, /* default     0                 0xffffff - */
      |    {            }
   61 |    255,  00, 153, /* hotpink     1                 0xff1493 0xff0099 */
      |    {            }
   62 |    255,   0, 255, /* magenta     2                 0xff00ff - */
      |    {            }
   63 |    153,  51, 255, /* purple      3                 0x9b30ff 0x9933ff */
      |    {            }
   64 |      0,   0, 255, /* blue        4                 0x0000ff - */
      |      {          }
   65 |     00, 153, 255, /* sky         5                 0x1e90ff 0x0099ff */
      |     {           }
   66 |      0, 255, 255, /* cyan        6                 0x00ffff - */
      |      {          }
   67 |      0, 255, 153, /* sea         7                 0x00ff8f 0x00ff99 */
      |      {          }
   68 |      0, 255,   0, /* green       8                 0x00ff00 - */
      |      {          }
   69 |    255, 255,   0, /* yellow      9                 0xffff00 - */
      |    {            }
   70 |    255, 204,   0, /* gold       10                 0xffa500 0xffcc00 */
      |    {            }
   71 |    255, 102,   0, /* orange     11                 0xff4500 0xff6600 */
      |    {            }
   72 |    255,   0,   0, /* red        12                 0xff0000 - */
      |    {            }
   73 |    255, 153, 153, /* pink       13                 0xff7256 0xff9999 */
      |    {            }
   74 |    255, 204, 204, /* pinktint   14                 0xffaeb9 0xffcccc */
      |    {            }
   75 |    255, 255, 255, /* white      15                0xffffff  -*/
      |    {            }
   76 |      0,   0,   0, /* black      16                0x000000 - */
      |      {          }
   77 |    204, 204, 255, /* bluetint   17                0xb0e2ff - 0xccccff*/
      |    {            }
   78 |    153, 255, 153, /* greentint  18                0x9aff9a - 0x99ff99 */
      |    {            }
   79 |    255, 255, 153, /* yellowtint 19                0xffec8b - 0xffff99 */
      |    {            }
   80 |    102, 102, 102, /* gray       20                0x7d7d7d   0x666666 */
      |    {            }
   81 |    153, 102,  51, /* brown      21                0x8b5742   01x996633 */
      |    {            }
   82 |    255,   0,   0, /* perm colors 22: red          0xff0000 - */
      |    {            }
   83 |      0, 255,   0, /* perm colors 23: green        0x00ff00 - */
      |      {          }
   84 |    255,   0, 255, /* perm colors 24: magenta      0xff00ff - */
      |    {            }
   85 |     00, 153, 255, /* perm colors 25: sky          0x1e90ff 0x0099ff */
      |     {           }
   86 |    153,  51, 255, /* perm colors 26: purple        0x9b30ff 0x9933ff */
      |    {            }
   87 |      0, 255,   0, /* SS colors 27: helix, green   0x00ff00 - */
      |      {          }
   88 |    255, 204,   0, /* SS colors 28: strand, gold   0xffa500 0xffcc00 */
      |    {            }
   89 |    255, 102,   0, /* SS colors 29: turn, orange   0xff4500 0xff6600 */
      |    {            }
   90 |      0, 255, 255, /* SS colors 30: coil, cyan     ox00ffff - */
      |      {          }
   91 |    255, 255,   0, /* highlight colors 31: yellow  0xffff00 - */
      |    {            }
   92 |      0,   0,   0 /* background colors 32: black  0x000000 - */
      |      {
   93 |  };
      |  }
pgppop.c: In function ‘DDV_WWW_get_CDS_minus’:
pgppop.c:329:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
  329 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
pgppop.c:327:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable]
  327 |     numivals2=0;
      |     ^~~~~~~~~
pgppop.c: In function ‘DDV_WWW_get_CDS_plus’:
pgppop.c:451:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
  451 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
pgppop.c: In function ‘DDV_DisplayTopScale’:
pgppop.c:1300:7: warning: unused variable ‘szBlank’ [-Wunused-variable]
 1300 | Char  szBlank[TABLE_LEFT_MARGIN+5]={""};
      |       ^~~~~~~
pgppop.c: In function ‘DDV_GetBLASTCompLine_1’:
pgppop.c:1736:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1736 |                     if (matrix[s][q]>0){
      |                               ^
pgppop.c:1736:34: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1736 |                     if (matrix[s][q]>0){
      |                                  ^
pgppop.c: In function ‘DDV_DisplayDefaultAlign’:
pgppop.c:3169:13: warning: unused variable ‘sabp’ [-Wunused-variable]
 3169 | SABlockPtr  sabp=NULL;/*indexed SeqAlign*/
      |             ^~~~
pgppop.c: In function ‘DDV_ShowSeqAlign’:
pgppop.c:3512:10: warning: unused variable ‘szPopSetAuth’ [-Wunused-variable]
 3512 |     Char szPopSetAuth[INFO_SIZE+1]={""};
      |          ^~~~~~~~~~~~
pgppop.c:3510:10: warning: unused variable ‘szPopSetName’ [-Wunused-variable]
 3510 |     Char szPopSetName[INFO_SIZE+1]={""};/*article title of the Pop-Set*/
      |          ^~~~~~~~~~~~
pgppop.c: In function ‘DDV_PrintPopSetSummary’:
pgppop.c:3683:9: warning: variable ‘bPairwise’ set but not used [-Wunused-but-set-variable]
 3683 | Boolean bPairwise=TRUE,bPrintTax,bPrintCom;
      |         ^~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from pgppop.c:49:
pgppop.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/ddvcreate.h:143,
                 from pgppop.c:54:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
pgppop.c:2664:13: warning: ‘DDV_PrintFastaGappedSequence’ defined but not used [-Wunused-function]
 2664 | static void DDV_PrintFastaGappedSequence(CharPtr szSequence,FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c:2617:13: warning: ‘DDV_GetGappedSequence’ defined but not used [-Wunused-function]
 2617 | static void DDV_GetGappedSequence(SegmentPtr segp,CharPtr szSequence,
      |             ^~~~~~~~~~~~~~~~~~~~~
pgppop.c:1841:13: warning: ‘DDV_HideMaskedLetters’ defined but not used [-Wunused-function]
 1841 | static void DDV_HideMaskedLetters(CharPtr szSeqMaster,ParaGPtr pgp,ValNodePtr mask)
      |             ^~~~~~~~~~~~~~~~~~~~~
pgppop.c:314:13: warning: ‘DDV_WWW_get_CDS_minus’ defined but not used [-Wunused-function]
  314 | static void DDV_WWW_get_CDS_minus(SeqMgrFeatContextPtr context,Int4 start,
      |             ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from pgppop.c:51:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
pgppop.c: In function ‘DDV_GetPubValues’:
pgppop.c:2873:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2873 |   sprintf(szBuf,"%d",year);
      |                    ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from pgppop.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 6
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c: In function ‘DDV_PopDisplay2’:
pgppop.c:998:22: warning: ‘pgp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  998 |      pgp2->StopLetter=pgp2->StartLetter+AbsLengthAli-1;
      |      ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c:1004:14: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1004 |     vnp->next=NULL;
      |              ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF samutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/samutil.h:230,
                 from samutil.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
samutil.c: In function ‘SAM_AlignIdComp’:
samutil.c:796:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  796 |     if ((a == NULL) || (b == NULL))
      |     ^~
samutil.c:799:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  799 |  choice = a->choice;
      |  ^~~~~~
samutil.c: In function ‘SAM_AlignIdDup’:
samutil.c:852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  852 |     if (oldid == NULL)
      |     ^~
samutil.c:855:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  855 |  newid = ValNodeNew(NULL);
      |  ^~~~~
samutil.c: In function ‘DDE_FreeStack’:
samutil.c:1556:11: warning: operation on ‘Index’ may be undefined [-Wsequence-point]
 1556 |     Index = ++Index % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Add’:
samutil.c:1611:22: warning: operation on ‘pStack->StackMin’ may be undefined [-Wsequence-point]
 1611 |     pStack->StackMin = ++pStack->StackMin % DDE_STACK_SIZE;
samutil.c:1622:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1622 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Prev’:
samutil.c:1686:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1686 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Next’:
samutil.c:1717:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1717 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_ShowRow’:
samutil.c:1984:26: warning: variable ‘NumRows’ set but not used [-Wunused-but-set-variable]
 1984 |   Int4                i, NumRows, HiRow, LowRow, tmp1, tmp2;
      |                          ^~~~~~~
samutil.c: In function ‘DDE_AddGapToEndOfAllRows’:
samutil.c:3106:41: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 3106 |   ValNodePtr        ptxtList, last_vnp, vnp;
      |                                         ^~~
samutil.c: In function ‘DDE_RightAddNode’:
samutil.c:3707:33: warning: variable ‘new_vnp’ set but not used [-Wunused-but-set-variable]
 3707 |   ValNodePtr     vnp, next_vnp, new_vnp;
      |                                 ^~~~~~~
samutil.c: In function ‘DDE_LeftMergeAndAddNodeList’:
samutil.c:3757:24: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable]
 3757 |   Boolean     RetVal1, RetVal2, IsLeftAlignedGap, NodeDeleted;
      |                        ^~~~~~~
samutil.c: In function ‘DDE_RightMergeAndAddNodeList’:
samutil.c:3813:38: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable]
 3813 |   Boolean     RetVal=FALSE, RetVal1, RetVal2, HeadChanged;
      |                                      ^~~~~~~
samutil.c: In function ‘DDE_ShiftRightBoundaryLeft1’:
samutil.c:4592:41: warning: variable ‘Index’ set but not used [-Wunused-but-set-variable]
 4592 |   Int4           NumBlocks, i, NumRows, Index, BlockCount=0;
      |                                         ^~~~~
samutil.c: In function ‘DDE_CreateArraysForDenseSeg’:
samutil.c:5028:22: warning: variable ‘NumSegs’ set but not used [-Wunused-but-set-variable]
 5028 |   Int4      NumRows, NumSegs, i, StartIndex, StopIndex, ArrayIndex=0;
      |                      ^~~~~~~
samutil.c: In function ‘DDE_AddAGap’:
samutil.c:3251:14: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3251 |     temp_vnp = ptxtList->next;
      |     ~~~~~~~~~^~~~~~~~~~~~~~~~
samutil.c:3137:15: note: ‘last_vnp’ was declared here
 3137 |   ValNodePtr  last_vnp;
      |               ^~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objall.h:64,
                 from ../include/samutil.h:231,
                 from samutil.c:42:
samutil.c: In function ‘DDE_RemoveGapFromEndOfAllRows’:
../include/ncbimem.h:232:23: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
samutil.c:3137:15: note: ‘last_vnp’ was declared here
 3137 |   ValNodePtr  last_vnp;
      |               ^~~~~~~~
samutil.c:3034:15: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3034 |     last_msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue;
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_AddGapToEndOfAllRows’:
samutil.c:3118:11: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3118 |     vnp = DDE_AddAGap(pEditInfo, i, last_vnp, FALSE, TRUE);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_GetLastVNP’:
samutil.c:3143:9: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3143 |   return(last_vnp);
      |         ^
samutil.c: In function ‘DDE_GetNumResidues’:
samutil.c:3166:13: warning: ‘to’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3166 |   return((to-from) + 1);
      |          ~~~^~~~~~
samutil.c: In function ‘DDE_ShiftLeftList’:
samutil.c:3923:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3923 |   msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_ShiftRowLeft1’:
samutil.c:2325:13: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2325 |   last_msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue;
      |   ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_RemoveGap’:
samutil.c:2854:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2854 |   msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_ShiftRowRight1’:
samutil.c:2356:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2356 |   msap = (MsaTxtDispPtr) DDE_GetLastVNP(ptxtList)->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_LastColumnIsAligned’:
samutil.c:4210:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4210 |   msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_ShiftRightBoundaryLeft1’:
samutil.c:4210:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4210 |   msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c:3137:15: note: ‘last_vnp’ was declared here
 3137 |   ValNodePtr  last_vnp;
      |               ^~~~~~~~
samutil.c: In function ‘DDE_ShiftRightBoundaryRight1’:
samutil.c:4210:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4210 |   msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c:3137:15: note: ‘last_vnp’ was declared here
 3137 |   ValNodePtr  last_vnp;
      |               ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvcolor.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvcolor.c:160:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvcolor.c: In function ‘DDV_GetColor’:
ddvcolor.c:1422:10: warning: unused variable ‘retval’ [-Wunused-variable]
 1422 |     Int4 retval = 0;
      |          ^~~~~~
In file included from ../include/samutil.h:234,
                 from ddvcolor.c:165:
ddvcolor.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewmgr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/viewmgr.h:111,
                 from viewmgr.c:165:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from viewmgr.c:167:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from viewmgr.c:168:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
viewmgr.c:683:13: warning: ‘ViewMgr_Swap’ defined but not used [-Wunused-function]
  683 | static void ViewMgr_Swap(SeqAlign *salp1, SeqAlign *salp2)
      |             ^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvcreate.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ddvcreate.h:142,
                 from ddvcreate.c:245:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvcreate.c:290:2: warning: missing braces around initializer [-Wmissing-braces]
  290 |  {
      |  ^
  291 |      /* Red  Grn Blue     Color     ColorID             Old Hex  New Hex */
  292 |    255, 255, 255, /* default     0                 0xffffff - */
      |    {            }
  293 |    255,   0, 153, /* hotpink     1                 0xff1493 0xff0099 */
      |    {            }
  294 |    255,   0, 255, /* magenta     2                 0xff00ff - */
      |    {            }
  295 |    153,  51, 255, /* purple      3                 0x9b30ff 0x9933ff */
      |    {            }
  296 |      0,   0, 255, /* blue        4                 0x0000ff - */
      |      {          }
  297 |     00, 153, 255, /* sky         5                 0x1e90ff 0x0099ff */
      |     {           }
  298 |      0, 255, 255, /* cyan        6                 0x00ffff - */
      |      {          }
  299 |      0, 255, 153, /* sea         7                 0x00ff8f 0x00ff99 */
      |      {          }
  300 |      0, 192,   0, /* green       8                 0x00ff00 - */
      |      {          }
  301 |    255, 255,   0, /* yellow      9                 0xffff00 - */
      |    {            }
  302 |    255, 204,   0, /* gold       10                 0xffa500 0xffcc00 */
      |    {            }
  303 |    255, 102,   0, /* orange     11                 0xff4500 0xff6600 */
      |    {            }
  304 |    255,   0,   0, /* red        12                 0xff0000 - */
      |    {            }
  305 |    255, 153, 153, /* pink       13                 0xff7256 0xff9999 */
      |    {            }
  306 |    255, 204, 204, /* pinktint   14                 0xffaeb9 0xffcccc */
      |    {            }
  307 |    255, 255, 255, /* white      15                0xffffff  -*/
      |    {            }
  308 |      0,   0,   0, /* black      16                0x000000 - */
      |      {          }
  309 |    204, 204, 255, /* bluetint   17                0xb0e2ff - 0xccccff*/
      |    {            }
  310 |    153, 255, 153, /* greentint  18                0x9aff9a - 0x99ff99 */
      |    {            }
  311 |    255, 255, 153, /* yellowtint 19                0xffec8b - 0xffff99 */
      |    {            }
  312 |    102, 102, 102, /* gray       20                0x7d7d7d   0x666666 */
      |    {            }
  313 |    153, 102,  51, /* brown      21                0x8b5742   01x996633 */
      |    {            }
  314 |    255,   0,   0, /* perm colors 22: red          0xff0000 - */
      |    {            }
  315 |      0, 255,   0, /* perm colors 23: green        0x00ff00 - */
      |      {          }
  316 |    255,   0, 255, /* perm colors 24: magenta      0xff00ff - */
      |    {            }
  317 |     00, 153, 255, /* perm colors 25: sky          0x1e90ff 0x0099ff */
      |     {           }
  318 |    153,  51, 255, /* perm colors 26: purple        0x9b30ff 0x9933ff */
      |    {            }
  319 |      0, 255,   0, /* SS colors 27: helix, green   0x00ff00 - */
      |      {          }
  320 |    255, 204,   0, /* SS colors 28: strand, gold   0xffa500 0xffcc00 */
      |    {            }
  321 |    255, 102,   0, /* SS colors 29: turn, orange   0xff4500 0xff6600 */
      |    {            }
  322 |      0, 255, 255, /* SS colors 30: coil, cyan     ox00ffff - */
      |      {          }
  323 |    255, 255,   0, /* highlight colors 31: yellow  0xffff00 - */
      |    {            }
  324 |      0,   0,   0 /* background colors 32: black  0x000000 - */
      |      {
  325 |  };
      |  }
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_1’:
ddvcreate.c:493:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  493 |          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
      |                 ^~~~
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_2’:
ddvcreate.c:529:21: warning: variable ‘more’ set but not used [-Wunused-but-set-variable]
  529 |    Boolean          more;
      |                     ^~~~
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_EX2’:
ddvcreate.c:779:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  779 |          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
      |                 ^~~~
ddvcreate.c:690:21: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
  690 |    Boolean          last;
      |                     ^~~~
ddvcreate.c:686:21: warning: variable ‘PopulateTo’ set but not used [-Wunused-but-set-variable]
  686 |    Int4             PopulateTo;
      |                     ^~~~~~~~~~
ddvcreate.c: In function ‘DDV_DisplayNewBLAST’:
ddvcreate.c:1942:16: warning: variable ‘what’ set but not used [-Wunused-but-set-variable]
 1942 | Uint1          what;
      |                ^~~~
ddvcreate.c: In function ‘UDV_BigEncodeIdxFeat4’:
ddvcreate.c:2878:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
 2878 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/ddvcreate.h:143,
                 from ddvcreate.c:245:
ddvcreate.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ddvcreate.c:249:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvcreate.c:2362:16: warning: ‘DDV_DisplayBlastSAP’ defined but not used [-Wunused-function]
 2362 | static Boolean DDV_DisplayBlastSAP(SeqAlignPtr sap, ValNodePtr mask,
      |                ^~~~~~~~~~~~~~~~~~~
ddvcreate.c:525:16: warning: ‘DDV_CreateDisplayFromIndex_2’ defined but not used [-Wunused-function]
  525 | static Boolean DDV_CreateDisplayFromIndex_2(SeqAlignPtr sap, MsaParaGPopListPtr mpplp, Int2 LineSize)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘UAMgrInitBitList’:
ddvcreate.c:1141:11: warning: ‘stop_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1141 |  ubd->from=Start;
      |  ~~~~~~~~~^~~~~~
ddvcreate.c:1158:73: note: ‘stop_middle’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                                                                         ^~~~~~~~~~~
ddvcreate.c:1195:4: warning: ‘start_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1195 |    UABitDescrInit(&uamp->ubd[0],0,start_middle-1,TRUE);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c:1201:60: warning: ‘halfBspLengthSeqR’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1201 |    UABitDescrInit(&uamp->ubd[1],halfBspLengthSeqL,MaxLength-halfBspLengthSeqR-1,TRUE);
      |                                                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~
ddvcreate.c:1200:50: warning: ‘halfBspLengthSeqL’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1200 |    UABitDescrInit(&uamp->ubd[0],BspStart,BspStart+halfBspLengthSeqL-1,FALSE);
      |                                          ~~~~~~~~^~~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘DDV_PopulateDisplayForDisc’:
ddvcreate.c:1048:16: warning: ‘vnp_para’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1048 |   vnp_list[n-1]=vnp_para;
      |   ~~~~~~~~~~~~~^~~~~~~~~
ddvcreate.c: In function ‘UABuildDescriptor2’:
ddvcreate.c:1541:13: warning: ‘stopcopy’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1541 |   *TotLength+=(stopcopy-startcopy);/*to be used for the display coord. system*/
      |             ^~
ddvcreate.c: In function ‘DDV_DumpSAPInAFile’:
ddvcreate.c:1798:2: warning: ‘matrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1798 |  DDV_AffichageParaG(mpplp,0,0,mpplp->LengthAli-1,mpplp->LengthAli,0,option,
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1799 |   LineSize,hFile,byteSpp,matrix,gclr,NULL);
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘DDV_ReadSeqBin’:
ddvcreate.c:2593:9: warning: ‘btr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2593 |  return btr;
      |         ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jsavlt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/jsavlt.h:4,
                 from jsavlt.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF needleman.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/needleman.h:40,
                 from needleman.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
needleman.c: In function ‘NeedlemanWunschQuadraticByLoc’:
needleman.c:281:24: warning: variable ‘bestDbPos’ set but not used [-Wunused-but-set-variable]
  281 |     Int4 bestQueryPos, bestDbPos; /*position ending best score in
      |                        ^~~~~~~~~
needleman.c:281:10: warning: variable ‘bestQueryPos’ set but not used [-Wunused-but-set-variable]
  281 |     Int4 bestQueryPos, bestDbPos; /*position ending best score in
      |          ^~~~~~~~~~~~
needleman.c: In function ‘FetchSequenceByLoc’:
needleman.c:243:12: warning: ‘query’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  243 |     return query;
      |            ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF txalign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
txalign.c: In function ‘addLinkoutForDefline’:
txalign.c:188:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable]
  188 |     Boolean hasLinkout=FALSE;
      |             ^~~~~~~~~~
txalign.c: In function ‘addLinkoutForBioseq’:
txalign.c:256:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable]
  256 |     Boolean hasLinkout=FALSE;
      |             ^~~~~~~~~~
txalign.c: In function ‘DrawTextToBuffer’:
txalign.c:1254:88: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 1254 |        snprintf(checkboxBuf, 200, "<input type=\"checkbox\" name=\"getSeqGi\" value=\"%d\" onClick=\"synchronizeCheck(this.value, 'getSeqAlignment%d', 'getSeqGi', this.checked)\">", sip->data.intvalue, query_number_glb);
      |                                                                                       ~^                                                                                              ~~~~~~~~~~~~~~~~~~
      |                                                                                        |                                                                                                       |
      |                                                                                        int                                                                                                     Nlm_Int8 {aka long long int}
      |                                                                                       %lld
txalign.c: In function ‘load_align_sum_for_StdSeg’:
txalign.c:2230:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2230 |             if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
      |                 ^~~
txalign.c: In function ‘ShowAlignNodeText2Ex’:
txalign.c:3030:13: warning: variable ‘is_end’ set but not used [-Wunused-but-set-variable]
 3030 |     Boolean is_end, strip_semicolon=TRUE;
      |             ^~~~~~
txalign.c: In function ‘Tx_PrintDefLine’:
txalign.c:4079:7: warning: unused variable ‘seqid_length’ [-Wunused-variable]
 4079 |  Int4 seqid_length = 0, total_length = 0;
      |       ^~~~~~~~~~~~
txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath’:
txalign.c:4494:39: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 4494 |             } else if (bestid != NULL && !(options & TXALIGN_NO_DUMPGNL) || (options & TXALIGN_NO_ENTREZ))
      |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4498:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 4498 |                             if (bsp = BioseqLockById(bestid)) {
      |                                 ^~~
txalign.c:4200:10: warning: unused variable ‘ColumnDistance’ [-Wunused-variable]
 4200 |     Int2 ColumnDistance=2, extraSpace=0, extraSpace2=0, strLen=0, maxEvalWidth=5, maxNWidth=2;
      |          ^~~~~~~~~~~~~~
txalign.c:4192:43: warning: unused variable ‘sip_list’ [-Wunused-variable]
 4192 |     SeqIdPtr bestid, gi_list, subject_id, sip_list=NULL, last_id;
      |                                           ^~~~~~~~
txalign.c:4188:17: warning: variable ‘ptr_start’ set but not used [-Wunused-but-set-variable]
 4188 |     Char *ptr, *ptr_start, *eval_buff_ptr, *bit_score_buff_ptr;
      |                 ^~~~~~~~~
txalign.c: In function ‘FormatScoreFromSeqAlignEx’:
txalign.c:4817:25: warning: unused variable ‘t_adj’ [-Wunused-variable]
 4817 |         Int4 m_adj = 0, t_adj = 0;
      |                         ^~~~~
txalign.c:4816:29: warning: unused variable ‘last_t_to’ [-Wunused-variable]
 4816 |         Int4 last_m_to = 0, last_t_to = 0;
      |                             ^~~~~~~~~
txalign.c: In function ‘FSFPrintOneDefline’:
txalign.c:4925:14: warning: variable ‘seqid_len’ set but not used [-Wunused-but-set-variable]
 4925 |     Int4 gi, seqid_len = 0;
      |              ^~~~~~~~~
txalign.c: In function ‘FormatScoreFunc’:
txalign.c:5142:13: warning: variable ‘allocated’ set but not used [-Wunused-but-set-variable]
 5142 |     Boolean allocated, first;
      |             ^~~~~~~~~
txalign.c: In function ‘OOFShowSingleAlignment’:
txalign.c:5808:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 5808 |             else if(matrix[line1[line_index]][line2[line_index]] > 0)
      |                            ~~~~~^~~~~~~~~~~~
txalign.c:5808:52: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 5808 |             else if(matrix[line1[line_index]][line2[line_index]] > 0)
      |                                               ~~~~~^~~~~~~~~~~~
txalign.c:5575:13: warning: variable ‘lines’ set but not used [-Wunused-but-set-variable]
 5575 |     Int4 i, lines, k, shift_info = 0;
      |             ^~~~~
txalign.c: In function ‘OOFDisplayTraceBack1’:
txalign.c:6063:33: warning: unused variable ‘st’ [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:6063:9: warning: unused variable ‘tmp’ [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |         ^~~
txalign.c: In function ‘OOFDisplayTraceBack2’:
txalign.c:6137:33: warning: unused variable ‘st’ [-Wunused-variable]
 6137 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c: In function ‘FDGetTaxNamesFromBioseq’:
txalign.c:6239:21: warning: variable ‘bdsp’ set but not used [-Wunused-but-set-variable]
 6239 |     BlastDefLinePtr bdsp;
      |                     ^~~~
txalign.c: At top level:
txalign.c:310:19: warning: ‘ProcessTextInsertion’ declared ‘static’ but never defined [-Wunused-function]
  310 | static ValNodePtr ProcessTextInsertion PROTO((AlignNodePtr anp, Int4 m_left, Int4 m_right, BioseqPtr bsp, Int4 line_len, Int1 frame));
      |                   ^~~~~~~~~~~~~~~~~~~~
txalign.c:6137:33: warning: ‘st’ defined but not used [-Wunused-variable]
 6137 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:6063:9: warning: ‘tmp’ defined but not used [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |         ^~~
txalign.c:6063:33: warning: ‘st’ defined but not used [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:2915:1: warning: ‘get_seq_id’ defined but not used [-Wunused-function]
 2915 | get_seq_id(SeqAlignPtr sap, Int2 index)
      | ^~~~~~~~~~
txalign.c:1820:16: warning: ‘has_hit_in_region’ defined but not used [-Wunused-function]
 1820 | static Boolean has_hit_in_region(Uint1Ptr all_frame)
      |                ^~~~~~~~~~~~~~~~~
txalign.c:112:16: warning: ‘getNameInitials’ defined but not used [-Wunused-function]
  112 | static CharPtr getNameInitials(CharPtr name){
      |                ^~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
txalign.c: In function ‘DrawTextToBuffer’:
../include/ncbistr.h:331:19: warning: ‘HTML_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
txalign.c:1094:10: note: ‘HTML_buffer’ was declared here
 1094 |  CharPtr HTML_buffer;
      |          ^~~~~~~~~~~
txalign.c: In function ‘OOFShowSingleAlignment.constprop’:
txalign.c:73:17: warning: ‘pro_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   73 | #define fprintf tx_fprintf
      |                 ^~~~~~~~~~
txalign.c:5571:48: note: ‘pro_line_start’ was declared here
 5571 |     Int4 dna_index, pro_index, dna_line_start, pro_line_start;
      |                                                ^~~~~~~~~~~~~~
txalign.c:73:17: warning: ‘dna_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   73 | #define fprintf tx_fprintf
      |                 ^~~~~~~~~~
txalign.c:5571:32: note: ‘dna_line_start’ was declared here
 5571 |     Int4 dna_index, pro_index, dna_line_start, pro_line_start;
      |                                ^~~~~~~~~~~~~~
txalign.c: In function ‘find_score_in_align’:
txalign.c:2080:35: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2080 |                       stdaa_res = SeqMapTableConvert(smtp, t_res);
      |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:1980:20: note: ‘smtp’ was declared here
 1980 |     SeqMapTablePtr smtp;
      |                    ^~~~
txalign.c:1945:13: warning: ‘t_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1945 |             SeqPortFree(t_spp);
      |             ^~~~~~~~~~~~~~~~~~
txalign.c:1876:23: note: ‘t_spp’ was declared here
 1876 |     SeqPortPtr m_spp, t_spp;
      |                       ^~~~~
txalign.c:1942:11: warning: ‘m_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1942 |         if(m_spp == NULL)
      |           ^
txalign.c:1876:16: note: ‘m_spp’ was declared here
 1876 |     SeqPortPtr m_spp, t_spp;
      |                ^~~~~
txalign.c: In function ‘ShowAlignNodeText2Ex.constprop’:
txalign.c:1753:28: warning: ‘m_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1753 |      n = MAX(0, (master_len-1 - m_stop)/3 -1);
      |                            ^
txalign.c:3025:10: note: ‘m_len’ was declared here
 3025 |     Int4 m_len;   /*length of the master sequence*/
      |          ^~~~~
txalign.c: In function ‘ShowTextAlignFromAnnot3’:
txalign.c:949:12: warning: ‘retval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  949 |     return retval;
      |            ^~~~~~
txalign.c: In function ‘FormatScoreFunc’:
txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=]
 4747 |    sprintf(buffer, "%d", frame);
      |                     ^~
txalign.c:4747:20: note: directive argument in the range [-32768, 32767]
 4747 |    sprintf(buffer, "%d", frame);
      |                    ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=]
 4743 |    sprintf(buffer, "+%d", frame);
      |                      ^~
txalign.c:4743:20: note: directive argument in the range [-32768, 32767]
 4743 |    sprintf(buffer, "+%d", frame);
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=]
 4747 |    sprintf(buffer, "%d", frame);
      |                     ^~
txalign.c:4747:20: note: directive argument in the range [-32768, 32767]
 4747 |    sprintf(buffer, "%d", frame);
      |                    ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=]
 4743 |    sprintf(buffer, "+%d", frame);
      |                      ^~
txalign.c:4743:20: note: directive argument in the range [-32768, 32767]
 4743 |    sprintf(buffer, "+%d", frame);
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=]
 4747 |    sprintf(buffer, "%d", frame);
      |                     ^~
txalign.c:4747:20: note: directive argument in the range [-32768, 32767]
 4747 |    sprintf(buffer, "%d", frame);
      |                    ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=]
 4743 |    sprintf(buffer, "+%d", frame);
      |                      ^~
txalign.c:4743:20: note: directive argument in the range [-32768, 32767]
 4743 |    sprintf(buffer, "+%d", frame);
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4747:21: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 5 [-Wformat-overflow=]
 4747 |    sprintf(buffer, "%d", frame);
      |                     ^~
txalign.c:4747:20: note: directive argument in the range [-32768, 32767]
 4747 |    sprintf(buffer, "%d", frame);
      |                    ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4743:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size 4 [-Wformat-overflow=]
 4743 |    sprintf(buffer, "+%d", frame);
      |                      ^~
txalign.c:4743:20: note: directive argument in the range [-32768, 32767]
 4743 |    sprintf(buffer, "+%d", frame);
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 8 bytes into a destination of size 5
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath.part.0’:
txalign.c:4647:50: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=]
 4647 |                     sprintf(buffer1, "<a href = #%s>%s</a>", id_buffer, bit_score_buff_ptr);
      |                                                  ^~          ~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 17 and 2074 bytes into a destination of size 2049
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4645:51: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2037 [-Wformat-overflow=]
 4645 |                     sprintf(buffer1, " <a href = #%s>%s</a>", id_buffer, bit_score_buff_ptr);
      |                                                   ^~          ~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 18 and 2074 bytes into a destination of size 2049
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fdlobj.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from fdlobj.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
fdlobj.c: In function ‘BlastDefLineSetAsnRead’:
fdlobj.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
fdlobj.c: In function ‘BlastDefLineAsnRead’:
fdlobj.c:202:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  202 |    AsnReadFunc func;
      |                ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignmgr2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/alignmgr2.h:110,
                 from alignmgr2.c:242:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignmgr2.c: In function ‘AlnMgr2IndexSingleDenseSegSA’:
alignmgr2.c:885:13: warning: statement with no effect [-Wunused-value]
  885 |             for (j; j<dsp->numseg && next == -1; j++)
      |             ^~~
alignmgr2.c: In function ‘AlnMgr2CopySeg’:
alignmgr2.c:2984:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2984 |       if (ldelta = ABS(s->beg - beg)) {
      |           ^~~~~~
alignmgr2.c: In function ‘AlnMgr2AddInNewPairwiseSA’:
alignmgr2.c:3221:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3221 |   while (a = AlnMgr2GetNextSeqPiece(a)) {
      |          ^
alignmgr2.c:3223:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3223 |     while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
      |            ^
alignmgr2.c:3233:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3233 |   while (A = AlnMgr2GetNextSeqPiece(A)) {
      |          ^
alignmgr2.c:3237:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3237 |       while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
      |              ^
alignmgr2.c: In function ‘AlnMgr2SetUnaln’:
alignmgr2.c:5410:22: warning: variable ‘dsp’ set but not used [-Wunused-but-set-variable]
 5410 |    DenseSegPtr       dsp;
      |                      ^~~
alignmgr2.c: In function ‘AlnMgr2PrintSeqAlign’:
alignmgr2.c:5623:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 5623 |          while (more = AlnMgr2GetNextAlnBit(sap, amp))
      |                 ^~~~
alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’:
alignmgr2.c:5719:21: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
 5719 |    Boolean          found;
      |                     ^~~~~
alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’:
alignmgr2.c:6085:22: warning: variable ‘saip’ set but not used [-Wunused-but-set-variable]
 6085 |    SAIndex2Ptr       saip;
      |                      ^~~~
alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’:
alignmgr2.c:6331:7: warning: statement with no effect [-Wunused-value]
 6331 |       for (i; i<interrupt->segnum; i++)
      |       ^~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLength’:
alignmgr2.c:6774:20: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 6774 |    if (saip->unaln == FALSE || fill_in == FALSE)
      |                    ^~
alignmgr2.c:6774:8: note: did you mean to dereference the pointer?
 6774 |    if (saip->unaln == FALSE || fill_in == FALSE)
      |        ^
alignmgr2.c: In function ‘AlnMgr2ComputeScoreForSeqAlign’:
alignmgr2.c:8341:17: warning: variable ‘numseqs’ set but not used [-Wunused-but-set-variable]
 8341 |    Int4         numseqs;
      |                 ^~~~~~~
alignmgr2.c:8339:17: warning: variable ‘mismatch’ set but not used [-Wunused-but-set-variable]
 8339 |    Int4         mismatch;
      |                 ^~~~~~~~
alignmgr2.c:8338:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 8338 |    Int4         len;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from alignmgr2.c:242:
alignmgr2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignmgr2.c:3557:13: warning: ‘AlnMgr2AddInNewSA’ defined but not used [-Wunused-function]
 3557 | static void AlnMgr2AddInNewSA(SeqAlignPtr parent, SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~
alignmgr2.c:2368:18: warning: ‘AlnMgr2GetEdgeList’ defined but not used [-Wunused-function]
 2368 | static AMEdgePtr AlnMgr2GetEdgeList(Int4 vertexnum, AMEdgePtr edge_head, AMEdgePtr already_used)
      |                  ^~~~~~~~~~~~~~~~~~
alignmgr2.c:2140:13: warning: ‘AlnMgr2SortVerticesByNumEdges’ defined but not used [-Wunused-function]
 2140 | static void AlnMgr2SortVerticesByNumEdges(AMVertexPtr PNTR vertexarray, Int4 numvertices)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:1061:13: warning: ‘AlnMgr2UnpackSeqAlignChain’ defined but not used [-Wunused-function]
 1061 | static void AlnMgr2UnpackSeqAlignChain(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2IndexLite’:
alignmgr2.c:1001:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1001 |             sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:968:17: note: ‘sap_segs_prev’ was declared here
  968 |    SeqAlignPtr  sap_segs_prev;
      |                 ^~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’:
alignmgr2.c:6122:54: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6122 |             *from = dsp->starts[dsp->dim*i+row-1]+dsp->lens[i];
      |                                                   ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetMaxUnalignedLength’:
alignmgr2.c:7068:23: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7068 |       for (i=0; i<saip->srdp[row]->numunaln && !found; i++)
      |                   ~~~~^~~~~~
alignmgr2.c:7077:19: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7077 |    for (i=0; i<dsp->dim; i++)
      |                ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’:
alignmgr2.c:6353:16: warning: ‘iip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6353 |    iip->strand = strand;
      |    ~~~~~~~~~~~~^~~~~~~~
alignmgr2.c:6182:19: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6182 |       trans = saip->srdp[saip->anchor-1]->sect;
      |               ~~~~^~~~~~
alignmgr2.c:6337:48: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6337 |                iip->starts[k] = dsp->starts[dsp->dim*i + interrupt->row-1];
      |                                             ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthSeqRangeInSA’:
alignmgr2.c:6478:15: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6478 |    srdp = saip->srdp[n-1];
      |           ~~~~^~~~~~
alignmgr2.c:6485:43: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6485 |       beg = dsp->starts[srdp->sect[0]*(dsp->dim) + n-1];
      |                                       ~~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthRowSpanInSA’:
alignmgr2.c:6550:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6550 |       *start = saip->aligncoords[i];
      |                ~~~~^~~~~~~~~~~~~
alignmgr2.c:6558:41: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6558 |       *stop = saip->aligncoords[i] + dsp->lens[srdp->sect[srdp->numsect-1]] - 1;
      |                                      ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLength’:
alignmgr2.c:6789:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6789 |          len += AlnMgr2GetMaxUnalignedLength(salp, i);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:6780:24: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6780 |          lastseg = saip->srdp[saip->anchor-1]->sect[saip->srdp[saip->anchor-1]->numsect-1];
      |                    ~~~~^~~~~~
alignmgr2.c:6788:20: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6788 |          len += dsp->lens[i];
      |                 ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’:
alignmgr2.c:6025:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6025 |    if (saip->anchor <= 0)
      |        ~~~~^~~~~~~~
alignmgr2.c:6017:29: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6017 |          amp->from_row = dsp->starts[trans[stop_sect]*dsp->dim+amp->row_num-1] + endoffset;
      |                          ~~~^~~~~~~~
alignmgr2.c: In function ‘AlnMgr2IsSAPDiscAli’:
alignmgr2.c:6813:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6813 |    if (saip->numunaln > 0)
      |        ~~~~^~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNumAlnBlocks’:
alignmgr2.c:6836:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6836 |    if (saip->numunaln >= 0)
      |        ~~~~^~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthBlockRange’:
alignmgr2.c:6870:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6870 |       *start = saip->aligncoords[saip->unaln[n-1]+1];
      |                ~~~~^~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthUnalignedForNthRow’:
alignmgr2.c:6911:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6911 |    if (saip->numunaln == -1 || unaligned > saip->numunaln)
      |        ~~~~^~~~~~~~~~
alignmgr2.c:6932:19: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6932 |       *start = dsp->starts[(saip->srdp[row-1]->unaligned[i]+1)*dsp->dim+row-1] + dsp->lens[(saip->srdp[row-1]->unaligned[i])];
      |                ~~~^~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNextLengthBit’:
alignmgr2.c:7019:26: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7019 |             maxseg = saip->unaln[*seg];
      |                      ~~~~^~~~~~~
alignmgr2.c:7024:26: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7024 |             (*len) += dsp->lens[i];
      |                       ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNumSegsInRange’:
alignmgr2.c:7185:62: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7185 |    start = binary_search_on_uint4_list(aligncoords, from, dsp->numseg);
      |                                                           ~~~^~~~~~~~
alignmgr2.c:6045:15: warning: ‘aligncoords’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6045 |       if (list[mid + 1] <= pos)
      |               ^
alignmgr2.c:7150:21: note: ‘aligncoords’ was declared here
 7150 |    Uint4Ptr         aligncoords;
      |                     ^~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlign’:
alignmgr2.c:7652:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7652 |    if (saip->anchor > 0)
      |        ~~~~^~~~~~~~
alignmgr2.c:7649:51: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7649 |    offset = pos - dsp->starts[(srdp->sect[L])*(dsp->dim)+row-1];
      |                                               ~~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseq’:
alignmgr2.c:7715:67: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7715 |    sect = binary_search_on_uint4_list(saip->aligncoords, pos, saip->numseg);
      |                                                               ~~~~^~~~~~~~
alignmgr2.c:7728:36: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7728 |       return (dsp->starts[sect*(dsp->dim)+row-1] + offset);
      |                                ~~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetSubAlign’:
alignmgr2.c:7554:26: warning: ‘sap_real’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7554 |    if (sap == NULL || sap->saip == NULL)
      |                       ~~~^~~~~~
alignmgr2.c:7999:21: note: ‘sap_real’ was declared here
 7999 |    SeqAlignPtr      sap_real;
      |                     ^~~~~~~~
alignmgr2.c: In function ‘AlnMgr2FillInUnaligned’:
alignmgr2.c:9869:12: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9869 |       curr = curr + 1 + offset;
      |       ~~~~~^~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlignStdSeg’:
alignmgr2.c:10175:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10175 |    stop1 = SeqLocStop(slp_longest);
      |            ^~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseqStdSeg’:
alignmgr2.c:10209:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10209 |    stop1 = SeqLocStop(slp_longest);
      |            ^~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLengthStdSeg’:
alignmgr2.c:10236:12: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10236 |    return (SeqLocLen(slp_longest));
      |           ~^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alnread.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF acerdapi.c
acerdapi.c: In function ‘DoesSeqStringMatchBsp’:
acerdapi.c:201:30: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable]
  201 |   Int4 ctr, pos = 0, i, len, seq_len;
      |                              ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from acerdapi.c:40:
acerdapi.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aceread.c
aceread.c:3308:12: warning: ‘s_GetUngappedPosition’ defined but not used [-Wunused-function]
 3308 | static int s_GetUngappedPosition (int gapped_pos, char *seq)
      |            ^~~~~~~~~~~~~~~~~~~~~
aceread.c:276:13: warning: ‘AdjustGapInfoFor3Trim’ defined but not used [-Wunused-function]
  276 | static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len)
      |             ^~~~~~~~~~~~~~~~~~~~~
aceread.c:247:13: warning: ‘AdjustGapInfoFor5Trim’ defined but not used [-Wunused-function]
  247 | static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim)
      |             ^~~~~~~~~~~~~~~~~~~~~
aceread.c:134:12: warning: ‘s_IsGapChar’ defined but not used [-Wunused-function]
  134 | static int s_IsGapChar (char ch, char *gap_chars)
      |            ^~~~~~~~~~~
aceread.c: In function ‘s_ReadContig’:
aceread.c:1477:12: warning: ‘linestring’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1477 |         if (linestring != NULL) free (linestring);
      |            ^
rm -f libncbiobj.a
ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiobj.a ../lib
ranlib ../lib/libncbiobj.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdentrez.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdentrez.c:283:23: warning: ‘CdEntMlSumGet’ declared ‘static’ but never defined [-Wunused-function]
  283 | static DocSumPtr NEAR CdEntMlSumGet PROTO((Int4 uid));
      |                       ^~~~~~~~~~~~~
cdentrez.c:310:23: warning: ‘CdEntSeqSumGet’ declared ‘static’ but never defined [-Wunused-function]
  310 | static DocSumPtr NEAR CdEntSeqSumGet PROTO((Int4 uid, DocType type));
      |                       ^~~~~~~~~~~~~~
cdentrez.c:2935:23: warning: ‘MedSumAsnRead’ defined but not used [-Wunused-function]
 2935 | static DocSumPtr NEAR MedSumAsnRead (AsnIoPtr aip, DocUid uid)
      |                       ^~~~~~~~~~~~~
cdentrez.c:1616:26: warning: ‘FreePostingList’ defined but not used [-Wunused-function]
 1616 | static ByteStorePtr NEAR FreePostingList (ByteStorePtr lst)
      |                          ^~~~~~~~~~~~~~~
cdentrez.c:307:20: warning: ‘BIOSEQ_id_E’ defined but not used [-Wunused-variable]
  307 | static AsnTypePtr  BIOSEQ_id_E = NULL;
      |                    ^~~~~~~~~~~
cdentrez.c: In function ‘CdEntrezMergeTerm’:
cdentrez.c:2675:17: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2675 |           *totl = total;
      |           ~~~~~~^~~~~~~
cdentrez.c:2672:17: warning: ‘special’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2672 |           *spcl = special;
      |           ~~~~~~^~~~~~~~~
cdentrez.c:2640:5: warning: ‘termpage’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2640 |     cd3_CdTermScan (db, fld, termpage, (Int4)0, ScanAndFreeProc);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
In function ‘strncpy’,
    inlined from ‘FindTermNode’ at cdentrez.c:1813:11,
    inlined from ‘CdEntTLAddTerm’ at cdentrez.c:617:14,
    inlined from ‘CdEntTLAddTerm’ at cdentrez.c:600:24:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdEntTLAddTerm’:
cdentrez.c:1895:24: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1895 |             if (scanOk && total > 0) {
      |                 ~~~~~~~^~~~~~~~~~~~
cdentrez.c:1787:13: note: ‘total’ was declared here
 1787 |   Int4      total;
      |             ^~~~~
cdentrez.c: In function ‘CdLinkUidList’:
cdentrez.c:938:9: warning: ‘count’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  938 |  return count;
      |         ^~~~~
cdentrez.c: In function ‘CdTermListByTerm’:
cdentrez.c:1036:12: warning: ‘first’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1036 |    rsult = cd3_CdTermScan(type,field,first,0,TermListTermScanProc);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
cdentrez.c: In function ‘CdEntrezFindTerm’:
../include/ncbimem.h:232:23: warning: ‘ctp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
cdentrez.c:1100:12: note: ‘ctp’ was declared here
 1100 |  CdTermPtr ctp;
      |            ^~~
cdentrez.c: In function ‘CdEntMedlineEntryListGet’:
cdentrez.c:2720:6: warning: ‘aip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2720 |      cd3_CdDocAsnClose(aip);
      |      ^~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdSeqSumAsnRead’:
cdentrez.c:3424:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3424 |             sprintf (cds, " cds%d", (int) proteins);
      |                                  ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdromlib.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdromlib.c:73:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdnewlib.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdnewlib.c:600:27: warning: missing braces around initializer [-Wmissing-braces]
  600 | struct CdFInfo _finfo[] = {
      |                           ^
  601 |  "", 0, 0,
      |  {       }
  602 |  "hca", MAGIC_hca, FORMAT_hca,
      |  {                           }
  603 |  "sum", MAGIC_sum, FORMAT_sum,
      |  {                           }
  604 |  "lnk", MAGIC_lnk, FORMAT_lnk,
      |  {                           }
  605 |  "ofs", MAGIC_ofs, FORMAT_ofs,
      |  {                           }
  606 |  "oix", MAGIC_oix, FORMAT_oix,
      |  {                           }
  607 |  "trm", MAGIC_trm, FORMAT_trm,
      |  {                           }
  608 |  "tix", MAGIC_tix, FORMAT_tix,
      |  {                           }
  609 |  "pst", MAGIC_pst, FORMAT_pst,
      |  {                           }
  610 |  "inf", MAGIC_inf, FORMAT_inf
      |  {
  611 | };
      | }
cdnewlib.c:614:27: warning: missing braces around initializer [-Wmissing-braces]
  614 | struct CdDirInfo _dir[] = {
      |                           ^
cdnewlib.c: In function ‘cd3_CdDocAsnOpen’:
cdnewlib.c:1327:9: warning: unused variable ‘fdir’ [-Wunused-variable]
 1327 |   char *fdir = NULL;
      |         ^~~~
cdnewlib.c: In function ‘CdDevice_Init’:
cdnewlib.c:2739:6: warning: variable ‘cd_num’ set but not used [-Wunused-but-set-variable]
 2739 |  int cd_num;
      |      ^~~~~~
At top level:
cdnewlib.c:3605:13: warning: ‘Cache_Purge’ defined but not used [-Wunused-function]
 3605 | static void Cache_Purge (Cache *cache)
      |             ^~~~~~~~~~~
cdnewlib.c:3592:14: warning: ‘Cache_Peek’ defined but not used [-Wunused-function]
 3592 | static void* Cache_Peek (Cache *cache, long id)
      |              ^~~~~~~~~~
cdnewlib.c:3569:12: warning: ‘Cache_Touch’ defined but not used [-Wunused-function]
 3569 | static int Cache_Touch (Cache *cache, long id)
      |            ^~~~~~~~~~~
cdnewlib.c:3506:12: warning: ‘Cache_Delete’ defined but not used [-Wunused-function]
 3506 | static int Cache_Delete (Cache *cache, long id)
      |            ^~~~~~~~~~~~
cdnewlib.c:638:18: warning: ‘_div’ defined but not used [-Wunused-variable]
  638 | static DivInfo * _div;
      |                  ^~~~
cdnewlib.c:582:15: warning: ‘_empty_string’ defined but not used [-Wunused-variable]
  582 | static char * _empty_string = "";
      |               ^~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
In function ‘strncat’,
    inlined from ‘CdDevice_FileBuildPath.part.0.isra’ at cdnewlib.c:2679:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-overflow=]
cdnewlib.c: In function ‘UnixFileGets’:
cdnewlib.c:1509:6: warning: ‘ch’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1509 |   if (ch == '\0') {
      |      ^
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdnewlib.c: In function ‘TrmIndex_Lookup’:
cdnewlib.c:2166:12: warning: ‘d’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2166 |  for ( ; d <= 0 && mid >0; --mid)
      |          ~~^~~~
cdnewlib.c:2168:27: warning: ‘term’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2168 |   if (d==0 && len == (int)strlen(term))
      |                           ^~~~~~~~~~~~
cdnewlib.c:2166:28: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2166 |  for ( ; d <= 0 && mid >0; --mid)
      |                            ^~~~~
cdnewlib.c: In function ‘UidIndex_Lookup’:
cdnewlib.c:1986:20: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1986 |  page_num = (uid < *p && mid >0) ? mid-1 : mid;
      |                    ^~
cdnewlib.c:1986:42: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1986 |  page_num = (uid < *p && mid >0) ? mid-1 : mid;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF casn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from casn.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdconfig.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cdconfig.c:75:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/ncbi.h:58,
                 from cdconfig.c:75:
cdconfig.c: In function ‘ChangeMedia’:
../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value]
  247 | #define FALSE ((Nlm_Boolean)0)
      |               ^
../include/ncbifile.h:144:76: note: in expansion of macro ‘FALSE’
  144 | #define EjectCd(sVolume, deviceName, rawDeviceName, mountPoint, mountCmd)  FALSE
      |                                                                            ^~~~~
cdconfig.c:941:29: note: in expansion of macro ‘EjectCd’
  941 |                             EjectCd(toBeEjected->entrez_info->volume_label,
      |                             ^~~~~~~
../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value]
  247 | #define FALSE ((Nlm_Boolean)0)
      |               ^
../include/ncbifile.h:145:76: note: in expansion of macro ‘FALSE’
  145 | #define MountCd(sVolume, deviceName, mountPoint, mountCmd)                 FALSE
      |                                                                            ^~~~~
cdconfig.c:960:17: note: in expansion of macro ‘MountCd’
  960 |                 MountCd(newMedia->entrez_info->volume_label, cdm->device_name,
      |                 ^~~~~~~
cdconfig.c: At top level:
cdconfig.c:191:17: warning: ‘UnMarkLRUineligible’ declared ‘static’ but never defined [-Wunused-function]
  191 | static void     UnMarkLRUineligible       PROTO((void));
      |                 ^~~~~~~~~~~~~~~~~~~
cdconfig.c: In function ‘EntrezInfoMerge’:
cdconfig.c:1257:45: warning: ‘besttype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1257 |                                     besttype->fields[f].num_terms;
      |                                     ~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/cdrom.h:9,
                 from objentr.c:102:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objentr.c: In function ‘CdRomAsnLoad’:
objentr.c:170:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  170 |     if (loaded)
      |     ^~
objentr.c:172:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  172 |         loaded = TRUE;
      |         ^~~~~~
objentr.c: In function ‘DocSumAsnRead’:
objentr.c:970:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  970 |    AsnReadFunc func;
      |                ^~~~
objentr.c:969:12: warning: unused variable ‘isError’ [-Wunused-variable]
  969 |    Boolean isError = FALSE;
      |            ^~~~~~~
At top level:
objentr.c:806:23: warning: ‘EntrezDivInfo_Destruct’ defined but not used [-Wunused-function]
  806 | static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div)
      |                       ^~~~~~~~~~~~~~~~~~~~~~
objentr.c:771:16: warning: ‘EntrezLinkInfo_AsnWrite’ defined but not used [-Wunused-function]
  771 | static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
objentr.c: In function ‘EntrezInfoAsnRead’:
objentr.c:392:4: warning: ‘div’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  392 |    EntrezDivInfo_AsnRead(div++,stream,atp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
objentr.c:763:17: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  763 |  link->datasize = (int) val.intvalue;
      |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
objentr.c:240:18: note: ‘link’ was declared here
  240 |  EntrezLinkInfo *link;
      |                  ^~~~
objentr.c:704:19: warning: ‘fld’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  704 |    fld->post_type = (PostType) val.intvalue;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
objentr.c:239:19: note: ‘fld’ was declared here
  239 |  EntrezFieldInfo *fld;
      |                   ^~~
objentr.c:649:18: warning: ‘tinf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  649 |    tinf->asntype = (char*) val.ptrvalue;
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
objentr.c:238:18: note: ‘tinf’ was declared here
  238 |  EntrezTypeInfo *tinf;
      |                  ^~~~
objentr.c:856:16: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  856 |     div->docs[i++] = val.intvalue;
      |               ~^~
objentr.c:824:7: note: ‘i’ was declared here
  824 |   int i;
      |       ^
rm -f libncbicdr.a
ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicdr.a ../lib
ranlib ../lib/libncbicdr.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibbutns.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibbutns.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibbutns.c: In function ‘Nlm_CheckCallback’:
vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  354 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_RadioCallback’:
vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  373 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_SetButtonStatus’:
vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  694 |   Nlm_Int2         val;
      |                    ^~~
vibbutns.c: In function ‘Nlm_NewButton.constprop’:
vibbutns.c:1159:3: warning: ‘call’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1159 |   XtAddCallback (c, call, Nlm_ButtonCallback, (XtPointer) b);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibextra.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibextra.c:87:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibextra.c: In function ‘Nlm_RGB2HSL.constprop’:
vibextra.c:1219:13: warning: ‘min’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1219 |     i++; if ( i > 2 ) i=0;
      |             ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibfiles.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibfiles.c: In function ‘Nlm_WriteCard’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_WriteInt’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_CardToStr’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_IntToStr’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibforms.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibforms.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibgroup.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibgroup.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viblists.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from viblists.c:164:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
viblists.c: In function ‘Nlm_SetListPosition’:
viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable]
 1121 |   Nlm_Boolean is_realized;
      |               ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmenus.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmenus.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmenus.c: In function ‘Nlm_IsMenuItemChecked’:
vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  563 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_CheckMenuItem’:
vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  591 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableMenuItem’:
vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2006 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2005 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoice’:
vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2072 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceGroup’:
vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2122 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceItem’:
vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2166 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2164 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableMenuItem’:
vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2329 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2328 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoice’:
vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2395 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoiceItem’:
vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2489 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2487 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_RemoveSubMenu’:
vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2627 |   Nlm_MenuTool     h;
      |                    ^
vibmenus.c: In function ‘Nlm_CountMenuItems’:
vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3056 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetMenuItem’:
vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3239 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetPopListTitle’:
vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
 3349 |   Nlm_MenU       m;
      |                  ^
vibmenus.c: In function ‘Nlm_AppendItems’:
vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable]
 3978 |   Nlm_Char      accel;
      |                 ^~~~~
vibmenus.c: In function ‘Nlm_NewPopupList’:
vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable]
 4969 |   Widget          lbl;
      |                   ^~~
vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable]
 4967 |   Pixel           color;
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibprmpt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibprmpt.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibsbars.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibsbars.c:135:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibslate.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibslate.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibslate.c: In function ‘Nlm_EnableSlate’:
vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1199 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_DisableSlate’:
vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1254 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_SelectSlate’:
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
 1515 |     XtVaGetValues (h, XmNbackground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
 1517 |     XtVaGetValues (h, XmNforeground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SelectPanel’:
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
 1544 |   XtVaGetValues (h, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
 1546 |   XtVaGetValues (h, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2026 |   Nlm_SlateTool    h;
      |                    ^
vibslate.c: In function ‘Nlm_SlateClickCallback’:
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
 2157 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
 2159 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateInputCallback’:
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
 2313 |       XtVaGetValues(w, XmNbackground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
 2315 |       XtVaGetValues(w, XmNforeground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
 2359 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
 2361 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_ResetPanel’:
vibslate.c:1390:5: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1390 |     rst ((Nlm_PaneL) p);
      |     ^~~~~~~~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_RemoveSlate’:
vibslate.c:1454:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1454 |       rst (p);
      |       ^~~~~~~
vibslate.c:1450:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1450 |       pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                             ^
vibslate.c:1449:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                       ^
vibslate.c:1449:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                 ^
vibslate.c:1449:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                           ^
vibslate.c:1449:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |      ^
vibslate.c: In function ‘Nlm_ResetSlate’:
vibslate.c:1354:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1354 |       rst (p);
      |       ^~~~~~~
vibslate.c:1347:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1347 |       pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                             ^
vibslate.c:1346:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                       ^
vibslate.c:1346:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                 ^
vibslate.c:1346:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                           ^
vibslate.c:1346:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |      ^
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2215:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |          ^
vibslate.c:2202:20: note: ‘pdata.click’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                               ^
vibslate.c:2202:20: note: ‘pdata.drag’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                     ^
vibslate.c:2202:20: note: ‘pdata.hold’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                           ^
vibslate.c:2202:20: note: ‘pdata.release’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2223:11: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2223 |           drw (p);
      |           ^~~~~~~
vibslate.c:560:18: note: ‘pdata.draw’ was declared here
  560 |   Nlm_PanelData  pdata;
      |                  ^~~~~
vibslate.c:2216:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2216 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                                       ^
vibslate.c:2202:20: note: ‘pdata.reset’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2216:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2216 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                 ^
vibslate.c:2202:20: note: ‘pdata.draw’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2048:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |          ^
vibslate.c:2048:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                               ^
vibslate.c:2048:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                     ^
vibslate.c:2048:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                           ^
vibslate.c:2053:12: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2053 |         if (clk != NULL && Nlm_GetEnabled ((Nlm_GraphiC) p)
      |            ^
vibslate.c:2049:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2049 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                 ^
vibslate.c:2049:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2049 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                                       ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibtexts.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibtexts.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibtexts.c: In function ‘Nlm_TextCallback’:
vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable]
 2982 |   XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
      |                        ^~~
vibtexts.c: In function ‘Nlm_LoseFocusCallback’:
vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 2999 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
vibtexts.c: In function ‘Nlm_TabCallback’:
vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3109 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenReturnCallback’:
vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3122 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenActivateCallback’:
vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 3135 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from vibutils.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibwndws.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibwndws.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibwndws.c: In function ‘Nlm_SetColorMap’:
vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 1060 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibwndws.c: In function ‘Nlm_SetWindowTitle’:
vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1567 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_GetWindowTitle’:
vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1610 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_NewWindow’:
vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable]
 2155 |   int             screen_num;
      |                   ^~~~~~~~~~
vibwndws.c: In function ‘Nlm_HideWindow’:
vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2526 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowNormal’:
vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2969 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowModal’:
vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3014 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowDocument’:
vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3060 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_VibMainPrelude’:
vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable]
 6800 |   Nlm_Int2  retval;
      |             ^~~~~~
vibwndws.c: In function ‘Nlm_RemoveDyingWindows’:
vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 6922 |   Nlm_WindowTool   wptr;
      |                    ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmain.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmain.c:40:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  121 | main (int argc, char *argv[])
      | ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbidraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidraw.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbidraw.c: In function ‘Nlm_SelectFont.part.0’:
ncbidraw.c:500:12: warning: ‘fdata.print’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  500 |     *fdata = *fp;
      |     ~~~~~~~^~~~~
ncbidraw.c:2875:17: note: ‘fdata.print’ was declared here
 2875 |   Nlm_FontData  fdata;
      |                 ^~~~~
ncbidraw.c:2900:9: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2900 |         XSetFont (Nlm_currentXDisplay, Nlm_currentXGC, fdata.handle->fid);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidraw.c: In function ‘Nlm_EraseRect.part.0’:
ncbidraw.c:4464:41: warning: ‘rtool.height’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4464 |                     rtool.width+1, rtool.height+1);
      |                                    ~~~~~^~~~~~~
ncbidraw.c:4464:26: warning: ‘rtool.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4464 |                     rtool.width+1, rtool.height+1);
      |                     ~~~~~^~~~~~
ncbidraw.c:4463:49: warning: ‘rtool.y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4463 |                     rtool.x - Nlm_XOffset, rtool.y - Nlm_YOffset,
      |                                            ~~~~~^~
ncbidraw.c:4463:26: warning: ‘rtool.x’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4463 |                     rtool.x - Nlm_XOffset, rtool.y - Nlm_YOffset,
      |                     ~~~~~^~
ncbidraw.c: In function ‘s_DoQuadrant’:
ncbidraw.c:5618:10: warning: ‘rr.right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5618 |   rx = rr.right  - rr.left;
      |        ~~^~~~~~
ncbidraw.c:5618:22: warning: ‘rr.left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5618 |   rx = rr.right  - rr.left;
      |                    ~~^~~~~
ncbidraw.c:5619:10: warning: ‘rr.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5619 |   ry = rr.bottom - rr.top;
      |        ~~^~~~~~~
ncbidraw.c:5619:22: warning: ‘rr.top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5619 |   ry = rr.bottom - rr.top;
      |                    ~~^~~~
ncbidraw.c: In function ‘Nlm_CleanUpDrawingTools’:
ncbidraw.c:7541:5: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7541 |     XFreeFont (Nlm_currentXDisplay, fdata.handle);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drawing.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from drawing.c:128:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mapping.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from mapping.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapping.c: In function ‘Nlm_MapRectToWorldBox’:
mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable]
  139 |   Int4 curScale;
      |        ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF picture.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from picture.c:100:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewer.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from viewer.c:120:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF document.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from document.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
document.c: In function ‘Nlm_PrintDocument’:
document.c:4419:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4419 |       system (cmmd);
      |       ^~~~~~~~~~~~~
document.c:4423:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4423 |       system (cmmd);
      |       ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF table.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from table.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
table.c: In function ‘TableClick’:
table.c:1017:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1017 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:1017:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1017 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
table.c:1021:13: warning: ‘colRec.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1021 |             actn ((TablE) t, row + 1, column + 1);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
table.c: In function ‘SetTableBlockHilight.part.0’:
table.c:843:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  843 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:843:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  843 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
table.c: In function ‘SetTableBlockGray.part.0’:
table.c:917:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  917 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:917:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  917 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF palette.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from palette.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF diagnost.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from diagnost.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF image.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from image.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
image.c: In function ‘ShiftXMask’:
image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
  840 |         if(!((mask >> hi + low) & (unsigned long)1)) break;
      |                       ~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pictur3d.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/pictur3d.h:49,
                 from ../include/ppict3d.h:49,
                 from pictur3d.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pictur3d.c: In function ‘Nlm_DeleteFromSeg’:
pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  114 |     else seg->first = b->next;
      |     ^~~~
pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  115 |   if ( seg->last == b ) seg->last = bprev;
      |   ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d1.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d2.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d3.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d4.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d5.c:66:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewer3d.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmouse.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibmouse.c:67:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF netscape.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from netscape.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netscape.c: In function ‘NS_Obtain_lock’:
netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable]
  236 |     Bool waited = False;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF imagelst.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/imagelst.h:52,
                 from imagelst.c:61:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF treeview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from treeview.c:91:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF shim3d.c
shim3d.c: In function ‘Nlm_AddHalfWorm3D’:
shim3d.c:3470:46: warning: unused variable ‘tmp’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                              ^~~
shim3d.c:3470:40: warning: unused variable ‘pCz’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                        ^~~
shim3d.c:3470:34: warning: unused variable ‘pCy’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                  ^~~
shim3d.c:3470:28: warning: unused variable ‘pCx’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                            ^~~
shim3d.c:3470:22: warning: unused variable ‘pNz’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                      ^~~
shim3d.c:3470:16: warning: unused variable ‘pNy’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                ^~~
shim3d.c:3470:10: warning: unused variable ‘pNx’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |          ^~~
shim3d.c:3469:47: warning: unused variable ‘Cz’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                               ^~
shim3d.c:3469:42: warning: unused variable ‘Cy’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                          ^~
shim3d.c:3469:37: warning: unused variable ‘Cx’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                     ^~
shim3d.c:3469:32: warning: unused variable ‘Nz’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                ^~
shim3d.c:3469:27: warning: unused variable ‘Ny’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                           ^~
shim3d.c:3469:15: warning: unused variable ‘Nx’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |               ^~
shim3d.c:3468:21: warning: unused variable ‘pi’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |                     ^~
shim3d.c:3468:15: warning: unused variable ‘sinj’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |               ^~~~
shim3d.c:3468:9: warning: unused variable ‘cosj’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |         ^~~~
shim3d.c:3467:33: warning: unused variable ‘prevlen’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                                 ^~~~~~~
shim3d.c:3467:29: warning: unused variable ‘Vz’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                             ^~
shim3d.c:3467:25: warning: unused variable ‘Vy’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                         ^~
shim3d.c:3467:21: warning: unused variable ‘Vx’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                     ^~
shim3d.c:3467:17: warning: unused variable ‘Hz’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                 ^~
shim3d.c:3467:13: warning: unused variable ‘Hy’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |             ^~
shim3d.c:3467:9: warning: unused variable ‘Hx’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |         ^~
shim3d.c:3466:21: warning: unused variable ‘dQtz’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |                     ^~~~
shim3d.c:3466:15: warning: unused variable ‘dQty’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |               ^~~~
shim3d.c:3466:9: warning: unused variable ‘dQtx’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |         ^~~~
shim3d.c:3464:14: warning: unused variable ‘len’ [-Wunused-variable]
 3464 |     GLdouble len, R1x, R1y, R1z, R2x, R2y, R2z, MG[4][3],
      |              ^~~
shim3d.c:3463:26: warning: unused variable ‘offset’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                          ^~~~~~
shim3d.c:3463:23: warning: unused variable ‘m’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                       ^
shim3d.c:3463:20: warning: unused variable ‘k’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                    ^
shim3d.c:3463:17: warning: unused variable ‘j’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                 ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF odlbox.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from odlbox.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
odlbox.c: In function ‘LB_onVScroll’:
odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable]
  424 | Boolean    IsGoUp=FALSE;
      |            ^~~~~~
rm -f libvibrant.a
ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibrant.a ../lib
ranlib ../lib/libvibrant.a
mv vibbutns.o vibbutns.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibbutns.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibbutns.c: In function ‘Nlm_CheckCallback’:
vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  354 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_RadioCallback’:
vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  373 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_SetButtonStatus’:
vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  694 |   Nlm_Int2         val;
      |                    ^~~
vibbutns.c: In function ‘Nlm_NewButton.constprop’:
vibbutns.c:1159:3: warning: ‘call’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1159 |   XtAddCallback (c, call, Nlm_ButtonCallback, (XtPointer) b);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv vibbutns.o vibbutns.glo
mv vibbutns.tmp vibbutns.o
mv vibextra.o vibextra.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibextra.c:87:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibextra.c: In function ‘Nlm_RGB2HSL.constprop’:
vibextra.c:1219:13: warning: ‘min’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1219 |     i++; if ( i > 2 ) i=0;
      |             ^
mv vibextra.o vibextra.glo
mv vibextra.tmp vibextra.o
mv vibfiles.o vibfiles.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibfiles.c: In function ‘Nlm_WriteCard’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_WriteInt’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_CardToStr’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_IntToStr’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv vibfiles.o vibfiles.glo
mv vibfiles.tmp vibfiles.o
mv vibforms.o vibforms.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibforms.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibforms.o vibforms.glo
mv vibforms.tmp vibforms.o
mv vibgroup.o vibgroup.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibgroup.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibgroup.o vibgroup.glo
mv vibgroup.tmp vibgroup.o
mv viblists.o viblists.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from viblists.c:164:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
viblists.c: In function ‘Nlm_SetListPosition’:
viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable]
 1121 |   Nlm_Boolean is_realized;
      |               ^~~~~~~~~~~
mv viblists.o viblists.glo
mv viblists.tmp viblists.o
mv vibmenus.o vibmenus.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmenus.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmenus.c: In function ‘Nlm_IsMenuItemChecked’:
vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  563 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_CheckMenuItem’:
vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  591 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableMenuItem’:
vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2006 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2005 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoice’:
vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2072 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceGroup’:
vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2122 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceItem’:
vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2166 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2164 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableMenuItem’:
vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2329 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2328 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoice’:
vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2395 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoiceItem’:
vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2489 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2487 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_RemoveSubMenu’:
vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2627 |   Nlm_MenuTool     h;
      |                    ^
vibmenus.c: In function ‘Nlm_CountMenuItems’:
vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3056 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetMenuItem’:
vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3239 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetPopListTitle’:
vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
 3349 |   Nlm_MenU       m;
      |                  ^
vibmenus.c: In function ‘Nlm_AppendItems’:
vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable]
 3978 |   Nlm_Char      accel;
      |                 ^~~~~
vibmenus.c: In function ‘Nlm_NewPopupList’:
vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable]
 4969 |   Widget          lbl;
      |                   ^~~
vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable]
 4967 |   Pixel           color;
      |                   ^~~~~
mv vibmenus.o vibmenus.glo
mv vibmenus.tmp vibmenus.o
mv vibprmpt.o vibprmpt.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibprmpt.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibprmpt.o vibprmpt.glo
mv vibprmpt.tmp vibprmpt.o
mv vibsbars.o vibsbars.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibsbars.c:135:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibsbars.o vibsbars.glo
mv vibsbars.tmp vibsbars.o
mv vibslate.o vibslate.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibslate.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibslate.c: In function ‘Nlm_EnableSlate’:
vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1199 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_DisableSlate’:
vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1254 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_SelectSlate’:
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
 1515 |     XtVaGetValues (h, XmNbackground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
 1517 |     XtVaGetValues (h, XmNforeground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SelectPanel’:
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
 1544 |   XtVaGetValues (h, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
 1546 |   XtVaGetValues (h, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2026 |   Nlm_SlateTool    h;
      |                    ^
vibslate.c: In function ‘Nlm_SlateClickCallback’:
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
 2157 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
 2159 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateInputCallback’:
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
 2313 |       XtVaGetValues(w, XmNbackground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
 2315 |       XtVaGetValues(w, XmNforeground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
 2359 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
 2361 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_Set3DColorMap’:
vibslate.c:2686:17: warning: unused variable ‘testvisual’ [-Wunused-variable]
 2686 |         Boolean testvisual;
      |                 ^~~~~~~~~~
vibslate.c:2685:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 2685 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibslate.c: In function ‘Nlm_ResetPanel’:
vibslate.c:1390:5: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1390 |     rst ((Nlm_PaneL) p);
      |     ^~~~~~~~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_RemoveSlate’:
vibslate.c:1454:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1454 |       rst (p);
      |       ^~~~~~~
vibslate.c:1450:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1450 |       pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                             ^
vibslate.c:1449:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                       ^
vibslate.c:1449:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                 ^
vibslate.c:1449:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                           ^
vibslate.c:1449:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1449 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |      ^
vibslate.c: In function ‘Nlm_ResetSlate’:
vibslate.c:1354:7: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1354 |       rst (p);
      |       ^~~~~~~
vibslate.c:1347:29: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1347 |       pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                             ^
vibslate.c:1346:71: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                       ^
vibslate.c:1346:49: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                 ^
vibslate.c:1346:27: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                           ^
vibslate.c:1346:6: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1346 |   if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |      ^
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2215:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |          ^
vibslate.c:2202:20: note: ‘pdata.click’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                               ^
vibslate.c:2202:20: note: ‘pdata.drag’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                     ^
vibslate.c:2202:20: note: ‘pdata.hold’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2215:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                           ^
vibslate.c:2202:20: note: ‘pdata.release’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2223:11: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2223 |           drw (p);
      |           ^~~~~~~
vibslate.c:560:18: note: ‘pdata.draw’ was declared here
  560 |   Nlm_PanelData  pdata;
      |                  ^~~~~
vibslate.c:2216:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2216 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                                       ^
vibslate.c:2202:20: note: ‘pdata.reset’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c:2216:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2216 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                 ^
vibslate.c:2202:20: note: ‘pdata.draw’ was declared here
 2202 |   Nlm_PanelData    pdata;
      |                    ^~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2048:10: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |          ^
vibslate.c:2048:31: warning: ‘pdata.drag’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                               ^
vibslate.c:2048:53: warning: ‘pdata.hold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                     ^
vibslate.c:2048:75: warning: ‘pdata.release’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2048 |       if (pdata.click != NULL || pdata.drag != NULL || pdata.hold != NULL ||
      |                                                                           ^
vibslate.c:2053:12: warning: ‘pdata.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2053 |         if (clk != NULL && Nlm_GetEnabled ((Nlm_GraphiC) p)
      |            ^
vibslate.c:2049:33: warning: ‘pdata.draw’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2049 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                 ^
vibslate.c:2049:55: warning: ‘pdata.reset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2049 |           pdata.release != NULL || pdata.draw != NULL || pdata.reset != NULL) {
      |                                                       ^
mv vibslate.o vibslate.glo
mv vibslate.tmp vibslate.o
mv vibtexts.o vibtexts.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibtexts.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibtexts.c: In function ‘Nlm_TextCallback’:
vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable]
 2982 |   XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
      |                        ^~~
vibtexts.c: In function ‘Nlm_LoseFocusCallback’:
vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 2999 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
vibtexts.c: In function ‘Nlm_TabCallback’:
vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3109 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenReturnCallback’:
vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3122 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenActivateCallback’:
vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 3135 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
mv vibtexts.o vibtexts.glo
mv vibtexts.tmp vibtexts.o
mv vibutils.o vibutils.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from vibutils.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibutils.o vibutils.glo
mv vibutils.tmp vibutils.o
mv vibwndws.o vibwndws.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibwndws.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibwndws.c: In function ‘Nlm_SetColorMap’:
vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 1060 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibwndws.c: In function ‘Nlm_SetWindowTitle’:
vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1567 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_GetWindowTitle’:
vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1610 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_NewWindow’:
vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable]
 2155 |   int             screen_num;
      |                   ^~~~~~~~~~
vibwndws.c: In function ‘Nlm_HideWindow’:
vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2526 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowNormal’:
vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2969 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowModal’:
vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3014 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowDocument’:
vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3060 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_VibMainPrelude’:
vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable]
 6800 |   Nlm_Int2  retval;
      |             ^~~~~~
vibwndws.c: In function ‘Nlm_RemoveDyingWindows’:
vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 6922 |   Nlm_WindowTool   wptr;
      |                    ^~~~
At top level:
vibwndws.c:1318:16: warning: ‘Nlm_StandardColormap’ defined but not used [-Wunused-function]
 1318 | static Boolean Nlm_StandardColormap(Colormap *cMap,
      |                ^~~~~~~~~~~~~~~~~~~~
mv vibwndws.o vibwndws.glo
mv vibwndws.tmp vibwndws.o
mv vibmain.o vibmain.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmain.c:40:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  121 | main (int argc, char *argv[])
      | ^~~~
mv vibmain.o vibmain.glo
mv vibmain.tmp vibmain.o
mv ncbidraw.o ncbidraw.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidraw.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbidraw.c: In function ‘Nlm_SelectFont.part.0’:
ncbidraw.c:500:12: warning: ‘fdata.print’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  500 |     *fdata = *fp;
      |     ~~~~~~~^~~~~
ncbidraw.c:2875:17: note: ‘fdata.print’ was declared here
 2875 |   Nlm_FontData  fdata;
      |                 ^~~~~
ncbidraw.c:2900:9: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2900 |         XSetFont (Nlm_currentXDisplay, Nlm_currentXGC, fdata.handle->fid);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidraw.c: In function ‘Nlm_EraseRect.part.0’:
ncbidraw.c:4464:41: warning: ‘rtool.height’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4464 |                     rtool.width+1, rtool.height+1);
      |                                    ~~~~~^~~~~~~
ncbidraw.c:4464:26: warning: ‘rtool.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4464 |                     rtool.width+1, rtool.height+1);
      |                     ~~~~~^~~~~~
ncbidraw.c:4463:49: warning: ‘rtool.y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4463 |                     rtool.x - Nlm_XOffset, rtool.y - Nlm_YOffset,
      |                                            ~~~~~^~
ncbidraw.c:4463:26: warning: ‘rtool.x’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4463 |                     rtool.x - Nlm_XOffset, rtool.y - Nlm_YOffset,
      |                     ~~~~~^~
ncbidraw.c: In function ‘s_DoQuadrant’:
ncbidraw.c:5618:10: warning: ‘rr.right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5618 |   rx = rr.right  - rr.left;
      |        ~~^~~~~~
ncbidraw.c:5618:22: warning: ‘rr.left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5618 |   rx = rr.right  - rr.left;
      |                    ~~^~~~~
ncbidraw.c:5619:10: warning: ‘rr.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5619 |   ry = rr.bottom - rr.top;
      |        ~~^~~~~~~
ncbidraw.c:5619:22: warning: ‘rr.top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5619 |   ry = rr.bottom - rr.top;
      |                    ~~^~~~
ncbidraw.c: In function ‘Nlm_CleanUpDrawingTools’:
ncbidraw.c:7541:5: warning: ‘fdata.handle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7541 |     XFreeFont (Nlm_currentXDisplay, fdata.handle);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv ncbidraw.o ncbidraw.glo
mv ncbidraw.tmp ncbidraw.o
mv drawing.o drawing.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from drawing.c:128:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv drawing.o drawing.glo
mv drawing.tmp drawing.o
mv mapping.o mapping.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from mapping.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapping.c: In function ‘Nlm_MapRectToWorldBox’:
mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable]
  139 |   Int4 curScale;
      |        ^~~~~~~~
mv mapping.o mapping.glo
mv mapping.tmp mapping.o
mv picture.o picture.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from picture.c:100:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv picture.o picture.glo
mv picture.tmp picture.o
mv viewer.o viewer.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from viewer.c:120:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv viewer.o viewer.glo
mv viewer.tmp viewer.o
mv document.o document.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from document.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
document.c: In function ‘Nlm_PrintDocument’:
document.c:4419:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4419 |       system (cmmd);
      |       ^~~~~~~~~~~~~
document.c:4423:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4423 |       system (cmmd);
      |       ^~~~~~~~~~~~~
mv document.o document.glo
mv document.tmp document.o
mv table.o table.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from table.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
table.c: In function ‘TableClick’:
table.c:1017:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1017 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:1017:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1017 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
table.c:1021:13: warning: ‘colRec.click’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1021 |             actn ((TablE) t, row + 1, column + 1);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
table.c: In function ‘SetTableBlockHilight.part.0’:
table.c:843:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  843 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:843:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  843 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
table.c: In function ‘SetTableBlockGray.part.0’:
table.c:917:34: warning: ‘colRec.width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  917 |         r.right = r.left + colRec.width;
      |                            ~~~~~~^~~~~~
table.c:917:20: warning: ‘colRec.pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  917 |         r.right = r.left + colRec.width;
      |                   ~^~~~~
mv table.o table.glo
mv table.tmp table.o
mv palette.o palette.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from palette.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv palette.o palette.glo
mv palette.tmp palette.o
mv diagnost.o diagnost.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from diagnost.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv diagnost.o diagnost.glo
mv diagnost.tmp diagnost.o
mv image.o image.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from image.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
image.c: In function ‘ShiftXMask’:
image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
  840 |         if(!((mask >> hi + low) & (unsigned long)1)) break;
      |                       ~~~^~~~~
mv image.o image.glo
mv image.tmp image.o
mv pictur3d.o pictur3d.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/pictur3d.h:49,
                 from ../include/ppict3d.h:49,
                 from pictur3d.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pictur3d.c: In function ‘Nlm_DeleteFromSeg’:
pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  114 |     else seg->first = b->next;
      |     ^~~~
pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  115 |   if ( seg->last == b ) seg->last = bprev;
      |   ^~
mv pictur3d.o pictur3d.glo
mv pictur3d.tmp pictur3d.o
mv prim3d1.o prim3d1.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d1.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d1.o prim3d1.glo
mv prim3d1.tmp prim3d1.o
mv prim3d2.o prim3d2.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d2.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d2.o prim3d2.glo
mv prim3d2.tmp prim3d2.o
mv prim3d3.o prim3d3.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d3.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d3.o prim3d3.glo
mv prim3d3.tmp prim3d3.o
mv prim3d4.o prim3d4.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d4.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d4.o prim3d4.glo
mv prim3d4.tmp prim3d4.o
mv prim3d5.o prim3d5.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d5.c:66:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d5.o prim3d5.glo
mv prim3d5.tmp prim3d5.o
mv viewer3d.o viewer3d.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c
mv viewer3d.o viewer3d.glo
mv viewer3d.tmp viewer3d.o
mv vibmouse.o vibmouse.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibmouse.c:67:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibmouse.o vibmouse.glo
mv vibmouse.tmp vibmouse.o
mv netscape.o netscape.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from netscape.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netscape.c: In function ‘NS_Obtain_lock’:
netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable]
  236 |     Bool waited = False;
      |          ^~~~~~
mv netscape.o netscape.glo
mv netscape.tmp netscape.o
mv imagelst.o imagelst.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/imagelst.h:52,
                 from imagelst.c:61:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv imagelst.o imagelst.glo
mv imagelst.tmp imagelst.o
mv treeview.o treeview.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from treeview.c:91:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv treeview.o treeview.glo
mv treeview.tmp treeview.o
mv shim3d.o shim3d.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c
shim3d.c: In function ‘OGL_AddCylinder3D’:
shim3d.c:918:14: warning: unused variable ‘iCount’ [-Wunused-variable]
  918 |     Nlm_Int4 iCount;
      |              ^~~~~~
shim3d.c: In function ‘OGL_AddText3D’:
shim3d.c:1210:22: warning: unused variable ‘i’ [-Wunused-variable]
 1210 |     Nlm_Int4 Length, i;
      |                      ^
shim3d.c: In function ‘OGL_Zoom_DragMA’:
shim3d.c:1770:16: warning: unused variable ‘OGL_Data’ [-Wunused-variable]
 1770 |     TOGL_Data *OGL_Data = MAToOGL(ma);
      |                ^~~~~~~~
shim3d.c: In function ‘OGL_Hit’:
shim3d.c:2065:37: warning: left shift count >= width of type [-Wshift-count-overflow]
 2065 |                 ZMinName = ZMinName << (sizeof(GLuint) * 8);
      |                                     ^~
shim3d.c: In function ‘write_row_callback’:
shim3d.c:2923:48: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2923 |             (((float) row) / (-nRows)) * ((end - start) / 15)
      |                                           ~~~~~^~~~~~~~
shim3d.c:2923:48: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from shim3d.c:331:
In function ‘strncpy’,
    inlined from ‘Nlm_FindAvailableFonts’ at shim3d.c:2234:9:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
shim3d.c: In function ‘SetOGLFont’:
shim3d.c:2381:64: warning: ‘closest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2381 |             fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]);
      |                                                                ^
shim3d.c:2376:37: warning: ‘mindiff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2376 |                 if (ii == 0 || diff < mindiff) {
      |                                ~~~~~^~~~~~~~~
shim3d.c:2381:64: warning: ‘list’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2381 |             fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]);
      |                                                                ^
shim3d.c: In function ‘Nlm_AddHalfWorm3D’:
shim3d.c:3463:26: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                          ^~~~~~
mv shim3d.o shim3d.glo
mv shim3d.tmp shim3d.o
mv odlbox.o odlbox.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from odlbox.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
odlbox.c: In function ‘LB_onVScroll’:
odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable]
  424 | Boolean    IsGoUp=FALSE;
      |            ^~~~~~
mv odlbox.o odlbox.glo
mv odlbox.tmp odlbox.o
rm -f libvibrantOGL.a
ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibrantOGL.a ../lib
ranlib ../lib/libvibrantOGL.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accentr.c:297:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
accentr.c: In function ‘EntrezBiostrucGet’:
accentr.c:2113:17: warning: unused variable ‘retval’ [-Wunused-variable]
 2113 |     BiostrucPtr retval = NULL;
      |                 ^~~~~~
accentr.c: In function ‘EntrezGIForSeqIdFunc’:
accentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
accentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from ../include/accutils.h:119,
                 from accutils.c:149:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from ../include/accutils.h:119,
                 from accutils.c:149:
In function ‘strncpy’,
    inlined from ‘EntrezFieldToString’ at accutils.c:691:13:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbiacc.a
ar cru libncbiacc.a accentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiacc.a ../lib
ranlib ../lib/libncbiacc.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drawseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from drawseq.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
drawseq.c: In function ‘AddFlatNodeSymbol’:
drawseq.c:811:7: warning: unused variable ‘symbol_height’ [-Wunused-variable]
  811 |  Int4 symbol_height = 8;
      |       ^~~~~~~~~~~~~
drawseq.c: In function ‘AddAlignBlocks’:
drawseq.c:970:7: warning: variable ‘c_num’ set but not used [-Wunused-but-set-variable]
  970 |  Int2 c_num;
      |       ^~~~~
drawseq.c: In function ‘AddAlignFeature’:
drawseq.c:1369:8: warning: unused variable ‘ptype’ [-Wunused-variable]
 1369 |  Uint1 ptype = 0;
      |        ^~~~~
drawseq.c: In function ‘AddAlignmentMismatch’:
drawseq.c:1523:7: warning: variable ‘i_right’ set but not used [-Wunused-but-set-variable]
 1523 |  Int4 i_right;
      |       ^~~~~~~
drawseq.c: In function ‘DrawRestrictionMap’:
drawseq.c:1811:10: warning: unused variable ‘retval’ [-Wunused-variable]
 1811 |  Boolean retval = FALSE;
      |          ^~~~~~
drawseq.c:1802:15: warning: variable ‘center’ set but not used [-Wunused-but-set-variable]
 1802 |  Int4 x1, x2, center;
      |               ^~~~~~
drawseq.c: In function ‘DrawFeatures’:
drawseq.c:2563:7: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 2563 |  Int2 entityID;
      |       ^~~~~~~~
drawseq.c: In function ‘DrawOneSeqLoc’:
drawseq.c:3020:10: warning: variable ‘show_seq_label’ set but not used [-Wunused-but-set-variable]
 3020 |  Boolean show_seq_label = TRUE; /*show the label of a sequence*/
      |          ^~~~~~~~~~~~~~
drawseq.c:3009:10: warning: variable ‘ends’ set but not used [-Wunused-but-set-variable]
 3009 |  Boolean ends;
      |          ^~~~
drawseq.c: In function ‘Label_GData’:
drawseq.c:3439:10: warning: variable ‘success’ set but not used [-Wunused-but-set-variable]
 3439 |  Boolean success = FALSE;
      |          ^~~~~~~
drawseq.c: In function ‘DrawEquivAlign’:
drawseq.c:3594:8: warning: unused variable ‘my_gray_color’ [-Wunused-variable]
 3594 |  Uint1 my_gray_color[]={63, 63, 63};
      |        ^~~~~~~~~~~~~
drawseq.c: In function ‘load_align_label_rectangle’:
drawseq.c:4352:10: warning: variable ‘found_it’ set but not used [-Wunused-but-set-variable]
 4352 |  Boolean found_it;
      |          ^~~~~~~~
drawseq.c: In function ‘PicForAlignNode’:
drawseq.c:4558:18: warning: variable ‘min_scale’ set but not used [-Wunused-but-set-variable]
 4558 |  Int4 max_width, min_scale;
      |                  ^~~~~~~~~
At top level:
drawseq.c:3525:22: warning: ‘get_ith_arp’ defined but not used [-Wunused-function]
 3525 | static AlignRangePtr get_ith_arp(AlignRangePtr arp, Int2 i)
      |                      ^~~~~~~~~~~
drawseq.c:3511:18: warning: ‘get_map_pos’ defined but not used [-Wunused-function]
 3511 | static MapPosPtr get_map_pos(MapLayoutPtr mlp, SeqIdPtr sip)
      |                  ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotmatrx.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dotmatrx.h:47,
                 from dotmatrx.c:32:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fea2seg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from fea2seg.c:74:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fstyle.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from fstyle.c:55:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg1.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg2.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smdlg2.c: In function ‘Nlm_CreateDlgGroup’:
smdlg2.c:631:12: warning: variable ‘toAlign’ set but not used [-Wunused-but-set-variable]
  631 |   Handle   toAlign[3];
      |            ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg3.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smdlg3.c: In function ‘FeatureExtraDraw’:
smdlg3.c:508:17: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  508 |       p1.y = (y0+y1)/2; p2.y = y0;
      |              ~~~^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smtools.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smtools.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smtools.c: In function ‘Nlm_CtreateToolsSM’:
smtools.c:534:30: warning: ‘%s’ directive writing up to 227 bytes into a region of size 32 [-Wformat-overflow=]
  534 |     sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size );
      |                              ^~
smtools.c:534:29: note: directive argument in the range [-32768, 32767]
  534 |     sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size );
      |                             ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smtools.c:48:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 3 and 235 bytes into a destination of size 32
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF styleman.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from styleman.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF stylemui.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from stylemui.c:48:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF glbpic.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from glbpic.c:22:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
glbpic.c: In function ‘label_linear_mark’:
glbpic.c:1295:7: warning: unused variable ‘tick_len’ [-Wunused-variable]
 1295 |  Int4 tick_len = TICK_LEN;
      |       ^~~~~~~~
glbpic.c: In function ‘add_alignment_to_global’:
glbpic.c:1552:8: warning: variable ‘p_val’ set but not used [-Wunused-but-set-variable]
 1552 |  Uint1 p_val;
      |        ^~~~~
At top level:
glbpic.c:1748:16: warning: ‘get_print_score’ defined but not used [-Wunused-function]
 1748 | static Boolean get_print_score(FloatHi min_score, FloatHi max_score, CharPtr label, Uint1 status)
      |                ^~~~~~~~~~~~~~~
glbpic.c:584:19: warning: ‘extract_align_range’ defined but not used [-Wunused-function]
  584 | static ValNodePtr extract_align_range(ValNodePtr PNTR arp_list, Uint1 displayOrder)
      |                   ^~~~~~~~~~~~~~~~~~~
glbpic.c: In function ‘get_circle_label_align’:
glbpic.c:2349:9: warning: ‘align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2349 |  return align;
      |         ^~~~~
glbpic.c: In function ‘label_circle_mark.isra’:
glbpic.c:2474:26: warning: ‘first_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2474 |        if(ABS(first_left - left) < (t_width +3))
      |                          ^
glbpic.c:2473:24: warning: ‘first_top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2473 |       if(ABS(first_top - top )< (font_height+3))
      |                        ^
glbpic.c:2417:30: warning: ‘first_align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2417 |  Uint1 label_align, p_align, first_align;
      |                              ^~~~~~~~~~~
glbpic.c:2469:28: warning: ‘first_width’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2469 |     t_width = (first_width + width)/2;
      |               ~~~~~~~~~~~~~^~~~~~~~
glbpic.c:2417:21: warning: ‘p_align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2417 |  Uint1 label_align, p_align, first_align;
      |                     ^~~~~~~
In file included from ../include/glbpic.h:7,
                 from glbpic.c:23:
glbpic.c: In function ‘add_alignment_to_global’:
../include/picture.h:520:22: warning: ‘g_top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  520 | #define AddTextLabel Nlm_AddTextLabel
      |                      ^~~~~~~~~~~~~~~~
glbpic.c:1560:7: note: ‘g_top’ was declared here
 1560 |  Int4 g_top, g_bottom;
      |       ^~~~~
glbpic.c: In function ‘Draw_Global’:
glbpic.c:2177:12: warning: ‘seglen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2177 |     m_stop += seglen;
      |     ~~~~~~~^~~~~~~~~
glbpic.c:1943:8: note: ‘seglen’ was declared here
 1943 |   Int4 seglen;
      |        ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF layout.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/layout.h:3,
                 from layout.c:2:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
layout.c: In function ‘LayoutNodeFlat’:
layout.c:326:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
  326 |  ValNodePtr vnp, next, prev;
      |                        ^~~~
layout.c: In function ‘layout_uncompressed_group’:
layout.c:1244:20: warning: variable ‘group_stop’ set but not used [-Wunused-but-set-variable]
 1244 |  Int2 group_start, group_stop;
      |                    ^~~~~~~~~~
layout.c: In function ‘LayoutFeatNode’:
layout.c:1365:17: warning: variable ‘y_next’ set but not used [-Wunused-but-set-variable]
 1365 |  Int4 cur_line, y_next;
      |                 ^~~~~~
layout.c:1364:17: warning: variable ‘labelstyle’ set but not used [-Wunused-but-set-variable]
 1364 |  Int4 segstyle, labelstyle;
      |                 ^~~~~~~~~~
layout.c:1363:10: warning: variable ‘show_trunc’ set but not used [-Wunused-but-set-variable]
 1363 |  Boolean show_trunc = FALSE;
      |          ^~~~~~~~~~
layout.c:1350:10: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
 1350 |  Int2 i, k;
      |          ^
layout.c: In function ‘LayoutAlignNode’:
layout.c:2208:7: warning: unused variable ‘num’ [-Wunused-variable]
 2208 |  Int4 num = 0;
      |       ^~~
At top level:
layout.c:1779:16: warning: ‘modify_master_line’ defined but not used [-Wunused-function]
 1779 | static Boolean modify_master_line(ValNodePtr vnp, Int4Ptr m_left, Int4Ptr m_right, Int4 maxScale, Uint1 label_align)
      |                ^~~~~~~~~~~~~~~~~~
layout.c: In function ‘GroupFeatNode’:
layout.c:636:14: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  636 |   prev->next = new;
      |   ~~~~~~~~~~~^~~~~
layout.c:594:35: note: ‘prev’ was declared here
  594 |  ValNodePtr my_node = NULL, curr, prev, next;
      |                                   ^~~~
layout.c: In function ‘OrderCdsmRNA’:
layout.c:969:14: warning: ‘m_missed’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  969 |       else if(missed == m_missed && m_offset > offset)
      |              ^
layout.c:940:15: note: ‘m_missed’ was declared here
  940 |  Int2 missed, m_missed; /*number of exons missed at both end*/
      |               ^~~~~~~~
layout.c: In function ‘LayoutFeatNode’:
layout.c:1503:12: warning: ‘p_right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1503 |    p_right = MAX(right, p_right);
layout.c:1502:11: warning: ‘p_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1502 |    p_left = MIN(left, p_left);
layout.c:1504:14: warning: ‘height’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1504 |    maxHeight = MAX(height, maxHeight);
layout.c: In function ‘LayoutAlignNode’:
layout.c:2215:17: warning: ‘next_line’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |  Int4 cur_line, next_line;
      |                 ^~~~~~~~~
layout.c:2251:7: warning: ‘next’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2251 |   i = find_align_line_number(anp, vnp->next,
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2252 |    label_align, &next, &line_status_list, m_right, maxScale);
      |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF saldist.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/saldist.h:48,
                 from saldist.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
saldist.c: In function ‘AAcode’:
saldist.c:1003:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1003 |   if (car=='A') return(1);  if (car=='B') return(2);
      |   ^~
saldist.c:1003:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1003 |   if (car=='A') return(1);  if (car=='B') return(2);
      |                             ^~
saldist.c:1004:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1004 |   if (car=='C') return(3);  if (car=='D') return(4);
      |   ^~
saldist.c:1004:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1004 |   if (car=='C') return(3);  if (car=='D') return(4);
      |                             ^~
saldist.c:1005:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1005 |   if (car=='E') return(5);  if (car=='F') return(6);
      |   ^~
saldist.c:1005:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1005 |   if (car=='E') return(5);  if (car=='F') return(6);
      |                             ^~
saldist.c:1006:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1006 |   if (car=='G') return(7);  if (car=='H') return(8);
      |   ^~
saldist.c:1006:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1006 |   if (car=='G') return(7);  if (car=='H') return(8);
      |                             ^~
saldist.c:1007:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1007 |   if (car=='I') return(9);  if (car=='K') return(10);
      |   ^~
saldist.c:1007:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1007 |   if (car=='I') return(9);  if (car=='K') return(10);
      |                             ^~
saldist.c:1008:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1008 |   if (car=='L') return(11); if (car=='M') return(12);
      |   ^~
saldist.c:1008:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1008 |   if (car=='L') return(11); if (car=='M') return(12);
      |                             ^~
saldist.c:1009:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1009 |   if (car=='N') return(13); if (car=='P') return(14);
      |   ^~
saldist.c:1009:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1009 |   if (car=='N') return(13); if (car=='P') return(14);
      |                             ^~
saldist.c:1010:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1010 |   if (car=='Q') return(15); if (car=='R') return(16);
      |   ^~
saldist.c:1010:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1010 |   if (car=='Q') return(15); if (car=='R') return(16);
      |                             ^~
saldist.c:1011:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1011 |   if (car=='S') return(17); if (car=='T') return(18);
      |   ^~
saldist.c:1011:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1011 |   if (car=='S') return(17); if (car=='T') return(18);
      |                             ^~
saldist.c:1012:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1012 |   if (car=='V') return(19); if (car=='W') return(20);
      |   ^~
saldist.c:1012:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1012 |   if (car=='V') return(19); if (car=='W') return(20);
      |                             ^~
saldist.c:1013:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1013 |   if (car=='X') return(21); if (car=='Y') return(22);
      |   ^~
saldist.c:1013:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1013 |   if (car=='X') return(21); if (car=='Y') return(22);
      |                             ^~
saldist.c:1014:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1014 |   if (car=='Z') return(23); if (car=='U') return(24);
      |   ^~
saldist.c:1014:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1014 |   if (car=='Z') return(23); if (car=='U') return(24);
      |                             ^~
saldist.c: In function ‘copy_string’:
saldist.c:1289:12: warning: value computed is not used [-Wunused-value]
 1289 |            *from++;
      |            ^~~~~~~
saldist.c:1302:11: warning: value computed is not used [-Wunused-value]
 1302 |           *from++;
      |           ^~~~~~~
saldist.c: In function ‘nss_ref_complength’:
saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1479 |              if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                 ^
saldist.c:1455:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1455 |            c1, c2;
      |                ^~
saldist.c:1455:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1455 |            c1, c2;
      |            ^~
saldist.c: In function ‘nss_pw_complength’:
saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1572 |               if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                  ^
saldist.c:1547:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1547 |            c1, c2;
      |                ^~
saldist.c:1547:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1547 |            c1, c2;
      |            ^~
saldist.c: In function ‘nss_gp_complength’:
saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1675 |                  if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                     ^
saldist.c:1640:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1640 |            c1, c2;
      |                ^~
saldist.c:1640:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1640 |            c1, c2;
      |            ^~
saldist.c: In function ‘SortbySimProc’:
saldist.c:2139:31: warning: variable ‘newsalpd’ set but not used [-Wunused-but-set-variable]
 2139 |   SeqAlignPtr        newsalp, newsalpd;
      |                               ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from saldist.c:49:
saldist.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
saldist.c:1853:22: warning: ‘scangp_calcul’ defined but not used [-Wunused-function]
 1853 | static Int4Ptr PNTR  scangp_calcul (EditAlignDataPtr adp, Int2 seq1, Int2 seq2, Int4 from, Int4 to, Int2 group, Int2 choice, Int2 win_width)
      |                      ^~~~~~~~~~~~~
saldist.c:1080:24: warning: ‘FloatLomatrix’ defined but not used [-Wunused-function]
 1080 | static FloatLoPtr PNTR FloatLomatrix (Int2 nrows, Int2 ncol)
      |                        ^~~~~~~~~~~~~
saldist.c:999:13: warning: ‘AAcode’ defined but not used [-Wunused-function]
  999 | static Int2 AAcode(Char car)
      |             ^~~~~~
saldist.c:928:16: warning: ‘new_matrice’ defined but not used [-Wunused-function]
  928 | static Boolean new_matrice (Int2 simmatrix, CharPtr path)
      |                ^~~~~~~~~~~
saldist.c:910:14: warning: ‘matrixlst’ defined but not used [-Wunused-variable]
  910 | static Char *matrixlst [] = {"", "idmat",
      |              ^~~~~~~~~
saldist.c: In function ‘writematrixhalf.constprop’:
saldist.c:1225:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1225 |               vnp=vnp->next;
      |               ~~~^~~~~~~~~~
saldist.c: In function ‘PwDistProc’:
saldist.c:1151:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1151 |               vnp=vnp->next;
      |               ~~~^~~~~~~~~~
saldist.c:1104:19: note: ‘vnp’ was declared here
 1104 |   ValNodePtr      vnp,
      |                   ^~~
saldist.c: In function ‘SortbyLenItem’:
saldist.c:2191:14: warning: ‘mink’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2191 |      sortlst [mink] = j + 1;
      |              ^
saldist.c:2172:28: note: ‘mink’ was declared here
 2172 |   Int2               j, k, mink;
      |                            ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF saled.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from saled.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
saled.c: In function ‘ReadAlignmentForSeqEntry’:
saled.c:3310:21: warning: unused variable ‘dirty’ [-Wunused-variable]
 3310 |                     dirty = FALSE;
      |                     ^~~~~
saled.c:3306:21: warning: unused variable ‘salp’ [-Wunused-variable]
 3306 |   SeqAlignPtr       salp=NULL,
      |                     ^~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from saled.c:49:
saled.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from saled.c:55:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salfiles.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from ../include/salfiles.h:48,
                 from salfiles.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salfiles.c: In function ‘NewFastaRead’:
salfiles.c:315:30: warning: variable ‘lastsegsip’ set but not used [-Wunused-but-set-variable]
  315 |   SeqIdPtr      segsip=NULL, lastsegsip=NULL;
      |                              ^~~~~~~~~~
salfiles.c: In function ‘ReadAlignmentToStrings’:
salfiles.c:664:16: warning: unused variable ‘nseq’ [-Wunused-variable]
  664 |   Int2         nseq = 0;
      |                ^~~~
salfiles.c: In function ‘MacawRead’:
salfiles.c:1257:15: warning: unused variable ‘vnp’ [-Wunused-variable]
 1257 |               vnp = NULL;
      |               ^~~
salfiles.c: In function ‘ReadLocalAlign’:
salfiles.c:1444:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1444 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1444:22: note: did you mean to dereference the pointer?
 1444 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1446:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1446 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1446:19: note: did you mean to dereference the pointer?
 1446 |               if (tmp!='\0')
      |                   ^
salfiles.c:1455:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1455 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1455:22: note: did you mean to dereference the pointer?
 1455 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1457:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1457 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1457:19: note: did you mean to dereference the pointer?
 1457 |               if (tmp!='\0')
      |                   ^
salfiles.c:1536:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1536 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1536:22: note: did you mean to dereference the pointer?
 1536 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1538:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1538 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1538:19: note: did you mean to dereference the pointer?
 1538 |               if (tmp!='\0')
      |                   ^
salfiles.c:1547:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1547 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1547:22: note: did you mean to dereference the pointer?
 1547 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1549:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1549 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1549:19: note: did you mean to dereference the pointer?
 1549 |               if (tmp!='\0')
      |                   ^
salfiles.c:1370:14: warning: variable ‘tmp1’ set but not used [-Wunused-but-set-variable]
 1370 |              tmp1;
      |              ^~~~
salfiles.c: In function ‘ImportFromFile’:
salfiles.c:2072:20: warning: unused variable ‘sep’ [-Wunused-variable]
 2072 |   SeqEntryPtr      sep = NULL;
      |                    ^~~
salfiles.c:2071:20: warning: unused variable ‘sap’ [-Wunused-variable]
 2071 |   SeqAnnotPtr      sap = NULL;
      |                    ^~~
salfiles.c: In function ‘FindSeqEntryForSeqIdCallback’:
salfiles.c:2672:12: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2672 |            if (SeqIdForSameBioseq(cip->sip, sip))
      |            ^~
salfiles.c:2674:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2674 |               cip->bsp = bsp;
      |               ^~~
salfiles.c: In function ‘sesp_to_pept’:
salfiles.c:2713:18: warning: unused variable ‘bufferPtr’ [-Wunused-variable]
 2713 |                  bufferPtr = NULL;
      |                  ^~~~~~~~~
salfiles.c: In function ‘SaveFeatProc’:
salfiles.c:3387:22: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 3387 |   Int2               handled;
      |                      ^~~~~~~
salfiles.c: In function ‘CCReadAnythingLoop’:
salfiles.c:3685:16: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 3685 |   Uint2        entityID;
      |                ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salfiles.c:48:
salfiles.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salfiles.c:501:19: warning: ‘get_lens_fromseqalign’ defined but not used [-Wunused-function]
  501 | static ValNodePtr get_lens_fromseqalign (SeqAlignPtr salp)
      |                   ^~~~~~~~~~~~~~~~~~~~~
salfiles.c: In function ‘NewFastaRead.constprop’:
salfiles.c:460:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  460 |   if (sip!=NULL)
      |      ^
salfiles.c: In function ‘GapFastaRead’:
salfiles.c:747:25: warning: ‘seqstr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  747 |                  seqstr [lgseq] = strp[j];
      |                         ^
salfiles.c:654:16: note: ‘seqstr’ was declared here
  654 |                seqstr;
      |                ^~~~~~
salfiles.c:724:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  724 |            if (!startp) {
      |               ^
salfiles.c:660:16: note: ‘startp’ was declared here
  660 |   Boolean      startp;
      |                ^~~~~~
salfiles.c: In function ‘CCDownloadProc’:
salfiles.c:2218:9: warning: ‘new_sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2218 |   vnp = SeqEntryToSeqLoc (sep, &n, adp->mol_type);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salfiles.c:2286:15: note: ‘new_sep’ was declared here
 2286 |   SeqEntryPtr new_sep;
      |               ^~~~~~~
salfiles.c: In function ‘ReadLocalAlignment’:
salfiles.c:1287:3: warning: ‘seqvnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1287 |   ValNodeFree (seqvnp);
      |   ^~~~~~~~~~~~~~~~~~~~
salfiles.c:1113:19: note: ‘seqvnp’ was declared here
 1113 |   ValNodePtr vnp, seqvnp;
      |                   ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpanel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from salpanel.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpanel.c: In function ‘go_to_next_to_draw’:
salpanel.c:331:17: warning: statement with no effect [-Wunused-value]
  331 |                 offsettmp;
      |                 ^~~~~~~~~
salpanel.c: In function ‘next_to_draw’:
salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  471 |                 if ( curstr != NULL )
      |                    ^
salpanel.c: In function ‘AssociatePropagatedSubloc’:
salpanel.c:3131:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 3131 |   ValNodePtr   vnp;
      |                ^~~
salpanel.c: In function ‘FeaturePropagateForm’:
salpanel.c:4674:15: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable]
 4674 |   PrompT      ppt;
      |               ^~~
salpanel.c:4669:15: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 4669 |   ButtoN      b;
      |               ^
salpanel.c: In function ‘OkToContinueWithFeatureApply’:
salpanel.c:6103:14: warning: unused variable ‘num_missing’ [-Wunused-variable]
 6103 |   Int4       num_missing = 0, seq_num, start_num;
      |              ^~~~~~~~~~~
salpanel.c: In function ‘DoApplyFeatureToAlignment’:
salpanel.c:6219:31: warning: unused variable ‘found_null’ [-Wunused-variable]
 6219 |   Boolean                     found_null = FALSE;
      |                               ^~~~~~~~~~
salpanel.c: In function ‘ApplyFeatureToAlignment’:
salpanel.c:6421:31: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 6421 |   ButtoN                      b;
      |                               ^
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salpanel.c:45:
salpanel.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salpanel.c:52:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salpanel.c:5059:13: warning: ‘BatchApplyFeatureDetailsMessage’ defined but not used [-Wunused-function]
 5059 | static void BatchApplyFeatureDetailsMessage (DialoG d, Int2 mssg)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salpanel.c:224:13: warning: ‘get_client_rectxy’ defined but not used [-Wunused-function]
  224 | static void get_client_rectxy (PaneL p, RectPtr prc, Int2 x, Int2 y)
      |             ^~~~~~~~~~~~~~~~~
salpanel.c:113:14: warning: ‘leftOvalFillSym’ defined but not used [-Wunused-variable]
  113 | static Uint1 leftOvalFillSym [] = {
      |              ^~~~~~~~~~~~~~~
salpanel.c:110:14: warning: ‘rightOvalFillSym’ defined but not used [-Wunused-variable]
  110 | static Uint1 rightOvalFillSym [] = {
      |              ^~~~~~~~~~~~~~~~
salpanel.c:107:14: warning: ‘leftOvalSym’ defined but not used [-Wunused-variable]
  107 | static Uint1 leftOvalSym [] = {
      |              ^~~~~~~~~~~
salpanel.c:104:14: warning: ‘rightOvalSym’ defined but not used [-Wunused-variable]
  104 | static Uint1 rightOvalSym [] = {
      |              ^~~~~~~~~~~~
salpanel.c:101:14: warning: ‘downTriFillSym’ defined but not used [-Wunused-variable]
  101 | static Uint1 downTriFillSym [] = {
      |              ^~~~~~~~~~~~~~
salpanel.c:98:14: warning: ‘upTriFillSym’ defined but not used [-Wunused-variable]
   98 | static Uint1 upTriFillSym [] = {
      |              ^~~~~~~~~~~~
salpanel.c:89:14: warning: ‘ovalFillSym’ defined but not used [-Wunused-variable]
   89 | static Uint1 ovalFillSym [] = {
      |              ^~~~~~~~~~~
salpanel.c:86:14: warning: ‘diamondFillSym’ defined but not used [-Wunused-variable]
   86 | static Uint1 diamondFillSym [] = {
      |              ^~~~~~~~~~~~~~
salpanel.c:80:14: warning: ‘downTriSym’ defined but not used [-Wunused-variable]
   80 | static Uint1 downTriSym [] = {
      |              ^~~~~~~~~~
salpanel.c:77:14: warning: ‘upTriSym’ defined but not used [-Wunused-variable]
   77 | static Uint1 upTriSym [] = {
      |              ^~~~~~~~
salpanel.c:68:14: warning: ‘ovalSym’ defined but not used [-Wunused-variable]
   68 | static Uint1 ovalSym [] = {
      |              ^~~~~~~
salpanel.c:65:14: warning: ‘diamondSym’ defined but not used [-Wunused-variable]
   65 | static Uint1 diamondSym [] = {
      |              ^~~~~~~~~~
salpanel.c: In function ‘draw_feat.isra’:
salpanel.c:1939:17: warning: ‘col1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1939 |   Int4          col1;
      |                 ^~~~
salpanel.c: In function ‘on_draw’:
salpanel.c:2527:23: warning: ‘draw_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2527 |                       draw_seq (adp, curssp, from_inseq, drw_width, ptlh, curstr, draw_diff, masterstr, TRUE, itemsubtype, FALSE);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salparam.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salparam.c: In function ‘mergelst’:
salparam.c:1325:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
 1325 |   Boolean          val;
      |                    ^~~
salparam.c: In function ‘unmergelst’:
salparam.c:1340:20: warning: variable ‘dbdp’ set but not used [-Wunused-but-set-variable]
 1340 |   DialogBoxDataPtr dbdp;
      |                    ^~~~
salparam.c: In function ‘FormulaDialog’:
salparam.c:1398:36: warning: variable ‘b5’ set but not used [-Wunused-but-set-variable]
 1398 |   ButtoN           b1, b2, b3, b4, b5;
      |                                    ^~
salparam.c: In function ‘JK_NTPattern2Ex’:
salparam.c:1596:19: warning: variable ‘debug_str’ set but not used [-Wunused-but-set-variable]
 1596 |   CharPtr         debug_str;
      |                   ^~~~~~~~~
salparam.c: In function ‘DotPlotBtn’:
salparam.c:1936:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1936 |   Int2               status;
      |                      ^~~~~~
salparam.c: In function ‘DotPlotDialog’:
salparam.c:1973:20: warning: variable ‘bt1’ set but not used [-Wunused-but-set-variable]
 1973 |   ButtoN           bt1, bt2;
      |                    ^~~
salparam.c: In function ‘DotPlotItem’:
salparam.c:2004:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 2004 |   Int2               status;
      |                      ^~~~~~
salparam.c: In function ‘SelectSeqFunc’:
salparam.c:2308:20: warning: variable ‘str’ set but not used [-Wunused-but-set-variable]
 2308 |   CharPtr          str;
      |                    ^~~
salparam.c: In function ‘HighlightSelectionFunc’:
salparam.c:2344:22: warning: variable ‘wdp’ set but not used [-Wunused-but-set-variable]
 2344 |   SeqEditViewFormPtr wdp;
      |                      ^~~
salparam.c: In function ‘PropagateFeatureProc’:
salparam.c:2623:25: warning: variable ‘iID’ set but not used [-Wunused-but-set-variable]
 2623 |   Uint2            eID, iID,
      |                         ^~~
salparam.c:2614:20: warning: variable ‘salp’ set but not used [-Wunused-but-set-variable]
 2614 |   SeqAlignPtr      salp;
      |                    ^~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salparam.c:49:
salparam.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from salparam.c:58:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salparam.c: In function ‘FileInProc’:
salparam.c:782:10: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  782 |          fscanf(fp, "%d %ld", &n, &lens);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘DotPlotBtn’:
salparam.c:1951:13: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1951 |         bsp = (BioseqPtr) sep->data.ptrvalue;
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘PropagateFeatDialog’:
salparam.c:2964:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=]
 2964 |         sprintf (str2, " (%ld..%ld)", (long)start, (long)stop);
      |                                ^~~
salparam.c:2964:24: note: directive argument in the range [-2147483647, 2147483647]
 2964 |         sprintf (str2, " (%ld..%ld)", (long)start, (long)stop);
      |                        ^~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 28 bytes into a destination of size 24
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c:2962:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=]
 2962 |         sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop);
      |                                ^~~
salparam.c:2962:24: note: directive argument in the range [-2147483647, 2147483647]
 2962 |         sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 21 and 41 bytes into a destination of size 24
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salsa.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salsa.c: In function ‘SelectSubsProc’:
salsa.c:2140:23: warning: variable ‘svpp’ set but not used [-Wunused-but-set-variable]
 2140 |   SeqEditViewProcsPtr svpp=NULL;
      |                       ^~~~
salsa.c: In function ‘SetSeqInfo’:
salsa.c:3195:17: warning: unused variable ‘vnp’ [-Wunused-variable]
 3195 |   ValNodePtr    vnp = NULL;
      |                 ^~~
salsa.c: In function ‘SetupAlignDataSap’:
salsa.c:3410:16: warning: variable ‘entityID_sap’ set but not used [-Wunused-but-set-variable]
 3410 |   Uint2        entityID_sap;
      |                ^~~~~~~~~~~~
salsa.c: In function ‘get_bestpos_formerge’:
salsa.c:4304:17: warning: variable ‘insert_after’ set but not used [-Wunused-but-set-variable]
 4304 |                 insert_after=FALSE;
      |                 ^~~~~~~~~~~~
salsa.c:4303:17: warning: variable ‘insert_before’ set but not used [-Wunused-but-set-variable]
 4303 |   Boolean       insert_before=FALSE,
      |                 ^~~~~~~~~~~~~
salsa.c: In function ‘CreateSeqAlignViewForm’:
salsa.c:4689:22: warning: variable ‘mergebtn’ set but not used [-Wunused-but-set-variable]
 4689 |   ButtoN             mergebtn;
      |                      ^~~~~~~~
salsa.c: In function ‘AlgEditFunc’:
salsa.c:4976:23: warning: unused variable ‘wdp’ [-Wunused-variable]
 4976 |   SeqEditViewFormPtr  wdp = NULL;
      |                       ^~~
salsa.c:4974:23: warning: unused variable ‘w’ [-Wunused-variable]
 4974 |   WindoW              w = NULL;
      |                       ^
salsa.c: In function ‘OldAlignmentEditor’:
salsa.c:5106:16: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
 5106 |   Int2         rval;
      |                ^~~~
salsa.c: In function ‘LaunchAnnotAlignEditor’:
salsa.c:5293:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5293 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignEditor’:
salsa.c:5310:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5310 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignViewer’:
salsa.c:5327:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5327 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignEditorFromDesktop’:
salsa.c:5342:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 5342 |   OMProcControlPtr ompcp;
      |                    ^~~~~
salsa.c: In function ‘LaunchAlignEditorFromDesktop2’:
salsa.c:5359:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 5359 |   OMProcControlPtr ompcp;
      |                    ^~~~~
salsa.c: In function ‘InsertSeqProc’:
salsa.c:5538:17: warning: variable ‘cnclbt’ set but not used [-Wunused-but-set-variable]
 5538 |   ButtoN insbt, cnclbt;
      |                 ^~~~~~
salsa.c:5536:10: warning: variable ‘insprt’ set but not used [-Wunused-but-set-variable]
 5536 |   PrompT insprt;
      |          ^~~~~~
salsa.c: In function ‘SeqAlignBestHit’:
salsa.c:5605:22: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
 5605 |    Int4              last;
      |                      ^~~~
salsa.c: In function ‘SeqAlignStartUpdate’:
salsa.c:5791:22: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
 5791 |   Int2        index, k, j;
      |                      ^
salsa.c:5790:15: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5790 |               start;
      |               ^~~~~
salsa.c:5789:15: warning: variable ‘len_sum’ set but not used [-Wunused-but-set-variable]
 5789 |   Int4        len_sum,
      |               ^~~~~~~
salsa.c:5786:15: warning: variable ‘lenp’ set but not used [-Wunused-but-set-variable]
 5786 |   Int4Ptr     lenp,
      |               ^~~~
salsa.c:5785:15: warning: variable ‘pre’ set but not used [-Wunused-but-set-variable]
 5785 |   SeqIdPtr    pre, sip, next;
      |               ^~~
salsa.c: In function ‘CCNormalizeSeqAlignId’:
salsa.c:6746:23: warning: unused variable ‘gi’ [-Wunused-variable]
 6746 |   Int4                gi = 0;
      |                       ^~
salsa.c:6745:17: warning: unused variable ‘missing_fmt’ [-Wunused-variable]
 6745 |   CharPtr       missing_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\n";
      |                 ^~~~~~~~~~~
salsa.c:6744:17: warning: unused variable ‘missing_cont_fmt’ [-Wunused-variable]
 6744 |   CharPtr       missing_cont_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\nContinue anyway?\n";
      |                 ^~~~~~~~~~~~~~~~
salsa.c: In function ‘ValidateSeqAlignandACCEx’:
salsa.c:7106:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable]
 7106 |   MsgAnswer    ans;
      |                ^~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salsa.c:48:
salsa.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salsa.c:68:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salsa.c:87:13: warning: ‘InsertSequenceDlg’ declared ‘static’ but never defined [-Wunused-function]
   87 | static void InsertSequenceDlg (ButtoN b);
      |             ^~~~~~~~~~~~~~~~~
salsa.c:5973:13: warning: ‘SWPrintFarpointerAln’ defined but not used [-Wunused-function]
 5973 | static void SWPrintFarpointerAln(SeqAlignPtr sap, FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~
salsa.c:2360:13: warning: ‘MakeCdRgnrProc’ defined but not used [-Wunused-function]
 2360 | static void MakeCdRgnrProc (IteM i) {
      |             ^~~~~~~~~~~~~~
salsa.c:2356:13: warning: ‘MakeCdRgnProc’ defined but not used [-Wunused-function]
 2356 | static void MakeCdRgnProc (IteM i) {
      |             ^~~~~~~~~~~~~
salsa.c:1760:13: warning: ‘AcceptCloseWindowButton’ defined but not used [-Wunused-function]
 1760 | static void AcceptCloseWindowButton (ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
In file included from salsa.c:52:
../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable]
   50 | static CharPtr GBFeat[number_GBFeat] = {
      |                ^~~~~~
In file included from ../include/ncbi.h:65,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
salsa.c: In function ‘ExportFASTAForUnselectedUpdates’:
../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  113 | #define FileClose Nlm_FileClose
      |                   ^~~~~~~~~~~~~
salsa.c:6350:23: note: ‘fp’ was declared here
 6350 |   FILE               *fp;
      |                       ^~
In file included from ../include/ncbi.h:65,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
salsa.c: In function ‘ExportBadAlignments’:
../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  113 | #define FileClose Nlm_FileClose
      |                   ^~~~~~~~~~~~~
salsa.c:6318:23: note: ‘fp’ was declared here
 6318 |   FILE               *fp;
      |                       ^~
salsa.c: In function ‘SeqAlignBestHit.constprop’:
salsa.c:5746:23: warning: ‘nctr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5746 |          *nonly = nctr+beg+end;
      |                   ~~~~^~~~
salsa.c:5748:24: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5748 |          *nonly = -(beg+end);
      |                    ~~~~^~~~~
salsa.c:5746:23: warning: ‘beg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5746 |          *nonly = nctr+beg+end;
      |                   ~~~~^~~~
salsa.c: In function ‘SkipThisWindowProc’:
salsa.c:4574:22: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4574 |   SeqAlignPtr        salp;
      |                      ^~~~
salsa.c: In function ‘DeleteProc’:
salsa.c:1955:165: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1955 |               if ((adp->sap1_original && (FindSeqIdinSeqAlign ((SeqAlignPtr)adp->sap1_original->data, SeqLocId(slp))) > 0) || (FindSeqIdinSeqAlign ((SeqAlignPtr)sap->data, SeqLocId(slp))) > 0)
      |                                                                                                                                                                  ~~~^~~~~~
salsa.c: In function ‘BioseqEditMsgFunc’:
salsa.c:912:51: warning: ‘anp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  912 |         ssp = SelStructNew (anp->seq_entityID, anp->bsp_itemID, OBJ_BIOSEQ, from, to, anp->sip, Seq_strand_plus, FALSE);
      |                                                ~~~^~~~~~~~~~~~
salsa.c:890:20: note: ‘anp’ was declared here
  890 |   AlignNodePtr     anp;
      |                    ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqfltr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqfltr.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqfltr.c: In function ‘FilterSeq’:
seqfltr.c:259:21: warning: ‘fptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  259 |         sgp->values = (Pointer) fptr;
      |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqgraph.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqgraph.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqgraph.c: In function ‘EndPointDialogToEndPointValNode’:
seqgraph.c:140:10: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 |   return (Pointer) eplist;
      |          ^~~~~~~~~~~~~~~~
seqgraph.c: In function ‘SeqLocGraphViewProc’:
seqgraph.c:1136:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1136 |   while (eplist != NULL)
      |         ^
seqgraph.c: In function ‘MarkPrims’:
seqgraph.c:911:11: warning: ‘fval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  911 |       val = fval/2;
      |       ~~~~^~~~~~~~
seqgraph.c: In function ‘CutOffProc’:
seqgraph.c:1018:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1018 |   while (eplist != NULL)
      |         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqgrphx.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqgrphx.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqgrphx.c:301:13: warning: ‘CleanupGCFilterForm’ defined but not used [-Wunused-function]
  301 | static void CleanupGCFilterForm  (GraphiC g, VoidPtr data)
      |             ^~~~~~~~~~~~~~~~~~~
seqgrphx.c:152:25: warning: ‘FilterMsgFunc’ defined but not used [-Wunused-function]
  152 | static Int2 LIBCALLBACK FilterMsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~~~
seqgrphx.c:28:25: warning: ‘MatrixMsgFunc’ defined but not used [-Wunused-function]
   28 | static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqmtrx.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqmtrx.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqmtrx.c:387:20: warning: ‘MatrixSearch’ defined but not used [-Wunused-function]
  387 | static SeqGraphPtr MatrixSearch (BioseqPtr bsp, Int2 matrixtype)
      |                    ^~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqpcc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqpcc.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqpcc.c: In function ‘PCCProc’:
seqpcc.c:229:14: warning: ‘pbsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  229 |   if ((spp = SeqPortNew (pbsp, start, end, 0, Seq_code_iupacaa)) != NULL)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqanal.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqanal.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aacomp.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from aacomp.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
aacomp.c:86:20: warning: ‘AACGraph’ defined but not used [-Wunused-function]
   86 | static SeqGraphPtr AACGraph (SeqPortPtr spp, Int4 start, Int4 end, Int4 window,
      |                    ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqscrl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from ../include/seqscrl.h:4,
                 from seqscrl.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valdlg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vibforms.h:46,
                 from valdlg.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valdlg.c: In function ‘ClickRulesDoc’:
valdlg.c:373:22: warning: unused variable ‘scroll_pos’ [-Wunused-variable]
  373 |   Int2               scroll_pos = 0;
      |                      ^~~~~~~~~~
valdlg.c:372:22: warning: unused variable ‘sb_vert’ [-Wunused-variable]
  372 |   BaR                sb_vert = NULL;
      |                      ^~~~~~~
valdlg.c: In function ‘UpdateRuleList’:
valdlg.c:479:26: warning: unused variable ‘last_cr’ [-Wunused-variable]
  479 |   CommentRulePtr new_cr, last_cr = NULL;
      |                          ^~~~~~~
valdlg.c: In function ‘SaveRuleChanges’:
valdlg.c:540:23: warning: variable ‘dlg’ set but not used [-Wunused-but-set-variable]
  540 |   CommentSetDlgPtr    dlg;
      |                       ^~~
valdlg.c: In function ‘LaunchCommentRulesEditor’:
valdlg.c:553:23: warning: unused variable ‘m’ [-Wunused-variable]
  553 |   MenU                m;
      |                       ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsm.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vsmpriv.h:48,
                 from vsm.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsm.c: In function ‘VSMDrawAbout’:
vsm.c:1436:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1436 |     if (vsmp->title != NULL)
      |     ^~
vsm.c:1438:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1438 |  if (vsmp->aboutinfo != NULL)
      |  ^~
vsm.c: In function ‘VSMAboutProc’:
vsm.c:1466:8: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 1466 |  PaneL p;
      |        ^
vsm.c: In function ‘VSeqMgrCreateMainWindow’:
vsm.c:1569:12: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable]
 1569 |  ObjMgrPtr omp;
      |            ^~~
vsm.c: In function ‘VSeqMgrPopulateMain’:
vsm.c:1710:13: warning: variable ‘atp’ set but not used [-Wunused-but-set-variable]
 1710 |  AsnTypePtr atp;
      |             ^~~
vsm.c: In function ‘VSMGatherPictProc’:
vsm.c:2193:15: warning: variable ‘bssp’ set but not used [-Wunused-but-set-variable]
 2193 |  BioseqSetPtr bssp;
      |               ^~~~
vsm.c:2188:30: warning: variable ‘bottom’ set but not used [-Wunused-but-set-variable]
 2188 |  Int4 top, lineheight, left, bottom, width, maxwidth;
      |                              ^~~~~~
vsm.c: In function ‘VSMAddPictureToEntity’:
vsm.c:2821:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable]
 2821 |  Pointer ptr;
      |          ^~~
vsm.c:2820:13: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2820 |  ValNodePtr vnp;
      |             ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsmfile.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vsmpriv.h:48,
                 from vsmfile.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsmfile.c: In function ‘VSMGenericBinAsnOpen’:
vsmfile.c:259:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  259 |     ButtoN b;
      |            ^
vsmfile.c: In function ‘VSMGenericFastaSave’:
vsmfile.c:395:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable]
  395 |     Uint1 code;
      |           ^~~~
vsmfile.c: In function ‘VSMFastaProtSaveWithProduct’:
vsmfile.c:527:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable]
  527 |     Uint1 code;
      |           ^~~~
vsmfile.c: In function ‘VSMSaveSetsAsFiles’:
vsmfile.c:1368:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 1368 |   OMProcControlPtr ompcp;
      |                    ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsmutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vsmutil.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsmutil.c: In function ‘GetDocPosForError’:
vsmutil.c:1743:18: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
 1743 |   Int2           val;
      |                  ^~~
At top level:
vsmutil.c:1628:16: warning: ‘MakeFieldReports’ defined but not used [-Wunused-function]
 1628 | static Boolean MakeFieldReports (ValNodePtr report_list, ValNodePtr field_list, FILE *fp)
      |                ^~~~~~~~~~~~~~~~
vsmutil.c:387:20: warning: ‘GetSeqDescGivenIDs’ defined but not used [-Wunused-function]
  387 | static SeqDescrPtr GetSeqDescGivenIDs (Uint2 entityID, Uint4 itemID, Uint2 itemtype)
      |                    ^~~~~~~~~~~~~~~~~~
vsmutil.c: In function ‘ContinueProc’:
vsmutil.c:2256:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2256 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2255:5: note: within this loop
 2255 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘RevalidateProc’:
vsmutil.c:2223:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2223 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2222:5: note: within this loop
 2222 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘SetVerbosityAndRepopulate’:
vsmutil.c:2297:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2297 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2296:5: note: within this loop
 2296 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘ClearValidateWindow’:
vsmutil.c:613:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
  613 |         vep->counts [sev] = 0;
      |         ~~~~~~~~~~~~~~~~~~^~~
vsmutil.c:612:7: note: within this loop
  612 |       for (sev = SEV_NONE; sev <= SEV_MAX; sev++) {
      |       ^~~
vsmutil.c: In function ‘CreateValidateWindowExExEx’:
vsmutil.c:2620:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2620 |           vep->counts [i] = 0;
      |           ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2619:9: note: within this loop
 2619 |         for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |         ^~~
vsmutil.c: In function ‘ContinueProc’:
vsmutil.c:2256:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2256 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
vsmutil.c: In function ‘RevalidateProc’:
vsmutil.c:2223:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2223 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
vsmutil.c: In function ‘SetVerbosityAndRepopulate’:
vsmutil.c:2297:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2297 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
vsmutil.c: In function ‘ClearValidateWindow’:
vsmutil.c:613:21: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
  613 |         vep->counts [sev] = 0;
      |         ~~~~~~~~~~~~^~~~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
vsmutil.c: In function ‘CreateValidateWindowExExEx’:
vsmutil.c:2620:23: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2620 |           vep->counts [i] = 0;
      |           ~~~~~~~~~~~~^~~
vsmutil.c:107:18: note: while referencing ‘counts’
  107 |   Int4           counts [6];
      |                  ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvgraph.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvgraph.c:177:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvgraph.c: In function ‘UDV_click_item’:
udvgraph.c:877:9: warning: unused variable ‘IsTransNeeded’ [-Wunused-variable]
  877 | Boolean IsTransNeeded=FALSE;
      |         ^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_SendBSPSelectMsg’:
udvgraph.c:1230:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
 1230 | Boolean     bDeselectAll=TRUE;
      |             ^~~~~~~~~~~~
udvgraph.c:1226:30: warning: variable ‘bsp_coord_old’ set but not used [-Wunused-but-set-variable]
 1226 | Int4        first_bsp_coord, bsp_coord_old,old_pos;
      |                              ^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_draw_helixDNA’:
udvgraph.c:1827:15: warning: variable ‘cyChar_2’ set but not used [-Wunused-but-set-variable]
 1827 | Int2 cxChar_2,cyChar_2;
      |               ^~~~~~~~
udvgraph.c: In function ‘draw_logo’:
udvgraph.c:1940:38: warning: variable ‘cyGlobal’ set but not used [-Wunused-but-set-variable]
 1940 | Int2 pos,cxChar=7,cyChar=13,cxGlobal,cyGlobal;
      |                                      ^~~~~~~~
udvgraph.c: In function ‘UDV_draw_CDS_minus’:
udvgraph.c:2337:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
 2337 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
udvgraph.c:2332:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable]
 2332 |     numivals2=0,
      |     ^~~~~~~~~
udvgraph.c: In function ‘UDV_draw_CDS_plus’:
udvgraph.c:2461:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
 2461 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_draw_panel’:
udvgraph.c:4111:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4111 |         if(vdp->vgp->MasterViewer == SAMVIEWDDV)
      |         ^~
udvgraph.c:4113:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4113 |             Row = ViewMgr_GetRow(svpp, vdp->userkey);
      |             ^~~
udvgraph.c:4041:21: warning: unused variable ‘vnp_seqinfo’ [-Wunused-variable]
 4041 | ValNodePtr          vnp_seqinfo=NULL;
      |                     ^~~~~~~~~~~
udvgraph.c:4035:45: warning: variable ‘nLinesDraw’ set but not used [-Wunused-but-set-variable]
 4035 | Int4     decal_haut,from_row,to_row,nTotRow,nLinesDraw;
      |                                             ^~~~~~~~~~
udvgraph.c:4035:37: warning: variable ‘nTotRow’ set but not used [-Wunused-but-set-variable]
 4035 | Int4     decal_haut,from_row,to_row,nTotRow,nLinesDraw;
      |                                     ^~~~~~~
At top level:
udvgraph.c:3921:14: warning: ‘UDV_calc_decalRC’ defined but not used [-Wunused-function]
 3921 | static Int4  UDV_calc_decalRC(ValNodePtr ParaG,Int4 ScrollPos,
      |              ^~~~~~~~~~~~~~~~
udvgraph.c:3433:14: warning: ‘UDV_Draw_features_label’ defined but not used [-Wunused-function]
 3433 | static void  UDV_Draw_features_label(UnDViewerGraphDataPtr GrData,
      |              ^~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:1298:13: warning: ‘UDV_AutoSelectAllSeq’ defined but not used [-Wunused-function]
 1298 | static void UDV_AutoSelectAllSeq(ViewerDialogDataPtr vdp,Boolean bSelect)
      |             ^~~~~~~~~~~~~~~~~~~~
udvgraph.c:971:14: warning: ‘UDV_draw_horz_cursor’ defined but not used [-Wunused-function]
  971 | static void  UDV_draw_horz_cursor(UnDViewerGraphDataPtr GrData,
      |              ^~~~~~~~~~~~~~~~~~~~
udvgraph.c:948:13: warning: ‘UDV_draw_vert_cursor’ defined but not used [-Wunused-function]
  948 | static void UDV_draw_vert_cursor(RecT rcClip,PoinT pos)
      |             ^~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from udvgraph.c:180:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
udvgraph.c: In function ‘UDV_GetCurrentDispRange’:
udvgraph.c:638:15: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  638 |  *from_bsp=pgp->StartLetter;
      |            ~~~^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_Draw_features’:
udvgraph.c:3203:58: warning: ‘idx6’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3203 |     UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
      |                                                   ~~~~~~~^~~~~~
udvgraph.c:3203:38: warning: ‘idx5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3203 |     UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
      |                              ~~~~~~~~^~~~~~
udvgraph.c:3196:47: warning: ‘idx4’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3196 |     stop2=_min_(pgp->StopLetter,context->ivals[idx4]);
      |                                               ^
udvgraph.c:3189:58: warning: ‘idx3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3189 |     UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
      |                                                   ~~~~~~~^~~~~~
udvgraph.c:3189:38: warning: ‘idx2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3189 |     UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
      |                              ~~~~~~~~^~~~~~
udvgraph.c:3182:49: warning: ‘idx1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3182 |     start2=_max_(pgp->StartLetter,context->ivals[idx1]);
      |                                                 ^
In file included from ../include/udviewer.h:225,
                 from udvgraph.c:177:
../include/udvdef.h:187:40: warning: ‘stop_x2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  187 | #define _max_(a,b)        ((a)>=(b)?(a):(b))
      |                                        ^
udvgraph.c:2803:21: note: ‘stop_x2’ was declared here
 2803 | Int2 start_x,stop_x,stop_x2,  /*id. but in pixels*/
      |                     ^~~~~~~
udvgraph.c: In function ‘UDV_ClickProc’:
udvgraph.c:1461:8: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1461 |        UDV_SelectFeatInFeatDlg(vmp,entityID,itemID);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvopen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvopen.c:101:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvopen.c: In function ‘UDV_FileOpen’:
udvopen.c:875:16: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
  875 | ButtoN    b,b1,b2;
      |                ^~
udvopen.c:875:11: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  875 | ButtoN    b,b1,b2;
      |           ^
udvopen.c: In function ‘UDV_CreateListBioseqDlg’:
udvopen.c:1180:9: warning: the address of ‘szName’ will always evaluate as ‘true’ [-Waddress]
 1180 |     if (szName){
      |         ^~~~~~
udvopen.c: In function ‘UDV_FOpenCancelProc’:
udvopen.c:792:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  792 |     UDV_set_PullMenus(&vmp->MainMenu,TRUE);
      |                       ^~~~~~~~~~~~~~
udvopen.c: In function ‘UDV_analyze_SEP_for_open’:
udvopen.c:325:15: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  325 |  vmp->entityID=entityID;
      |  ~~~~~~~~~~~~~^~~~~~~~~
udvopen.c:327:14: warning: ‘dataptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  327 |  vmp->dataptr=dataptr;
      |  ~~~~~~~~~~~~^~~~~~~~
udvopen.c: In function ‘UDV_FOpenAcceptProc’:
udvopen.c:855:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  855 |     UDV_set_PullMenus(&vmp->MainMenu,TRUE);
      |                       ^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvpanel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvpanel.c:197:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvpanel.c: In function ‘UDV_GotoBtnProc’:
udvpanel.c:2080:22: warning: variable ‘old_ivalue’ set but not used [-Wunused-but-set-variable]
 2080 | Int4          iValue,old_ivalue,line_num,from_bsp,to_bsp,
      |                      ^~~~~~~~~~
udvpanel.c:2079:15: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2079 | ValNodePtr    vnp;
      |               ^~~
udvpanel.c: In function ‘CreateMainControls’:
udvpanel.c:2165:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable]
 2165 | Int2   cxChar,cyChar,Margins;
      |        ^~~~~~
udvpanel.c: In function ‘UDV_SearchFeatForKey’:
udvpanel.c:3478:14: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3478 | ButtoN    b1,b2;
      |              ^~
At top level:
udvpanel.c:2773:28: warning: ‘FeaturesListBoxScan’ defined but not used [-Wunused-function]
 2773 | static Boolean LIBCALLBACK FeaturesListBoxScan (SeqFeatPtr sfp,
      |                            ^~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/udviewer.h:220,
                 from udvpanel.c:197:
udvpanel.c: In function ‘InitFeaturesListDlg’:
../include/vibdefns.h:342:19: warning: ‘pop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  342 | #define PopupItem Nlm_PopupItem
      |                   ^~~~~~~~~~~~~
udvpanel.c:3194:7: note: ‘pop’ was declared here
 3194 | PopuP pop;
      |       ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotvibrant.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/dotviewer.h:15,
                 from dotvibrant.c:84:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dotvibrant.c: In function ‘DOT_DisplayHits’:
dotvibrant.c:564:18: warning: variable ‘ycomp’ set but not used [-Wunused-but-set-variable]
  564 |   Int4           ycomp, xcomp;
      |                  ^~~~~
dotvibrant.c: In function ‘DOT_VscrlProc’:
dotvibrant.c:918:16: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable]
  918 |   Int2         visLines, vmargin, hmargin;
      |                ^~~~~~~~
dotvibrant.c: In function ‘DOT_HscrlProc’:
dotvibrant.c:972:20: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable]
  972 |   Int2         dx, visLines, offset, hmargin, vmargin;
      |                    ^~~~~~~~
dotvibrant.c: In function ‘DOT_VCrossHairs’:
dotvibrant.c:1402:10: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1402 |   Int4   cursor_size =15;
      |          ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_HCrossHairs’:
dotvibrant.c:1427:9: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1427 |   Int4  cursor_size = 15;
      |         ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_MoveCrossHairs’:
dotvibrant.c:1453:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 1453 |   DOTSelDataPtr  data;
      |                  ^~~~
dotvibrant.c:1452:10: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1452 |   Int4   cursor_size = 15;
      |          ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_DrawXAxis’:
dotvibrant.c:1532:38: warning: unused variable ‘title’ [-Wunused-variable]
 1532 |   Char         scale_buf[15] = {""}, title[50]={""}; /*scale value*/
      |                                      ^~~~~
dotvibrant.c: In function ‘DOT_DrawYAxis’:
dotvibrant.c:1642:38: warning: unused variable ‘title’ [-Wunused-variable]
 1642 |   Char         scale_buf[15] = {""}, title[50]={""}; /*scale value*/
      |                                      ^~~~~
dotvibrant.c:1641:55: warning: variable ‘Fh_4’ set but not used [-Wunused-but-set-variable]
 1641 |   Int4         pos, ylen, x, y, scale_pos, i, j, Fh_2,Fh_4;
      |                                                       ^~~~
dotvibrant.c: In function ‘DOT_SVDisplayDiags’:
dotvibrant.c:1770:28: warning: variable ‘aln_diag’ set but not used [-Wunused-but-set-variable]
 1770 |   Int4               diag, aln_diag;
      |                            ^~~~~~~~
dotvibrant.c:1770:22: warning: variable ‘diag’ set but not used [-Wunused-but-set-variable]
 1770 |   Int4               diag, aln_diag;
      |                      ^~~~
dotvibrant.c:1766:22: warning: variable ‘width’ set but not used [-Wunused-but-set-variable]
 1766 |   Int4               width, height;
      |                      ^~~~~
dotvibrant.c:1765:31: warning: variable ‘p_HFrom’ set but not used [-Wunused-but-set-variable]
 1765 |   Int4               p_VFrom, p_HFrom;
      |                               ^~~~~~~
dotvibrant.c:1765:22: warning: variable ‘p_VFrom’ set but not used [-Wunused-but-set-variable]
 1765 |   Int4               p_VFrom, p_HFrom;
      |                      ^~~~~~~
dotvibrant.c:1762:28: warning: unused variable ‘cutoff’ [-Wunused-variable]
 1762 |   Int4               stop, cutoff=0, q_start, s_start, length;
      |                            ^~~~~~
dotvibrant.c:1760:34: warning: variable ‘seg3’ set but not used [-Wunused-but-set-variable]
 1760 |   SegmenT            seg1, seg2, seg3, seg4;
      |                                  ^~~~
dotvibrant.c: In function ‘DOT_FillNewSeqBufs’:
dotvibrant.c:2197:19: warning: unused variable ‘alp’ [-Wunused-variable]
 2197 |   DOTAlignInfoPtr alp=NULL;
      |                   ^~~
dotvibrant.c: In function ‘DOT_InitCInfo’:
dotvibrant.c:2258:14: warning: unused variable ‘colBuf’ [-Wunused-variable]
 2258 |   Char       colBuf[12]={""};
      |              ^~~~~~
dotvibrant.c: In function ‘DOT_SVDisplaySequence’:
dotvibrant.c:2379:16: warning: variable ‘matrix’ set but not used [-Wunused-but-set-variable]
 2379 |   Int4Ptr PNTR matrix;
      |                ^~~~~~
dotvibrant.c:2367:14: warning: variable ‘vis_2’ set but not used [-Wunused-but-set-variable]
 2367 |   Int4       vis_2, buf_len;
      |              ^~~~~
dotvibrant.c:2364:14: warning: unused variable ‘prot_threshold’ [-Wunused-variable]
 2364 |   Int4       prot_threshold=0, bloc_cntr;
      |              ^~~~~~~~~~~~~~
dotvibrant.c:2350:24: warning: variable ‘mip2’ set but not used [-Wunused-but-set-variable]
 2350 |   DOTMainDataPtr mip1, mip2;
      |                        ^~~~
dotvibrant.c: In function ‘DOT_SVClickProc’:
dotvibrant.c:2807:17: warning: unused variable ‘handled’ [-Wunused-variable]
 2807 |   Int2          handled=0;
      |                 ^~~~~~~
dotvibrant.c: In function ‘DOT_ResizeFeatWindow’:
dotvibrant.c:3016:63: warning: variable ‘SubjectHeight’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                                               ^~~~~~~~~~~~~
dotvibrant.c:3016:51: warning: variable ‘QueryHeight’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                                   ^~~~~~~~~~~
dotvibrant.c:3016:37: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                     ^~~
dotvibrant.c: In function ‘DOT_ResizeSequenceWindow’:
dotvibrant.c:3098:25: warning: variable ‘is_visible2’ set but not used [-Wunused-but-set-variable]
 3098 |   Boolean  is_visible1, is_visible2;
      |                         ^~~~~~~~~~~
dotvibrant.c:3098:12: warning: variable ‘is_visible1’ set but not used [-Wunused-but-set-variable]
 3098 |   Boolean  is_visible1, is_visible2;
      |            ^~~~~~~~~~~
dotvibrant.c:3095:51: warning: variable ‘V1Height’ set but not used [-Wunused-but-set-variable]
 3095 |   Int2     height,width,gap,vsbWidth,in,hsbHeight,V1Height,V2Height, goHeight;
      |                                                   ^~~~~~~~
dotvibrant.c: In function ‘DOT_HideFeatDlg’:
dotvibrant.c:3745:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 3745 |     ButtoN b;
      |            ^
dotvibrant.c: In function ‘DOT_SVBuildDiagViewer’:
dotvibrant.c:4031:18: warning: variable ‘mip’ set but not used [-Wunused-but-set-variable]
 4031 |   DOTMainDataPtr mip;
      |                  ^~~
dotvibrant.c:4029:28: warning: unused variable ‘str2’ [-Wunused-variable]
 4029 |   Char      str1[41]={""}, str2[41]={""};
      |                            ^~~~
dotvibrant.c:4029:13: warning: unused variable ‘str1’ [-Wunused-variable]
 4029 |   Char      str1[41]={""}, str2[41]={""};
      |             ^~~~
dotvibrant.c:4022:18: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable]
 4022 |   PrompT    pr1, pr2;
      |                  ^~~
dotvibrant.c:4022:13: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable]
 4022 |   PrompT    pr1, pr2;
      |             ^~~
dotvibrant.c: In function ‘DOT_UpdateDataRects’:
dotvibrant.c:4166:19: warning: variable ‘dy’ set but not used [-Wunused-but-set-variable]
 4166 |   Int4  comp, dx, dy, xstart, ystart;
      |                   ^~
dotvibrant.c:4166:15: warning: variable ‘dx’ set but not used [-Wunused-but-set-variable]
 4166 |   Int4  comp, dx, dy, xstart, ystart;
      |               ^~
dotvibrant.c: In function ‘DOT_MsgFunc’:
dotvibrant.c:4215:17: warning: variable ‘vdp2’ set but not used [-Wunused-but-set-variable]
 4215 |   DOTVibDataPtr vdp2 = NULL;
      |                 ^~~~
dotvibrant.c: In function ‘DOT_ReleaseProc’:
dotvibrant.c:4373:32: warning: unused variable ‘yaxis_incr’ [-Wunused-variable]
 4373 |   Boolean     xaxis_incr=TRUE, yaxis_incr=TRUE;
      |                                ^~~~~~~~~~
dotvibrant.c:4373:15: warning: unused variable ‘xaxis_incr’ [-Wunused-variable]
 4373 |   Boolean     xaxis_incr=TRUE, yaxis_incr=TRUE;
      |               ^~~~~~~~~~
dotvibrant.c:4371:19: warning: variable ‘alp’ set but not used [-Wunused-but-set-variable]
 4371 |   DOTAlignInfoPtr alp=NULL;
      |                   ^~~
dotvibrant.c:4370:18: warning: variable ‘mip1’ set but not used [-Wunused-but-set-variable]
 4370 |   DOTMainDataPtr mip1=NULL;
      |                  ^~~~
dotvibrant.c: In function ‘DOT_StartDOTPLOT’:
dotvibrant.c:4891:23: warning: variable ‘vdp’ set but not used [-Wunused-but-set-variable]
 4891 |   DOTVibDataPtr       vdp;
      |                       ^~~
dotvibrant.c: In function ‘DOT_DoZoom’:
dotvibrant.c:5106:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 5106 |   DOTSelDataPtr  data;
      |                  ^~~~
dotvibrant.c: In function ‘DOT_ZoomProc’:
dotvibrant.c:5204:23: warning: variable ‘temport’ set but not used [-Wunused-but-set-variable]
 5204 |   WindoW              temport, w;
      |                       ^~~~~~~
dotvibrant.c: In function ‘AlnMgr2GetNextLine’:
dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value]
 5315 |   *n++;
      |   ^~~~
dotvibrant.c: In function ‘DOT_GetAlign’:
dotvibrant.c:5332:44: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
 5332 |   Int4         x1, y1, x2, y2, numlines=0, n=0, i=0;
      |                                            ^
dotvibrant.c: In function ‘DOT_FillAlignInfoPointer’:
dotvibrant.c:5565:16: warning: unused variable ‘i’ [-Wunused-variable]
 5565 |   Int4         i=0, n=0;
      |                ^
dotvibrant.c: In function ‘DOT_Prob_FillAlignInfoPointer’:
dotvibrant.c:5681:16: warning: unused variable ‘i’ [-Wunused-variable]
 5681 |   Int4         i=0, n=0;
      |                ^
dotvibrant.c:5680:16: warning: unused variable ‘numsaps’ [-Wunused-variable]
 5680 |   Int4         numsaps = 0, numlines = 0;
      |                ^~~~~~~
dotvibrant.c:5678:37: warning: unused variable ‘sap_tmp’ [-Wunused-variable]
 5678 |   SeqAlignPtr  sap=NULL, salp=NULL, sap_tmp=NULL;
      |                                     ^~~~~~~
dotvibrant.c: In function ‘DOT_DoBlast’:
dotvibrant.c:5918:23: warning: unused variable ‘eval’ [-Wunused-variable]
 5918 |   Char                eval[11]={""};
      |                       ^~~~
dotvibrant.c:5917:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable]
 5917 |   Boolean             is_local;
      |                       ^~~~~~~~
dotvibrant.c:5915:23: warning: unused variable ‘entityID’ [-Wunused-variable]
 5915 |   Uint2               entityID=0;
      |                       ^~~~~~~~
dotvibrant.c: In function ‘DOT_CreateWindowDetails’:
dotvibrant.c:6214:27: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable]
 6214 |   PrompT             pr1, pr2;
      |                           ^~~
dotvibrant.c:6214:22: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable]
 6214 |   PrompT             pr1, pr2;
      |                      ^~~
dotvibrant.c:6207:21: warning: variable ‘g1’ set but not used [-Wunused-but-set-variable]
 6207 |   GrouP          g, g1, g2;
      |                     ^~
dotvibrant.c: In function ‘DOT_ResizeMainWindow’:
dotvibrant.c:6273:35: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
 6273 |   Int2        height, width, in , gap;
      |                                   ^~~
dotvibrant.c: In function ‘DOT_FindAlignment’:
dotvibrant.c:6662:29: warning: unused variable ‘rb_fixed’ [-Wunused-variable]
 6662 |   Boolean   lt_fixed=FALSE, rb_fixed=FALSE;
      |                             ^~~~~~~~
dotvibrant.c:6662:13: warning: unused variable ‘lt_fixed’ [-Wunused-variable]
 6662 |   Boolean   lt_fixed=FALSE, rb_fixed=FALSE;
      |             ^~~~~~~~
dotvibrant.c:6661:17: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 6661 |   DOTSelDataPtr data;
      |                 ^~~~
dotvibrant.c: In function ‘SCP_CompareOrderOrganizeBioseqs’:
dotvibrant.c:6792:25: warning: variable ‘itemID’ set but not used [-Wunused-but-set-variable]
 6792 |    Uint4                itemID=0;
      |                         ^~~~~~
dotvibrant.c: In function ‘SCP_OrganizeAlnsInSet’:
dotvibrant.c:6873:21: warning: variable ‘indextype’ set but not used [-Wunused-but-set-variable]
 6873 |    Int4             indextype;
      |                     ^~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from ../include/dotviewer.h:32,
                 from dotvibrant.c:84:
dotvibrant.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/dotviewer.h:32,
                 from dotvibrant.c:84:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dotvibrant.c:6642:16: warning: ‘DOT_DeselectPrim’ defined but not used [-Wunused-function]
 6642 | static Boolean DOT_DeselectPrim (SegmenT seg, PrimitivE prim, Uint2 segID,Uint2 primID, Uint2 primCt, VoidPtr userdata)
      |                ^~~~~~~~~~~~~~~~
dotvibrant.c:6346:13: warning: ‘DOT_NewAnalysis’ defined but not used [-Wunused-function]
 6346 | static void DOT_NewAnalysis (ButtoN b)
      |             ^~~~~~~~~~~~~~~
dotvibrant.c:5894:16: warning: ‘DOT_get_eval’ defined but not used [-Wunused-function]
 5894 | static FloatHi DOT_get_eval(Int4 exp)
      |                ^~~~~~~~~~~~
dotvibrant.c:5325:16: warning: ‘DOT_GetAlign’ defined but not used [-Wunused-function]
 5325 | static Boolean DOT_GetAlign (DOTAlignInfoPtr alp)
      |                ^~~~~~~~~~~~
dotvibrant.c:5281:16: warning: ‘AlnMgr2GetNextLine’ defined but not used [-Wunused-function]
 5281 | static Boolean AlnMgr2GetNextLine(SeqAlignPtr sap, AlnMsg2Ptr amp1, AlnMsg2Ptr amp2, Int4Ptr x1, Int4Ptr y1, Int4Ptr x2, Int4Ptr y2, Int4Ptr n)
      |                ^~~~~~~~~~~~~~~~~~
dotvibrant.c:4767:13: warning: ‘DOT_FeatAnalysisProc’ defined but not used [-Wunused-function]
 4767 | static void DOT_FeatAnalysisProc(ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~
dotvibrant.c:4749:13: warning: ‘DOT_GetInfoProc’ defined but not used [-Wunused-function]
 4749 | static void DOT_GetInfoProc (IteM i)
      |             ^~~~~~~~~~~~~~~
dotvibrant.c:4213:25: warning: ‘DOT_MsgFunc’ defined but not used [-Wunused-function]
 4213 | static Int2 LIBCALLBACK DOT_MsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~
dotvibrant.c:3688:13: warning: ‘DOT_HideAcceptProc’ defined but not used [-Wunused-function]
 3688 | static void DOT_HideAcceptProc(ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~
dotvibrant.c:3318:13: warning: ‘DOT_AddFeatureToSegment’ defined but not used [-Wunused-function]
 3318 | static void DOT_AddFeatureToSegment(SeqMgrFeatContextPtr context,
      |             ^~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2954:13: warning: ‘DOT_SVChangeLabels’ defined but not used [-Wunused-function]
 2954 | static void DOT_SVChangeLabels (GrouP g)
      |             ^~~~~~~~~~~~~~~~~~
dotvibrant.c:2760:16: warning: ‘DOT_SVGetDiag’ defined but not used [-Wunused-function]
 2760 | static Boolean DOT_SVGetDiag (Uint2 segID, Uint2 primID, VoidPtr userdata)
      |                ^~~~~~~~~~~~~
dotvibrant.c: In function ‘DOT_GetNthSeqFromAlign’:
dotvibrant.c:5087:3: warning: ‘spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5087 |   SeqPortFree(spp);
      |   ^~~~~~~~~~~~~~~~
dotvibrant.c: In function ‘DOT_SVPopulateSequenceViewer.part.0’:
dotvibrant.c:2611:19: warning: ‘strand2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2380:23: note: ‘strand2’ was declared here
 2380 |   Uint1      strand1, strand2;
      |                       ^~~~~~~
dotvibrant.c:2611:19: warning: ‘strand1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2380:14: note: ‘strand1’ was declared here
 2380 |   Uint1      strand1, strand2;
      |              ^~~~~~~
dotvibrant.c:2561:45: warning: ‘residue_names’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2561 |                       sBuf[c]=*residue_names[(int)*s];
      |                                             ^
dotvibrant.c:2378:16: note: ‘residue_names’ was declared here
 2378 |   CharPtr PNTR residue_names;
      |                ^~~~~~~~~~~~~
dotvibrant.c:2611:19: warning: ‘s_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:42: note: ‘s_pos’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                                          ^~~~~
dotvibrant.c:2611:19: warning: ‘q_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:35: note: ‘q_pos’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                                   ^~~~~
dotvibrant.c:2504:21: warning: ‘hit_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2504 |   hit_stop+=hit_stop/10;
      |             ~~~~~~~~^~~
dotvibrant.c:2370:25: note: ‘hit_stop’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                         ^~~~~~~~
dotvibrant.c:2572:27: warning: ‘hit_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2572 |                           DOT_HlSeq(sbSeg, rc, margin, i+1, bloc_size, hit_start, hit_stop, Fh,chw_2);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:14: note: ‘hit_start’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |              ^~~~~~~~~
dotvibrant.c:2503:16: warning: ‘buf_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2503 |   end=s+buf_len-1;
      |                ^
dotvibrant.c:2367:21: note: ‘buf_len’ was declared here
 2367 |   Int4       vis_2, buf_len;
      |                     ^~~~~~~
dotvibrant.c:2545:18: warning: ‘is_na’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2545 |               if (is_na)
      |                  ^
dotvibrant.c:2361:27: note: ‘is_na’ was declared here
 2361 |   Boolean    ambig=FALSE, is_na;
      |                           ^~~~~
dotvibrant.c:2503:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2503 |   end=s+buf_len-1;
      |   ~~~^~~~~~~~~~~~
dotvibrant.c:2357:14: note: ‘s’ was declared here
 2357 |   Uint1Ptr   s;
      |              ^
dotvibrant.c:2626:16: warning: ‘q’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2626 |               q++;
      |               ~^~
dotvibrant.c:2356:14: note: ‘q’ was declared here
 2356 |   Uint1Ptr   q;
      |              ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dlgutil1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil1.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dlgutil1.c: In function ‘IsAuthList’:
dlgutil1.c:2962:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 2962 |   Int4 len;
      |        ^~~
dlgutil1.c: In function ‘TestIntervalEditor’:
dlgutil1.c:5324:20: warning: variable ‘fuzz_to’ set but not used [-Wunused-but-set-variable]
 5324 |   Int2             fuzz_to;
      |                    ^~~~~~~
dlgutil1.c:5323:20: warning: variable ‘fuzz_from’ set but not used [-Wunused-but-set-variable]
 5323 |   Int2             fuzz_from;
      |                    ^~~~~~~~~
dlgutil1.c:5322:41: warning: variable ‘fuzz_before’ set but not used [-Wunused-but-set-variable]
 5322 |   Boolean          isInterval, isPoint, fuzz_before, fuzz_after;
      |                                         ^~~~~~~~~~~
dlgutil1.c: In function ‘DbtagDialogToDbtagPtr’:
dlgutil1.c:7254:16: warning: unused variable ‘val’ [-Wunused-variable]
 7254 |   long int     val;
      |                ^~~
dlgutil1.c:7250:16: warning: unused variable ‘ptr’ [-Wunused-variable]
 7250 |   CharPtr      ptr;
      |                ^~~
dlgutil1.c:7247:16: warning: unused variable ‘num_digits’ [-Wunused-variable]
 7247 |   Int2         num_digits;
      |                ^~~~~~~~~~
dlgutil1.c:7246:16: warning: unused variable ‘notallzero’ [-Wunused-variable]
 7246 |   Boolean      notallzero;
      |                ^~~~~~~~~~
dlgutil1.c:7243:16: warning: unused variable ‘leadingzero’ [-Wunused-variable]
 7243 |   Boolean      leadingzero;
      |                ^~~~~~~~~~~
dlgutil1.c:7238:16: warning: unused variable ‘alldigits’ [-Wunused-variable]
 7238 |   Boolean      alldigits;
      |                ^~~~~~~~~
dlgutil1.c: In function ‘CreateStandardEditMenu’:
dlgutil1.c:9427:8: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
 9427 |   IteM i;
      |        ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from dlgutil1.c:55:
dlgutil1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dlgutil1.c:8603:25: warning: ‘GetNthNameValuePair’ defined but not used [-Wunused-function]
 8603 | static NameValuePairPtr GetNthNameValuePair (Int4 n, ValNodePtr list)
      |                         ^~~~~~~~~~~~~~~~~~~
dlgutil1.c:8051:16: warning: ‘ParseSpecimenVoucherOk’ defined but not used [-Wunused-function]
 8051 | static Boolean ParseSpecimenVoucherOk (CharPtr str)
      |                ^~~~~~~~~~~~~~~~~~~~~~
dlgutil1.c:1293:13: warning: ‘GbqualsToVisStringDialog’ defined but not used [-Wunused-function]
 1293 | static void GbqualsToVisStringDialog (SeqFeatPtr sfp, DialoG d, CharPtr qual)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dlgutil2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil2.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dlgutil2.c: In function ‘CreateImportFields’:
dlgutil2.c:1401:19: warning: variable ‘is_gap’ set but not used [-Wunused-but-set-variable]
 1401 |   Boolean         is_gap = FALSE;
      |                   ^~~~~~
dlgutil2.c: In function ‘UpdateTableDisplayDialogScrollBars’:
dlgutil2.c:3552:11: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
 3552 |   Int4 x, y;
      |           ^
dlgutil2.c:3552:8: warning: variable ‘x’ set but not used [-Wunused-but-set-variable]
 3552 |   Int4 x, y;
      |        ^
dlgutil2.c: In function ‘GetTableDisplayCell’:
dlgutil2.c:3951:8: warning: variable ‘start_row’ set but not used [-Wunused-but-set-variable]
 3951 |   Int4 start_row, start_col;
      |        ^~~~~~~~~
dlgutil2.c: In function ‘NewCreateInferenceDialog’:
dlgutil2.c:7633:19: warning: variable ‘fnt’ set but not used [-Wunused-but-set-variable]
 7633 |   FonT            fnt;
      |                   ^~~
dlgutil2.c: In function ‘ClickableListOnKey’:
dlgutil2.c:10479:20: warning: variable ‘clp’ set but not used [-Wunused-but-set-variable]
10479 |   ClickableListPtr clp;
      |                    ^~~
dlgutil2.c: In function ‘GetSelectedClickableListText’:
dlgutil2.c:11151:36: warning: variable ‘char_offset’ set but not used [-Wunused-but-set-variable]
11151 |   Int2             item, row, col, char_offset;
      |                                    ^~~~~~~~~~~
dlgutil2.c: In function ‘AutomatchFeatures’:
dlgutil2.c:14210:36: warning: variable ‘s3’ set but not used [-Wunused-but-set-variable]
14210 |   SeqIntPtr                s1, s2, s3;
      |                                    ^~
At top level:
dlgutil2.c:12342:16: warning: ‘ParseMultiListQualOk’ defined but not used [-Wunused-function]
12342 | static Boolean ParseMultiListQualOk (CharPtr val)
      |                ^~~~~~~~~~~~~~~~~~~~
dlgutil2.c:10336:13: warning: ‘ClickClickableListItem’ defined but not used [-Wunused-function]
10336 | static void ClickClickableListItem (DoC d, PoinT pt)
      |             ^~~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:10316:13: warning: ‘DrawClickableListItem’ defined but not used [-Wunused-function]
10316 | static void DrawClickableListItem (DoC d, RectPtr r, Int2 item, Int2 firstLine)
      |             ^~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:8854:13: warning: ‘GetCategoryNumFromName’ defined but not used [-Wunused-function]
 8854 | static Int4 GetCategoryNumFromName (CharPtr category)
      |             ^~~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:1676:16: warning: ‘GetNameForFeature’ defined but not used [-Wunused-function]
 1676 | static CharPtr GetNameForFeature (SeqFeatPtr sfp)
      |                ^~~~~~~~~~~~~~~~~
dlgutil2.c: In function ‘PopulateDayPopup’:
dlgutil2.c:11438:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
11438 |       sprintf (day, "%d", i);
      |                        ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil2.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF e2trmlst.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from e2trmlst.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
e2trmlst.c: In function ‘ReadAFew’:
e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value]
 2230 |   for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) {
      |                                                             ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF e2docsum.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
e2docsum.c: In function ‘FormatCdsSeq’:
e2docsum.c:1523:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable]
 1523 |   SeqFeatPtr         gene = NULL;
      |                      ^~~~
e2docsum.c: In function ‘FetchSequence’:
e2docsum.c:1591:16: warning: variable ‘currDbName’ set but not used [-Wunused-but-set-variable]
 1591 |   CharPtr      currDbName;
      |                ^~~~~~~~~~
e2docsum.c:1580:16: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
 1580 |   Uint1        group_segs = 0;
      |                ^~~~~~~~~~
e2docsum.c: In function ‘SaveDocsumProject’:
e2docsum.c:3606:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 3606 |   SummFormPtr  sfp;
      |                ^~~
e2docsum.c: In function ‘RetrieveGeneration’:
e2docsum.c:4135:19: warning: variable ‘e2ip’ set but not used [-Wunused-but-set-variable]
 4135 |   Entrez2InfoPtr  e2ip;
      |                   ^~~~
e2docsum.c: In function ‘SetupMenus’:
e2docsum.c:4849:16: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
 4849 |   ChoicE       c;
      |                ^
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/bspview.h:48,
                 from e2docsum.c:53:
e2docsum.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strucapi.h:52,
                 from e2docsum.c:62:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchStructureViewer’:
e2docsum.c:2981:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2981 |   system (cmmd);
      |   ^~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchSequin’:
e2docsum.c:2838:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2838 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
e2docsum.c:2883:13: warning: ‘GetBiostrucMaxModels’ defined but not used [-Wunused-function]
 2883 | static Int4 GetBiostrucMaxModels (void)
      |             ^~~~~~~~~~~~~~~~~~~~
e2docsum.c:2850:13: warning: ‘GetBiostrucComplexity’ defined but not used [-Wunused-function]
 2850 | static Int4 GetBiostrucComplexity (void)
      |             ^~~~~~~~~~~~~~~~~~~~~
e2docsum.c:2154:20: warning: ‘cddDocProcs’ defined but not used [-Wunused-variable]
 2154 | static DocPrntProc cddDocProcs [] = { Query_FetchDocSum, Query_FetchFields, FetchUid, NULL };
      |                    ^~~~~~~~~~~
e2docsum.c: In function ‘LaunchStructureViewer’:
e2docsum.c:2980:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=]
 2980 |   sprintf (cmmd, "Cn3D %s &", path);
      |                        ^~     ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchSequin.constprop’:
e2docsum.c:2837:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4084 [-Wformat-overflow=]
 2837 |   sprintf (cmmd, "sequin -x < %s &", path);
      |                               ^~     ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2graphic.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2graphic.c: In function ‘ParseFilterItem’:
asn2graphic.c:1191:21: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
 1191 |   Int2           i, j;
      |                     ^
asn2graphic.c: In function ‘GeneProductsLayoutInternal’:
asn2graphic.c:3730:36: warning: variable ‘featureStart’ set but not used [-Wunused-but-set-variable]
 3730 |   Int4                    newLeft, featureStart, rowMaxRight;
      |                                    ^~~~~~~~~~~~
asn2graphic.c: In function ‘ScaleSntDrawProc’:
asn2graphic.c:4402:28: warning: variable ‘r’ set but not used [-Wunused-but-set-variable]
 4402 |   RecT                     r;
      |                            ^
asn2graphic.c: In function ‘GphSentProc’:
asn2graphic.c:4997:16: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable]
 4997 |   Int4         scaleY;
      |                ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2graphic.c:46:
asn2graphic.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2graphic.c: In function ‘ProcessRows’:
asn2graphic.c:4362:13: warning: ‘SegmentTreeBot’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4362 |       if (! EnsureFeatureHasSegment (FPSP, featdeftype, SegmentTreeBot)) return 0;
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2graphic.h:46,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
../include/picture.h:499:23: warning: ‘SegmentTreeMid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  499 | #define CreateSegment Nlm_CreateSegment
      |                       ^~~~~~~~~~~~~~~~~
asn2graphic.c:4278:27: note: ‘SegmentTreeMid’ was declared here
 4278 |   SegmenT                 SegmentTreeMid;
      |                           ^~~~~~~~~~~~~~
In file included from ../include/asn2graphic.h:46,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
../include/picture.h:499:23: warning: ‘SegmentTreeTop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  499 | #define CreateSegment Nlm_CreateSegment
      |                       ^~~~~~~~~~~~~~~~~
asn2graphic.c:4277:27: note: ‘SegmentTreeTop’ was declared here
 4277 |   SegmenT                 SegmentTreeTop;
      |                           ^~~~~~~~~~~~~~
asn2graphic.c: In function ‘ParseConfigFile’:
asn2graphic.c:1198:27: warning: ‘%s’ directive writing up to 127 bytes into a region of size 120 [-Wformat-overflow=]
 1198 |   sprintf (sect, "filters.%s", filterItemName);
      |                           ^~
......
 1500 |       FIP = ParseFilterItem (buf, defaultRowPadding, defaultGroupPadding, defaultLayout, VCP);
      |                              ~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 9 and 136 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:946:21: warning: ‘.master’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
  946 |   sprintf (sect, "%s.master", appearanceNameInFile);
      |                     ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1006:29: warning: ‘.bioseq’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1006 |   sprintf (outputBuffer, "%s.bioseq", appearanceNameInFile);
      |                             ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1008:29: warning: ‘.imp’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1008 |   sprintf (outputBuffer, "%s.imp", appearanceNameInFile);
      |                             ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1011:31: warning: ‘.import’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1011 |     sprintf (outputBuffer, "%s.import", appearanceNameInFile);
      |                               ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1021:32: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 127 [-Wformat-overflow=]
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                                ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 134 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1021:32: warning: ‘%s’ directive writing 5 bytes into a region of size between 0 and 127 [-Wformat-overflow=]
  707 |       featName = "graph";
      |                  ~~~~~~~        
......
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                                ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 134 bytes into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1021:32: warning: ‘%s’ directive writing likely 7 or more bytes into a region of size between 0 and 127 [-Wformat-overflow=]
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                                ^~
asn2graphic.c:1021:28: note: assuming directive output of 7 bytes
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                            ^~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 136) into a destination of size 128
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF medview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/medview.h:48,
                 from medview.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medview.c: In function ‘PrintMedlineViewForm’:
medview.c:588:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  588 |       system (cmmd);
      |       ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bspview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from bspview.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbfview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gbfview.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gbfview.c: In function ‘RelModeFailText’:
gbfview.c:1004:22: warning: variable ‘hasPubs’ set but not used [-Wunused-but-set-variable]
 1004 |   Boolean            hasPubs;
      |                      ^~~~~~~
gbfview.c: In function ‘PopulateFlatFile’:
gbfview.c:1292:22: warning: variable ‘doColors’ set but not used [-Wunused-but-set-variable]
 1292 |   Boolean            doColors;
      |                      ^~~~~~~~
gbfview.c: In function ‘PopulateFasta’:
gbfview.c:1717:33: warning: left-hand operand of comma expression has no effect [-Wunused-value]
 1717 |     if (ISA_na (bsp->mol)) {TRUE,
      |                                 ^
gbfview.c:1649:20: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
 1649 |   Uint1            group_segs;
      |                    ^~~~~~~~~~
gbfview.c: In function ‘PopulateAsnOrXML’:
gbfview.c:1972:16: warning: variable ‘lookupFar’ set but not used [-Wunused-but-set-variable]
 1972 |   Boolean      lookupFar = FALSE;
      |                ^~~~~~~~~
gbfview.c:1971:16: warning: variable ‘lockFar’ set but not used [-Wunused-but-set-variable]
 1971 |   Boolean      lockFar = FALSE;
      |                ^~~~~~~
gbfview.c: In function ‘PrintFlatFileFastaOrAsn’:
gbfview.c:2494:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2494 |     system (cmmd);
      |     ^~~~~~~~~~~~~
gbfview.c: In function ‘ReleaseIcon’:
gbfview.c:667:21: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  667 |                     system (cmmd);
      |                     ^~~~~~~~~~~~~
At top level:
gbfview.c:1234:13: warning: ‘LookForFarProds’ defined but not used [-Wunused-function]
 1234 | static void LookForFarProds (
      |             ^~~~~~~~~~~~~~~
gbfview.c:1215:13: warning: ‘LookForFarBsp’ defined but not used [-Wunused-function]
 1215 | static void LookForFarBsp (
      |             ^~~~~~~~~~~~~
gbfview.c:944:13: warning: ‘LookForPubs’ defined but not used [-Wunused-function]
  944 | static void LookForPubs (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~~
gbfview.c:289:16: warning: ‘ColorIcon’ defined but not used [-Wunused-function]
  289 | static Boolean ColorIcon (
      |                ^~~~~~~~~
gbfview.c: In function ‘ReleaseIcon’:
gbfview.c:666:42: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
  666 |                     sprintf (cmmd, "open %s", path);
      |                                          ^~   ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gbfview.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gphview.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gphview.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gphview.c: In function ‘ReleaseAlignment’:
gphview.c:1306:18: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
 1306 |   SeqLocPtr      slp;
      |                  ^~~
gphview.c: In function ‘DrawAlignOnAllSequences’:
gphview.c:1391:10: warning: variable ‘vn’ set but not used [-Wunused-but-set-variable]
 1391 |  ValNode vn;
      |          ^~
gphview.c: In function ‘ReleaseDesktop’:
gphview.c:1836:18: warning: variable ‘seg’ set but not used [-Wunused-but-set-variable]
 1836 |   SegmenT        seg;
      |                  ^~~
gphview.c: In function ‘AutoScrollGeneName’:
gphview.c:2100:21: warning: variable ‘num’ set but not used [-Wunused-but-set-variable]
 2100 |   Int2              num;
      |                     ^~~
gphview.c: In function ‘DisplayGeneChoiceWindow’:
gphview.c:2426:22: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 2426 |   PrompT             p;
      |                      ^
gphview.c: In function ‘PrintGraphical’:
gphview.c:3268:14: warning: unused variable ‘ans’ [-Wunused-variable]
 3268 |   MsgAnswer  ans;
      |              ^~~
gphview.c: In function ‘PopulateAsn2GphGraphic’:
gphview.c:3868:16: warning: variable ‘min’ set but not used [-Wunused-but-set-variable]
 3868 |   Int4         min;
      |                ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gphdraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gphdraw.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gphdraw.c: In function ‘GraphSentProc’:
gphdraw.c:195:18: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable]
  195 |   Int4           scaleY;
      |                  ^~~~~~
gphdraw.c: In function ‘DrawGraphToPanel’:
gphdraw.c:453:27: warning: variable ‘xp’ set but not used [-Wunused-but-set-variable]
  453 |   Int4Ptr        xpoints, xp;
      |                           ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gxydraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gxydraw.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gxydraw.c: In function ‘DotXYPlot’:
gxydraw.c:259:19: warning: ‘xaxiscount’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  259 |   gsp->xaxiscount = xaxiscount;
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
gxydraw.c:182:19: note: ‘xaxiscount’ was declared here
  182 |   Int4            xaxiscount, yaxiscount;
      |                   ^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gtrdraw.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gtrdraw.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqpanel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqpanel.c: In function ‘FillFeatureInfo’:
seqpanel.c:427:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable]
  427 |   Int4 j, start, stop;
      |                  ^~~~
seqpanel.c:427:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
  427 |   Int4 j, start, stop;
      |           ^~~~~
seqpanel.c: In function ‘DrawFeatureCodonLines’:
seqpanel.c:1897:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 1897 |   Char              tmp[2];
      |                     ^~~
seqpanel.c: In function ‘DrawFeature’:
seqpanel.c:2127:21: warning: variable ‘prot_len’ set but not used [-Wunused-but-set-variable]
 2127 |   Int4              prot_len;
      |                     ^~~~~~~~
seqpanel.c: In function ‘GetSeqChapterFeatureInfo’:
seqpanel.c:3136:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable]
 3136 |   Int4 j, start, stop;
      |                  ^~~~
seqpanel.c:3136:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 3136 |   Int4 j, start, stop;
      |           ^~~~~
seqpanel.c: In function ‘onSeqEdVScrollBarSeqPanel’:
seqpanel.c:3406:17: warning: variable ‘totallines’ set but not used [-Wunused-but-set-variable]
 3406 |   Int4          totallines;
      |                 ^~~~~~~~~~
seqpanel.c: In function ‘PrintFeature’:
seqpanel.c:3812:28: warning: variable ‘fRight’ set but not used [-Wunused-but-set-variable]
 3812 |   Int4              fLeft, fRight, swap;
      |                            ^~~~~~
seqpanel.c:3812:21: warning: variable ‘fLeft’ set but not used [-Wunused-but-set-variable]
 3812 |   Int4              fLeft, fRight, swap;
      |                     ^~~~~
seqpanel.c: In function ‘PrintTranslatedFrame’:
seqpanel.c:3966:17: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 3966 |   Char          tmp[2];
      |                 ^~~
seqpanel.c: In function ‘ExportSequenceText’:
seqpanel.c:4372:44: warning: pointer targets in passing argument 1 of ‘complement_string’ differ in signedness [-Wpointer-sign]
 4372 |               complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET);
      |                                            ^
      |                                            |
      |                                            Nlm_Uint1Ptr {aka unsigned char *}
In file included from ../include/alignmgr2.h:112,
                 from seqpanel.c:39:
../include/salutil.h:78:47: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1Ptr’ {aka ‘unsigned char *’}
   78 | NLM_EXTERN CharPtr complement_string (CharPtr str);
seqpanel.c:4236:17: warning: variable ‘curr_para_strings’ set but not used [-Wunused-but-set-variable]
 4236 |   ValNodePtr    curr_para_strings = NULL;
      |                 ^~~~~~~~~~~~~~~~~
seqpanel.c:4229:17: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
 4229 |   Uint1Ptr      buf;
      |                 ^~~
seqpanel.c: In function ‘SeqEdOnClick’:
seqpanel.c:4946:21: warning: variable ‘direction’ set but not used [-Wunused-but-set-variable]
 4946 |   Int4              direction;
      |                     ^~~~~~~~~
seqpanel.c: In function ‘SeqAlnOnDrag’:
seqpanel.c:5685:34: warning: variable ‘is_ctrl’ set but not used [-Wunused-but-set-variable]
 5685 |   Boolean       is_double_click, is_ctrl;
      |                                  ^~~~~~~
seqpanel.c:5685:17: warning: variable ‘is_double_click’ set but not used [-Wunused-but-set-variable]
 5685 |   Boolean       is_double_click, is_ctrl;
      |                 ^~~~~~~~~~~~~~~
seqpanel.c: In function ‘ResizeSeqEdView’:
seqpanel.c:5760:8: warning: variable ‘sequence_pos’ set but not used [-Wunused-but-set-variable]
 5760 |   Int4 sequence_pos = 0;
      |        ^~~~~~~~~~~~
seqpanel.c:5755:8: warning: variable ‘height’ set but not used [-Wunused-but-set-variable]
 5755 |   Int4 height, width;
      |        ^~~~~~
seqpanel.c: In function ‘WriteAlignmentInterleaveToFileEx’:
seqpanel.c:8665:22: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8665 |               fputs (fp, printed_line);
      |                      ^~
      |                      |
      |                      FILE *
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/stdio.h:631:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’
  631 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~^~~
seqpanel.c:8665:26: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8665 |               fputs (fp, printed_line);
      |                          ^~~~~~~~~~~~
      |                          |
      |                          Nlm_CharPtr {aka char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/stdio.h:631:64: note: expected ‘FILE * restrict’ but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’}
  631 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                                               ~~~~~~~~~~~~~~~~~^~~~~~~~
seqpanel.c: In function ‘WriteAlignmentContiguousToFile’:
seqpanel.c:8761:20: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8761 |             fputs (fp, printed_line);
      |                    ^~
      |                    |
      |                    FILE *
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/stdio.h:631:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’
  631 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~^~~
seqpanel.c:8761:24: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8761 |             fputs (fp, printed_line);
      |                        ^~~~~~~~~~~~
      |                        |
      |                        Nlm_CharPtr {aka char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/i686-linux-gnu/include/stdio.h:631:64: note: expected ‘FILE * restrict’ but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’}
  631 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                                               ~~~~~~~~~~~~~~~~~^~~~~~~~
seqpanel.c: In function ‘ReverseSequenceStrandsInAlignment’:
seqpanel.c:9008:17: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9008 |   SeqEntryPtr   sep;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqpanel.c:39:
seqpanel.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
seqpanel.c:1171:16: warning: ‘GetAlignmentColumnPercentIDsForAlignmentSection’ defined but not used [-Wunused-function]
 1171 | static double *GetAlignmentColumnPercentIDsForAlignmentSection (BioseqViewPtr bvp, Int4 line, Int4 aln_idx)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
seqpanel.c: In function ‘SeqEdFindPatternDialog’:
../include/vibdefns.h:535:22: warning: ‘g1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  535 | #define AlignObjects Nlm_AlignObjects
      |                      ^~~~~~~~~~~~~~~~
seqpanel.c:7632:25: note: ‘g1’ was declared here
 7632 |   GrouP              h, g1, g2;
      |                         ^~
In file included from ../include/ncbi.h:62,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
seqpanel.c: In function ‘PrintFeature’:
../include/ncbistr.h:331:19: warning: ‘str_prot’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
seqpanel.c:3810:21: note: ‘str_prot’ was declared here
 3810 |   CharPtr           str_prot;
      |                     ^~~~~~~~
seqpanel.c: In function ‘SeqEdExportProc’:
seqpanel.c:4329:13: warning: ‘seq_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4329 |             SeqEdPrintTextLineToFile ((CharPtr)file_line, from, to, seq_pos, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
seqpanel.c:4233:17: note: ‘seq_pos’ was declared here
 4233 |   Int4          seq_pos;
      |                 ^~~~~~~
seqpanel.c: In function ‘onDrawSeqPanel’:
seqpanel.c:1301:24: warning: ‘alnbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1301 |     MemCpy(buf, alnbuf + from, len);
      |                 ~~~~~~~^~~~~~
seqpanel.c:2466:33: note: ‘alnbuf’ was declared here
 2466 |   Uint1Ptr         buf, seqbuf, alnbuf;
      |                                 ^~~~~~
seqpanel.c:1252:3: warning: ‘seqbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1252 |   AlignmentIntervalToString (tmp_salp, row, start, stop, bvp->TargetRow,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1253 |                              bvp->viewWholeEntity, seqbuf, alnbuf, &alnbuf_len,
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1254 |                              bvp->showAlnSubstitutions);
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~
seqpanel.c:2466:25: note: ‘seqbuf’ was declared here
 2466 |   Uint1Ptr         buf, seqbuf, alnbuf;
      |                         ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingengraph.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/ingengraph.h:52,
                 from ingengraph.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingengraph.c: In function ‘Ing_BigEncodeIdxFeat’:
ingengraph.c:262:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  262 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
ingengraph.c: In function ‘Ing_AddOneAlignToOverviewPage’:
ingengraph.c:355:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  355 |   else
      |   ^~~~
ingengraph.c:357:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  357 |     prim = AddRectangle(seg, start, (row)*(-20), stop, (row)*(-20)+j, NO_ARROW, FALSE,0);
      |     ^~~~
ingengraph.c:347:13: warning: unused variable ‘bsp’ [-Wunused-variable]
  347 |   BioseqPtr bsp=NULL;
      |             ^~~
ingengraph.c: In function ‘Ing_AddAlignsToOverviewPage’:
ingengraph.c:372:18: warning: unused variable ‘buf’ [-Wunused-variable]
  372 |   Char           buf[41]={""};
      |                  ^~~
ingengraph.c:367:18: warning: variable ‘NewLine’ set but not used [-Wunused-but-set-variable]
  367 |   Boolean        NewLine=FALSE;
      |                  ^~~~~~~
ingengraph.c: In function ‘Ing_DrawOverviewPage’:
ingengraph.c:492:14: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
  492 |   Int4       offset;
      |              ^~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/ingengraph.h:54,
                 from ingengraph.c:45:
../include/vibdefns.h:468:17: warning: unused variable ‘Nlm_Visible’ [-Wunused-variable]
  468 | #define Visible Nlm_Visible
      |                 ^~~~~~~~~~~
ingengraph.c:488:14: note: in expansion of macro ‘Visible’
  488 |   Boolean    Visible=FALSE;
      |              ^~~~~~~
ingengraph.c: In function ‘Ing_PopOverviewPage’:
ingengraph.c:715:16: warning: variable ‘margin’ set but not used [-Wunused-but-set-variable]
  715 |   Int4         margin, len;
      |                ^~~~~~
ingengraph.c:714:16: warning: unused variable ‘buf’ [-Wunused-variable]
  714 |   Char         buf[50]={""};
      |                ^~~
ingengraph.c:708:16: warning: unused variable ‘sanp’ [-Wunused-variable]
  708 |   SeqAnnotPtr  sanp=NULL;
      |                ^~~~
ingengraph.c: In function ‘Ing_AddAlignsToDetailedPage’:
ingengraph.c:1097:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1097 |       if ((start - offset - (label_len - feat_len)/2)<0)
      |       ^~
ingengraph.c:1099:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1099 |         if (bOver_the_edge)
      |         ^~
ingengraph.c: In function ‘Ing_PopDetailedPage’:
ingengraph.c:1437:16: warning: variable ‘CurrentSeg’ set but not used [-Wunused-but-set-variable]
 1437 |   SegmenT      CurrentSeg=NULL;
      |                ^~~~~~~~~~
ingengraph.c: In function ‘Ing_ExploreSegments’:
ingengraph.c:1829:22: warning: unused variable ‘isDraft’ [-Wunused-variable]
 1829 |   Boolean            isDraft = FALSE;
      |                      ^~~~~~~
ingengraph.c:1827:22: warning: unused variable ‘vnp’ [-Wunused-variable]
 1827 |   ValNodePtr         vnp = NULL;
      |                      ^~~
ingengraph.c:1826:22: warning: unused variable ‘gbp’ [-Wunused-variable]
 1826 |   GBBlockPtr         gbp = NULL;
      |                      ^~~
ingengraph.c:1824:33: warning: variable ‘black’ set but not used [-Wunused-but-set-variable]
 1824 |   Uint1              orange[3], black[3];
      |                                 ^~~~~
ingengraph.c:1823:33: warning: variable ‘lime’ set but not used [-Wunused-but-set-variable]
 1823 |   Uint1              indigo[3], lime[3];
      |                                 ^~~~
ingengraph.c:1823:22: warning: variable ‘indigo’ set but not used [-Wunused-but-set-variable]
 1823 |   Uint1              indigo[3], lime[3];
      |                      ^~~~~~
ingengraph.c: In function ‘Ing_AddGCRect’:
ingengraph.c:1933:17: warning: variable ‘comp2’ set but not used [-Wunused-but-set-variable]
 1933 |    FloatHi      comp2, comp_prev;
      |                 ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/ingengraph.h:63,
                 from ingengraph.c:45:
ingengraph.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
ingengraph.c:71:13: warning: ‘Ing_GetNamesZoomedVal’ declared ‘static’ but never defined [-Wunused-function]
   71 | static void Ing_GetNamesZoomedVal(VieweR vNames,Int4Ptr from, Int4Ptr to,
      |             ^~~~~~~~~~~~~~~~~~~~~
ingengraph.c:602:28: warning: ‘Ing_CollectFeatures1’ defined but not used [-Wunused-function]
  602 | static Boolean LIBCALLBACK Ing_CollectFeatures1(SeqFeatPtr sfp, SeqMgrFeatContextPtr sfc)
      |                            ^~~~~~~~~~~~~~~~~~~~
ingengraph.c:583:24: warning: ‘Ing_SortByChoice’ defined but not used [-Wunused-function]
  583 | static int LIBCALLBACK Ing_SortByChoice (VoidPtr ptr1, VoidPtr ptr2)
      |                        ^~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingenext.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingenext.c: In function ‘Ing_KeepTheBestAlignments’:
ingenext.c:167:20: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable]
  167 |   AMAlignIndex2Ptr amaip = NULL;
      |                    ^~~~~
ingenext.c: In function ‘Ing_HandleQBlastResults’:
ingenext.c:272:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  272 |   while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
      |          ^~~~~~~
ingenext.c: In function ‘Ing_HandleResults’:
ingenext.c:535:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  535 |   while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
      |          ^~~~~~~
ingenext.c: In function ‘Ing_AccepttRNAargsProc’:
ingenext.c:739:18: warning: unused variable ‘paramlist’ [-Wunused-variable]
  739 |   ValNodePtr     paramlist = NULL;
      |                  ^~~~~~~~~
ingenext.c: In function ‘Ing_tRNAscanProc’:
ingenext.c:915:22: warning: unused variable ‘moveMe’ [-Wunused-variable]
  915 |   ValNodePtr         moveMe = NULL;
      |                      ^~~~~~
ingenext.c:906:22: warning: unused variable ‘first’ [-Wunused-variable]
  906 |   TexT               first = NULL;
      |                      ^~~~~
ingenext.c:902:22: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  902 |   ButtoN             b;
      |                      ^
ingenext.c:896:17: warning: unused variable ‘args’ [-Wunused-variable]
  896 |   CharPtr       args = NULL;
      |                 ^~~~
ingenext.c: In function ‘Ing_ReadtRNAConfigFile’:
ingenext.c:1125:15: warning: variable ‘demomode’ set but not used [-Wunused-but-set-variable]
 1125 |   Boolean     demomode = FALSE;
      |               ^~~~~~~~
ingenext.c: In function ‘Ing_DoBlast2Seqs’:
ingenext.c:1312:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable]
 1312 |   Boolean             is_local, first_bsp=TRUE;
      |                       ^~~~~~~~
ingenext.c: In function ‘Ing_CreateDotMatrixForm’:
ingenext.c:1834:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1834 |       while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
      |              ^~~~~~~
ingenext.c: In function ‘Ing_RunSpidey’:
ingenext.c:1994:20: warning: unused variable ‘sanp’ [-Wunused-variable]
 1994 |   SeqAnnotPtr      sanp = NULL;
      |                    ^~~~
ingenext.c:1993:20: warning: unused variable ‘spidp_next’ [-Wunused-variable]
 1993 |   SPI_mRNAPtr      spidp_next = NULL;
      |                    ^~~~~~~~~~
ingenext.c:1992:20: warning: unused variable ‘spidp_head’ [-Wunused-variable]
 1992 |   SPI_mRNAPtr      spidp_head = NULL;
      |                    ^~~~~~~~~~
ingenext.c: In function ‘Ing_ReadmRNAs_ext’:
ingenext.c:2025:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2025 |    while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
      |           ^~~~~~~
ingenext.c: In function ‘Ing_DeleteInsertInGenomic’:
ingenext.c:2522:16: warning: unused variable ‘newsegs’ [-Wunused-variable]
 2522 |   Int2         newsegs = 0, offset = 0;
      |                ^~~~~~~
ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’:
ingenext.c:2777:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2777 |           if (!All)
      |           ^~
ingenext.c:2781:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2781 |             SeqLocReplace(msip, mmis, mmis, mstrand, gsip, gmis, gmis, gstrand);
      |             ^~~~~~~~~~~~~
ingenext.c:2615:21: warning: unused variable ‘str’ [-Wunused-variable]
 2615 |   Char              str[200] = {""};
      |                     ^~~
ingenext.c:2612:22: warning: unused variable ‘amaip’ [-Wunused-variable]
 2612 |   AMAlignIndex2Ptr   amaip = NULL;
      |                      ^~~~~
ingenext.c: In function ‘Ing_MismatchProc’:
ingenext.c:3025:15: warning: unused variable ‘sip’ [-Wunused-variable]
 3025 |   SeqIdPtr    sip = NULL;
      |               ^~~
ingenext.c: In function ‘Ing_PrintSpideyReport’:
ingenext.c:3471:27: warning: variable ‘gmis’ set but not used [-Wunused-but-set-variable]
 3471 |   Int4              mmis, gmis, miscount = 0;
      |                           ^~~~
ingenext.c: In function ‘Ing_PrintBlastReport’:
ingenext.c:3853:18: warning: unused variable ‘more’ [-Wunused-variable]
 3853 |   Boolean        more = FALSE;
      |                  ^~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/vibdefns.h:652:16: warning: variable ‘Nlm_DkGray’ set but not used [-Wunused-but-set-variable]
  652 | #define DkGray Nlm_DkGray
      |                ^~~~~~~~~~
ingenext.c:3850:18: note: in expansion of macro ‘DkGray’
 3850 |   Uint1          DkGray[3];
      |                  ^~~~~~
ingenext.c: In function ‘Ing_PopulateReport’:
ingenext.c:4328:20: warning: unused variable ‘sip’ [-Wunused-variable]
 4328 |   SeqIdPtr         sip=NULL;
      |                    ^~~
ingenext.c:4324:20: warning: unused variable ‘temp’ [-Wunused-variable]
 4324 |   CharPtr          temp = NULL;
      |                    ^~~~
ingenext.c: In function ‘Ing_ResizeReportWindow’:
ingenext.c:4484:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
 4484 |   BaR      hsb;
      |            ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/ingenwin.h:60,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
ingenext.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ingenext.c:130:13: warning: ‘querytimercount’ defined but not used [-Wunused-variable]
  130 | static Int4 querytimercount = 0;
      |             ^~~~~~~~~~~~~~~
ingenext.c:129:13: warning: ‘querytimerlimit’ defined but not used [-Wunused-variable]
  129 | static Int4 querytimerlimit = 100;
      |             ^~~~~~~~~~~~~~~
ingenext.c:59:28: warning: ‘Ing_BlastCallback’ defined but not used [-Wunused-function]
   59 | static Boolean LIBCALLBACK Ing_BlastCallback (BlastResponse *brp,
      |                            ^~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
ingenext.c: In function ‘Ing_DoBlast2Seqs’:
ingenext.c:1457:17: warning: ‘e_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1457 |      e_tmp->next=e_head;
      |      ~~~~~~~~~~~^~~~~~~
ingenext.c: In function ‘Ing_MismatchProc’:
ingenext.c:3170:32: warning: ‘gstart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3170 |         gstart = start + (stop - gstart);
      |                          ~~~~~~^~~~~~~~~
ingenext.c:3206:45: warning: ‘mstart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3206 |       else if (mstart == R1 || mstart == R2 || mstart == R3){
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_AccepttRNAargsProc’:
ingenext.c:780:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  780 |            sprintf (cpy, "%s=%s", upp->param, last);
      |                                ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c:794:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  794 |          sprintf (cpy, "%s=%s", upp->param, last);
      |                              ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’:
ingenext.c:2651:7: warning: ‘nmismatches’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2651 |       for (j = 0; j < nmismatches; j++){
      |       ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingenwin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingenwin.c: In function ‘Ing_PopulateDetailedPage’:
ingenwin.c:134:22: warning: unused variable ‘bSelected’ [-Wunused-variable]
  134 |   Boolean            bSelected = FALSE;
      |                      ^~~~~~~~~
ingenwin.c: In function ‘Ing_DoRange’:
ingenwin.c:394:22: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
  394 |   BioseqPtr          bsp;
      |                      ^~~
ingenwin.c: In function ‘Ing_PopulateCpG’:
ingenwin.c:576:19: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable]
  576 |   Int2    cxChar, nchars;
      |                   ^~~~~~
ingenwin.c: In function ‘Ing_ResizeCpGWindow’:
ingenwin.c:642:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
  642 |   BaR      hsb;
      |            ^~~
ingenwin.c: In function ‘Ing_PopulateMotif’:
ingenwin.c:718:26: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable]
  718 |   Int2           cxChar, nchars;
      |                          ^~~~~~
ingenwin.c:717:24: warning: variable ‘swidth’ set but not used [-Wunused-but-set-variable]
  717 |   Int4           slen, swidth;
      |                        ^~~~~~
ingenwin.c:717:18: warning: variable ‘slen’ set but not used [-Wunused-but-set-variable]
  717 |   Int4           slen, swidth;
      |                  ^~~~
ingenwin.c: In function ‘Ing_ResizeMotifWindow’:
ingenwin.c:785:12: warning: unused variable ‘name’ [-Wunused-variable]
  785 |   CharPtr  name = NULL;
      |            ^~~~
ingenwin.c:783:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
  783 |   BaR      hsb;
      |            ^~~
ingenwin.c: In function ‘Ing_ShowComplexity’:
ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1270 |   while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){
      |          ^
ingenwin.c: In function ‘Ing_CreateNewFeature’:
ingenwin.c:1301:22: warning: unused variable ‘rnatype’ [-Wunused-variable]
 1301 |   Uint1              rnatype=0;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_GetAlignmentIntervals’:
ingenwin.c:1418:20: warning: unused variable ‘master’ [-Wunused-variable]
 1418 |    SeqIdPtr        master = NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_OldGetAlignmentIntervals’:
ingenwin.c:1494:20: warning: unused variable ‘master’ [-Wunused-variable]
 1494 |    SeqIdPtr        master = NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_OldMakeLocListFromSAP’:
ingenwin.c:1613:26: warning: unused variable ‘slp2’ [-Wunused-variable]
 1613 |   SeqLocPtr slp1 = NULL, slp2 = NULL;
      |                          ^~~~
ingenwin.c:1613:13: warning: unused variable ‘slp1’ [-Wunused-variable]
 1613 |   SeqLocPtr slp1 = NULL, slp2 = NULL;
      |             ^~~~
ingenwin.c: In function ‘Ing_OM_MsgFunc’:
ingenwin.c:2380:15: warning: the address of ‘sfc’ will always evaluate as ‘true’ [-Waddress]
 2380 |           if (&sfc)
      |               ^
ingenwin.c:2284:22: warning: unused variable ‘segID’ [-Wunused-variable]
 2284 |   Uint2              segID=0;
      |                      ^~~~~
ingenwin.c:2280:22: warning: unused variable ‘sep’ [-Wunused-variable]
 2280 |   SeqEntryPtr        sep=NULL;
      |                      ^~~
ingenwin.c:2271:31: warning: unused variable ‘number’ [-Wunused-variable]
 2271 |   Int4               score=0, number=0;
      |                               ^~~~~~
ingenwin.c:2271:22: warning: unused variable ‘score’ [-Wunused-variable]
 2271 |   Int4               score=0, number=0;
      |                      ^~~~~
ingenwin.c:2270:34: warning: unused variable ‘n’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                                  ^
ingenwin.c:2270:28: warning: unused variable ‘s2’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                            ^~
ingenwin.c:2270:22: warning: unused variable ‘s1’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                      ^~
ingenwin.c: In function ‘Ing_MoveCursor’:
ingenwin.c:2631:9: warning: variable ‘grayClr2’ set but not used [-Wunused-but-set-variable]
 2631 |   Uint1 grayClr2[3];
      |         ^~~~~~~~
ingenwin.c: In function ‘Ing_FeatViewerClickProc’:
ingenwin.c:2814:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2814 |   if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){
      |       ^~~~~~
ingenwin.c:2804:14: warning: unused variable ‘slp’ [-Wunused-variable]
 2804 |   SeqLocPtr  slp=NULL;
      |              ^~~
ingenwin.c: In function ‘Ing_SequenceClickProc’:
ingenwin.c:2908:22: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable]
 2908 |   SelStructPtr       ssp=NULL;
      |                      ^~~
ingenwin.c: In function ‘Ing_ReadInBlastAsn’:
ingenwin.c:3077:19: warning: unused variable ‘Report’ [-Wunused-variable]
 3077 |   IngReportPtr    Report=NULL;
      |                   ^~~~~~
ingenwin.c:3075:19: warning: unused variable ‘sip’ [-Wunused-variable]
 3075 |   SeqIdPtr        sip=NULL;
      |                   ^~~
ingenwin.c:3074:19: warning: unused variable ‘salp’ [-Wunused-variable]
 3074 |   SeqAlignPtr     salp=NULL;
      |                   ^~~~
ingenwin.c:3073:19: warning: unused variable ‘n_sap’ [-Wunused-variable]
 3073 |   SeqAlignPtr     n_sap=NULL;
      |                   ^~~~~
ingenwin.c: In function ‘Ing_ParseSeqIdFile’:
ingenwin.c:3142:20: warning: unused variable ‘bsp’ [-Wunused-variable]
 3142 |    BioseqPtr       bsp=NULL;
      |                    ^~~
ingenwin.c: In function ‘Ing_ReadInFeatureTable’:
ingenwin.c:3194:20: warning: variable ‘sanp’ set but not used [-Wunused-but-set-variable]
 3194 |    SeqAnnotPtr     sanp;
      |                    ^~~~
ingenwin.c: In function ‘Ing_AssembleGenscanInfo’:
ingenwin.c:3258:17: warning: unused variable ‘slp’ [-Wunused-variable]
 3258 |    SeqLocPtr    slp=NULL;
      |                 ^~~
ingenwin.c: In function ‘Ing_ReadInGenscan’:
ingenwin.c:3300:33: warning: unused variable ‘str’ [-Wunused-variable]
 3300 |    CharPtr         letter=NULL, str=NULL;
      |                                 ^~~
ingenwin.c:3300:20: warning: unused variable ‘letter’ [-Wunused-variable]
 3300 |    CharPtr         letter=NULL, str=NULL;
      |                    ^~~~~~
ingenwin.c:3298:33: warning: unused variable ‘first_pass’ [-Wunused-variable]
 3298 |    Boolean         found=FALSE, first_pass=FALSE;
      |                                 ^~~~~~~~~~
ingenwin.c: In function ‘Ing_AssembleTabDelimited’:
ingenwin.c:3519:17: warning: variable ‘score’ set but not used [-Wunused-but-set-variable]
 3519 |    Int4         score;
      |                 ^~~~~
ingenwin.c:3516:17: warning: unused variable ‘tmp’ [-Wunused-variable]
 3516 |    CharPtr      tmp=NULL;
      |                 ^~~
ingenwin.c: In function ‘Ing_ReadInTabDelimited’:
ingenwin.c:3659:40: warning: variable ‘label_str’ set but not used [-Wunused-but-set-variable]
 3659 |    CharPtr         tmp=NULL, str=NULL, label_str=NULL;
      |                                        ^~~~~~~~~
ingenwin.c:3659:20: warning: unused variable ‘tmp’ [-Wunused-variable]
 3659 |    CharPtr         tmp=NULL, str=NULL, label_str=NULL;
      |                    ^~~
ingenwin.c:3653:20: warning: unused variable ‘lip_tmp’ [-Wunused-variable]
 3653 |    IngInfoPtr      lip_tmp=NULL;
      |                    ^~~~~~~
ingenwin.c:3650:20: warning: unused variable ‘letter’ [-Wunused-variable]
 3650 |    CharPtr         letter=NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_FileOpenSpecial’:
ingenwin.c:3984:16: warning: unused variable ‘Report’ [-Wunused-variable]
 3984 |   IngReportPtr Report=NULL;
      |                ^~~~~~
ingenwin.c: In function ‘Ing_FileOpenMain’:
ingenwin.c:4078:21: warning: unused variable ‘sep_orig’ [-Wunused-variable]
 4078 |   SeqEntryPtr       sep_orig=NULL, sep=NULL;
      |                     ^~~~~~~~
ingenwin.c: In function ‘Ing_ResizeMainWindow’:
ingenwin.c:4187:25: warning: variable ‘InfoHeight’ set but not used [-Wunused-but-set-variable]
 4187 |   Int2     RulerHeight, InfoHeight;
      |                         ^~~~~~~~~~
ingenwin.c: In function ‘Ing_OpenFromFileORNetwork’:
ingenwin.c:4491:25: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 4491 |   ButtoN              b,b2;
      |                         ^~
ingenwin.c: In function ‘Ing_EditFeature’:
ingenwin.c:4640:22: warning: variable ‘igvp’ set but not used [-Wunused-but-set-variable]
 4640 |   IngGenomeViewerPtr igvp=NULL;
      |                      ^~~~
ingenwin.c: In function ‘Ing_MarkSeqAnnot’:
ingenwin.c:4713:16: warning: unused variable ‘bNoParent’ [-Wunused-variable]
 4713 |  Boolean       bNoParent = FALSE;
      |                ^~~~~~~~~
ingenwin.c: In function ‘Ing_PropagateClickProc’:
ingenwin.c:5064:22: warning: unused variable ‘primID’ [-Wunused-variable]
 5064 |   Uint2              primID=0;
      |                      ^~~~~~
ingenwin.c:5063:22: warning: unused variable ‘itemtype’ [-Wunused-variable]
 5063 |   Uint2              itemtype=0;
      |                      ^~~~~~~~
ingenwin.c:5062:22: warning: unused variable ‘itemID’ [-Wunused-variable]
 5062 |   Uint4              itemID=0;
      |                      ^~~~~~
ingenwin.c:5061:22: warning: unused variable ‘entityID’ [-Wunused-variable]
 5061 |   Uint2              entityID=0;
      |                      ^~~~~~~~
ingenwin.c:5060:22: warning: unused variable ‘ssp’ [-Wunused-variable]
 5060 |   SelStructPtr       ssp=NULL;
      |                      ^~~
ingenwin.c:5059:22: warning: unused variable ‘igvp’ [-Wunused-variable]
 5059 |   IngGenomeViewerPtr igvp=NULL;
      |                      ^~~~
ingenwin.c: In function ‘Ing_PrintCompProteins’:
ingenwin.c:5146:32: warning: unused variable ‘str2’ [-Wunused-variable]
 5146 |   Char       str1[200] = {""}, str2[10] = {""};
      |                                ^~~~
ingenwin.c: In function ‘Ing_PropagateReport’:
ingenwin.c:5282:14: warning: variable ‘ARROW’ set but not used [-Wunused-but-set-variable]
 5282 |   Uint1      ARROW=NO_ARROW;
      |              ^~~~~
ingenwin.c:5279:14: warning: unused variable ‘stringwidth’ [-Wunused-variable]
 5279 |   Int4       stringwidth = 0;
      |              ^~~~~~~~~~~
ingenwin.c:5277:14: warning: unused variable ‘left’ [-Wunused-variable]
 5277 |   Int4       left = 10;
      |              ^~~~
ingenwin.c:5276:14: warning: variable ‘prim’ set but not used [-Wunused-but-set-variable]
 5276 |   PrimitivE  prim;
      |              ^~~~
ingenwin.c: In function ‘Ing_DoPropagate’:
ingenwin.c:5596:14: warning: unused variable ‘strErr’ [-Wunused-variable]
 5596 |   Char       strErr[50]={""};
      |              ^~~~~~
ingenwin.c: In function ‘Ing_GetFromNetwork’:
ingenwin.c:7518:11: warning: unused variable ‘szAppName’ [-Wunused-variable]
 7518 |   Char    szAppName  [10]={"Ingenue"};
      |           ^~~~~~~~~
ingenwin.c: In function ‘Ing_SetupMainWindow’:
ingenwin.c:7761:16: warning: unused variable ‘szAppName’ [-Wunused-variable]
 7761 | Char           szAppName [10]={"Ingenue"};
      |                ^~~~~~~~~
ingenwin.c:7760:48: warning: unused variable ‘str2’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                                                ^~~~
ingenwin.c:7760:33: warning: unused variable ‘str1’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                                 ^~~~
ingenwin.c:7760:16: warning: unused variable ‘title’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/ingenwin.h:60,
                 from ingenwin.c:45:
ingenwin.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from ingenwin.c:45:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ingenwin.c:7552:13: warning: ‘Ing_ItemtoNetwork’ defined but not used [-Wunused-function]
 7552 | static void Ing_ItemtoNetwork(IteM i){
      |             ^~~~~~~~~~~~~~~~~
ingenwin.c:6717:13: warning: ‘Ing_BspListProc’ defined but not used [-Wunused-function]
 6717 | static void Ing_BspListProc(IteM i)
      |             ^~~~~~~~~~~~~~~
ingenwin.c:5535:16: warning: ‘Ing_KeywordAlreadyInList’ defined but not used [-Wunused-function]
 5535 | static Boolean Ing_KeywordAlreadyInList (ValNodePtr head, CharPtr kwd)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:1869:16: warning: ‘Ing_DeSelectPrim’ defined but not used [-Wunused-function]
 1869 | static Boolean Ing_DeSelectPrim (SegmenT seg, PrimitivE prim, Uint2 segID, Uint2 primID, Uint2 primCt, VoidPtr userdata)
      |                ^~~~~~~~~~~~~~~~
ingenwin.c:1610:18: warning: ‘Ing_OldMakeLocListFromSAP’ defined but not used [-Wunused-function]
 1610 | static SeqLocPtr Ing_OldMakeLocListFromSAP(SeqAlignPtr sap)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:1487:23: warning: ‘Ing_OldGetAlignmentIntervals’ defined but not used [-Wunused-function]
 1487 | static IngIvalInfoPtr Ing_OldGetAlignmentIntervals (SeqAlignPtr sap, Int4 from_row, Int4 to_row, Int4 from, Int4 to, Uint1 strand)
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from ingenwin.c:45:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
ingenwin.c: In function ‘Ing_ReplaceMismatchedProc’:
ingenwin.c:4902:3: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4902 |   Ing_ReplaceAllMismatchedInLocation(igvp, rmp->sap, start, stop, GetStatus(rmp->all), GetStatus(rmp->gaps), GetStatus(rmp->inserts));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:4902:3: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
ingenwin.c: In function ‘Ing_PropagateReport’:
ingenwin.c:5353:17: warning: ‘%s’ directive writing up to 299 bytes into a region of size 255 [-Wformat-overflow=]
 5353 |   sprintf(str, "%s", pfp->name);
      |                 ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 1 and 300 bytes into a destination of size 255
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:5229:37: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5229 |     for (i = last_pos; i <= exit; i += nchars_row){
      |                                   ~~^~~~~~~~~~~~~
ingenwin.c:5137:17: note: ‘j’ was declared here
 5137 |   Int4       i, j, k, row;
      |                 ^
ingenwin.c: In function ‘Ing_DoPropagate’:
ingenwin.c:5625:26: warning: ‘ already exists. Do you stil...’ directive writing 51 bytes into a region of size between 1 and 300 [-Wformat-overflow=]
 5625 |     sprintf (str_buf, "%s already exists. Do you still want to propagate it?", pfp->name);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 52 and 351 bytes into a destination of size 300
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_FileOpenSpecial’:
ingenwin.c:3290:13: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3290 |    slp_list=Ing_MakeSlpList(NULL, n/2, ivals, strand, igvp->bsp->id);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:3255:17: note: ‘strand’ was declared here
 3255 |    Uint1        strand;
      |                 ^~~~~~
ingenwin.c: In function ‘Ing_KozakProc’:
ingenwin.c:1048:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1048 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:1006:22: note: ‘ReportW’ was declared here
 1006 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_SignalPeptideProc’:
ingenwin.c:1099:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1099 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:1057:22: note: ‘ReportW’ was declared here
 1057 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_RepeatsProc’:
ingenwin.c:997:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  997 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:955:22: note: ‘ReportW’ was declared here
  955 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_PolyAProc’:
ingenwin.c:946:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  946 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:904:22: note: ‘ReportW’ was declared here
  904 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_CpGProc’:
ingenwin.c:895:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  895 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:857:22: note: ‘ReportW’ was declared here
  857 |   WindoW             ReportW;
      |                      ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF macrodlg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from macrodlg.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
macrodlg.c: In function ‘ExistingTextDialog’:
macrodlg.c:1959:22: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable]
 1959 |   PrompT             ppt;
      |                      ^~~
macrodlg.c: In function ‘EndDistanceToDialog’:
macrodlg.c:3076:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3076 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c:3082:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3082 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c:3088:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 3088 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c: In function ‘SourceQualChoiceDialog’:
macrodlg.c:3757:48: warning: variable ‘b4’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                                ^~
macrodlg.c:3757:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                     ^~
macrodlg.c:3757:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                 ^~
macrodlg.c:3757:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                             ^~
macrodlg.c: In function ‘SourceConstraintDialog’:
macrodlg.c:3995:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                                     ^~
macrodlg.c:3995:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                                 ^~
macrodlg.c:3995:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                             ^~
macrodlg.c: In function ‘CDSGeneProtQualConstraintDialog’:
macrodlg.c:4309:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                                     ^~
macrodlg.c:4309:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                                 ^~
macrodlg.c:4309:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                             ^~
macrodlg.c: In function ‘QuantityConstraintToDialog’:
macrodlg.c:7368:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 7368 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
macrodlg.c:7373:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 7373 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
macrodlg.c:7378:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
 7378 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long long int}
      |                    %lld
macrodlg.c: In function ‘TestApplyActionDialog’:
macrodlg.c:12965:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
12965 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘TestEditActionDialog’:
macrodlg.c:13170:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
13170 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘TestRemoveOutsideActionDialog’:
macrodlg.c:13328:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
13328 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘ApplyFeatureActionToDialog’:
macrodlg.c:15186:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
15186 |         sprintf (num, "%d^", action->location->data.intvalue);
      |                        ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                         |                          |
      |                         int                        Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c:15188:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
15188 |         sprintf (num, "%d", action->location->data.intvalue + 1);
      |                        ~^   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                         |                                   |
      |                         int                                 Nlm_Int8 {aka long long int}
      |                        %lld
macrodlg.c: In function ‘AddMacroActions’:
macrodlg.c:20523:25: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
20523 |   Boolean               rval = FALSE;
      |                         ^~~~
macrodlg.c: In function ‘PointerToSampleDialog’:
macrodlg.c:20659:19: warning: variable ‘max_char_per_line’ set but not used [-Wunused-but-set-variable]
20659 |   Int4            max_char_per_line;
      |                   ^~~~~~~~~~~~~~~~~
macrodlg.c: In function ‘SampleDialogCopy’:
macrodlg.c:20779:53: warning: variable ‘last_col’ set but not used [-Wunused-but-set-variable]
20779 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                                     ^~~~~~~~
macrodlg.c:20779:42: warning: variable ‘first_col’ set but not used [-Wunused-but-set-variable]
20779 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                          ^~~~~~~~~
macrodlg.c: In function ‘SingleMacroAcceptButton’:
macrodlg.c:22071:33: warning: variable ‘num_features’ set but not used [-Wunused-but-set-variable]
22071 |   Int4              num_fields, num_features;
      |                                 ^~~~~~~~~~~~
macrodlg.c:22071:21: warning: variable ‘num_fields’ set but not used [-Wunused-but-set-variable]
22071 |   Int4              num_fields, num_features;
      |                     ^~~~~~~~~~
macrodlg.c: In function ‘LaunchMacroTemplateEditor’:
macrodlg.c:23785:23: warning: variable ‘bfp’ set but not used [-Wunused-but-set-variable]
23785 |   BaseFormPtr         bfp;
      |                       ^~~
macrodlg.c: In function ‘SearchFuncToDialog’:
macrodlg.c:25755:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
25755 |       sprintf (buf, "%d", func->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~~
      |                       |             |
      |                       int           Nlm_Int8 {aka long long int}
      |                      %lld
macrodlg.c:25776:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
25776 |       sprintf (buf, "%d", func->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~~
      |                       |             |
      |                       int           Nlm_Int8 {aka long long int}
      |                      %lld
At top level:
macrodlg.c:20095:13: warning: ‘ChangeMacroActionPopup’ defined but not used [-Wunused-function]
20095 | static void ChangeMacroActionPopup (LisT t)
      |             ^~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:20038:13: warning: ‘GetPopupChoiceForActionChoice’ defined but not used [-Wunused-function]
20038 | static Int2 GetPopupChoiceForActionChoice (Uint1 action_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:19715:13: warning: ‘GetCategoryForActionChoice’ defined but not used [-Wunused-function]
19715 | static Int2 GetCategoryForActionChoice (Uint1 action_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:19698:14: warning: ‘GetActionChoiceForCategoryPopupChoice’ defined but not used [-Wunused-function]
19698 | static Uint1 GetActionChoiceForCategoryPopupChoice (Int2 category, Int2 popup_choice)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c: In function ‘ActionToSingleMacroActionForm’:
macrodlg.c:22273:30: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
22273 |   Show (frm->action_dlgs[val - 1]);
      |                          ~~~~^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF biosrc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/biosrc.h:48,
                 from biosrc.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
biosrc.c: In function ‘CreateSimpleBioSourceDialog’:
biosrc.c:2455:18: warning: variable ‘indexerVersion’ set but not used [-Wunused-but-set-variable]
 2455 |   Boolean        indexerVersion;
      |                  ^~~~~~~~~~~~~~
biosrc.c: In function ‘CreateBioSourceDialog’:
biosrc.c:3615:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
 3615 |   PrompT         y;
      |                  ^
At top level:
biosrc.c:3291:26: warning: ‘EnumListFromQualNameAssoc’ defined but not used [-Wunused-function]
 3291 | static EnumFieldAssocPtr EnumListFromQualNameAssoc (Nlm_QualNameAssocPtr qp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:3100:16: warning: ‘SubsourceDialogToSubSourcePtr’ defined but not used [-Wunused-function]
 3100 | static Pointer SubsourceDialogToSubSourcePtr (DialoG d)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2677:13: warning: ‘SubSourcePtrToSubsourceDialog’ defined but not used [-Wunused-function]
 2677 | static void SubSourcePtrToSubsourceDialog (DialoG d, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2617:16: warning: ‘OrgmodDialogToOrgModPtr’ defined but not used [-Wunused-function]
 2617 | static Pointer OrgmodDialogToOrgModPtr (DialoG d)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2568:13: warning: ‘OrgModPtrToOrgmodDialog’ defined but not used [-Wunused-function]
 2568 | static void OrgModPtrToOrgmodDialog (DialoG d, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdrgn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/cdrgn.h:89,
                 from cdrgn.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdrgn.c: In function ‘SetBestProteinFeature’:
cdrgn.c:1003:21: warning: unused variable ‘prp’ [-Wunused-variable]
 1003 |     ProtRefPtr      prp;
      |                     ^~~
cdrgn.c: In function ‘CdRegionPtrToForm’:
cdrgn.c:1050:19: warning: unused variable ‘vnp’ [-Wunused-variable]
 1050 |   ValNodePtr      vnp;
      |                   ^~~
cdrgn.c: In function ‘ProductToSeqLocPtr’:
cdrgn.c:1293:19: warning: variable ‘rfp’ set but not used [-Wunused-but-set-variable]
 1293 |   RnaFormPtr      rfp = NULL;
      |                   ^~~
cdrgn.c: In function ‘CreateCodeBreakAlist’:
cdrgn.c:1926:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 1926 |   Uint1            first;
      |                    ^~~~~
cdrgn.c: In function ‘CodeBreakPtrToCodeBreakDialog’:
cdrgn.c:1977:19: warning: variable ‘aa’ set but not used [-Wunused-but-set-variable]
 1977 |   Uint1           aa;
      |                   ^~
cdrgn.c: In function ‘PopulateAAPopup’:
cdrgn.c:7041:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 7041 |   Uint1            first;
      |                    ^~~~~
cdrgn.c: In function ‘RnaRefPtrToForm’:
cdrgn.c:7557:17: warning: unused variable ‘is_iMet’ [-Wunused-variable]
 7557 |   Boolean       is_iMet = FALSE;
      |                 ^~~~~~~
cdrgn.c:7556:17: warning: unused variable ‘is_fMet’ [-Wunused-variable]
 7556 |   Boolean       is_fMet = FALSE;
      |                 ^~~~~~~
At top level:
cdrgn.c:6851:13: warning: ‘ConvertRnaRefNameToProductQual’ defined but not used [-Wunused-function]
 6851 | static void ConvertRnaRefNameToProductQual (SeqFeatPtr sfp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdrgn.c:6789:13: warning: ‘RemoveQualByName’ defined but not used [-Wunused-function]
 6789 | static void RemoveQualByName (SeqFeatPtr sfp, CharPtr qual_name)
      |             ^~~~~~~~~~~~~~~~
cdrgn.c:6770:18: warning: ‘FindOrAddQual’ defined but not used [-Wunused-function]
 6770 | static GBQualPtr FindOrAddQual (SeqFeatPtr sfp, CharPtr qual_name)
      |                  ^~~~~~~~~~~~~
cdrgn.c:6323:15: warning: ‘CreateMrnaUserObjectDialog’ defined but not used [-Wunused-function]
 6323 | static DialoG CreateMrnaUserObjectDialog (GrouP h, CharPtr label, SeqEntryPtr sep, BaseFormPtr bfp)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~
cdrgn.c:6246:14: warning: ‘check_rna_type’ defined but not used [-Wunused-function]
 6246 | static Uint1 check_rna_type (Uint1 type)
      |              ^~~~~~~~~~~~~~
cdrgn.c:3183:13: warning: ‘SetComment’ defined but not used [-Wunused-function]
 3183 | static void SetComment (CharPtr new_comment, WindoW w)
      |             ^~~~~~~~~~
cdrgn.c:2149:13: warning: ‘AccessionToGi’ defined but not used [-Wunused-function]
 2149 | static Int4 AccessionToGi (CharPtr string)
      |             ^~~~~~~~~~~~~
cdrgn.c:961:13: warning: ‘FormToProtRef’ defined but not used [-Wunused-function]
  961 | static void FormToProtRef(CdRgnFormPtr cfp, ProtRefPtr prp)
      |             ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF import.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from import.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
import.c:3776:22: warning: ‘kDoNotEditTitle’ initialized and declared ‘extern’
 3776 | extern const CharPtr kDoNotEditTitle = "You are manually editing a title. If you continue, the title will not be automatically updated if the taxonomy information changes. Are you sure you want to do this? It is a very bad idea.";
      |                      ^~~~~~~~~~~~~~~
import.c: In function ‘ExpandSecondaries’:
import.c:3394:30: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=]
 3394 |           sprintf (numbers, "%*ld", digits, (long) idx);
      |                              ^~~~
import.c:3394:29: note: directive argument in the range [1, 2147483647]
 3394 |           sprintf (numbers, "%*ld", digits, (long) idx);
      |                             ^~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from import.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pubdesc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pubdesc.c: In function ‘MakeReplaceAuthorsForm’:
pubdesc.c:4303:24: warning: variable ‘pepp’ set but not used [-Wunused-but-set-variable]
 4303 |   PubdescEditProcsPtr  pepp;
      |                        ^~~~
pubdesc.c: In function ‘DisplayDocSum’:
pubdesc.c:4865:9: warning: variable ‘lineheight’ set but not used [-Wunused-but-set-variable]
 4865 |   Int2  lineheight;
      |         ^~~~~~~~~~
At top level:
pubdesc.c:5377:13: warning: ‘Quit’ defined but not used [-Wunused-function]
 5377 | static void Quit (ButtoN b)
      |             ^~~~
pubdesc.c:5113:14: warning: ‘AddAll’ defined but not used [-Wunused-function]
 5113 | static  void AddAll(Entrez2RequestPtr e2rp, CharPtr term, Boolean is_1st)
      |              ^~~~~~
pubdesc.c: In function ‘SendQuery’:
pubdesc.c:5096:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5096 |       sprintf (year_buf, "%d", year - 1);
      |                             ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pubdesc.c:5099:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5099 |       sprintf (year_buf, "%d", year);
      |                             ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pubdesc.c:5102:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5102 |       sprintf (year_buf, "%d", year + 1);
      |                             ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsub.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/seqsub.h:58,
                 from seqsub.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqsub.c: In function ‘SeqSubmitFromTemplateEditor’:
seqsub.c:3250:20: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable]
 3250 |   ObjMgrDataPtr    omdp;
      |                    ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mapgene.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from mapgene.c:2:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapgene.c: In function ‘load_new_align’:
mapgene.c:79:17: warning: variable ‘match_slp’ set but not used [-Wunused-but-set-variable]
   79 |  SeqLocPtr slp, match_slp, t_slp;
      |                 ^~~~~~~~~
mapgene.c: In function ‘figure_loc_by_position’:
mapgene.c:1039:20: warning: variable ‘center’ set but not used [-Wunused-but-set-variable]
 1039 |  Int4 start, stop, center;
      |                    ^~~~~~
mapgene.c: In function ‘cvt_loc_for_single_gene’:
mapgene.c:1958:29: warning: variable ‘p_align_offset’ set but not used [-Wunused-but-set-variable]
 1958 |  Int4 offset, align_offset, p_align_offset;
      |                             ^~~~~~~~~~~~~~
mapgene.c:1957:7: warning: unused variable ‘shift’ [-Wunused-variable]
 1957 |  Int4 shift = 0;
      |       ^~~~~
mapgene.c: In function ‘print_header_for_center’:
mapgene.c:2693:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable]
 2693 |  CharPtr link;
      |          ^~~~
mapgene.c: In function ‘PrintGeneticMarkerForOneMap’:
mapgene.c:3635:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable]
 3635 |  CharPtr link;
      |          ^~~~
At top level:
mapgene.c:3207:16: warning: ‘convert_center_name_to_gifname’ defined but not used [-Wunused-function]
 3207 | static Boolean convert_center_name_to_gifname (CharPtr center_name, CharPtr gif_name)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mapgene.c:1788:13: warning: ‘adjust_slp_list’ defined but not used [-Wunused-function]
 1788 | static void adjust_slp_list(ValNodePtr slp_list)
      |             ^~~~~~~~~~~~~~~
mapgene.c:1748:16: warning: ‘merge_slp_list’ defined but not used [-Wunused-function]
 1748 | static Boolean merge_slp_list(ValNodePtr PNTR gene_slp_list, ValNodePtr slp_list)
      |                ^~~~~~~~~~~~~~
mapgene.c:1280:13: warning: ‘change_anchor_to_front’ defined but not used [-Wunused-function]
 1280 | static void change_anchor_to_front(ValNodePtr msp_list, SeqIdPtr anchor_id)
      |             ^~~~~~~~~~~~~~~~~~~~~~
mapgene.c:200:13: warning: ‘get_center_pointer’ defined but not used [-Wunused-function]
  200 | static Int4 get_center_pointer(SeqLocPtr slp)
      |             ^~~~~~~~~~~~~~~~~~
mapgene.c:27:13: warning: ‘print_this_id’ defined but not used [-Wunused-function]
   27 | static void print_this_id (SeqIdPtr sip)
      |             ^~~~~~~~~~~~~
mapgene.c: In function ‘PrintHTMLContigAlign.constprop’:
mapgene.c:2798:30: warning: ‘%s’ directive writing up to 30 bytes into a region of size 25 [-Wformat-overflow=]
 2798 |    sprintf(link_name, "CONTIG%s", alpha_name);
      |                              ^~   ~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from mapgene.c:2:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 37 bytes into a destination of size 31
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mapgene.c: In function ‘PrintContigForOneMap’:
mapgene.c:3126:2: warning: ‘yac_num’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3126 |  for(i = 0; i<num; ++i)
      |  ^~~
mapgene.c:3152:7: note: ‘yac_num’ was declared here
 3152 |  Int4 yac_num;
      |       ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prtgene.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/tofile.h:66,
                 from ../include/prtgene.h:3,
                 from prtgene.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prtgene.c: In function ‘print_sfp_ext’:
prtgene.c:108:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  108 |      if(ufp->choice == 2) /*integer */
      |      ^~
prtgene.c:110:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  110 |       print_store_buf(temp, buf, buf_size, &len, fp);
      |       ^~~~~~~~~~~~~~~
prtgene.c: In function ‘print_store_for_html’:
prtgene.c:749:7: warning: variable ‘white_sp’ set but not used [-Wunused-but-set-variable]
  749 |  Char white_sp;
      |       ^~~~~~~~
prtgene.c: In function ‘PrintSequenceToFile.isra’:
prtgene.c:950:28: warning: ‘ (bp) on the genome’ directive writing 19 bytes into a region of size between 16 and 96 [-Wformat-overflow=]
  950 |    sprintf(temp, ": %s - %s (bp) on the genome", temp_1, temp_2);
      |                            ^~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/tofile.h:66,
                 from ../include/prtgene.h:3,
                 from prtgene.c:1:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 25 and 105 bytes into a destination of size 101
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbidesk.a
ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbidesk.a ../lib
ranlib ../lib/libncbidesk.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvclick.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvclick.c:248:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvclick.c: In function ‘DDV_SendBSPSelectMsg_OLD’:
ddvclick.c:979:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
  979 | Boolean     bDeselectAll=TRUE;
      |             ^~~~~~~~~~~~
ddvclick.c: In function ‘DDV_SendBSPSelectMsg’:
ddvclick.c:1090:18: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
 1090 |   Boolean        bDeselectAll=TRUE;
      |                  ^~~~~~~~~~~~
ddvclick.c: In function ‘DDV_DragProc’:
ddvclick.c:2013:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable]
 2013 | ParaGPtr    cur_pgp=NULL;
      |             ^~~~~~~
ddvclick.c: In function ‘DDV_HoldProc’:
ddvclick.c:2494:13: warning: unused variable ‘Scroll’ [-Wunused-variable]
 2494 | Boolean     Scroll=FALSE;
      |             ^~~~~~
ddvclick.c:2490:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable]
 2490 | ParaGPtr    cur_pgp=NULL;
      |             ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
ddvclick.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvclick.c:1823:13: warning: ‘EraseOutline’ defined but not used [-Wunused-function]
 1823 | static void EraseOutline(PaneL p) {
      |             ^~~~~~~~~~~~
ddvclick.c:1811:16: warning: ‘RectanglesAreSame’ defined but not used [-Wunused-function]
 1811 | static Boolean RectanglesAreSame(RecT rc1, RecT rc2) {
      |                ^~~~~~~~~~~~~~~~~
ddvclick.c:970:13: warning: ‘DDV_SendBSPSelectMsg_OLD’ defined but not used [-Wunused-function]
  970 | static void DDV_SendBSPSelectMsg_OLD(DdvMainPtr dmp,Int4 bsp_coord,Int4 SeqAlign_coord,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c:611:13: warning: ‘DDV_GetSeqAlignCoordGivenCol’ defined but not used [-Wunused-function]
  611 | static Int4 DDV_GetSeqAlignCoordGivenCol(DdvMainPtr dmp, Int4 Disp_coord) {
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c: In function ‘DDV_GetSeqNameGivenRow’:
ddvclick.c:956:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  956 |   if (!sip)
      |      ^
ddvclick.c: In function ‘DDV_ReleaseProc’:
ddvclick.c:1127:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1127 |   slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c:1091:18: note: ‘pgp’ was declared here
 1091 |   ParaGPtr       pgp;
      |                  ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvgraph.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvgraph.c:210:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvgraph.c: In function ‘DDV_DrawSequence’:
ddvgraph.c:701:31: warning: unused variable ‘pos’ [-Wunused-variable]
  701 | Int2            decal=1,i,x,y,pos=0;
      |                               ^~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
ddvgraph.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvopen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvopen.c:372:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvopen.c: In function ‘DDV_GetAndCheckSeqAlign’:
ddvopen.c:1739:8: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable]
 1739 | Uint2  nRet=DVV_MSG_M_OK;
      |        ^~~~
ddvopen.c: In function ‘DDV_FOpenAcceptProc’:
ddvopen.c:1932:11: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable]
 1932 | Uint2     nRet=DVV_MSG_M_OK,The_entityID;
      |           ^~~~
ddvopen.c: In function ‘DDV_NetOpen_okProc’:
ddvopen.c:2141:8: warning: variable ‘AccessType’ set but not used [-Wunused-but-set-variable]
 2141 | Int2   AccessType,procval;
      |        ^~~~~~~~~~
ddvopen.c: In function ‘DDV_StartMainWin_Slave’:
ddvopen.c:2411:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 2411 |     else
      |     ^~~~
ddvopen.c:2417:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 2417 |  if (!w) return(NULL);
      |  ^~
ddvopen.c: In function ‘DDV_ImportBioseqDlg’:
ddvopen.c:2819:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 2819 |     ButtoN b;
      |            ^
ddvopen.c: In function ‘DDV_HideDlg’:
ddvopen.c:3135:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 3135 |     ButtoN b;
      |            ^
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from ddvopen.c:376:
ddvopen.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from ddvopen.c:376:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvopen.c:2111:16: warning: ‘DDV_IsInt’ defined but not used [-Wunused-function]
 2111 | static Boolean DDV_IsInt(CharPtr szAccess)
      |                ^~~~~~~~~
ddvopen.c:1285:13: warning: ‘DDV_NoConvert’ defined but not used [-Wunused-function]
 1285 | static void DDV_NoConvert(ButtoN g) {
      |             ^~~~~~~~~~~~~
ddvopen.c:1272:13: warning: ‘DDV_Convert’ defined but not used [-Wunused-function]
 1272 | static void DDV_Convert(ButtoN g) {
      |             ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvpanel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvpanel.c:389:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvpanel.c: In function ‘DDV_CreateViewerPanel’:
ddvpanel.c:1177:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable]
 1177 | Int2   cxChar,cyChar;
      |        ^~~~~~
ddvpanel.c: In function ‘DDV_DispStyles_OkProc’:
ddvpanel.c:1543:21: warning: unused variable ‘szBuf’ [-Wunused-variable]
 1543 | Char                szBuf[15]={""};
      |                     ^~~~~
ddvpanel.c: In function ‘DDV_ExportTexte’:
ddvpanel.c:2799:40: warning: variable ‘browse’ set but not used [-Wunused-but-set-variable]
 2799 | ButtoN        chk2,chk3,chk4,chk5,chk6,browse,ok;
      |                                        ^~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
ddvpanel.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3377:13: warning: ‘write_annot’ defined but not used [-Wunused-function]
 3377 | static void write_annot(SeqAlignPtr align)
      |             ^~~~~~~~~~~
ddvpanel.c:3296:13: warning: ‘DDV_MoveRightBoundaryRight’ defined but not used [-Wunused-function]
 3296 | static void DDV_MoveRightBoundaryRight(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3290:13: warning: ‘DDV_MoveRightBoundaryLeft’ defined but not used [-Wunused-function]
 3290 | static void DDV_MoveRightBoundaryLeft(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3284:13: warning: ‘DDV_MoveLeftBoundaryRight’ defined but not used [-Wunused-function]
 3284 | static void DDV_MoveLeftBoundaryRight(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3278:13: warning: ‘DDV_MoveLeftBoundaryLeft’ defined but not used [-Wunused-function]
 3278 | static void DDV_MoveLeftBoundaryLeft(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3272:13: warning: ‘DDV_MoveRowRight’ defined but not used [-Wunused-function]
 3272 | static void DDV_MoveRowRight(IteM i)
      |             ^~~~~~~~~~~~~~~~
ddvpanel.c:3266:13: warning: ‘DDV_MoveRowLeft’ defined but not used [-Wunused-function]
 3266 | static void DDV_MoveRowLeft(IteM i)
      |             ^~~~~~~~~~~~~~~
ddvpanel.c:3024:13: warning: ‘DDV_DeleteRow’ defined but not used [-Wunused-function]
 3024 | static void DDV_DeleteRow(IteM i)
      |             ^~~~~~~~~~~~~
ddvpanel.c: In function ‘DDV_SortPGPLineNum’:
ddvpanel.c:2441:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2441 |   n+=pgp->nLines;
      |      ~~~^~~~~~~~
rm -f libddvlib.a
ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libddvlib.a ../lib
ranlib ../lib/libddvlib.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF corematx.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corematx.c:135:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dvncode.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from dvncode.c:69:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb1.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb1.c: In function ‘BiostrucAsnRead’:
objmmdb1.c:90:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   90 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucIdFree’:
objmmdb1.c:323:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  323 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucIdAsnRead’:
objmmdb1.c:358:12: warning: unused variable ‘isError’ [-Wunused-variable]
  358 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucSetAsnRead’:
objmmdb1.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucAnnotSetAsnRead’:
objmmdb1.c:716:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  716 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucResidueGraphSetAsnRead’:
objmmdb1.c:885:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  885 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucDescrFree’:
objmmdb1.c:1015:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1015 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucDescrAsnRead’:
objmmdb1.c:1059:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1059 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucHistoryAsnRead’:
objmmdb1.c:1270:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1270 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1269 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucReplaceAsnRead’:
objmmdb1.c:1450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1450 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:1449:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1449 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseFree’:
objmmdb1.c:1618:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1618 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucSourceAsnRead’:
objmmdb1.c:1652:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1652 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseAsnRead’:
objmmdb1.c:1753:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1753 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucGraphAsnRead’:
objmmdb1.c:2001:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2001 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiomolDescrFree’:
objmmdb1.c:2139:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2139 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiomolDescrAsnRead’:
objmmdb1.c:2189:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2189 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueGraphAsnRead’:
objmmdb1.c:2446:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2446 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘MoleculeGraphAsnRead’:
objmmdb1.c:2654:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2654 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘InterResidueBondAsnRead’:
objmmdb1.c:2856:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2856 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:2855:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2855 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueAsnRead’:
objmmdb1.c:3037:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3037 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3036:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3036 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueGraphPntrFree’:
objmmdb1.c:3177:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3177 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’:
objmmdb1.c:3212:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3212 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucGraphPntrAsnRead’:
objmmdb1.c:3399:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3399 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3398:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3398 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucResidueGraphSetPntrAsnRead’:
objmmdb1.c:3565:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3565 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3564:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3564 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomAsnRead’:
objmmdb1.c:3732:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3732 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘IntraResidueBondAsnRead’:
objmmdb1.c:3924:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3924 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3923:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3923 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ChiralCenterAsnRead’:
objmmdb1.c:4097:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4097 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:4096:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4096 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomPntrAsnRead’:
objmmdb1.c:4286:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4286 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:4285:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4285 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomPntrSetAsnRead’:
objmmdb1.c:4441:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4441 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:73,
                 from objmmdb1.c:5:
objmmdb1.c: At top level:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objmmdb1.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objmmdb1.c: In function ‘BiostrucIdAsnRead’:
objmmdb1.c:411:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  411 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiostrucDescrAsnRead’:
objmmdb1.c:1126:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1126 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiomolDescrAsnRead’:
objmmdb1.c:2284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2284 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiostrucSourceAsnRead’:
objmmdb1.c:1802:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1802 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c:1752:10: note: ‘choice’ was declared here
 1752 |    Uint1 choice;
      |          ^~~~~~
objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’:
objmmdb1.c:3265:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3265 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb2.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb2.c: In function ‘BiostrucModelAsnRead’:
objmmdb2.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   88 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ModelDescrFree’:
objmmdb2.c:242:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  242 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘ModelDescrAsnRead’:
objmmdb2.c:289:12: warning: unused variable ‘isError’ [-Wunused-variable]
  289 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘ModelSpaceAsnRead’:
objmmdb2.c:512:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  512 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:511:12: warning: unused variable ‘isError’ [-Wunused-variable]
  511 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘Coordinates_coordinatesFree’:
objmmdb2.c:709:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  709 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’:
objmmdb2.c:743:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  743 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘Coordinates_coordinatesAsnRead’:
objmmdb2.c:831:12: warning: unused variable ‘isError’ [-Wunused-variable]
  831 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘ReferenceFrameAsnRead’:
objmmdb2.c:1063:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1063 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:1062:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1062 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘CoordinatesFree’:
objmmdb2.c:1193:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1193 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘CoordinatesAsnRead’:
objmmdb2.c:1231:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘AtomicCoordinatesAsnRead’:
objmmdb2.c:1420:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1420 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘Surface_surfaceFree’:
objmmdb2.c:1640:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1640 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’:
objmmdb2.c:1686:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1686 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:1685:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1685 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘Surface_surfaceAsnRead’:
objmmdb2.c:1766:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1766 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘DensityCoordinatesAsnRead’:
objmmdb2.c:2030:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2030 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ModelSpacePointsAsnRead’:
objmmdb2.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2263 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsFree’:
objmmdb2.c:2404:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2404 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’:
objmmdb2.c:2439:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2439 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘AtomicOccupanciesAsnRead’:
objmmdb2.c:2615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2615 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AlternateConformationIdsAsnRead’:
objmmdb2.c:2760:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2760 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ConformationEnsembleAsnRead’:
objmmdb2.c:2890:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2890 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘IsotropicTemperatureFactorsAsnRead’:
objmmdb2.c:3054:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3054 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AnisotropicTemperatureFactorsAsnRead’:
objmmdb2.c:3221:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3221 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘TMeshAsnRead’:
objmmdb2.c:3426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3426 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘TrianglesAsnRead’:
objmmdb2.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3626 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb2.c:5:
objmmdb2.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb2.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objmmdb2.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objmmdb2.c: In function ‘CoordinatesAsnRead’:
objmmdb2.c:1281:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1281 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘ModelDescrAsnRead’:
objmmdb2.c:366:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  366 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’:
objmmdb2.c:2485:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2485 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’:
objmmdb2.c:877:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  877 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c:830:10: note: ‘choice’ was declared here
  830 |    Uint1 choice;
      |          ^~~~~~
objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’:
objmmdb2.c:1828:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1828 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c:1765:10: note: ‘choice’ was declared here
 1765 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb3.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb3.c: In function ‘BiostrucFeatureSetAsnRead’:
objmmdb3.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphPntrsFree’:
objmmdb3.c:220:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  220 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘AtomPntrsAsnRead’:
objmmdb3.c:443:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  443 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphAlignmentAsnRead’:
objmmdb3.c:626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  626 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphInteractionAsnRead’:
objmmdb3.c:824:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  824 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘SphereAsnRead’:
objmmdb3.c:1024:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1024 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ConeAsnRead’:
objmmdb3.c:1192:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1192 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘CylinderAsnRead’:
objmmdb3.c:1372:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1372 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BrickAsnRead’:
objmmdb3.c:1557:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1557 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘TransformAsnRead’:
objmmdb3.c:1796:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1796 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucFeatureSetDescrFree’:
objmmdb3.c:1921:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1921 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘Location_locationFree’:
objmmdb3.c:2161:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2161 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘BiostrucFeatureAsnRead’:
objmmdb3.c:2206:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2206 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘Property_propertyFree’:
objmmdb3.c:2722:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2722 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘ColorPropAsnRead’:
objmmdb3.c:2798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2798 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘CameraAsnRead’:
objmmdb3.c:2986:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2986 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucScriptAsnRead’:
objmmdb3.c:3171:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3171 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionPntrsAsnRead’:
objmmdb3.c:3330:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3330 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionSimilarityAsnRead’:
objmmdb3.c:3648:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3648 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘OtherFeatureAsnRead’:
objmmdb3.c:3825:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3825 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucMoleculePntrAsnRead’:
objmmdb3.c:3999:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3999 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘MoleculePntrsAsnRead’:
objmmdb3.c:4342:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4342 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ResidueExplicitPntrsAsnRead’:
objmmdb3.c:4505:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4505 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ResidueIntervalPntrAsnRead’:
objmmdb3.c:4673:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4673 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionCoordinatesAsnRead’:
objmmdb3.c:4845:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4845 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionBoundaryFree’:
objmmdb3.c:4981:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4981 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘AlignStatsAsnRead’:
objmmdb3.c:5212:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5212 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RealValueAsnRead’:
objmmdb3.c:5454:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5454 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ModelSpacePointAsnRead’:
objmmdb3.c:5615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5615 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘MoveFree’:
objmmdb3.c:5759:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 5759 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘RotMatrixAsnRead’:
objmmdb3.c:5967:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5967 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘TransMatrixAsnRead’:
objmmdb3.c:6200:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6200 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘GLMatrixAsnRead’:
objmmdb3.c:6379:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6379 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucScriptStepAsnRead’:
objmmdb3.c:6680:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6680 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb3.c:5:
objmmdb3.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb3.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from objmmdb3.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
objmmdb3.c: In function ‘MoveAsnRead’:
objmmdb3.c:5839:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5839 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘ChemGraphPntrsAsnRead’:
objmmdb3.c:307:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  307 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘RegionBoundaryAsnRead’:
objmmdb3.c:5075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5075 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘ResiduePntrsAsnRead’:
objmmdb3.c:4213:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4213 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘RegionPntrsAsnRead’:
objmmdb3.c:3464:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3464 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:3409:10: note: ‘choice’ was declared here
 3409 |    Uint1 choice;
      |          ^~~~~~
objmmdb3.c: In function ‘BiostrucFeatureSetDescrAsnRead’:
objmmdb3.c:2024:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2024 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘BiostrucFeatureAsnRead’:
objmmdb3.c:2691:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2691 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:2626:10: note: ‘choice’ was declared here
 2626 |    Uint1 choice;
      |          ^~~~~~
objmmdb3.c:2370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2370 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:2308:10: note: ‘choice’ was declared here
 2308 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcn3d.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objcn3d.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleDictionaryAsnRead’:
objcn3d.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dUserAnnotationsAsnRead’:
objcn3d.c:251:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  251 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dColorAsnRead’:
objcn3d.c:415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  415 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:414:12: warning: unused variable ‘isError’ [-Wunused-variable]
  414 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dBackboneStyleAsnRead’:
objcn3d.c:605:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  605 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:604:12: warning: unused variable ‘isError’ [-Wunused-variable]
  604 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dGeneralStyleAsnRead’:
objcn3d.c:789:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  789 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:788:12: warning: unused variable ‘isError’ [-Wunused-variable]
  788 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dBackboneLabelStyleAsnRead’:
objcn3d.c:972:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  972 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:971:12: warning: unused variable ‘isError’ [-Wunused-variable]
  971 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleSettingsAsnRead’:
objcn3d.c:1175:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1175 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1174:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1174 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleSettingsSetAsnRead’:
objcn3d.c:1578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1578 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dStyleTableItemAsnRead’:
objcn3d.c:1707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1707 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1706:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1706 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dResidueRangeAsnRead’:
objcn3d.c:1872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1872 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1871:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1871 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dMoleculeLocationAsnRead’:
objcn3d.c:2035:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2035 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dObjectLocationAsnRead’:
objcn3d.c:2198:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2198 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dUserAnnotationAsnRead’:
objcn3d.c:2363:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2363 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dGLMatrixAsnRead’:
objcn3d.c:2555:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2555 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:2554:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2554 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dVectorAsnRead’:
objcn3d.c:2843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2843 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:2842:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2842 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dViewSettingsAsnRead’:
objcn3d.c:3016:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3016 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:3015:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3015 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from ../include/mapcn3d.h:8,
                 from objcn3d.c:5:
objcn3d.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapcn3d.h:8,
                 from objcn3d.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi.c:116:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi.c: In function ‘MakeAModelstruc’:
mmdbapi.c:192:11: warning: unused variable ‘iCount’ [-Wunused-variable]
  192 |     Int4  iCount = 0;
      |           ^~~~~~
mmdbapi.c:189:11: warning: unused variable ‘pdnmsCount’ [-Wunused-variable]
  189 |     PDNMS pdnmsCount = NULL;
      |           ^~~~~~~~~~
mmdbapi.c: In function ‘AddPFBSelect’:
mmdbapi.c:532:11: warning: unused variable ‘pmsdStruc’ [-Wunused-variable]
  532 |     PMSD  pmsdStruc = NULL;
      |           ^~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi1.c: In function ‘FreeAtomicModelAsnLists’:
mmdbapi1.c:1037:21: warning: unused variable ‘pcoThis’ [-Wunused-variable]
 1037 |    CoordinatesPtr   pcoThis = NULL;
      |                     ^~~~~~~
mmdbapi1.c: In function ‘FetchBS’:
mmdbapi1.c:1242:13: warning: unused variable ‘bIsNetwork’ [-Wunused-variable]
 1242 |     Boolean bIsNetwork = FALSE;
      |             ^~~~~~~~~~
mmdbapi1.c: In function ‘FreeSurfaceModelAsnList’:
mmdbapi1.c:1627:16: warning: variable ‘pvnX’ set but not used [-Wunused-but-set-variable]
 1627 |     ValNodePtr pvnX = NULL;
      |                ^~~~
mmdbapi1.c: In function ‘MakeChemGraphNodeList’:
mmdbapi1.c:2343:16: warning: variable ‘pvnThis’ set but not used [-Wunused-but-set-variable]
 2343 |     ValNodePtr pvnThis = NULL;
      |                ^~~~~~~
mmdbapi1.c: In function ‘DoApplyTransform’:
mmdbapi1.c:2573:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2573 |   PMSD pmsdThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c: In function ‘DoReverseTransform’:
mmdbapi1.c:2713:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2713 |   PMSD pmsdThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c: In function ‘InstBSAnnotSet’:
mmdbapi1.c:2860:8: warning: unused variable ‘psfsThis’ [-Wunused-variable]
 2860 |   PSFS psfsThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c:2859:22: warning: unused variable ‘pbsfThis’ [-Wunused-variable]
 2859 |   BiostrucFeaturePtr pbsfThis = NULL;
      |                      ^~~~~~~~
mmdbapi1.c:2855:9: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2855 |   PMSD  pmsdThis = NULL;
      |         ^~~~~~~~
mmdbapi1.c: In function ‘BiosToSeq’:
mmdbapi1.c:2978:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 2978 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c:2967:22: warning: unused variable ‘pbsf’ [-Wunused-variable]
 2967 |   BiostrucFeaturePtr pbsf=NULL;
      |                      ^~~~
mmdbapi1.c: In function ‘fnPBSFtoPSA’:
mmdbapi1.c:3174:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 3174 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’:
mmdbapi1.c:3408:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 3408 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c:3397:22: warning: unused variable ‘pbsf’ [-Wunused-variable]
 3397 |   BiostrucFeaturePtr pbsf=NULL;
      |                      ^~~~
mmdbapi1.c: In function ‘InstallAlignedSlave’:
mmdbapi1.c:3877:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 3877 |    Int2 iTest;
      |         ^~~~~
mmdbapi1.c:3874:9: warning: unused variable ‘psfsThis’ [-Wunused-variable]
 3874 |    PSFS psfsThis = NULL;
      |         ^~~~~~~~
mmdbapi1.c: In function ‘BiostrucAddFeature’:
mmdbapi1.c:4184:11: warning: variable ‘ncbiVast’ set but not used [-Wunused-but-set-variable]
 4184 |   Boolean ncbiVast = FALSE;
      |           ^~~~~~~~
mmdbapi1.c:4182:11: warning: variable ‘pdbFootnote’ set but not used [-Wunused-but-set-variable]
 4182 |   Boolean pdbFootnote  = FALSE;
      |           ^~~~~~~~~~~
mmdbapi1.c:4181:11: warning: variable ‘pdbSite’ set but not used [-Wunused-but-set-variable]
 4181 |   Boolean pdbSite = FALSE;
      |           ^~~~~~~
mmdbapi1.c:4172:15: warning: unused variable ‘pdvnThis’ [-Wunused-variable]
 4172 |   DValNodePtr pdvnThis = NULL;
      |               ^~~~~~~~
mmdbapi1.c: In function ‘BiostrucAsnGet’:
mmdbapi1.c:5289:18: warning: variable ‘aop’ set but not used [-Wunused-but-set-variable]
 5289 |     AsnOptionPtr aop;
      |                  ^~~
mmdbapi1.c: In function ‘BiosToSeq’:
mmdbapi1.c:3083:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3083 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c:3127:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3127 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
mmdbapi1.c: In function ‘fnPBSFtoPSA’:
mmdbapi1.c:3275:52: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3275 |     sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’:
mmdbapi1.c:3515:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3515 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c:3559:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3559 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
mmdbapi1.c: In function ‘InstBSAnnotSet’:
mmdbapi1.c:2885:15: warning: ‘iMMDBId’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2885 |   pdnmsThis = FindLoadedBiostruc(NULL, iMMDBId);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi2.c:159:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi2.c: In function ‘GetAtomLocs’:
mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1471 |      if (pmadThis)
      |         ^
mmdbapi2.c: In function ‘AssignAtomLocId’:
mmdbapi2.c:1537:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1537 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignBackBone’:
mmdbapi2.c:1686:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1686 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignVirtual’:
mmdbapi2.c:1790:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1790 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignIons’:
mmdbapi2.c:1846:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1846 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘MolFromPDBChain’:
mmdbapi2.c:1931:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1931 |     Int2 iTest;
      |          ^~~~~
mmdbapi2.c: In function ‘SeqStringFromMol’:
mmdbapi2.c:1948:9: warning: unused variable ‘iTest’ [-Wunused-variable]
 1948 |    Int4 iTest =0;
      |         ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi3.c:207:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi3.c: In function ‘WritePDBHeader’:
mmdbapi3.c:840:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  840 |     if(org)
      |     ^~
mmdbapi3.c:845:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  845 |         src = orgstring;
      |         ^~~
mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  840 |     if(org)
      |       ^
mmdbapi3.c: In function ‘WritePDBRemarks’:
mmdbapi3.c:1389:8: warning: unused variable ‘len’ [-Wunused-variable]
 1389 |    int len;
      |        ^~~
mmdbapi3.c:1388:9: warning: unused variable ‘pcThis’ [-Wunused-variable]
 1388 |    Char pcThis[81];
      |         ^~~~~~
mmdbapi3.c:1387:21: warning: unused variable ‘pbsdrLast’ [-Wunused-variable]
 1387 |    BiostrucDescrPtr pbsdrLast = NULL;
      |                     ^~~~~~~~~
mmdbapi3.c:1386:21: warning: unused variable ‘pbsdrThis’ [-Wunused-variable]
 1386 |    BiostrucDescrPtr pbsdrThis = NULL;
      |                     ^~~~~~~~~
mmdbapi3.c: In function ‘WritePDBConnect’:
mmdbapi3.c:1610:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1610 |    Int2 iTest;
      |         ^~~~~
mmdbapi3.c: In function ‘WritePDBModelList’:
mmdbapi3.c:1625:10: warning: variable ‘iCount’ set but not used [-Wunused-but-set-variable]
 1625 |     Int4 iCount;
      |          ^~~~~~
mmdbapi3.c: In function ‘WriteKinAtom’:
mmdbapi3.c:2287:11: warning: unused variable ‘pcElName’ [-Wunused-variable]
 2287 |   CharPtr pcElName = NULL;
      |           ^~~~~~~~
mmdbapi3.c: In function ‘WriteFASTAMolecule’:
mmdbapi3.c:3537:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 3537 |    Int4 iTest =0;
      |         ^~~~~
mmdbapi3.c: In function ‘WriteKinAtom’:
mmdbapi3.c:2314:12: warning: ‘iTemp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2314 |         if (iTemp < TempsKine[(iIndex-1)]) return; /* too low */
      |            ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi4.c:106:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi4.c: In function ‘RefreshSurface’:
mmdbapi4.c:147:10: warning: unused variable ‘iVal’ [-Wunused-variable]
  147 |     Int4 iVal = 0;
      |          ^~~~
mmdbapi4.c: In function ‘FreeCoordinatesAsnLists’:
mmdbapi4.c:335:28: warning: variable ‘pdcThis’ set but not used [-Wunused-but-set-variable]
  335 |     DensityCoordinatesPtr  pdcThis = NULL;
      |                            ^~~~~~~
mmdbapi4.c: In function ‘FreeRedundantAsn’:
mmdbapi4.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
mmdbapi4.c:370:11: warning: unused variable ‘pdnmmThis’ [-Wunused-variable]
  370 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
mmdbapi4.c:367:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable]
  367 |     BiostrucModelPtr pbsmThis = NULL;
      |                      ^~~~~~~~
mmdbapi4.c: In function ‘RefreshModelAsnMem’:
mmdbapi4.c:474:13: warning: unused variable ‘iCoordSets’ [-Wunused-variable]
  474 |     Int4    iCoordSets = 0;
      |             ^~~~~~~~~~
mmdbapi4.c:465:20: warning: unused variable ‘pappThis’ [-Wunused-variable]
  465 |     AtomPntrsPtr   pappThis = NULL;
      |                    ^~~~~~~~
mmdbapi4.c:464:27: warning: unused variable ‘pmspThis’ [-Wunused-variable]
  464 |     ModelSpacePointsPtr   pmspThis = NULL;
      |                           ^~~~~~~~
mmdbapi4.c:463:28: warning: unused variable ‘pocThis’ [-Wunused-variable]
  463 |     AtomicOccupanciesPtr   pocThis = NULL;
      |                            ^~~~~~~
mmdbapi4.c:458:34: warning: unused variable ‘paciThis’ [-Wunused-variable]
  458 |     AlternateConformationIdsPtr  paciThis = NULL;
      |                                  ^~~~~~~~
mmdbapi4.c: In function ‘RebuildChemGraphAsn’:
mmdbapi4.c:931:15: warning: unused variable ‘bOK’ [-Wunused-variable]
  931 |     Boolean   bOK = TRUE;
      |               ^~~
mmdbapi4.c: In function ‘WriteASNChemGraphOnly’:
mmdbapi4.c:1192:10: warning: unused variable ‘iHash’ [-Wunused-variable]
 1192 |     Int4 iHash = 0;
      |          ^~~~~
mmdbapi4.c: In function ‘FreeSingleModel’:
mmdbapi4.c:1336:11: warning: unused variable ‘pdnml’ [-Wunused-variable]
 1336 |     PDNML pdnml = NULL;
      |           ^~~~~
mmdbapi4.c:1332:22: warning: unused variable ‘pbsmTemp’ [-Wunused-variable]
 1332 |     BiostrucModelPtr pbsmTemp = NULL;
      |                      ^~~~~~~~
mmdbapi4.c: In function ‘WriteAsnModelList’:
mmdbapi4.c:1505:14: warning: unused variable ‘paioAIP’ [-Wunused-variable]
 1505 |     AsnIoPtr paioAIP = NULL;
      |              ^~~~~~~
mmdbapi4.c:1502:11: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1502 |     PMLD  pmldThis = NULL;
      |           ^~~~~~~~
mmdbapi4.c:1498:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1498 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
mmdbapi4.c:1496:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable]
 1496 |     BiostrucModelPtr pbsmThis = NULL;
      |                      ^~~~~~~~
mmdbapi4.c:1495:17: warning: unused variable ‘pBSThis’ [-Wunused-variable]
 1495 |     BiostrucPtr pBSThis = NULL;
      |                 ^~~~~~~
mmdbapi4.c:1494:13: warning: unused variable ‘bFirst’ [-Wunused-variable]
 1494 |     Boolean bFirst = TRUE;
      |             ^~~~~~
mmdbapi4.c:1493:10: warning: unused variable ‘iTest’ [-Wunused-variable]
 1493 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’:
mmdbapi4.c:1741:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 1741 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi4.c: In function ‘WriteAsnModelList’:
mmdbapi4.c:1632:13: warning: ‘bRet’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1632 |      return bRet;
      |             ^~~~
mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’:
mmdbapi4.c:1828:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 1828 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi4.c:106:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi4.c:1872:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1872 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbentr.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vastsubs.c
vastsubs.c: In function ‘LoadSubsetTable’:
vastsubs.c:212:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  212 |  fscanf(fd, "%d", &ndoms);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:239:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  239 |  fscanf(fd, "%d", &nsubs);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:258:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  258 |   fscanf(fd, "%d", &j);
      |   ^~~~~~~~~~~~~~~~~~~~
vastsubs.c:287:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  287 |   fscanf(fd, "%8c", domid);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:296:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  296 |   fscanf(fd, "%d", &n);
      |   ^~~~~~~~~~~~~~~~~~~~
vastsubs.c:302:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  302 |    fscanf(fd, "%d %d %d", &subset[j], &grps[j], &ranks[j]);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:304:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  304 |   fscanf(fd, "\n");
      |   ^~~~~~~~~~~~~~~~
vastsubs.c:275:31: warning: ‘len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  275 |     SubsetArray[strindex + len++] = ch;
      |                            ~~~^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prunebsc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/prunebsc.h:10,
                 from prunebsc.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prunebsc.c: In function ‘PruneFeatureSet’:
prunebsc.c:220:22: warning: variable ‘bsfpDie’ set but not used [-Wunused-but-set-variable]
  220 |   BiostrucFeaturePtr bsfpDie, bsfp, bsfpnew = NULL;
      |                      ^~~~~~~
prunebsc.c: In function ‘PruneModel’:
prunebsc.c:272:30: warning: variable ‘mcsDie’ set but not used [-Wunused-but-set-variable]
  272 |   ModelCoordinateSetPtr mcs, mcsDie, mcsnew = NULL;
      |                              ^~~~~~
prunebsc.c: In function ‘PruneBiostruc’:
prunebsc.c:559:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  559 |     if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
      |         ^~~
prunebsc.c:574:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  574 |     if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
      |         ^~~
prunebsc.c:663:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  663 |     if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
      |         ^~~
In file included from ../include/ncbi.h:62,
                 from ../include/prunebsc.h:10,
                 from prunebsc.c:34:
../include/ncbistr.h:339:20: warning: ‘feature_name’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  339 | #define StringICmp Nlm_StringICmp
      |                    ^~~~~~~~~~~~~~
prunebsc.c:522:25: note: ‘feature_name’ was declared here
  522 |   CharPtr chnid, hetid, feature_name;
      |                         ^~~~~~~~~~~~
prunebsc.c:649:23: warning: ‘pirbnew’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  649 |         pirbnew->next = pirb;
      |         ~~~~~~~~~~~~~~^~~~~~
prunebsc.c:695:18: warning: ‘mol_id’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  695 |       bsmpHead = PruneModel(bsmp, pvnIds, mol_id);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
prunebsc.c:591:26: warning: ‘currenthet’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  591 |         currenthet->next = het;
      |         ~~~~~~~~~~~~~~~~~^~~~~
prunebsc.c:562:9: warning: ‘chnid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  562 |     if (*chnid == *chain)
      |         ^~~~~~
prunebsc.c:182:7: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  182 |       switch(mtype)
      |       ^~~~~~
prunebsc.c:173:8: note: ‘mtype’ was declared here
  173 |   Int4 mtype, molecule_id;
      |        ^~~~~
prunebsc.c:102:8: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  102 |   Int4 mtype;
      |        ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcdd.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objcdd.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objcdd.c: In function ‘CddIdFree’:
objcdd.c:53:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   53 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘CddIdAsnRead’:
objcdd.c:85:12: warning: unused variable ‘isError’ [-Wunused-variable]
   85 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddIdSetAsnRead’:
objcdd.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  248 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:245:12: warning: unused variable ‘av’ [-Wunused-variable]
  245 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddAsnRead’:
objcdd.c:402:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  402 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddSetAsnRead’:
objcdd.c:798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  798 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:795:12: warning: unused variable ‘av’ [-Wunused-variable]
  795 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddTreeAsnRead’:
objcdd.c:935:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  935 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:934:12: warning: unused variable ‘isError’ [-Wunused-variable]
  934 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddTreeSetAsnRead’:
objcdd.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1147 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1144:12: warning: unused variable ‘av’ [-Wunused-variable]
 1144 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddPrefNodesAsnRead’:
objcdd.c:1281:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1281 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1280:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1280 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddProjectAsnRead’:
objcdd.c:1478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1478 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddOrgRefAsnRead’:
objcdd.c:1668:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1668 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1667:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1667 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddOrgRefSetAsnRead’:
objcdd.c:1838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1838 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1835:12: warning: unused variable ‘av’ [-Wunused-variable]
 1835 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddPrefNodeDescrFree’:
objcdd.c:1932:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1932 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘CddPrefNodeDescrAsnRead’:
objcdd.c:1967:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1967 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddPrefNodeDescrSetAsnRead’:
objcdd.c:2130:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2130 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2127:12: warning: unused variable ‘av’ [-Wunused-variable]
 2127 |    DataVal av;
      |            ^~
objcdd.c: In function ‘GlobalIdAsnRead’:
objcdd.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2263 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2262:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2262 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddRepeatAsnRead’:
objcdd.c:2450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2450 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2449:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2449 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddBookRefAsnRead’:
objcdd.c:2627:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2627 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2626:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2626 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddDescrSetAsnRead’:
objcdd.c:3183:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3183 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:3180:12: warning: unused variable ‘av’ [-Wunused-variable]
 3180 |    DataVal av;
      |            ^~
objcdd.c: In function ‘MatrixAsnRead’:
objcdd.c:3315:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3315 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘TriangleAsnRead’:
objcdd.c:3504:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3504 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘UpdateCommentFree’:
objcdd.c:3641:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3641 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘UpdateCommentAsnRead’:
objcdd.c:3685:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3685 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘UpdateAlignAsnRead’:
objcdd.c:3889:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3889 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘RejectIdAsnRead’:
objcdd.c:4064:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4064 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘FeatureEvidenceFree’:
objcdd.c:4188:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4188 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘FeatureEvidenceAsnRead’:
objcdd.c:4232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘AlignAnnotAsnRead’:
objcdd.c:4437:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4437 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘AlignAnnotSetAsnRead’:
objcdd.c:4606:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4606 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4603:12: warning: unused variable ‘av’ [-Wunused-variable]
 4603 |    DataVal av;
      |            ^~
objcdd.c: In function ‘DomainParentAsnRead’:
objcdd.c:4738:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4738 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4737:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4737 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘SequenceTreeAsnRead’:
objcdd.c:4919:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4919 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4918:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4918 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘AlgorithmTypeAsnRead’:
objcdd.c:5107:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5107 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5106:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5106 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘SeqTreeNodeAsnRead’:
objcdd.c:5410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5410 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5409:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5409 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘Children_footprintAsnRead’:
objcdd.c:5595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5595 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5594:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5594 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘NodeAnnotationAsnRead’:
objcdd.c:5887:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5887 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5886:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5886 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddViewerRectAsnRead’:
objcdd.c:6053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6053 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:6052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddViewerAsnRead’:
objcdd.c:6235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6235 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddScriptAsnRead’:
objcdd.c:6410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6410 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:6409:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6409 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from objcdd.c:6:
objcdd.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from objcdd.c:6:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from objcdd.c:7:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objcdd.c: In function ‘CddIdAsnRead’:
objcdd.c:134:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  134 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘CddPrefNodeDescrAsnRead’:
objcdd.c:2016:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2016 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘UpdateCommentAsnRead’:
objcdd.c:3746:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3746 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘FeatureEvidenceAsnRead’:
objcdd.c:4293:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4293 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘CddDescrAsnRead’:
objcdd.c:3007:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3007 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘SeqTreeNodeAsnRead’:
objcdd.c:5561:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5561 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c:5510:10: note: ‘choice’ was declared here
 5510 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddutil.c:336:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cddutil.c: In function ‘CddGetPmIds’:
cddutil.c:649:17: warning: unused variable ‘bRefOpen’ [-Wunused-variable]
  649 |   Boolean       bRefOpen = FALSE;
      |                 ^~~~~~~~
cddutil.c: In function ‘CddGetAnnotNames’:
cddutil.c:807:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  807 |   ValNodePtr      vnp, vnpHead = NULL;
      |                   ^~~
cddutil.c: In function ‘CddCheckForRepeats’:
cddutil.c:1034:7: warning: the address of ‘CddHasConsensus’ will always evaluate as ‘true’ [-Waddress]
 1034 |   if (!CddHasConsensus) return FALSE;
      |       ^
cddutil.c:1013:23: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 1013 |   Int2                iStatus;
      |                       ^~~~~~~
cddutil.c: In function ‘CddMSLDenDiagToMSLDenSeg’:
cddutil.c:1663:30: warning: variable ‘lasts’ set but not used [-Wunused-but-set-variable]
 1663 |   Int4                lastm, lasts;
      |                              ^~~~~
cddutil.c:1663:23: warning: variable ‘lastm’ set but not used [-Wunused-but-set-variable]
 1663 |   Int4                lastm, lasts;
      |                       ^~~~~
cddutil.c: In function ‘SeqAlignInform’:
cddutil.c:1938:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 1938 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddAlignInform’:
cddutil.c:2125:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2125 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddPssmInform’:
cddutil.c:2248:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2248 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddPosFreqInform’:
cddutil.c:2306:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2306 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddDenDiagCposComputation’:
cddutil.c:2368:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 2368 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c:2365:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2365 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddCposComputation’:
cddutil.c:2571:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 2571 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c:2568:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2568 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddRetrieveBioseqById’:
cddutil.c:3379:15: warning: unused variable ‘retcode’ [-Wunused-variable]
 3379 |   Int2        retcode = 1;
      |               ^~~~~~~
cddutil.c:3377:15: warning: unused variable ‘uid’ [-Wunused-variable]
 3377 |   Int4        uid = 0;
      |               ^~~
cddutil.c: In function ‘CddCalculateTriangle’:
cddutil.c:3534:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3534 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |    ^~
cddutil.c:3534:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3534 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |                               ^~
cddutil.c: In function ‘CddCalculateQuerySim’:
cddutil.c:3653:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3653 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |    ^~
cddutil.c:3653:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3653 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |                               ^~
cddutil.c: In function ‘CddConsensus’:
cddutil.c:3853:49: warning: variable ‘m_end’ set but not used [-Wunused-but-set-variable]
 3853 |   Int4                m_last, m_frst, s_insert, m_end;
      |                                                 ^~~~~
cddutil.c: In function ‘CddCposCompPart1’:
cddutil.c:4247:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 4247 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddGetNewIndexForThreading’:
cddutil.c:4392:14: warning: unused variable ‘Index’ [-Wunused-variable]
 4392 |     Int4  i, Index=0;
      |              ^~~~~
cddutil.c: In function ‘CddCposComp’:
cddutil.c:4474:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 4474 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c: In function ‘CddDenDiagCposComp2KBP’:
cddutil.c:4745:59: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 4745 |   ValNodePtr              ColumnHead, LetterHead, newRow, RowHead, newLetter;
      |                                                           ^~~~~~~
cddutil.c: In function ‘CddDumpTaxLinks’:
cddutil.c:5727:16: warning: unused variable ‘txid’ [-Wunused-variable]
 5727 |   Int4         txid = 0, gi = 0;
      |                ^~~~
cddutil.c: At top level:
cddutil.c:6267:1: warning: "/*" within comment [-Wcomment]
 6267 | /*---------------------------------------------------------------------------*/
      |  
In file included from ../include/cddutil.h:205,
                 from cddutil.c:353:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from cddutil.c:353:
../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  589 | static  SeqIdPtr        CddFindSeqIdInSeqLoc(SeqLocPtr location);
      |                         ^~~~~~~~~~~~~~~~~~~~
cddutil.c:4661:16: warning: ‘CddtakeMatrixCheckpoint’ defined but not used [-Wunused-function]
 4661 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
      |                ^~~~~~~~~~~~~~~~~~~~~~~
In file included from cddutil.c:349:
../include/cdd.h:343:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  343 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/cdd.h:342:19: warning: ‘at’ defined but not used [-Wunused-variable]
  342 | static AsnTypePtr at = atx;
      |                   ^~
../include/cdd.h:341:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  341 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/cdd.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "cdd.h24";
      |               ^~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from cddutil.c:336:
In function ‘strncpy’,
    inlined from ‘CddRegularizeFileName’ at cddutil.c:984:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from cddutil.c:336:
cddutil.c: In function ‘CddRegularizeFileName’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
cddutil.c:984:26: note: in expansion of macro ‘Nlm_StrLen’
  984 |     Nlm_StrNCpy(cAcc,cIn,Nlm_StrLen(cIn)-Nlm_StrLen(cEx));
      |                          ^~~~~~~~~~
cddutil.c: In function ‘CddCopyMSLDenDiag’:
cddutil.c:3015:25: warning: ‘ddpTail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3015 |           ddpTail->next = ddpNew;
      |           ~~~~~~~~~~~~~~^~~~~~~~
In file included from ../include/ncbi.h:59,
                 from cddutil.c:336:
cddutil.c: In function ‘CddCalculateTriangle’:
../include/ncbimem.h:232:23: warning: ‘buffer1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
cddutil.c:3415:19: note: ‘buffer1’ was declared here
 3415 |    Uint1Ptr       buffer1, buffer2, buffer3;
      |                   ^~~~~~~
cddutil.c:3524:22: warning: ‘pscTail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3524 |        pscTail->next = psc; pscTail = psc; psc = NULL;
      |        ~~~~~~~~~~~~~~^~~~~
cddutil.c: In function ‘CddDenDiagCposComp2KBP’:
cddutil.c:4974:11: warning: ‘pssm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4974 |     return(pssm);
      |           ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddposutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddposutil.c:119:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cddposutil.c: In function ‘CddfindThreshSequences’:
cddposutil.c:359:15: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable]
  359 |   SeqIdPtr    thisId;         /* Ids of target sequences in current SeqAlign */
      |               ^~~~~~
cddposutil.c: In function ‘CddfindDenseDiagThreshSequences’:
cddposutil.c:386:16: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable]
  386 |   SeqIdPtr     thisId;        /* Ids of target sequences in current SeqAlign */
      |                ^~~~~~
cddposutil.c: In function ‘CddposFreqsToMatrix’:
cddposutil.c:1038:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4)) + (sizetype)((unsigned int)a * 4))’ may be undefined [-Wsequence-point]
 1038 |      posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
cddposutil.c: In function ‘CddposDenseDiagDemographics’:
cddposutil.c:1094:17: warning: unused variable ‘is_new_id’ [-Wunused-variable]
 1094 |    Boolean      is_new_id = FALSE;
      |                 ^~~~~~~~~
cddposutil.c:1093:17: warning: unused variable ‘segIndex’ [-Wunused-variable]
 1093 |    Int4         segIndex;                   /*Index for which piece we are at*/
      |                 ^~~~~~~~
cddposutil.c:1092:25: warning: variable ‘startS’ set but not used [-Wunused-but-set-variable]
 1092 |    Int4         startQ, startS;    /*Indices into array of starting positions*/
      |                         ^~~~~~
cddposutil.c:1092:17: warning: variable ‘startQ’ set but not used [-Wunused-but-set-variable]
 1092 |    Int4         startQ, startS;    /*Indices into array of starting positions*/
      |                 ^~~~~~
cddposutil.c:1091:17: warning: unused variable ‘curId’ [-Wunused-variable]
 1091 |    SeqIdPtr     curId; /*Used to compare seq. coming from different SeqAligns*/
      |                 ^~~~~
cddposutil.c: In function ‘CddSetUpSearchInternalByLoc’:
cddposutil.c:1246:39: warning: unused variable ‘last_length_adjustment’ [-Wunused-variable]
 1246 |   index, length, length_adjustment=0, last_length_adjustment, min_query_length;
      |                                       ^~~~~~~~~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddSetUpSearchWithReadDb’:
cddposutil.c:2040:43: warning: variable ‘final_db_seq’ set but not used [-Wunused-but-set-variable]
 2040 |       Int4        final_virtual_db_seq=0, final_db_seq=0;
      |                                           ^~~~~~~~~~~~
cddposutil.c:2006:28: warning: unused variable ‘virtual_oid_bit’ [-Wunused-variable]
 2006 |  Uint4            oid_bit, virtual_oid_bit;
      |                            ^~~~~~~~~~~~~~~
cddposutil.c:2006:19: warning: unused variable ‘oid_bit’ [-Wunused-variable]
 2006 |  Uint4            oid_bit, virtual_oid_bit;
      |                   ^~~~~~~
cddposutil.c:2005:30: warning: unused variable ‘virtual_mask_index’ [-Wunused-variable]
 2005 |  Int4            mask_index, virtual_mask_index;
      |                              ^~~~~~~~~~~~~~~~~~
cddposutil.c:2005:18: warning: unused variable ‘mask_index’ [-Wunused-variable]
 2005 |  Int4            mask_index, virtual_mask_index;
      |                  ^~~~~~~~~~
cddposutil.c:2004:19: warning: unused variable ‘alias_oidlist’ [-Wunused-variable]
 2004 |  OIDListPtr       alias_oidlist;
      |                   ^~~~~~~~~~~~~
cddposutil.c:2003:19: warning: unused variable ‘use_private_gilist’ [-Wunused-variable]
 2003 |  Boolean          use_private_gilist = FALSE;
      |                   ^~~~~~~~~~~~~~~~~~
cddposutil.c:2000:20: warning: unused variable ‘vnp’ [-Wunused-variable]
 2000 |   ValNodePtr       vnp;
      |                    ^~~
cddposutil.c: In function ‘CddposReadAlignment’:
cddposutil.c:2226:16: warning: variable ‘alignPos’ set but not used [-Wunused-but-set-variable]
 2226 |   Int4         alignPos, queryOffset, subjectOffset, matchLength;
      |                ^~~~~~~~
In file included from ../include/cddutil.h:205,
                 from cddposutil.c:131:
cddposutil.c: At top level:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from cddposutil.c:131:
../include/cddutil.h:507:27: warning: ‘CddReadBlastOptions’ declared ‘static’ but never defined [-Wunused-function]
  507 | static PGPBlastOptionsPtr CddReadBlastOptions(BioseqPtr bsp, Int4 iPseudo, CharPtr matrix_name);
      |                           ^~~~~~~~~~~~~~~~~~~
../include/cddutil.h:512:13: warning: ‘BlastKarlinBlkCopy’ declared ‘static’ but never defined [-Wunused-function]
  512 | static void BlastKarlinBlkCopy(BLAST_KarlinBlkPtr kbp_in,BLAST_KarlinBlkPtr kbp_out);
      |             ^~~~~~~~~~~~~~~~~~
../include/cddutil.h:516:13: warning: ‘CddputMatrixKbp’ declared ‘static’ but never defined [-Wunused-function]
  516 | static void CddputMatrixKbp(FILE *checkFile, BLAST_KarlinBlkPtr kbp,
      |             ^~~~~~~~~~~~~~~
../include/cddutil.h:518:13: warning: ‘CddputMatrixMatrix’ declared ‘static’ but never defined [-Wunused-function]
  518 | static void CddputMatrixMatrix(FILE *checkFile,
      |             ^~~~~~~~~~~~~~~~~~
../include/cddutil.h:522:16: warning: ‘CddtakeMatrixCheckpoint’ declared ‘static’ but never defined [-Wunused-function]
  522 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
      |                ^~~~~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  589 | static  SeqIdPtr        CddFindSeqIdInSeqLoc(SeqLocPtr location);
      |                         ^~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:591:25: warning: ‘CddRelocateSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  591 | static  void            CddRelocateSeqLoc(SeqLocPtr location, SeqIdPtr sip, Int4 *ali);
      |                         ^~~~~~~~~~~~~~~~~
../include/cddutil.h:592:25: warning: ‘CddSeqLocInExpAlign’ declared ‘static’ but never defined [-Wunused-function]
  592 | static  Int4            CddSeqLocInExpAlign(SeqLocPtr location, CddExpAlignPtr eap);
      |                         ^~~~~~~~~~~~~~~~~~~
../include/cddutil.h:593:25: warning: ‘CddFindSeqIdInAlignAnnot’ declared ‘static’ but never defined [-Wunused-function]
  593 | static  SeqIdPtr        CddFindSeqIdInAlignAnnot(AlignAnnotPtr oldannot);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:623:24: warning: ‘HitYet’ declared ‘static’ but never defined [-Wunused-function]
  623 | static Boolean         HitYet(Int4Ptr retlist, Int4 index, Int4 i);
      |                        ^~~~~~
../include/cddutil.h:649:16: warning: ‘CddFixForXML’ declared ‘static’ but never defined [-Wunused-function]
  649 | static CharPtr CddFixForXML(CharPtr pc);
      |                ^~~~~~~~~~~~
cddposutil.c:971:13: warning: ‘CddfreePosFreqs’ defined but not used [-Wunused-function]
  971 | static void CddfreePosFreqs(Nlm_FloatHi ** posFreqs, Int4 length)
      |             ^~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddposComputeSequenceWeights’:
cddposutil.c:840:35: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  840 |       posSearch->posSigma[qplace] = intervalSigma;
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
cddposutil.c:829:10: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  829 |       if (Sigma > 0) {
      |          ^
cddposutil.c: In function ‘CddposDemographics’:
cddposutil.c:1199:24: warning: ‘retrievalOffset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1199 |          subjectOffset = curSegs->starts[startS] - retrievalOffset;
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddSetUpSearchWithReadDb’:
cddposutil.c:1740:48: warning: ‘min_query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1740 |         if( 0 != BlastComputeLengthAdjustment(1/min_query_length,
      |                                               ~^~~~~~~~~~~~~~~~~
cddposutil.c:1246:63: note: ‘min_query_length’ was declared here
 1246 |   index, length, length_adjustment=0, last_length_adjustment, min_query_length;
      |                                                               ^~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmime.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmime.c:76:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmime.c: In function ‘NcbiMimeAsn1Free’:
objmime.c:126:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  126 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘NcbiMimeAsn1AsnRead’:
objmime.c:173:12: warning: unused variable ‘isError’ [-Wunused-variable]
  173 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘Data_dataFree’:
objmime.c:382:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  382 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘EntrezGeneralAsnRead’:
objmime.c:428:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  428 |    AsnReadFunc func;
      |                ^~~~
objmime.c:427:12: warning: unused variable ‘isError’ [-Wunused-variable]
  427 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘Data_dataAsnRead’:
objmime.c:522:12: warning: unused variable ‘isError’ [-Wunused-variable]
  522 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘BiostrucAlignAsnRead’:
objmime.c:801:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  801 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucAlignSeqAsnRead’:
objmime.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1027 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucSeqAsnRead’:
objmime.c:1220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1220 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucSeqsAsnRead’:
objmime.c:1415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1415 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘SeqAlignData_seq_align_dataFree’:
objmime.c:1613:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1613 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’:
objmime.c:1647:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1647 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘SeqAlignData_seq_align_dataAsnRead’:
objmime.c:1734:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1734 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘BundleSeqsAlignsAsnRead’:
objmime.c:1973:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1973 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/mapmime.h:4,
                 from objmime.c:81:
objmime.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapmime.h:4,
                 from objmime.c:81:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapmime.h:6,
                 from objmime.c:81:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
objmime.c: In function ‘NcbiMimeAsn1AsnRead’:
objmime.c:235:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c: In function ‘EntrezGeneralAsnRead’:
objmime.c:584:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  584 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c:521:10: note: ‘choice’ was declared here
  521 |    Uint1 choice;
      |          ^~~~~~
objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’:
objmime.c:1780:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1780 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c:1733:10: note: ‘choice’ was declared here
 1733 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF strucapi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from strucapi.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdalgs.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdatd.c
thrdatd.c: In function ‘atd’:
thrdatd.c:859:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  859 | for(i=0;i<nsc;i++) printf("%d ",sai->al[i]); printf("sai->al\n");
      | ^~~
thrdatd.c:859:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  859 | for(i=0;i<nsc;i++) printf("%d ",sai->al[i]); printf("sai->al\n");
      |                                              ^~~~~~
thrdatd.c:860:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  860 | for(i=0;i<sai->nmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n");
      | ^~~
thrdatd.c:860:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  860 | for(i=0;i<sai->nmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n");
      |                                                   ^~~~~~
thrdatd.c:862:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  862 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      | ^~~
thrdatd.c:862:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  862 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      |                                              ^~~~~~
thrdatd.c:863:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  863 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      | ^~~
thrdatd.c:863:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  863 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      |                                              ^~~~~~
thrdatd.c:864:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  864 | for(i=0;i<sli->nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      | ^~~
thrdatd.c:864:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  864 | for(i=0;i<sli->nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      |                                                   ^~~~~~
thrdatd.c:865:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  865 | for(i=0;i<sli->nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      | ^~~
thrdatd.c:865:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  865 | for(i=0;i<sli->nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      |                                                   ^~~~~~
thrdatd.c:1014:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1014 | for(k=0;k<nsc;k++) printf("%d ",sai->al[k]); printf("sai->al\n");
      | ^~~
thrdatd.c:1014:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1014 | for(k=0;k<nsc;k++) printf("%d ",sai->al[k]); printf("sai->al\n");
      |                                              ^~~~~~
thrdatd.c:1015:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1015 | for(k=0;k<nmt;k++) printf("%d ",sai->sq[k]); printf("sai->sq\n");
      | ^~~
thrdatd.c:1015:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1015 | for(k=0;k<nmt;k++) printf("%d ",sai->sq[k]); printf("sai->sq\n");
      |                                              ^~~~~~
thrdatd.c:1017:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1017 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      | ^~~
thrdatd.c:1017:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1017 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      |                                              ^~~~~~
thrdatd.c:1018:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1018 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      | ^~~
thrdatd.c:1018:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1018 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      |                                              ^~~~~~
thrdatd.c:1019:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1019 | for(i=0;i<nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      | ^~~
thrdatd.c:1019:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1019 | for(i=0;i<nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      |                                              ^~~~~~
thrdatd.c:1020:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1020 | for(i=0;i<nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      | ^~~
thrdatd.c:1020:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1020 | for(i=0;i<nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      |                                              ^~~~~~
thrdatd.c:1244:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1244 | for(i=0;i<nsc;i++) free(spe->gss[i]); free(spe->gss);
      | ^~~
thrdatd.c:1244:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1244 | for(i=0;i<nsc;i++) free(spe->gss[i]); free(spe->gss);
      |                                       ^~~~
thrdatd.c:1251:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1251 | for(i=0; i<ndi; i++) free(spn->nrr[i]); free(spn->nrr);
      | ^~~
thrdatd.c:1251:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1251 | for(i=0; i<ndi; i++) free(spn->nrr[i]); free(spn->nrr);
      |                                         ^~~~
thrdatd.c:1255:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1255 | for(i=0; i<ndi; i++) free(spn->nrp[i]); free(spn->nrp);
      | ^~~
thrdatd.c:1255:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1255 | for(i=0; i<ndi; i++) free(spn->nrp[i]); free(spn->nrp);
      |                                         ^~~~
thrdatd.c:1259:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1259 | for(i=0; i<ndi; i++) free(spn->nrf[i]); free(spn->nrf);
      | ^~~
thrdatd.c:1259:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1259 | for(i=0; i<ndi; i++) free(spn->nrf[i]); free(spn->nrf);
      |                                         ^~~~
thrdatd.c:1260:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1260 | for(i=0; i<ndi; i++) free(spn->frf[i]); free(spn->frf);
      | ^~~
thrdatd.c:1260:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1260 | for(i=0; i<ndi; i++) free(spn->frf[i]); free(spn->frf);
      |                                         ^~~~
thrdatd.c:201:8: warning: variable ‘hh’ set but not used [-Wunused-but-set-variable]
  201 |  float hh;
      |        ^~
thrdatd.c:198:6: warning: variable ‘rf’ set but not used [-Wunused-but-set-variable]
  198 |  int rf;  /* Reference position for a core element              */
      |      ^~
thrdatd.c:188:14: warning: unused variable ‘m’ [-Wunused-variable]
  188 |  int i,j,k,l,m,n; /* Counters                                           */
      |              ^
thrdatd.c:188:12: warning: unused variable ‘l’ [-Wunused-variable]
  188 |  int i,j,k,l,m,n; /* Counters                                           */
      |            ^
thrdatd.c:171:6: warning: variable ‘nrp’ set but not used [-Wunused-but-set-variable]
  171 |  int nrp;  /* Number of residue-peptide contacts in motif        */
      |      ^~~
thrdatd.c:170:6: warning: variable ‘nrr’ set but not used [-Wunused-but-set-variable]
  170 |  int nrr;  /* Number of residue-residue contacts in motif        */
      |      ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c
thrdbwfi.c: In function ‘bwfi’:
thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
  114 | }
      | ^
thrdbwfi.c:64:5: warning: ‘nt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   64 | int nt;  /* Number of threads within specified ensemble cutoff */
      |     ^~
thrdbwfi.c:89:20: warning: ‘nz’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   89 | cw=0.; ct=ttb->mx; for(i=0; i<=nz; i++) {
      |                    ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcpal.c
thrdcpal.c: In function ‘cpal’:
thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type]
  210 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcpll.c
thrdcpll.c: In function ‘cpll’:
thrdcpll.c:74:5: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   74 | int nrt;  /* Number of residue types */
      |     ^~~
thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type]
  229 | }
      | ^
thrdcpll.c:220:15: warning: ‘r2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  220 |   cl->rf.t2[k]=r2;
      |   ~~~~~~~~~~~~^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcprl.c
thrdcprl.c: In function ‘cprl’:
thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type]
  261 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcxei.c
thrdcxei.c: In function ‘cxei’:
thrdcxei.c:94:15: warning: variable ‘ms’ set but not used [-Wunused-but-set-variable]
   94 | int     ntot, ms;
      |               ^~
thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type]
  205 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrddgri.c
thrddgri.c: In function ‘g’:
thrddgri.c:72:5: warning: variable ‘s0’ set but not used [-Wunused-but-set-variable]
   72 | int s0;
      |     ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsal0.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsalr.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsalu.c
thrdsalu.c: In function ‘salu’:
thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type]
   83 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c
thrdsgoi.c: In function ‘sgoi’:
thrdsgoi.c:98:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   98 |   for(i=0; i<nsc; i++)  si[i]=i;  break; }
      |   ^~~
thrdsgoi.c:98:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   98 |   for(i=0; i<nsc; i++)  si[i]=i;  break; }
      |                                   ^~~~~
thrdsgoi.c:115:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  115 |   for(i=0; i<nsc; i++) to[i]=0; break; }
      |   ^~~
thrdsgoi.c:115:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  115 |   for(i=0; i<nsc; i++) to[i]=0; break; }
      |                                 ^~~~~
thrdsgoi.c:119:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  119 |   for(i=0; i<nsc; i++) to[i]=1; break; }
      |   ^~~
thrdsgoi.c:119:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  119 |   for(i=0; i<nsc; i++) to[i]=1; break; }
      |                                 ^~~~~
thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type]
  123 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslo0.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslor.c
thrdslor.c: In function ‘slor’:
thrdslor.c:90:6: warning: ‘mp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   90 | int *mp;  /* Motif-derived loop length limits */
      |      ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslou.c
thrdslou.c: In function ‘slou’:
thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
  114 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspci.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspea.c
thrdspea.c: In function ‘spea’:
thrdspea.c:91:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   91 | int     nrt;            /* Number of residue types in potential */
      |         ^~~
thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type]
  189 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspel.c
thrdspel.c: In function ‘spel’:
thrdspel.c:88:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   88 | int     nrt;            /* Number of residue types in potential */
      |         ^~~
thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type]
  188 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspni.c
thrdspni.c: In function ‘spni’:
thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type]
  238 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdttb0.c
thrdttb0.c: In function ‘ttb0’:
thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type]
   75 | }
      | ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdttbi.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdzsc.c
thrdzsc.c: In function ‘zsc’:
thrdzsc.c:107:7: warning: unused variable ‘gs’ [-Wunused-variable]
  107 | int g,gs;
      |       ^~
thrdzsc.c:102:18: warning: unused variable ‘zsc’ [-Wunused-variable]
  102 | float tg,tgp,tgm,zsc;         /* Energy of shuffled sequence */
      |                  ^~~
thrdzsc.c:95:5: warning: unused variable ‘ps’ [-Wunused-variable]
   95 | int ps,ms,cs,
      |     ^~
thrdzsc.c:80:5: warning: unused variable ‘temp’ [-Wunused-variable]
   80 | int temp;         /* Random index of the query sequence */
      |     ^~~~
thrdzsc.c:79:2: warning: unused variable ‘kk’ [-Wunused-variable]
   79 |  kk,itr,ii,jj; /* Counters */
      |  ^~
thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type]
  369 | }
      | ^
thrdzsc.c:357:39: warning: ‘tg_max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  357 |  ttb->zsc[i_max]=ScalingFactor*(tg_max-avg)/disp;
      |                                ~~~~~~~^~~~~
rm -f libncbimmdb.a
ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o  thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbimmdb.a ../lib
ranlib ../lib/libncbimmdb.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF csim.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from csim.c:74:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
csim.c: In function ‘set_pam_200’:
csim.c:163:29: warning: missing braces around initializer [-Wmissing-braces]
  163 |  static Int2 wgts[23][23] = { /* the PAM200 matrix */
      |                             ^
  164 | 
  165 |  2,-2, 0, 0,-2,-1, 0, 1,-1,-1,-2,-1,-1,-3, 1, 1, 1,-5,-3, 0, 1, 1, 0,
      |  {                                                                  }
  166 |  -2, 5, 0,-1,-3, 1,-1,-3, 1,-2,-2, 2, 0,-3, 0, 0,-1, 1,-4,-2, 0, 1, 0,
      |  {                                                                   }
  167 |   0, 0, 2, 2,-3, 0, 1, 0, 1,-1,-2, 1,-2,-2, 0, 1, 0,-4,-1,-2, 3, 2, 0,
      |   {                                                                  }
  168 |   0,-1, 2, 3,-4, 1, 3, 0, 0,-2,-3, 0,-2,-4,-1, 0, 0,-6,-3,-2, 4, 3, 0,
      |   {                                                                  }
  169 |  -2,-3,-3,-4, 8,-4,-4,-3,-3,-2,-5,-4,-4,-4,-2, 0,-2,-6, 0,-2,-3,-3, 0,
      |  {                                                                   }
  170 |  -1, 1, 0, 1,-4, 4, 2,-1, 2,-2,-1, 0,-1,-4, 0,-1,-1,-4,-3,-2, 2, 4, 0,
      |  {                                                                   }
  171 |   0,-1, 1, 3,-4, 2, 3, 0, 0,-2,-3, 0,-2,-4, 0, 0, 0,-6,-3,-2, 3, 4, 0,
      |   {                                                                  }
  172 |   1,-3, 0, 0,-3,-1, 0, 4,-2,-2,-3,-2,-3,-3,-1, 1, 0,-5,-4,-1, 1, 0, 0,
      |   {                                                                  }
  173 |  -1, 1, 1, 0,-3, 2, 0,-2, 5,-2,-2, 0,-2,-1, 0,-1,-1,-3, 0,-2, 2, 2, 0,
      |  {                                                                   }
  174 |  -1,-2,-1,-2,-2,-2,-2,-2,-2, 4, 2,-1, 2, 1,-2,-1, 0,-5,-1, 3,-1,-1, 0,
      |  {                                                                   }
  175 |  -2,-2,-2,-3,-5,-1,-3,-3,-2, 2, 4,-2, 3, 1,-2,-2,-1,-4,-1, 1,-2,-1, 0,
      |  {                                                                   }
  176 |  -1, 2, 1, 0,-4, 0, 0,-2, 0,-1,-2, 4, 1,-4,-1, 0, 0,-3,-4,-2, 1, 1, 0,
      |  {                                                                   }
  177 |  -1, 0,-2,-2,-4,-1,-2,-3,-2, 2, 3, 1, 5, 0,-2,-1, 0,-4,-2, 1,-1, 0, 0,
      |  {                                                                   }
  178 |  -3,-3,-2,-4,-4,-4,-4,-3,-1, 1, 1,-4, 0, 7,-4,-2,-2, 0, 5,-1,-2,-3, 0,
      |  {                                                                   }
  179 |   1, 0, 0,-1,-2, 0, 0,-1, 0,-2,-2,-1,-2,-4, 5, 1, 0,-5,-4,-1, 0, 1, 0,
      |   {                                                                  }
  180 |   1, 0, 1, 0, 0,-1, 0, 1,-1,-1,-2, 0,-1,-2, 1, 2, 1,-2,-2,-1, 1, 1, 0,
      |   {                                                                  }
  181 |   1,-1, 0, 0,-2,-1, 0, 0,-1, 0,-1, 0, 0,-2, 0, 1, 3,-4,-2, 0, 1, 0, 0,
      |   {                                                                  }
  182 |  -5, 1,-4,-6,-6,-4,-6,-5,-3,-5,-4,-3,-4, 0,-5,-2,-4,12, 0,-6,-3,-4, 0,
      |  {                                                                   }
  183 |  -3,-4,-1,-3, 0,-3,-3,-4, 0,-1,-1,-4,-2, 5,-4,-2,-2, 0, 7,-2,-1,-2, 0,
      |  {                                                                   }
  184 |   0,-2,-2,-2,-2,-2,-2,-1,-2, 3, 1,-2, 1,-1,-1,-1, 0,-6,-2, 4,-1,-1, 0,
      |   {                                                                  }
  185 |   1, 0, 3, 4,-3, 2, 3, 1, 2,-1,-2, 1,-1,-2, 0, 1, 1,-3,-1,-1, 4, 4, 0,
      |   {                                                                  }
  186 |   1, 1, 2, 3,-3, 4, 4, 0, 2,-1,-1, 1, 0,-3, 1, 1, 0,-4,-2,-1, 4, 5, 0,
      |   {                                                                  }
  187 |   0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
      |   {
  188 | };
      | }
csim.c:196:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  196 |        V[achars[i]][achars[j]]=10*(wgts[i][j]);
      |          ~~~~~~^~~
csim.c:196:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  196 |        V[achars[i]][achars[j]]=10*(wgts[i][j]);
      |                     ~~~~~~^~~
csim.c: In function ‘set_pam_file’:
csim.c:228:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  228 |            V[alph[i]][alph[j]]=(Int2)(10*weight);
      |              ~~~~^~~
csim.c:228:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  228 |            V[alph[i]][alph[j]]=(Int2)(10*weight);
      |                       ~~~~^~~
csim.c: In function ‘big_pass’:
csim.c:668:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  668 |       va = v[A[i]];
      |              ~^~~
csim.c:692:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  692 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c: In function ‘diff1’:
csim.c:799:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  799 |       va = v[A[1]];
      |              ~^~~
csim.c:805:23: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  805 |             { c = va[B[j]] - ( GAP(j-1) + GAP(N-j) );
      |                      ~^~~
csim.c:849:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  849 |       va = v[A[i]];
      |              ~^~~
csim.c:853:45: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  853 |    DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
      |                                            ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:853:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  853 |    DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
      |                                                  ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:874:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  874 |       va = v[A[i+1]];
      |              ~^~~~~
csim.c:878:45: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 |    DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
      |                                            ~^~~~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:878:53: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 |    DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
      |                                                    ~^~~~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:893:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  893 |       if (c > midc || CC[j] != DD[j] && RR[j] == SS[j])
      |                       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
csim.c: In function ‘locate’:
csim.c:974:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  974 |       va = v[A[i]];
      |              ~^~~
csim.c:991:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  991 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1030:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1030 |        va = v[A[(plist->m1)]];
      |               ~^~~~~~~~~~~~~
csim.c:1043:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1043 |     DIAG((plist->m1), j, c, p+va[B[j]])  /* diagonal */
      |                                  ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1061:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1061 |     if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                       ~~~~~~~~^~~~~~~~~~
csim.c:1062:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1062 |                                 || fi > rl && fj > cl ) )
      |                                    ~~~~~~~~^~~~~~~~~~
csim.c:1071:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~^~~~~~~~~~
csim.c:1072:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1072 |         || fi > rl && fj > cl ) )
      |            ~~~~~~~~^~~~~~~~~~
csim.c:1084:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1084 |        va = v[B[(plist->n1)]];
      |               ~^~~~~~~~~~~~~
csim.c:1110:42: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1110 |            DIAG(i, (plist->n1), c, p+va[A[i]])
      |                                         ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1128:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1128 |            if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                              ~~~~~~~~^~~~~~~~~~
csim.c:1129:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1129 |                  || fi > rl && fj > cl ) )
      |                     ~~~~~~~~^~~~~~~~~~
csim.c:1138:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1138 |        if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~^~~~~~~~~~
csim.c:1139:47: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1139 |                                    || fi > rl && fj > cl ) )
      |                                       ~~~~~~~~^~~~~~~~~~
csim.c:1144:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1144 |       if ( (plist->m1) == 1 && (plist->n1) == 1 || no_cross(flag, plist, &rl, &cl) )
      |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
csim.c: In function ‘small_pass’:
csim.c:1186:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1186 |       va = v[A[i]];
      |              ~^~~
csim.c:1212:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1212 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c: In function ‘display’:
csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1360 |  if (i < M || j < N)
      |     ^
csim.c: In function ‘set_pam_file’:
csim.c:227:12: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  227 |            fscanf(fp, "%f", &weight);      /**get the matrix**/
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
csim.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: csim.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
csim.c: In function ‘SIM’:
csim.c:1071:62: warning: ‘dj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                                                           ~~~^~~~
csim.c:928:23: note: ‘dj’ was declared here
  928 |   register  Int4  di, dj;  /* end-point associated with d */
      |                       ^~
csim.c:1071:51: warning: ‘di’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                                                ~~~^~~~
csim.c:928:19: note: ‘di’ was declared here
  928 |   register  Int4  di, dj;  /* end-point associated with d */
      |                   ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF db_slist.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/list.h:56,
                 from db_slist.c:97:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
db_slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: db_slist.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dust.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from dust.c:102:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: dust.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
dust.c: In function ‘slpDust.constprop’:
dust.c:655:23: warning: ‘sintp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  655 |    slp->data.ptrvalue = (Pointer) sintp;
      |    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_dust.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from blast_dust.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_dust.c:39:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   39 | static char const rcsid[] =
      |                   ^~~~~
blast_dust.c: In function ‘s_SlpDust’:
blast_dust.c:348:23: warning: ‘sintp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  348 |    slp->data.ptrvalue = (Pointer) sintp;
      |    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF falign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from falign.c:92:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
falign.c: In function ‘fbld_table’:
falign.c:490:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  490 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:494:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  494 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘bbld_table’:
falign.c:517:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  517 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:521:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  521 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rcbld_table’:
falign.c:544:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  544 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:548:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  548 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘ex_table’:
falign.c:567:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  567 |  ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                           ^~
falign.c: In function ‘free_all’:
falign.c:668:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  668 |   if (df = cdiag_prev[l]) {
      |       ^~
falign.c: In function ‘scan’:
falign.c:688:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  688 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:694:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  694 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c:710:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  710 |   if (df = diag_prev[len1+len2-1-pos]) {
      |       ^~
falign.c:719:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  719 |   if (df=diag_prev[l]) {
      |       ^~
falign.c: In function ‘fscan’:
falign.c:763:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  763 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:769:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  769 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘bscan’:
falign.c:794:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  794 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:800:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  800 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rfscan’:
falign.c:870:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  870 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:876:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  876 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c:881:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  881 |   if (df = diag_prev[len1+se2-pos]) {
      |       ^~
falign.c:889:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  889 |   if (df = diag_prev[len1+se2-pos]) {
      |       ^~
falign.c: In function ‘trcscan’:
falign.c:1476:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1476 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:1482:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1482 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rclocal’:
falign.c:1547:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1547 |  if (pf = diag_prev[ocur_diag]) {
      |      ^~
falign.c: In function ‘enterS’:
falign.c:1897:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1897 |  if (s = findS(f->bgf)) {
      |      ^
falign.c: In function ‘local’:
falign.c:1958:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1958 |  if (pf = diag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘align’:
falign.c:1999:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1999 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘calign’:
falign.c:2054:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2054 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘malign’:
falign.c:2109:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2109 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
At top level:
falign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: falign.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF g_any.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from g_any.c:89:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
g_any.c: In function ‘k_align’:
g_any.c:212:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  212 |   va = vv[A[i+1]];
      |           ~^~~~~
g_any.c:229:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  229 |    if (j < J2) c = s + va[B[j+1]];
      |                           ~^~~~~
g_any.c:319:10: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  319 |   b2 = PP[t1][b1];
      |          ^
g_any.c:322:10: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  322 |   t2 = PT[t1][b1];
      |          ^
g_any.c: In function ‘z_ALIGN’:
g_any.c:367:7: warning: variable ‘check_score’ set but not used [-Wunused-but-set-variable]
  367 |  Int4 check_score;
      |       ^~~~~~~~~~~
g_any.c: In function ‘CHECK_SCORE’:
g_any.c:492:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  492 |   score = vv[A[++i]][B[++j]] + score;
      |              ~^~~~~
g_any.c:492:23: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  492 |   score = vv[A[++i]][B[++j]] + score;
      |                      ~^~~~~
At top level:
g_any.c:428:35: warning: ‘CLINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |                                   ^~~~~
g_any.c:428:24: warning: ‘BLINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |                        ^~~~~
g_any.c:428:13: warning: ‘ALINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |             ^~~~~
g_any.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: g_any.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim2.c
sim2.c: In function ‘SIM2’:
sim2.c:19:16: warning: unused variable ‘compB’ [-Wunused-variable]
   19 |  CharPtr A, B, compB = NULL;
      |                ^~~~~
sim2.c:17:26: warning: unused variable ‘sapC’ [-Wunused-variable]
   17 |  SeqAlignPtr sap = NULL, sapC=NULL, out_sap, out_sapC;
      |                          ^~~~
At top level:
sim2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim2.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from sim3.c:28:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sim3.c: In function ‘locate’:
sim3.c:103:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  103 |   ecode = (ecode << 2) + encoding[*p++];
      |                                   ^~~~
sim3.c:105:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  105 |   ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                            ^~~~
sim3.c:113:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  113 |                 ecode = (ecode << 2) + encoding[*p++];
      |                                                 ^~~~
sim3.c:115:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  115 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
sim3.c:129:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  129 |                 ecode = (ecode << 2) + encoding[*p++];
      |                                                 ^~~~
sim3.c:133:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  133 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
sim3.c:152:46: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  152 |   ecode1 = ((ecode1 & mask) << 2) + encoding[*q++];
      |                                              ^~~~
sim3.c:155:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  155 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
At top level:
sim3.c:1067:16: warning: ‘is_end_seg’ defined but not used [-Wunused-function]
 1067 | static Boolean is_end_seg(EditScriptPtr curr, EditScriptPtr head)
      |                ^~~~~~~~~~
sim3.c:1056:13: warning: ‘get_current_pos’ defined but not used [-Wunused-function]
 1056 | static Int4 get_current_pos(Int4Ptr pos, Int4 length)
      |             ^~~~~~~~~~~~~~~
sim3.c:1048:13: warning: ‘get_start_pos’ defined but not used [-Wunused-function]
 1048 | static Int4 get_start_pos(SeqLocPtr slp)
      |             ^~~~~~~~~~~~~
sim3.c:806:13: warning: ‘Print_Script’ defined but not used [-Wunused-function]
  806 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, CharPtr A, CharPtr B)
      |             ^~~~~~~~~~~~
sim3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim3.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sim3.c: In function ‘locate’:
sim3.c:230:17: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  230 |  *j2 = paired_bj+1;
      |        ~~~~~~~~~^~
sim3.c:229:6: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  229 |  *j1 = paired_fj;
      |  ~~~~^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from sim4.c:18:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sim4.c: In function ‘sim4x’:
sim4.c:630:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  630 |   while(i1 = sgp->Blist[i].next) {
      |         ^~
sim4.c: In function ‘greedy’:
sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1770 |              if (row == 0 && col == 0)
      |                 ^
sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1794 |              if (row == 0)
      |                 ^
sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1838 |              if (col == 0)
      |                 ^
sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1962 |                if (row == m && col == n)
      |                   ^
sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1991 |                if (row == m)
      |                   ^
sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2037 |                if (col == n)
      |                   ^
sim4.c: In function ‘DISPLAY’:
sim4.c:2625:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2625 |       if (a >= ALINE+50 || i >= M && j >= N)
      |                            ~~~~~~~^~~~~~~~~
At top level:
sim4.c:2592:13: warning: ‘DISPLAY’ defined but not used [-Wunused-function]
 2592 | static void DISPLAY(Int1 A[], Int1 B[], Int4 M, Int4 N, Int4 S[], Int4 AP, Int4 BP)
      |             ^~~~~~~
sim4.c:2563:13: warning: ‘S2A’ defined but not used [-Wunused-function]
 2563 | static void S2A(EditScriptPtr head, Int4Ptr S)
      |             ^~~
sim4.c:2499:13: warning: ‘Print_Script’ defined but not used [-Wunused-function]
 2499 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, data_t *data)
      |             ^~~~~~~~~~~~
sim4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim4.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sim4.c: In function ‘locate’:
sim4.c:2919:19: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2919 |   *j2 = paired_bj + 1;
      |         ~~~~~~~~~~^~~
sim4.c:2918:7: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2918 |   *j1 = paired_fj;
      |   ~~~~^~~~~~~~~~~
sim4.c: In function ‘sim4x’:
sim4.c:2112:37: warning: ‘forth’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2112 |         if (m-min_row[back]>=max_row[forth]) {
      |                                     ^
sim4.c:1609:18: note: ‘forth’ was declared here
 1609 |   Int4     back, forth;            /* backward and forward limits at exit */
      |                  ^~~~~
sim4.c:2112:22: warning: ‘back’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2112 |         if (m-min_row[back]>=max_row[forth]) {
      |                      ^
sim4.c:1609:12: note: ‘back’ was declared here
 1609 |   Int4     back, forth;            /* backward and forward limits at exit */
      |            ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF simutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from simutil.c:103:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
simutil.c: In function ‘make_align’:
simutil.c:495:9: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
  495 |   Uint1 strand;
      |         ^~~~~~
At top level:
simutil.c:848:16: warning: ‘is_alu_seq’ defined but not used [-Wunused-function]
  848 | static Boolean is_alu_seq(CharPtr name)
      |                ^~~~~~~~~~
simutil.c:814:16: warning: ‘re_cal_score’ defined but not used [-Wunused-function]
  814 | static FloatHi re_cal_score(RecordEndsPtr o_rep, RecordEndsPtr n_rep)
      |                ^~~~~~~~~~~~
simutil.c:344:17: warning: ‘convert’ defined but not used [-Wunused-function]
  344 | static ScorePtr convert(Int4Ptr x, Int4Ptr y, Int4Ptr start, Int4Ptr length, Int4 n, SeqLocPtr locx, SeqLocPtr locy, Int2Ptr numseg, FloatHiPtr SegScores)
      |                 ^~~~~~~
simutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: simutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
simutil.c: In function ‘sort_align_list’:
simutil.c:602:20: warning: ‘score2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  602 |                 if (score2 > score1) { /* swap */
      |                    ^
simutil.c:602:20: warning: ‘score1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
simutil.c: In function ‘get_top_K_alignment’:
simutil.c:659:16: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  659 |             if (score < cut_off) break;
      |                ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF slist.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/list.h:56,
                 from slist.c:101:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: slist.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sec.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from sec.c:67:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sec.c: In function ‘Region’:
sec.c:268:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  268 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:268:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  268 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:292:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  292 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:292:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  292 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:321:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  321 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:321:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  321 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:345:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  345 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:345:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  345 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:428:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  428 |        diag_score = diag_score + V[seq1[i]][seq2[j]];
      |                                    ~~~~^~~
sec.c:428:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  428 |        diag_score = diag_score + V[seq1[i]][seq2[j]];
      |                                             ~~~~^~~
At top level:
sec.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sec.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sec.c: In function ‘Region’:
sec.c:504:11: warning: ‘old_l’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  504 |     LB[i] = old_l;
      |     ~~~~~~^~~~~~~
sec.c:72:37: warning: ‘ppj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   72 | #define Min(x,y)  ((x) <= (y) ? (x) : (y))
      |                                     ^
sec.c:172:20: note: ‘ppj’ was declared here
  172 |  Int4 pi, pj, ppi, ppj;
      |                    ^~~
sec.c:394:31: warning: ‘ppi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  394 |        for (i = ppi; i <= ci; ++i) {
      |                               ^~~
sec.c:503:29: warning: ‘pi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  503 |       for (i = pi; i <= ci; ++i) {
      |                             ^~~
sec.c:72:37: warning: ‘ej’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   72 | #define Min(x,y)  ((x) <= (y) ? (x) : (y))
      |                                     ^
sec.c:163:19: note: ‘ej’ was declared here
  163 |  Int4 bi, bj, ei, ej, t;
      |                   ^~
sec.c:163:15: warning: ‘ei’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  163 |  Int4 bi, bj, ei, ej, t;
      |               ^~
sec.c:71:37: warning: ‘bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   71 | #define Max(x,y)  ((x) >= (y) ? (x) : (y))
      |                                     ^
sec.c:163:11: note: ‘bj’ was declared here
  163 |  Int4 bi, bj, ei, ej, t;
      |           ^~
sec.c:462:16: warning: ‘bi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  462 |      MemFree(LB+bi);
      |                ^
sec.c:463:16: warning: ‘RB’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  463 |      MemFree(RB+bi);
      |              ~~^~~
sec.c:462:16: warning: ‘LB’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  462 |      MemFree(LB+bi);
      |              ~~^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tfuns.c
tfuns.c: In function ‘find_orf’:
tfuns.c:866:26: warning: unused variable ‘into’ [-Wunused-variable]
  866 |  IntFuzzPtr infrom=NULL, into=NULL;
      |                          ^~~~
tfuns.c:866:13: warning: unused variable ‘infrom’ [-Wunused-variable]
  866 |  IntFuzzPtr infrom=NULL, into=NULL;
      |             ^~~~~~
At top level:
tfuns.c:977:13: warning: ‘find_orf_from_circle’ defined but not used [-Wunused-function]
  977 | static void find_orf_from_circle (SeqPortPtr spp, Boolean flagIsCircle,
      |             ^~~~~~~~~~~~~~~~~~~~
tfuns.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: tfuns.c,v 6.17 2015/08/17 17:15:09 bollin Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF toasn3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from toasn3.c:10:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
toasn3.c: In function ‘FindOrg’:
toasn3.c:1444:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 1444 |     Int4        len;
      |                 ^~~
toasn3.c: In function ‘CheckQualsWithComm’:
toasn3.c:1731:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
 1731 |     OrgRefPtr    orp;
      |                  ^~~
toasn3.c: In function ‘CheckQuals’:
toasn3.c:1768:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
 1768 |     OrgRefPtr    orp;
      |                  ^~~
toasn3.c: In function ‘CountSourceFeat’:
toasn3.c:2570:13: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2570 |     Pointer pnt;
      |             ^~~
toasn3.c:2561:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2561 |     ValNodePtr    vnp;
      |                   ^~~
toasn3.c: In function ‘TASNTrimInternalSemicolons’:
toasn3.c:4155:12: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 4155 |   CharPtr  tmp;
      |            ^~~
toasn3.c: In function ‘ImpFeatToProtRef’:
toasn3.c:4861:13: warning: variable ‘lfree’ set but not used [-Wunused-but-set-variable]
 4861 |     Boolean lfree = FALSE, partial5, partial3;
      |             ^~~~~
toasn3.c: In function ‘RemovePeptideImpFeats’:
toasn3.c:5160:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable]
 5160 |     ImpFeatPtr         ifp;
      |                        ^~~
At top level:
toasn3.c:1711:16: warning: ‘GetQualValue’ defined but not used [-Wunused-function]
 1711 | static CharPtr GetQualValue(GBQualPtr gbqual, CharPtr qual)
      |                ^~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from toasn3.c:19:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
toasn3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: toasn3.c,v 6.150 2016/11/02 23:36:09 kans Exp $";
      |                   ^~~~~
toasn3.c: In function ‘CdEndCheck’:
toasn3.c:4666:16: warning: ‘m_oldto’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4666 |       msip->to = m_oldto;
      |       ~~~~~~~~~^~~~~~~~~
toasn3.c:4665:18: warning: ‘m_oldfrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4665 |       msip->from = m_oldfrom;
      |       ~~~~~~~~~~~^~~~~~~~~~~
toasn3.c:4663:13: warning: ‘oldto’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4663 |     sip->to = oldto;
      |     ~~~~~~~~^~~~~~~
toasn3.c:4662:15: warning: ‘oldfrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4662 |     sip->from = oldfrom;
      |     ~~~~~~~~~~^~~~~~~~~
toasn3.c: In function ‘FixNucProtSet’:
toasn3.c:2205:21: warning: ‘bseg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2205 |         bseg->annot = sap;
      |         ~~~~~~~~~~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF toporg.c
toporg.c: In function ‘ChkSegset’:
toporg.c:64:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable]
   64 |   Boolean       is_org = FALSE, is_modif = FALSE, is_title = FALSE;
      |                                                   ^~~~~~~~
toporg.c:63:17: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
   63 |   OrgRefPtr     orp;
      |                 ^~~
toporg.c:60:17: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   60 |   Pointer       pnt;
      |                 ^~~
toporg.c:55:17: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
   55 |   ValNodePtr    vnp = NULL, set_vnp = NULL, upd_date_vnp = NULL;
      |                 ^~~
toporg.c: In function ‘ChkNucProt’:
toporg.c:608:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable]
  608 |   Boolean       is_org = FALSE, is_modif = FALSE, is_title = FALSE;
      |                                                   ^~~~~~~~
toporg.c: In function ‘StripBSfromParts’:
toporg.c:1330:17: warning: variable ‘empty’ set but not used [-Wunused-but-set-variable]
 1330 |   Boolean       empty;
      |                 ^~~~~
toporg.c:1329:17: warning: variable ‘bsmp’ set but not used [-Wunused-but-set-variable]
 1329 |   BSMapPtr      bsmp;
      |                 ^~~~
toporg.c:1328:29: warning: variable ‘set_vnp’ set but not used [-Wunused-but-set-variable]
 1328 |   ValNodePtr    descr, vnp, set_vnp;
      |                             ^~~~~~~
toporg.c: In function ‘MapsToGenref’:
toporg.c:2021:17: warning: variable ‘loc’ set but not used [-Wunused-but-set-variable]
 2021 |   SeqLocPtr     loc;
      |                 ^~~
toporg.c:2016:17: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable]
 2016 |   ValNodePtr    descr = NULL, head, last, vnp;
      |                 ^~~~~
toporg.c: In function ‘FindOldLineage’:
toporg.c:2606:17: warning: variable ‘lineage’ set but not used [-Wunused-but-set-variable]
 2606 |   CharPtr       lineage;
      |                 ^~~~~~~
toporg.c: In function ‘ArePubsMergeableForFig’:
toporg.c:4796:36: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses]
 4796 |         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
      |                                    ^~
toporg.c:4796:12: note: add parentheses around left hand side expression to silence this warning
 4796 |         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
      |            (                      )
toporg.c: In function ‘StripBadTitleFromProteinProducts’:
toporg.c:5311:22: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable]
 5311 |   Uint1              tech;
      |                      ^~~~
toporg.c: In function ‘FindPubWithFig’:
toporg.c:5647:10: warning: variable ‘a’ set but not used [-Wunused-but-set-variable]
 5647 |     Int4 a = 0;
      |          ^
toporg.c: In function ‘AddMissingGeneXref’:
toporg.c:5955:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
 5955 |   Int2               count;
      |                      ^~~~~
toporg.c: In function ‘ConvertSegSetToDeltaSeqInt’:
toporg.c:7093:18: warning: unused variable ‘str’ [-Wunused-variable]
 7093 |   CharPtr        str, ttl = NULL;
      |                  ^~~
toporg.c:7086:18: warning: unused variable ‘ovp’ [-Wunused-variable]
 7086 |   ObjValNodePtr  ovp;
      |                  ^~~
At top level:
toporg.c:5475:13: warning: ‘SynchronizePseudogenesProc’ defined but not used [-Wunused-function]
 5475 | static void SynchronizePseudogenesProc (
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
toporg.c:3119:13: warning: ‘BarCodeTechToKeyword’ defined but not used [-Wunused-function]
 3119 | static void BarCodeTechToKeyword (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~~~
toporg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: toporg.c,v 6.251 2016/11/02 23:36:10 kans Exp $";
      |                   ^~~~~
toporg.c: In function ‘MergeEquivCitSubs’:
toporg.c:3905:7: warning: ‘csp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3905 |   if (DateMatch (csp1->date, csp2->date, FALSE) != 0) return FALSE;
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
toporg.c:3925:18: note: ‘csp1’ was declared here
 3925 |   CitSubPtr      csp1, csp2;
      |                  ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pobutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/pobutil.h:7,
                 from pobutil.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pobutil.c: In function ‘build_repeat_feat’:
pobutil.c:187:7: warning: unused variable ‘c’ [-Wunused-variable]
  187 |  Char c='%';
      |       ^
pobutil.c: In function ‘merge_StdSeg’:
pobutil.c:1033:7: warning: variable ‘start_1’ set but not used [-Wunused-but-set-variable]
 1033 |  Int4 start_1, stop_1, start_2, stop_2;
      |       ^~~~~~~
pobutil.c:1031:7: warning: unused variable ‘overlap’ [-Wunused-variable]
 1031 |  Int4 overlap = -1;
      |       ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/pobutil.h:7,
                 from pobutil.c:3:
pobutil.c: In function ‘FindHumanRepeats’:
../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args]
  191 | #define Nlm_MemSet  memset
      |                     ^~~~~~
../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’
  210 | #define MemSet  Nlm_MemSet
      |                 ^~~~~~~~~~
pobutil.c:2380:2: note: in expansion of macro ‘MemSet’
 2380 |  MemSet((Pointer) (&tmp), sizeof(ValNode), 0);
      |  ^~~~~~
../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args]
  191 | #define Nlm_MemSet  memset
      |                     ^~~~~~
../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’
  210 | #define MemSet  Nlm_MemSet
      |                 ^~~~~~~~~~
pobutil.c:2381:2: note: in expansion of macro ‘MemSet’
 2381 |  MemSet((Pointer) (&si), sizeof(SeqInt), 0);
      |  ^~~~~~
pobutil.c: In function ‘AluFeat’:
pobutil.c:2431:10: warning: variable ‘my_userdata’ set but not used [-Wunused-but-set-variable]
 2431 |  Pointer my_userdata;
      |          ^~~~~~~~~~~
At top level:
pobutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pobutil.c,v 6.10 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF stsutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from stsutil.c:88:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
stsutil.c: In function ‘InitSTSSearch_r’:
stsutil.c:270:10: warning: unused variable ‘StsCount’ [-Wunused-variable]
  270 |     Int4 StsCount=0;
      |          ^~~~~~~~
stsutil.c: In function ‘GetSTSEntry’:
stsutil.c:635:13: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
  635 |     CharPtr p;
      |             ^
stsutil.c: In function ‘STSCalculateHash’:
stsutil.c:753:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  753 |         if ((j = HashCode[*p++]) < 0)
      |                           ^~~~
stsutil.c: In function ‘STSReverse’:
stsutil.c:771:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  771 |         if ((*t = ComplCode[*s]) == 0)
      |                             ^~
stsutil.c: In function ‘InitHashTable’:
stsutil.c:910:21: warning: variable ‘sts_uid’ set but not used [-Wunused-but-set-variable]
  910 |     CharPtr gb_uid, sts_uid;
      |                     ^~~~~~~
stsutil.c:910:13: warning: variable ‘gb_uid’ set but not used [-Wunused-but-set-variable]
  910 |     CharPtr gb_uid, sts_uid;
      |             ^~~~~~
stsutil.c:908:23: warning: variable ‘gi’ set but not used [-Wunused-but-set-variable]
  908 |     Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
      |                       ^~
stsutil.c:908:10: warning: variable ‘id_sts’ set but not used [-Wunused-but-set-variable]
  908 |     Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
      |          ^~~~~~
stsutil.c:907:23: warning: unused variable ‘error’ [-Wunused-variable]
  907 |     Int4  LineLength, error= FALSE;
      |                       ^~~~~
At top level:
stsutil.c:892:13: warning: ‘STSHashInitFree’ defined but not used [-Wunused-function]
  892 | static void STSHashInitFree(STSHashInitPtr sts)
      |             ^~~~~~~~~~~~~~~
stsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: stsutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
stsutil.c: In function ‘GetSTSEntry’:
stsutil.c:654:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
  654 |     TmpVal[j][k-1] = NULLB;
stsutil.c:633:10: note: at offset 0 to object ‘TmpVal’ with size 1152 declared here
  633 |     Char TmpVal[MAXDBPAR][128];
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggadj.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggadj.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggadj.c: In function ‘score_possible_splice_sites’:
suggadj.c:874:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  874 | score = ( vx[seq_or_rev[putative_donor]]==3) ?10:0;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:875:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  875 | score += (vx[seq_or_rev[putative_acceptor]]==3 )?10:0;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
suggadj.c:878:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 | score += ( vx[seq_or_rev[putative_donor+1]]==0 )?3:0;
      |               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
suggadj.c:879:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  879 | score += ( vx[seq_or_rev[putative_acceptor-1]]==2 )?3:0;
      |               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c: In function ‘check_split_codon’:
suggadj.c:985:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  985 | val_assuming_1_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
      |                              ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:986:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  986 |  vx[seq_or_rev[right_starts-2]]*4+
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:987:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  987 |  vx[seq_or_rev[right_starts-1]];
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:998:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  998 | val_assuming_2_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
      |                              ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:999:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  999 |  vx[seq_or_rev[left_ends+2]] * 4 +
      |     ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:1000:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1000 |  vx[seq_or_rev[right_starts-1]];
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c: In function ‘overlapping_fixer’:
suggadj.c:1370:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1370 |     test_val = vx[seq_or_rev[left_exon_ends]]*16 +
      |                   ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:1371:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1371 |      vx[seq_or_rev[right_exon_starts-1]];
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c:1373:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1373 |      test_val += vx[seq_or_rev[right_exon_starts-2]]*4;
      |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c:1375:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1375 |      test_val += vx[seq_or_rev[left_exon_ends+1]]*4;
      |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
At top level:
suggadj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggadj.c,v 6.3 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggest.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggest.c:199:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggest.c: In function ‘get_frames’:
suggest.c:458:14: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  458 |    val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
      |             ~^~~
suggest.c:458:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  458 |    val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
      |                           ~^~~
At top level:
suggest.c:1331:13: warning: ‘ReportSuggestIntervalsError’ defined but not used [-Wunused-function]
 1331 | static void ReportSuggestIntervalsError (SeqRecPtr srp, CharPtr gen_txt)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
suggest.c:1222:1: warning: ‘fprintf_m_stk_entry’ defined but not used [-Wunused-function]
 1222 | fprintf_m_stk_entry(FILE *fp, Int4 index, char *msg)
      | ^~~~~~~~~~~~~~~~~~~
suggest.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggest.c,v 6.14 2009/04/10 17:22:14 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggslp.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggslp.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggslp.c: In function ‘MakeReverseSequence’:
suggslp.c:190:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  190 |   *t++ = r[*--s];
      |            ^~~~
At top level:
suggslp.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggslp.c,v 6.6 2009/04/16 18:35:41 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blast.c:2572:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast.c: In function ‘BlastReevaluateWithAmbiguities’:
blast.c:2954:24: warning: variable ‘query_end’ set but not used [-Wunused-but-set-variable]
 2954 |  Uint1Ptr query_start, query_end, subject_real_start=NULL;
      |                        ^~~~~~~~~
blast.c:2949:16: warning: variable ‘hspcnt’ set but not used [-Wunused-but-set-variable]
 2949 |  Int4 context, hspcnt, hspcnt_max, index, index1, status;
      |                ^~~~~~
blast.c: In function ‘BlastGetVirtualOIDList’:
blast.c:3179:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3179 |         if (virtual_oidlist = rdfp_chain->oidlist) {
      |             ^~~~~~~~~~~~~~~
blast.c: In function ‘BlastGetDbChunk’:
blast.c:3210:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3210 |         if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
      |             ^~~~~~~~~~~~~~~
blast.c: In function ‘BlastCreateQueryDNAP’:
blast.c:4100:11: warning: variable ‘strand_option’ set but not used [-Wunused-but-set-variable]
 4100 |     Uint1 strand_option;
      |           ^~~~~~~~~~~~~
blast.c: In function ‘BlastReapPartialHitlistByEvalue’:
blast.c:6486:10: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 6486 |          else
      |          ^~~~
blast.c:6490:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 6490 |      if( !search->mult_queries )
      |      ^~
blast.c: In function ‘BlastWordFinder_contig’:
blast.c:7094:16: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 7094 |  register Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |                ^~~~~~~~~~~~~
blast.c: In function ‘BlastWordExtend’:
blast.c:7835:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable]
 7835 |  BLAST_Score  leftsum, rightsum, rightscore, leftscore;
      |                                              ^~~~~~~~~
blast.c: In function ‘BlastNewWordExtend’:
blast.c:7982:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable]
 7982 |  BLAST_Score  leftsum, rightsum, rightscore, leftscore;
      |                                              ^~~~~~~~~
blast.c: In function ‘BlastNtWordFinder_mh’:
blast.c:8843:23: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 8843 |         register Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |                       ^~~~~~~~~~~~~
blast.c:8842:103: warning: variable ‘compression_factor’ set but not used [-Wunused-but-set-variable]
 8842 |         Int4            s_pos, q_off, s_off, offset, virtual_wordsize, wordsize, compressed_wordsize, compression_factor;
      |                                                                                                       ^~~~~~~~~~~~~~~~~~
blast.c: In function ‘BlastNtWordFinder’:
blast.c:9076:14: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 9076 |         Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |              ^~~~~~~~~~~~~
blast.c: In function ‘BlastSaveCurrentHitlist’:
blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
10115 |         if( hitlist_max > 1 )
      |           ^
blast.c:9785:7: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable]
 9785 |  Int4 query_length;
      |       ^~~~~~~~~~~~
blast.c: In function ‘SumHSPEvalue’:
blast.c:10588:9: warning: variable ‘gap_size’ set but not used [-Wunused-but-set-variable]
10588 |    Int4 gap_size, num, subject_length;
      |         ^~~~~~~~
blast.c: In function ‘link_hsps’:
blast.c:11267:10: warning: variable ‘frame_change’ set but not used [-Wunused-but-set-variable]
11267 |  Boolean frame_change, linked_set, ignore_small_gaps;
      |          ^~~~~~~~~~~~
At top level:
blast.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast.c,v 6.451 2008/01/25 21:15:22 bealer Exp $";
      |                   ^~~~~
blast.c: In function ‘blastMergeFilterLocs’:
blast.c:3985:16: warning: ‘dup_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3985 |        dup_slp = (SeqLocPtr) dup_slp->data.ptrvalue;
      |        ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast.c: In function ‘BlastLinkHsps’:
blast.c:10455:41: warning: ‘orig_hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10455 |                 search->current_hitlist = orig_hitlist;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastutl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastutl.c:1836:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastutl.c: In function ‘BlastSeqLocFilterEx’:
blastutl.c:7554:11: warning: statement with no effect [-Wunused-value]
 7554 | stop_timer("after repeat filtering");
      |           ^
blastutl.c: In function ‘BlastPreliminaryGappedScore’:
blastutl.c:9853:30: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable]
 9853 |  Int4 index, max_offset = 0, query_length, min_score;
      |                              ^~~~~~~~~~~~
blastutl.c: In function ‘BlastGetGappedScore’:
blastutl.c:10282:11: warning: statement with no effect [-Wunused-value]
10282 | stop_timer("after BlastGappedScoreInternal");
      |           ^
At top level:
blastutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastutl.c,v 6.472 2010/12/10 18:47:12 madden Exp $";
      |                   ^~~~~
blastutl.c: In function ‘BlastNtFindWords’:
blastutl.c:11445:10: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11445 |      end = MIN(end, len-initial_wordsize);
blastutl.c: In function ‘BlastFindWords’:
blastutl.c:11623:8: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11623 |   stop = MIN(stop, len);
blastutl.c:11711:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11711 |     start_score2 += matrix[(Int4) *(str+index2)][*(words+index2)];
      |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11704:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11704 |     start_score = second_score+first_score;
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11695:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11695 |     diff2 += diff;
      |     ~~~~~~^~~~~~~
blastutl.c: In function ‘BlastNewFindWords_Old’:
blastutl.c:11931:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11931 |     start_score2 += MtrxScorePosSearch(search->sbp,
blastutl.c:11924:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11924 |     start_score = second_score+first_score;
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11915:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11915 |     diff2 += diff;
      |     ~~~~~~^~~~~~~
blastutl.c: In function ‘BlastNewFindWordsEx’:
blastutl.c:12124:30: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12124 |                 start_score2 += posMatrix[offset+index2][*(words+index2)];
      |                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:12118:29: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12118 |                 start_score = second_score + first_score;
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:12110:23: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12110 |                 diff2 += diff;
      |                 ~~~~~~^~~~~~~
blastutl.c: In function ‘RealBlastGetGappedAlignmentTraceback’:
blastutl.c:9377:56: warning: ‘seqalign_array’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9377 |                                 seqalign_array[index2] =
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~^
 9378 |                                    SeqAlignFree(seqalign_array[index2]);
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c: In function ‘SumBlastGetGappedAlignmentEx’:
blastutl.c:9670:33: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9670 |   HeapSort(hsp_array+start,(stop-start),sizeof(BLAST_HSPPtr), score_compare_hsps);
      |                            ~~~~~^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastool.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastool.c:946:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastool.c: In function ‘BlastScaleMatrix’:
blastool.c:3032:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 3032 |     else
      |     ^~~~
blastool.c:3035:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 3035 |  if (new_lambda > lambda)
      |  ^~
blastool.c: In function ‘OOFBlastHSPGetNumIdentical’:
blastool.c:6081:9: warning: variable ‘context’ set but not used [-Wunused-but-set-variable]
 6081 |    Int2 context;
      |         ^~~~~~~
At top level:
blastool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastool.c,v 6.292 2007/03/15 20:39:17 madden Exp $";
      |                   ^~~~~
blastool.c: In function ‘BlastCreateVirtualOIDList’:
blastool.c:2556:24: warning: ‘gilist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2556 |     BlastDoubleInt4Ptr gilist, real_gilist = NULL, *real_gilist_ptrs = NULL;
      |                        ^~~~~~
blastool.c: In function ‘BlastInsertList2Heap’:
blastool.c:3595:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3595 |   context = hsp->query_offset / query_length;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
blastool.c: In function ‘BlastFreeHeap’:
blastool.c:3687:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3687 |   context = hsp->query_offset / query_length;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
blastool.c: In function ‘BLASTFilterOverlapRegions’:
blastool.c:4531:24: warning: ‘next_tail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4531 |             tail->next = seqalign;
      |             ~~~~~~~~~~~^~~~~~~~~~
blastool.c: In function ‘BlastPrintAlignInfo’:
blastool.c:4800:23: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4800 |             sap->next = SeqAlignNew();
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~
blastool.c: In function ‘MegaBlastPrintAlignInfo’:
blastool.c:963:17: warning: ‘subject_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  963 | #define fprintf blastool_fprintf
      |                 ^~~~~~~~~~~~~~~~
blastool.c:5046:30: note: ‘subject_seq_buffer’ was declared here
 5046 |    CharPtr query_seq_buffer, subject_seq_buffer;
      |                              ^~~~~~~~~~~~~~~~~~
blastool.c:963:17: warning: ‘query_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  963 | #define fprintf blastool_fprintf
      |                 ^~~~~~~~~~~~~~~~
blastool.c:5046:12: note: ‘query_seq_buffer’ was declared here
 5046 |    CharPtr query_seq_buffer, subject_seq_buffer;
      |            ^~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastconcat.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastconcat.c:89:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastconcat.c: In function ‘BlastMakeFakeBspConcat’:
blastconcat.c:648:12: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
  648 |  SeqLocPtr slp = NULL;
      |            ^~~
At top level:
blastconcat.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastconcat.c,v 1.14 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF splutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from splutil.c:52:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
splutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: splutil.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gapxdrop.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/gapxdrop.h:150,
                 from gapxdrop.c:368:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gapxdrop.c: In function ‘ALIGN_EX’:
gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  864 |       if (s == 1)
      |          ^
gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  867 |       if (s == 2)
      |          ^
At top level:
gapxdrop.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: gapxdrop.c,v 6.76 2003/11/07 21:52:52 dondosha Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg0.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg0.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg0.c: In function ‘g_band0_align’:
bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  273 |       if(leftd >= 1)
      |         ^
At top level:
bandalg0.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg0.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg1.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg1.c: In function ‘gband_quadratic’:
bandalg1.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   54 |   Int4 c, i, j;
      |              ^
bandalg1.c: In function ‘g_band1_align’:
bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  205 |     if(leftd >= 1)
      |       ^
At top level:
bandalg1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg1.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg2.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg2.c: In function ‘gb_linear_align’:
bandalg2.c:208:24: warning: variable ‘misma’ set but not used [-Wunused-but-set-variable]
  208 |   register Int4 match, misma;
      |                        ^~~~~
bandalg2.c:208:17: warning: variable ‘match’ set but not used [-Wunused-but-set-variable]
  208 |   register Int4 match, misma;
      |                 ^~~~~
bandalg2.c:207:18: warning: variable ‘AA’ set but not used [-Wunused-but-set-variable]
  207 |   register Uint1 AA;
      |                  ^~
At top level:
bandalg2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg2.c,v 6.5 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
bandalg2.c: In function ‘gb_linear_align’:
bandalg2.c:576:11: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  576 |  } else if(Y != N) {
      |           ^
bandalg2.c:574:4: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  574 |  if(X != M) {
      |    ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg3.c:37:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg3.c: In function ‘gband_linear_qgap’:
bandalg3.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   54 |   Int4 c, i, j;
      |              ^
At top level:
bandalg3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg3.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg3.c: In function ‘gband_linear_qgap’:
bandalg3.c:314:41: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  314 |         else if(Y != rightd) _INS(rightd-Y)
      |                                         ^
bandalg3.c:185:28: note: ‘Y’ was declared here
  185 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg3.c:313:21: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  313 |   if(X != M) _DEL(M - X)
      |                     ^
bandalg3.c:185:25: note: ‘X’ was declared here
  185 |   Int4 ib, best=MININT, X, Y;
      |                         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg4.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg4.c:37:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg4.c: In function ‘g_band4_align_small’:
bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  826 |     if (e == 1)
      |        ^
bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  829 |     if (e == 2)
      |        ^
bandalg4.c:630:8: warning: variable ‘band’ set but not used [-Wunused-but-set-variable]
  630 |   Int4 band, j;
      |        ^~~~
At top level:
bandalg4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg4.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg4.c: In function ‘g_band4_align’:
bandalg4.c:534:22: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  534 |       if(X != M || Y != N) regA = regB = 1;
      |                    ~~^~~~
bandalg4.c:534:12: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  534 |       if(X != M || Y != N) regA = regB = 1;
      |          ~~^~~~
bandalg4.c:562:7: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  562 |       g_band4_align(A, B, r - 1, r + rmid, rmid + 1,
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  563 |      MIN(up, r + rmid), tb, 1, legA, legB, 1, 1, data);
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bandalg4.c:857:37: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  857 |   else if (Y != rightd) _INS(rightd - Y);
      |                                     ^
bandalg4.c:640:28: note: ‘Y’ was declared here
  640 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg4.c:856:6: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  856 |   if (X != M) _DEL(M - X)
      |      ^
bandalg4.c:640:25: note: ‘X’ was declared here
  640 |   Int4 ib, best=MININT, X, Y;
      |                         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg5.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg5.c:36:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg5.c: In function ‘gband_q3gap’:
bandalg5.c:56:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   56 |   Int4 c, i, j;
      |              ^
bandalg5.c: In function ‘g_band5_align’:
bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  292 |     if (e == 1)
      |        ^
bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  295 |     if (e == 2)
      |        ^
At top level:
bandalg5.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg5.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg5.c: In function ‘gband_q3gap’:
bandalg5.c:320:32: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  320 |   if (Y != rightd) _INS(rightd - Y);
      |                                ^
bandalg5.c:146:28: note: ‘Y’ was declared here
  146 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg5.c:319:22: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  319 |   if (X != M) _DEL(M - X);
      |                      ^
bandalg5.c:146:25: note: ‘X’ was declared here
  146 |   Int4 ib, best=MININT, X, Y;
      |                         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalgn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from bandalgn.c:118:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalgn.c: In function ‘ExtendSeqAlign’:
bandalgn.c:1113:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
 1113 |        DenseDiagPtr  ddp;
      |                      ^~~
bandalgn.c: In function ‘CC_ExtendSeqAlign’:
bandalgn.c:1188:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
 1188 |        DenseDiagPtr  ddp;
      |                      ^~~
At top level:
bandalgn.c:699:14: warning: ‘HSblastna_to_ncbi4na’ defined but not used [-Wunused-variable]
  699 | static Uint1 HSblastna_to_ncbi4na[] = {   1, /* A, 0 */
      |              ^~~~~~~~~~~~~~~~~~~~
bandalgn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalgn.c,v 6.17 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalgn.c: In function ‘LocalBandToEditBlock’:
bandalgn.c:463:20: warning: ‘edit_block’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  463 |   lbsp->edit_block = edit_block;
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bandalgn.c: In function ‘SetLowUpFromBlast’:
bandalgn.c:1053:7: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1053 |    if (maxsc < val) {
      |       ^
bandalgn.c:1060:7: warning: ‘alnlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1060 |    if (maxlen < alnlen) {
      |       ^
bandalgn.c:1070:9: warning: ‘maxdi_up’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1070 |    maxy = MAX(maxy,maxdi_up);
bandalgn.c:1069:9: warning: ‘mindi_low’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1069 |    miny = MIN(miny,mindi_low);
bandalgn.c:1055:10: warning: ‘maxdi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1055 |     maxy = maxdi + width;
      |     ~~~~~^~~~~~~~~~~~~~~
bandalgn.c:1056:10: warning: ‘mindi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1056 |     miny = mindi - width;
      |     ~~~~~^~~~~~~~~~~~~~~
bandalgn.c: In function ‘GetAlignExtremes’:
bandalgn.c:1309:7: warning: ‘y2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1309 |  *yy2 = y2;
      |  ~~~~~^~~~
bandalgn.c:1308:7: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1308 |  *yy1 = y1;
      |  ~~~~~^~~~
bandalgn.c:1307:7: warning: ‘x2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1307 |  *xx2 = x2;
      |  ~~~~~^~~~
bandalgn.c:1306:7: warning: ‘x1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1306 |  *xx1 = x1;
      |  ~~~~~^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastkar.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastkar.c:648:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastkar.c:2373:25: warning: ‘Altschul_prob’ defined but not used [-Wunused-variable]
 2373 | static BLAST_LetterProb Altschul_prob[] = {
      |                         ^~~~~~~~~~~~~
blastkar.c:2347:25: warning: ‘Dayhoff_prob’ defined but not used [-Wunused-variable]
 2347 | static BLAST_LetterProb Dayhoff_prob[] = {
      |                         ^~~~~~~~~~~~
blastkar.c:1121:13: warning: ‘blosum62_20_prefs’ defined but not used [-Wunused-variable]
 1121 | static Int4 blosum62_20_prefs[BLOSUM62_20_VALUES_MAX] = {
      |             ^~~~~~~~~~~~~~~~~
blastkar.c:1053:21: warning: ‘blosum62_20_values’ defined but not used [-Wunused-variable]
 1053 | static Nlm_FloatHi  blosum62_20_values[BLOSUM62_20_VALUES_MAX][8] = {
      |                     ^~~~~~~~~~~~~~~~~~
blastkar.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastkar.c,v 6.115 2006/12/14 17:08:19 madden Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF actutils.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/actutils.h:103,
                 from actutils.c:232:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
actutils.c: In function ‘SlideToHit’:
actutils.c:346:23: warning: variable ‘done’ set but not used [-Wunused-but-set-variable]
  346 |     Boolean inIsland, done;
      |                       ^~~~
actutils.c:346:13: warning: variable ‘inIsland’ set but not used [-Wunused-but-set-variable]
  346 |     Boolean inIsland, done;
      |             ^~~~~~~~
actutils.c: In function ‘ResolveSpinConflict’:
actutils.c:1484:35: warning: unused variable ‘row2_conflict’ [-Wunused-variable]
 1484 |    Boolean row1_conflict = FALSE, row2_conflict = FALSE;
      |                                   ^~~~~~~~~~~~~
actutils.c:1484:12: warning: unused variable ‘row1_conflict’ [-Wunused-variable]
 1484 |    Boolean row1_conflict = FALSE, row2_conflict = FALSE;
      |            ^~~~~~~~~~~~~
actutils.c: In function ‘ACT_FindBestAlnByDotPlot’:
actutils.c:2002:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 2002 |    Uint1           strand;
      |                    ^~~~~~
actutils.c:2001:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2001 |    Int4            start2;
      |                    ^~~~~~
actutils.c:2000:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2000 |    Int4            start1;
      |                    ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from actutils.c:232:
actutils.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
actutils.c:3132:13: warning: ‘DumpAlignments’ defined but not used [-Wunused-function]
 3132 | static void DumpAlignments (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~
actutils.c:2927:13: warning: ‘MapBioseqToBioseqSpecial’ defined but not used [-Wunused-function]
 2927 | static Int4 MapBioseqToBioseqSpecial(SeqAlignPtr sap, Int4 begin, Int4 fin, Int4 pos, Int4 which_end)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
actutils.c:1654:16: warning: ‘SpinsConflict’ defined but not used [-Wunused-function]
 1654 | static Boolean SpinsConflict (SQN_nPtr spin1, SQN_nPtr spin2, Int4 fuzz, Int4 strand)
      |                ^~~~~~~~~~~~~
actutils.c:1392:13: warning: ‘am_fix_strand’ defined but not used [-Wunused-function]
 1392 | static void am_fix_strand(SeqAlignPtr sap, Uint1 strand1, Uint1 strand2)
      |             ^~~~~~~~~~~~~
actutils.c:1375:16: warning: ‘am_isa_gap’ defined but not used [-Wunused-function]
 1375 | static Boolean am_isa_gap(Int4 start, Int4 prevstop, Uint1 strand)
      |                ^~~~~~~~~~
actutils.c:749:13: warning: ‘StateTableSearch’ defined but not used [-Wunused-function]
  749 | static void StateTableSearch (TextFsaPtr tbl, CharPtr txt, Int4Ptr state, Int4 pos, ACT_sitelistPtr PNTR asp_prev, ACT_sitelistPtr PNTR asp_head)
      |             ^~~~~~~~~~~~~~~~
actutils.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: actutils.c,v 6.56 2008/10/22 17:19:22 bollin Exp $";
      |                   ^~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/actutils.h:103,
                 from actutils.c:232:
actutils.c: In function ‘GetOldBlastAlignmentPiece’:
../include/ncbimem.h:232:23: warning: ‘program’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
actutils.c:3089:25: note: ‘program’ was declared here
 3089 |    CharPtr              program;
      |                         ^~~~~~~
actutils.c: In function ‘ACT_FindPeakScores’:
actutils.c:1342:31: warning: ‘ats_newprev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1342 |             ats_newprev->next = ats_new;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~
actutils.c:1321:28: warning: ‘ats_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1321 |             ats_prev->next = ats;
      |             ~~~~~~~~~~~~~~~^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF posit.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from posit.c:402:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
posit.c: In function ‘posDemographics’:
posit.c:1110:17: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable]
 1110 |    Int4 numseq, numSeqAligns;  /*number of matching sequences and SeqAligns*/
      |                 ^~~~~~~~~~~~
posit.c: In function ‘posFreqsToMatrix’:
posit.c:1679:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4)) + (sizetype)((unsigned int)a * 4))’ may be undefined [-Wsequence-point]
 1679 |      posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
posit.c: In function ‘posComputePseudoFreqs’:
posit.c:1840:16: warning: variable ‘lambda’ set but not used [-Wunused-but-set-variable]
 1840 |    Nlm_FloatHi lambda; /*Karlin-Altschul parameter*/
      |                ^~~~~~
posit.c: In function ‘WposComputation’:
posit.c:1988:13: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable]
 1988 |     Int4 i, numSeqAligns, numseq, qlength;
      |             ^~~~~~~~~~~~
posit.c: In function ‘posPrintInformation’:
posit.c:2319:8: warning: variable ‘querySize’ set but not used [-Wunused-but-set-variable]
 2319 |   Int4 querySize;
      |        ^~~~~~~~~
posit.c: In function ‘posFindAlignmentDimensions’:
posit.c:3064:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3064 |     fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3070:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3070 |     fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3079:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3079 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3086:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3086 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c: In function ‘posPreprocessAlignment’:
posit.c:3137:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3137 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3152:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3152 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c: In function ‘posReadAlignment’:
posit.c:3253:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3253 |  fgets(nextline, ALIGN_LINE_LENGTH,checkFile);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
posit.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: posit.c,v 6.88 2011/10/25 14:33:16 boratyng Exp $";
      |                   ^~~~~
posit.c: In function ‘posFindAlignmentDimensions’:
posit.c:3090:20: warning: ‘testCountSeqs’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3090 |       testCountSeqs++;
      |       ~~~~~~~~~~~~~^~
posit.c: In function ‘posComputeSequenceWeights’:
posit.c:1447:36: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1447 |        posSearch->posSigma[qplace] = intervalSigma;
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
posit.c:1424:11: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1424 |        if (Sigma > 0) {
      |           ^
posit.c: In function ‘posReadCheckpoint’:
posit.c:2873:28: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2873 |   if (i < pssm->numColumns || j < pssm->numRows) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
posit.c:2702:11: note: ‘j’ was declared here
 2702 |   Int4 i, j, c;
      |           ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from lookup.c:308:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
lookup.c: In function ‘lookup_get_memory’:
lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  555 |             Uint8 extra = ((Uint8)mem_struct->current) & ((Uint8) 63);
      |                            ^
In file included from ../include/blastdef.h:922,
                 from ../include/blast.h:470,
                 from lookup.c:309:
lookup.c: In function ‘MegaBlastBuildLookupTable’:
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1047:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1047 |                                   GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
      |                                   ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1051:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1051 |                                   GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
      |                                   ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1078:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1078 |                               GET_EXTRA_CODE_18_OPT(seq) | bit0;
      |                               ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1082:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1082 |                               GET_EXTRA_CODE_18_OPT(seq) | bit0;
      |                               ^~~~~~~~~~~~~~~~~~~~~
lookup.c:914:25: warning: variable ‘extra_code’ set but not used [-Wunused-but-set-variable]
  914 |    register Int4 ecode, extra_code;
      |                         ^~~~~~~~~~
At top level:
lookup.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: lookup.c,v 6.59 2005/07/28 14:57:10 coulouri Exp $";
      |                   ^~~~~
lookup.c: In function ‘MegaBlastBuildLookupTable’:
lookup.c:975:10: warning: ‘word_weight’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  975 |       if (word_weight >= 12) {
      |          ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF readdb.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
readdb.c: In function ‘readdb_parse_db_names’:
readdb.c:2503:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2503 |         if (**filenames == '"')
      |            ^
readdb.c: In function ‘s_GetBlastDirInfo’:
readdb.c:2734:32: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
 2734 |     memset(blast_dir, 0, sizeof(blast_dir));
      |                                ^
readdb.c: In function ‘IndexFileExists’:
readdb.c:3320:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3320 |         if (rdfp->cih)
      |         ^~
readdb.c:3326:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3326 |             if (rdbap->first_oid > 0) {
      |             ^~
readdb.c:3400:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3400 |         if (rdfp->cih && rdfp->aliasfilebit == 0)
      |         ^~
readdb.c:3406:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3406 |             if (rdbap->first_oid > 0) {
      |             ^~
readdb.c: In function ‘FindBlastDBFileEx’:
readdb.c:3480:33: warning: unused variable ‘envp’ [-Wunused-variable]
 3480 |     CharPtr    buffer, buffer1, envp = NULL;
      |                                 ^~~~
readdb.c: In function ‘readdb_new_internalEx’:
readdb.c:3558:25: warning: unused variable ‘envp’ [-Wunused-variable]
 3558 |     CharPtr    charptr, envp = NULL;
      |                         ^~~~
readdb.c: In function ‘readdb_get_link’:
readdb.c:4752:12: warning: variable ‘loaded_new’ set but not used [-Wunused-but-set-variable]
 4752 |    Boolean loaded_new = FALSE;
      |            ^~~~~~~~~~
readdb.c:4751:24: warning: variable ‘last_used’ set but not used [-Wunused-but-set-variable]
 4751 |    ReadDBFILEPtr last, last_used, rdfp_var;
      |                        ^~~~~~~~~
readdb.c: In function ‘readdb_check_oid’:
readdb.c:4896:38: warning: comparisons like ‘X<=Y<=Z’ do not have their mathematical meaning [-Wparentheses]
 4896 |                  if (rdfp_var->start <= oid <= rdfp_var->stop)
      |                      ~~~~~~~~~~~~~~~~^~~~~~
readdb.c: In function ‘readdb_seqid2fasta’:
readdb.c:5236:22: warning: unused variable ‘dummy_gi’ [-Wunused-variable]
 5236 |                 Int4 dummy_gi = 0; /* Not used, should have been handled above. */
      |                      ^~~~~~~~
readdb.c:5180:13: warning: unused variable ‘chptr’ [-Wunused-variable]
 5180 |     CharPtr chptr = NULL;
      |             ^~~~~
readdb.c: In function ‘FDBuildOldStyleDefline’:
readdb.c:6366:33: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
 6366 |     MemSet(defline, '\0', sizeof(defline));
      |                                 ^
readdb.c: In function ‘PrintDbInformationWithRID’:
readdb.c:7571:14: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 7571 |     if (rdfp == FALSE)
      |              ^~
readdb.c:7571:9: note: did you mean to dereference the pointer?
 7571 |     if (rdfp == FALSE)
      |         ^
readdb.c: In function ‘FDBLoadMembershipsTable’:
readdb.c:8265:21: warning: variable ‘fn_name’ set but not used [-Wunused-but-set-variable]
 8265 |         const char* fn_name = NULL;
      |                     ^~~~~~~
readdb.c: In function ‘SeqIdE2Index’:
readdb.c:8613:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 8613 |     if ((tsip->version > 0) && (tsip->release == NULL))
      |     ^~
readdb.c:8615:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 8615 |         break;
      |         ^~~~~
readdb.c:8618:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 8618 |     if (tsip->version > 0)
      |     ^~
readdb.c:8620:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 8620 |         break;
      |         ^~~~~
readdb.c:8577:13: warning: unused variable ‘tmp’ [-Wunused-variable]
 8577 |     CharPtr tmp, ptr=NULL;
      |             ^~~
readdb.c:8576:11: warning: unused variable ‘tmptype’ [-Wunused-variable]
 8576 |     Uint1 tmptype;
      |           ^~~~~~~
readdb.c: In function ‘SeqIdSetE2Index’:
readdb.c:8881:14: warning: variable ‘oldanp’ set but not used [-Wunused-but-set-variable]
 8881 |     SeqIdPtr oldanp;
      |              ^~~~~~
readdb.c: In function ‘FindDBbyGI’:
readdb.c:11397:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
11397 |    if (gi > cih->maxgi)
      |    ^~
readdb.c:11400:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
11400 |     cigi = cih->ci + gi;
      |     ^~~~
readdb.c: In function ‘Fastacmd_Search_ex’:
readdb.c:12080:22: warning: variable ‘guess_gi’ set but not used [-Wunused-but-set-variable]
12080 |     Int4             guess_gi = -1;
      |                      ^~~~~~~~
readdb.c: In function ‘DumpOneSequence’:
readdb.c:12407:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
12407 |      fprintf(fp, "%d\n", gi->data.intvalue);
      |                   ~^     ~~~~~~~~~~~~~~~~~
      |                    |             |
      |                    int           Nlm_Int8 {aka long long int}
      |                   %lld
readdb.c:12417:14: warning: unused variable ‘numeric_id’ [-Wunused-variable]
12417 |      Boolean numeric_id = GetAccessionVersionFromSeqId(accn, &gi, &id, TRUE);
      |              ^~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from readdb.c:2067:
readdb.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
readdb.c:12829:1: warning: ‘readdb_preload_index’ defined but not used [-Wunused-function]
12829 | readdb_preload_index (ReadDBFILEPtr rdfp, Int4 first_db_seq,
      | ^~~~~~~~~~~~~~~~~~~~
In file included from readdb.c:2060:
../include/ncbisami.h:191:14: warning: ‘OneBit’ defined but not used [-Wunused-variable]
  191 | static Uint1 OneBit[] = {0x80 , 0x40, 0x20, 0x10, 0x8, 0x4, 0x2, 0x1};
      |              ^~~~~~
../include/ncbisami.h:183:14: warning: ‘PowersOfTwo’ defined but not used [-Wunused-variable]
  183 | static Uint4 PowersOfTwo[] = {01,02,04,010,020,040,0100,0200,0400,01000,
      |              ^~~~~~~~~~~
readdb.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: readdb.c,v 6.549 2016/09/02 15:04:59 ucko Exp $";
      |                   ^~~~~
readdb.c: In function ‘readdb_read_alias_file’:
readdb.c:3084:53: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3084 |                         sprintf(full_buffer, "%s%c%s", file_path,
      |                                                     ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3090:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3090 |                             sprintf(full_buffer, "%s%c%s", file_path,
      |                                                         ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2994:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2994 |                             sprintf(full_buffer, "%s%c%s", file_path,
      |                                                         ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘Int4ListReadFromFile’:
readdb.c:2656:31: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2656 |     sprintf(file_name, "%s%s%s", blast_dir, DIRDELIMSTR, FileNameFind(fname));
      |                               ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘ReadDBOpenMHdrAndSeqFiles’:
readdb.c:2277:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2277 |       sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2296:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2296 |       sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2252:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2252 |      sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2259:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2259 |       sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘readdb_get_taxonomy_names’:
readdb.c:5679:28: warning: ‘ufp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5679 |             ufp_last->next = ufp;
      |             ~~~~~~~~~~~~~~~^~~~~
readdb.c: In function ‘readdb_get_descriptor’:
readdb.c:6668:44: warning: ‘new_defline_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6668 |                         new_defline_length += StringLen(defline) + StringLen(id_buf);
      |                                            ^~
readdb.c: In function ‘readdb_new_internalEx’:
readdb.c:3600:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3600 |         sprintf(buffer1, "%s%s%s", buffer, DIRDELIMSTR, filename);
      |                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3671:25: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3671 |     sprintf(buffer, "%s.%cin", rdfp->full_filename, is_prot? 'p':'n');
      |                         ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3811:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3811 |     sprintf(buffer,  "%s.%cnd", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3812:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3812 |     sprintf(buffer1, "%s.%cni", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3825:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3825 |     sprintf(buffer,  "%s.%csd", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3826:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3826 |     sprintf(buffer1, "%s.%csi", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3845:29: warning: ‘.ppd’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
 3845 |         sprintf(buffer,  "%s.ppd", rdfp->full_filename);
      |                             ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3846:29: warning: ‘.ppi’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
 3846 |         sprintf(buffer1, "%s.ppi", rdfp->full_filename);
      |                             ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘GetAccList’:
readdb.c:11821:29: warning: ‘AccListLast’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11821 |           AccListLast->next = AccListTmp;
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
readdb.c: In function ‘FD_ConstructMultivolumeDBList’:
readdb.c:12690:31: warning: ‘%03ld’ directive writing between 3 and 10 bytes into a region of size 9 [-Wformat-overflow=]
12690 |             sprintf(numstr, ".%03ld ", (long) i);
      |                               ^~~~~
readdb.c:12690:29: note: directive argument in the range [100, 2147483646]
12690 |             sprintf(numstr, ".%03ld ", (long) i);
      |                             ^~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 13 bytes into a destination of size 10
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisam.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbisam.c:198:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbisam.c: In function ‘ISAMMakeStringIndex’:
ncbisam.c:842:22: warning: unused variable ‘file_pos’ [-Wunused-variable]
  842 |                 Int4 file_pos = ftell(data->db_fd);
      |                      ^~~~~~~~
ncbisam.c: In function ‘ISAMInitSearch’:
ncbisam.c:1399:10: warning: variable ‘reserved2’ set but not used [-Wunused-but-set-variable]
 1399 |     Int4 reserved2;
      |          ^~~~~~~~~
At top level:
ncbisam.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: ncbisam.c,v 6.34 2007/11/06 19:20:06 coulouri Exp $";
      |                   ^~~~~
ncbisam.c: In function ‘ISAMMakeNumericIndex’:
ncbisam.c:984:21: warning: ‘KeyDataInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  984 |     NISAMKeyDataPtr KeyDataInfo, KeyDataSamples;
      |                     ^~~~~~~~~~~
ncbisam.c:983:14: warning: ‘KeyInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  983 |     Uint4Ptr KeyInfo, KeySamples;
      |              ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
ncbisam.c: In function ‘ISAMCreateDatabase’:
../include/ncbimem.h:232:23: warning: ‘prevterm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1181:13: note: ‘prevterm’ was declared here
 1181 |     CharPtr prevterm;
      |             ^~~~~~~~
In file included from ../include/ncbimsg.h:78,
                 from ../include/ncbi.h:60,
                 from ncbisam.c:198:
../include/ncbierr.h:246:23: warning: ‘field_in’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  246 | #define ErrLogPrintf  Nlm_ErrLogPrintf
      |                       ^~~~~~~~~~~~~~~~
ncbisam.c:1177:37: note: ‘field_in’ was declared here
 1177 |     unsigned long uid_in, uid_last, field_in;
      |                                     ^~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
ncbisam.c: In function ‘NISAMSearch’:
../include/ncbimem.h:232:23: warning: ‘KeyDataPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1622:55: note: ‘KeyDataPageStart’ was declared here
 1622 |     NISAMKeyDataPtr KeyDataPage=NULL, KeyDataSamples, KeyDataPageStart;
      |                                                       ^~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
../include/ncbimem.h:232:23: warning: ‘KeyPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1619:34: note: ‘KeyPageStart’ was declared here
 1619 |     Int4 NumElements, *KeyPage, *KeyPageStart;
      |                                  ^~~~~~~~~~~~
ncbisam.c:1750:36: warning: ‘KeyPage’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1750 |             Key = SwapUint4(KeyPage[current]);
      |                                    ^
ncbisam.c:1593:24: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1593 |     *Start = SampleNum * data->PageSize;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~
ncbisam.c:1618:27: note: ‘SampleNum’ was declared here
 1618 |     Int4 Start = 0, Stop, SampleNum;
      |                           ^~~~~~~~~
ncbisam.c: In function ‘SISAMSearch’:
ncbisam.c:2373:8: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2373 |     if ( (SampleNum < 0) || (SampleNum >= data->NumSamples)) {
      |        ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisort.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbisort.h:62,
                 from ../include/ncbisrti.h:60,
                 from ncbisort.c:86:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbisort.c: In function ‘SORTFracCompare’:
ncbisort.c:699:12: warning: type defaults to ‘int’ in declaration of ‘tmpa’ [-Wimplicit-int]
  699 |   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
      |            ^~~~
ncbisort.c:699:30: warning: type defaults to ‘int’ in declaration of ‘tmpb’ [-Wimplicit-int]
  699 |   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
      |                              ^~~~
In file included from ncbisort.c:86:
ncbisort.c: At top level:
../include/ncbisrti.h:213:13: warning: ‘inthandler’ declared ‘static’ but never defined [-Wunused-function]
  213 | static void inthandler(int i);
      |             ^~~~~~~~~~
ncbisort.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: ncbisort.c,v 6.9 2012/08/22 23:02:39 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salign.h:10,
                 from salign.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salign.c: In function ‘BandAlignTwoSeqLocsFunc’:
salign.c:173:13: warning: variable ‘is_prot’ set but not used [-Wunused-but-set-variable]
  173 |   Boolean   is_prot;
      |             ^~~~~~~
salign.c: In function ‘SortBlastHits’:
salign.c:391:15: warning: variable ‘totalvalmax’ set but not used [-Wunused-but-set-variable]
  391 |               totalvalmax = INT4_MAX,
      |               ^~~~~~~~~~~
salign.c: In function ‘link_solution’:
salign.c:1188:15: warning: unused variable ‘first’ [-Wunused-variable]
 1188 |   Boolean     first = TRUE;
      |               ^~~~~
At top level:
salign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: salign.c,v 6.11 2009/01/21 17:09:18 bollin Exp $";
      |                   ^~~~~
salign.c: In function ‘SortBlastHits’:
salign.c:455:6: warning: ‘salpdup’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  455 |      SeqAlignSetFree (salpdup);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~
salign.c: In function ‘TranslateSeqLoc.constprop’:
salign.c:660:10: warning: ‘slpp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  660 |   return slpp;
      |          ^~~~
salign.c: In function ‘BlastBandAlignTwoSeqLocs.constprop’:
salign.c:1433:17: warning: ‘tail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1433 |      tail->next = salptmp;
      |      ~~~~~~~~~~~^~~~~~~~~
salign.c:1408:15: note: ‘tail’ was declared here
 1408 |               tail,
      |               ^~~~
salign.c:1348:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |          intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1301:30: note: ‘stop’ was declared here
 1301 |   Int4        start, start1, stop;
      |                              ^~~~
salign.c:1348:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |          intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1301:22: note: ‘start1’ was declared here
 1301 |   Int4        start, start1, stop;
      |                      ^~~~~~
salign.c:1270:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1270 |          intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1229:30: note: ‘stop’ was declared here
 1229 |   Int4        start, start1, stop;
      |                              ^~~~
salign.c:1270:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1270 |          intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1229:22: note: ‘start1’ was declared here
 1229 |   Int4        start, start1, stop;
      |                      ^~~~~~
salign.c: In function ‘SeqLocListToSeqAlign’:
salign.c:1670:24: warning: ‘master_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1670 |            salpblast = BlastTwoSeqLocs (master_slp, slp, is_prot, msp);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salptool.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from salptool.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salptool.c: In function ‘MergeTwoDspBySIM4’:
salptool.c:285:10: warning: variable ‘has_overlap’ set but not used [-Wunused-but-set-variable]
  285 |  Boolean has_overlap;
      |          ^~~~~~~~~~~
salptool.c:281:7: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
  281 |  Int4 gap=0,gap_1, gap_2;
      |       ^~~
salptool.c: In function ‘extend_dsp_ends’:
salptool.c:1329:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1329 |                     else
      |                     ^~~~
salptool.c:1331:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1331 |    if(extend_len > 0)
      |    ^~
salptool.c:1346:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1346 |                     else
      |                     ^~~~
salptool.c:1348:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1348 |    if(extend_len > 0)
      |    ^~
salptool.c:1363:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1363 |                     else
      |                     ^~~~
salptool.c:1365:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1365 |    if(extend_len > 0)
      |    ^~
salptool.c:1380:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1380 |                     else
      |                     ^~~~
salptool.c:1382:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1382 |    if(extend_len > 0)
      |    ^~
In file included from ../include/sqnutils.h:51,
                 from salptool.c:12:
salptool.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salptool.c:14:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salptool.c:1518:24: warning: ‘OrderBestHits’ defined but not used [-Wunused-function]
 1518 | static int LIBCALLBACK OrderBestHits(Pointer ptr1, Pointer ptr2)
      |                        ^~~~~~~~~~~~~
salptool.c:1468:13: warning: ‘showtextalign_fromalign’ defined but not used [-Wunused-function]
 1468 | static void showtextalign_fromalign (SeqAlignPtr salp, CharPtr path, FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
salptool.c:1453:13: warning: ‘getlengthforid’ defined but not used [-Wunused-function]
 1453 | static Int4 getlengthforid (SeqIdPtr sip)
      |             ^~~~~~~~~~~~~~
salptool.c:1267:16: warning: ‘need_recompute’ defined but not used [-Wunused-function]
 1267 | static Boolean need_recompute(SeqAlignPtr align, Int4 m_len, Int4 s_len)
      |                ^~~~~~~~~~~~~~
salptool.c:838:13: warning: ‘SeqLocTrimPolyATail’ defined but not used [-Wunused-function]
  838 | static void SeqLocTrimPolyATail(SeqLocPtr loc_2, BioseqPtr bsp_2) {
      |             ^~~~~~~~~~~~~~~~~~~
salptool.c:46:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function]
   46 | static void SeqAnnotWrite(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~
salptool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: salptool.c,v 6.57 2008/07/07 18:52:31 bollin Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from urkutil.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkutil.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkpcc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkpcc.h:54,
                 from urkpcc.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkpcc.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkpcc.c,v 6.13 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkptpf.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from urkptpf.c:65:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkptpf.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkptpf.c,v 6.33 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkepi.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkepi.h:54,
                 from urkepi.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkepi.c: In function ‘PredictEpiI0’:
urkepi.c:214:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  214 |       epip->epiarray[*seq] += 1;
      |                      ^~~~
urkepi.c:239:59: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  239 |       episcore = DownArrayScore (episcore, epip->epiarray[*seq]);
      |                                                           ^~~~
urkepi.c:240:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  240 |       epip->epiarray[*seq] += 1;
      |                      ^~~~
urkepi.c:241:57: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  241 |       episcore = UpArrayScore (episcore, epip->epiarray[*seq]);
      |                                                         ^~~~
urkepi.c:263:59: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  263 |       episcore = DownArrayScore (episcore, epip->epiarray[*(seq-window)]);
      |                                                           ^~~~~~~~~~~~~
urkepi.c:264:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  264 |       epip->epiarray[*(seq-window)] -= 1;
      |                      ^~~~~~~~~~~~~
urkepi.c:265:57: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  265 |       episcore = UpArrayScore (episcore, epip->epiarray[*(seq-window)]);
      |                                                         ^~~~~~~~~~~~~
urkepi.c: In function ‘OptimizeEpiComp’:
urkepi.c:605:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  605 |           bin[seq[i]] += 1;
      |               ~~~^~~
urkepi.c:621:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  621 |           bin[seq[i]] += 1;
      |               ~~~^~~
urkepi.c:651:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  651 |       if (fbin[seq[i]] > expect)
      |                ~~~^~~
urkepi.c:657:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  657 |       if (fbin[seq[i]] > expect)
      |                ~~~^~~
urkepi.c: In function ‘OptimizeEpiHP’:
urkepi.c:782:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  782 |             epip->epiarray[seq[j]] += 1;
      |                            ~~~^~~
urkepi.c:797:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  797 |             epip->epiarray[seq[j]] += 1;
      |                            ~~~^~~
urkepi.c:837:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  837 |           epip->epiarray[seq[n]] -= 1;
      |                          ~~~^~~
urkepi.c: In function ‘OptimizeEpiProbFunc’:
urkepi.c:982:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  982 |             epip->epiarray[seq[n]] += 1;
      |                            ~~~^~~
urkepi.c:994:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  994 |             epip->epiarray[seq[n]] += 1;
      |                            ~~~^~~
At top level:
urkepi.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkepi.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
urkepi.c: In function ‘FilterEpi’:
urkepi.c:1053:21: warning: ‘right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1053 |         cfap->right = right;
      |         ~~~~~~~~~~~~^~~~~~~
urkepi.c:936:56: note: ‘right’ was declared here
  936 |   Int4      i, n, j, k, start, stop, loop, fact, left, right;
      |                                                        ^~~~~
urkepi.c:1052:20: warning: ‘left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1052 |         cfap->left = left;
      |         ~~~~~~~~~~~^~~~~~
urkepi.c:936:50: note: ‘left’ was declared here
  936 |   Int4      i, n, j, k, start, stop, loop, fact, left, right;
      |                                                  ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkfltr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkfltr.h:51,
                 from urkfltr.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkfltr.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkfltr.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkdust.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkdust.h:51,
                 from urkdust.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkdust.c: In function ‘DustMe_h’:
urkdust.c:196:42: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  196 |             (dcvp->curlevel <= newlevel) && dcvp->curend == loop+1)
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
urkdust.c: In function ‘DustForGraph’:
urkdust.c:776:17: warning: variable ‘drphead’ set but not used [-Wunused-but-set-variable]
  776 |   DustRegionPtr drphead;
      |                 ^~~~~~~
At top level:
urkdust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkdust.c,v 6.10 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urksigu.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urksigu.h:57,
                 from urksigu.c:59:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urksigu.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urksigu.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seg.c
seg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: seg.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
seg.c: In function ‘getprob’:
seg.c:935:15: warning: ‘ans2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  935 |    ans = ans1 + ans2 - totseq;
      |          ~~~~~^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkbias.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from urkbias.c:56:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkbias.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkbias.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkcnsrt.h:60,
                 from urkcnsrt.c:80:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkcnsrt.c:1203:13: warning: ‘ScanFrame’ defined but not used [-Wunused-function]
 1203 | static void ScanFrame (BioseqPtr bsp, SeqLocPtr slp, Int4 frame,
      |             ^~~~~~~~~
urkcnsrt.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkcnsrt.c,v 6.21 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
urkcnsrt.c: In function ‘Scan3Frames’:
urkcnsrt.c:1385:5: warning: ‘length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1385 |     for (i = n; i < length; i++)
      |     ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urktree.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urktree.h:51,
                 from urktree.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urktree.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urktree.c,v 6.6 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pseed3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pseed3.c:176:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pseed3.c: In function ‘SeedPruneHitsFromSeedReturn’:
pseed3.c:230:17: warning: variable ‘curSegs’ set but not used [-Wunused-but-set-variable]
  230 |     DenseSegPtr curSegs, testSegs; /*Used to extract ids from curSeqAlign, testSeqAlign*/
      |                 ^~~~~~~
pseed3.c: In function ‘seedEngineCore’:
pseed3.c:507:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  507 |     while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
      |            ^~~~~~~
pseed3.c: In function ‘output_hits’:
pseed3.c:1202:10: warning: variable ‘posBaseIndex’ set but not used [-Wunused-but-set-variable]
 1202 |     Int4 posBaseIndex; /*loop index for copying pos results arrays*/
      |          ^~~~~~~~~~~~
pseed3.c: In function ‘init_order’:
pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1483 |  seedSearch->order[seedSearch->pchars[i]] = i;
      |                                      ^
pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1483 |  seedSearch->order[seedSearch->pchars[i]] = i;
      |                    ~~~~~~~~~~~~~~~~~~^~~
pseed3.c:1487:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1487 |         seedSearch->charMultiple[i] = 0;
      |                                 ^
pseed3.c:1489:30: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1489 |  if (seedSearch->standardProb[i] > seedepsilon) {
      |                              ^
pseed3.c:1490:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1490 |    matrixRow = matrix[i];
      |                      ^
pseed3.c:1493:34: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1493 |      if (seedSearch->standardProb[j] > seedepsilon)
      |                                  ^
pseed3.c:1494:42: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1494 |        rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
      |                                          ^
pseed3.c:1494:86: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1494 |        rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
      |                                                                                      ^
pseed3.c:1496:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1496 |    seedSearch->charMultiple[i] = rowSum;
      |                            ^
At top level:
pseed3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pseed3.c,v 6.54 2008/10/31 18:51:07 madden Exp $";
      |                   ^~~~~
pseed3.c: In function ‘seedParallelFill’:
pseed3.c:712:68: warning: iteration 100 invokes undefined behavior [-Waggressive-loop-optimizations]
  712 |      returnData->seedSearch->name_space[i] = seedSearch->name_space[i];
      |                                              ~~~~~~~~~~~~~~~~~~~~~~^~~
pseed3.c:711:4: note: within this loop
  711 |    for( i = 0; i <= BUF_SIZE; i++)
      |    ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pattern1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pattern1.c:80:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pattern1.c: In function ‘init_pattern’:
pattern1.c:286:70: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  286 |      positionProbability = seedSearch->standardProb[seedSearch->order[c]];
      |                                                     ~~~~~~~~~~~~~~~~~^~~
pattern1.c:303:71: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  303 |      positionProbability += seedSearch->standardProb[seedSearch->order[c]];
      |                                                      ~~~~~~~~~~~~~~~~~^~~
pattern1.c:317:71: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  317 |      positionProbability -= seedSearch->standardProb[seedSearch->order[c]];
      |                                                      ~~~~~~~~~~~~~~~~~^~~
pattern1.c: In function ‘find_hitsS_DNA’:
pattern1.c:534:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  534 |     if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
      |         ^~~
pattern1.c:547:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  547 |   if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
      |       ^~~
pattern1.c: At top level:
pattern1.c:744:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
  744 | static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch)
      |        ^~~
pattern1.c: In function ‘and’:
pattern1.c:750:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  750 |       if (result[i] = (a[i] & b[i]))
      |           ^~~~~~
pattern1.c: In function ‘align’:
pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1102 |    if (leftd >= 1)
      |       ^
pattern1.c: In function ‘pat_output’:
pattern1.c:1637:2: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1637 |  else
      |  ^~~~
pattern1.c:1639:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1639 |           ValNodeCopyStr(info_vnp, 0, buffer);
      |           ^~~~~~~~~~~~~~
At top level:
pattern1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pattern1.c,v 6.22 2006/08/04 21:11:17 papadopo Exp $";
      |                   ^~~~~
pattern1.c: In function ‘align’:
pattern1.c:1158:8: warning: ‘CDrow’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1158 |  score = (CDrow-1)->CC;
      |  ~~~~~~^~~~~~~~~~~~~~~
pattern1.c: In function ‘get_patLL’:
pattern1.c:1393:5: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1393 |     for (j = 0; j < pos; j+= wordIndex) {
      |     ^~~
pattern1.c: In function ‘get_patL’:
pattern1.c:1348:10: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |     *end = wordIndex*BITS_PACKED_PER_WORD+j;
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pattern1.c: In function ‘init_pattern’:
pattern1.c:359:39: warning: ‘tj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  359 |  patternSearch->inputPatternMasked[i] = tempInputPatternMasked[i];
      |  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
pattern1.c: In function ‘align_of_pattern’:
pattern1.c:1506:23: warning: ‘data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1506 |        local_score += ALIGN_B(querySeq-1, dbSeq-1, hitArray1[wordIndex+1], hitArray2[wordIndex+1],
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1507 |       BAND_LOW, BAND_HIGH, matrix, gap_open, gap_extend, alignScript, data);
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF impatool.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from impatool.c:73:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
impatool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: impatool.c,v 6.16 2006/06/30 18:44:40 camacho Exp $";
      |                   ^~~~~
In file included from ../include/ncbi.h:59,
                 from impatool.c:73:
impatool.c: In function ‘IMPALAPrintHelp’:
../include/ncbimem.h:232:23: warning: ‘ret_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
impatool.c:288:10: note: ‘ret_buffer’ was declared here
  288 |  CharPtr ret_buffer;
      |          ^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF posit2.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from posit2.c:78:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
posit2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: posit2.c,v 6.12 2006/09/18 20:54:27 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mbalign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/mbalign.h:4,
                 from mbalign.c:176:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mbalign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: mbalign.c,v 6.43 2006/02/02 17:57:34 papadopo Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vecscrn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vecscrn.h:74,
                 from vecscrn.c:103:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vecscrn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: vecscrn.c,v 6.137 2005/12/27 14:46:44 madden Exp $";
      |                   ^~~~~
vecscrn.c: In function ‘VSPrintOverviewFromSeqLocs’:
vecscrn.c:1078:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1078 |   while (tmp)
      |         ^
vecscrn.c: In function ‘VSPrintListFromSeqLocs’:
vecscrn.c:1188:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1188 |   while (tmp)
      |         ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mblast.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mblast.c:710:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mblast.c: In function ‘BioseqMegaBlastEngineCore’:
mblast.c:961:12: warning: statement with no effect [-Wunused-value]
  961 |  stop_timer("BioseqBlastEngineCore: before do_the_blast_run()");
      |            ^
mblast.c:987:12: warning: statement with no effect [-Wunused-value]
  987 |  stop_timer("MegaBlastEngineCore: after do_the_blast_run()");
      |            ^
mblast.c:942:14: warning: variable ‘seqalign’ set but not used [-Wunused-but-set-variable]
  942 |  SeqAlignPtr seqalign, PNTR seqalignp;
      |              ^~~~~~~~
mblast.c: In function ‘MegaBlastSetUpSearchInternalByLoc’:
mblast.c:1167:16: warning: variable ‘avglen’ set but not used [-Wunused-but-set-variable]
 1167 |    Nlm_FloatHi avglen;
      |                ^~~~~~
mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’:
mblast.c:1829:14: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
 1829 |    SeqLocPtr slp;
      |              ^~~
mblast.c: In function ‘MegaBlastWordFinder_disc_1b’:
mblast.c:2372:32: warning: variable ‘mask’ set but not used [-Wunused-but-set-variable]
 2372 |    register Int4 s_off, ecode, mask, q_off, extra_code;
      |                                ^~~~
At top level:
mblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: mblast.c,v 6.215 2006/09/21 13:42:37 madden Exp $";
      |                   ^~~~~
mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’:
mblast.c:1864:19: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1864 |         sap->next = seqalign_var;
      |         ~~~~~~~~~~^~~~~~~~~~~~~~
mblast.c: In function ‘MegaBlastWordFinder_disc’:
mblast.c:2250:53: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2250 |                        (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
      |                                              ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2151:47: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2151 |          for (q_off = lookup->mb_lt->hashtable[ecode1]; q_off>0;
      |                                               ^
mblast.c: In function ‘MegaBlastWordFinder’:
mblast.c:2620:54: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2620 |                         (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
      |                                               ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2373:17: note: ‘ecode2’ was declared here
 2373 |    Int4 ecode1, ecode2;
      |                 ^~~~~~
mblast.c:2475:52: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2475 |                       (((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0)
      |                                             ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2373:9: note: ‘ecode1’ was declared here
 2373 |    Int4 ecode1, ecode2;
      |         ^~~~~~
mblast.c: In function ‘MegaBlastGapInfoToSeqAlign’:
mblast.c:3504:16: warning: ‘seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3504 |    SeqAlignPtr seqalign, seqalign_var, sap;
      |                ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF rpsutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rpsutil.c: In function ‘RPSBlastSearchLight’:
rpsutil.c:1838:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1838 |     Int2 status;
      |          ^~~~~~
rpsutil.c: In function ‘SaveUntilChar’:
rpsutil.c:2190:13: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 2190 |     if (ptr != NULLB)
      |             ^~
rpsutil.c:2190:9: note: did you mean to dereference the pointer?
 2190 |     if (ptr != NULLB)
      |         ^
rpsutil.c: In function ‘RPSBgetCddHits’:
rpsutil.c:2210:21: warning: variable ‘found_score’ set but not used [-Wunused-but-set-variable]
 2210 |   Boolean           found_score = FALSE;
      |                     ^~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from rpsutil.c:282:
rpsutil.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘getAuxInformation’:
rpsutil.c:398:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  398 |     fscanf(matrixAuxiliaryFile,"%s",underlyingMatrixName);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:404:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  404 |     fscanf(matrixAuxiliaryFile,"%d\n", gap_open);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:405:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  405 |     fscanf(matrixAuxiliaryFile,"%d\n", gap_extend);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  406 |     fscanf(matrixAuxiliaryFile, "%le", &Kungapped);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:407:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  407 |     fscanf(matrixAuxiliaryFile, "%le", &Hungapped);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:408:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  408 |     fscanf(matrixAuxiliaryFile, "%d", &maxLength);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:409:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  409 |     fscanf(matrixAuxiliaryFile, "%d", &dbLength);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:410:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  410 |     fscanf(matrixAuxiliaryFile, "%lf", &privateScalingFactor);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:415:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  415 |      fscanf(matrixAuxiliaryFile, "%d", &maxLength);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:416:6: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  416 |      fscanf(matrixAuxiliaryFile, "%le", &(rpsinfo->karlinK[index]));
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
rpsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: rpsutil.c,v 6.76 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
rpsutil.c: In function ‘RPSAlignTraceBack’:
rpsutil.c:1444:32: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1444 |         search->sbp->posMatrix = posMatrix;
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
rpsutil.c:1433:24: warning: ‘rev_subject_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1433 |             seqalign = BlastGetGapAlgnTbck (search, 0, TRUE, FALSE,
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1434 |                                             subject, subject_length,
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~
 1435 |                                             rev_subject, rev_subject_length);
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘RPSInitEx’:
rpsutil.c:451:28: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  451 |     sprintf(rps_matrix, "%s.rps", rpsinfo->rdfp->full_filename);
      |                            ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:452:28: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  452 |     sprintf(rps_lookup, "%s.loo", rpsinfo->rdfp->full_filename);
      |                            ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:453:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  453 |     sprintf(rps_aux, "%s.aux", rpsinfo->rdfp->full_filename);
      |                         ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘RPSCalcEValue’:
rpsutil.c:1269:30: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1269 |       search->sbp->posMatrix = posMatrix;
      |       ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
rpsutil.c: In function ‘RPSBgetCddHits’:
../include/ncbistr.h:284:20: warning: ‘dbname’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  284 | #define Nlm_StrCmp strcmp
      |                    ^~~~~~
rpsutil.c:2212:21: note: ‘dbname’ was declared here
 2212 |   CharPtr           dbname;
      |                     ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF kappa.c
kappa.c: In function ‘Kappa_SequenceGetProteinRange’:
kappa.c:1399:7: warning: unused variable ‘i’ [-Wunused-variable]
 1399 |   int i;
      |       ^
At top level:
kappa.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: kappa.c,v 6.94 2013/11/04 15:42:10 boratyng Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF xmlblast.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/xmlblast.h:89,
                 from xmlblast.c:171:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
xmlblast.c: In function ‘PSIXmlInit’:
xmlblast.c:1239:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
 1239 |     Boolean retval = FALSE;
      |             ^~~~~~
At top level:
xmlblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: xmlblast.c,v 6.41 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
xmlblast.c: In function ‘BXMLGetSeqLineForStdSeg’:
xmlblast.c:373:28: warning: ‘genetic_code2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  373 |     CharPtr genetic_code1, genetic_code2;
      |                            ^~~~~~~~~~~~~
xmlblast.c: In function ‘BXMLSeqAlignToHits’:
xmlblast.c:867:36: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  867 |                     if((hspp->next = BXMLGetHspFromSeqAlign(sap2, is_aa, chain,
      |                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  868 |                                         is_ooframe, mask_loc)) == NULL)
      |                                         ~~~~~~~~~~~~~~~~~~~~~~
xmlblast.c: In function ‘SeqAlignToHits’:
xmlblast.c:1646:24: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1646 |             hspp->next = GetHspFromSeqAlign(sap2, ungapped, &hsp_count);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bxmlobj.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from bxmlobj.c:3:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bxmlobj.c: In function ‘BlastOutputAsnRead’:
bxmlobj.c:96:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   96 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘ParametersAsnRead’:
bxmlobj.c:361:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  361 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:360:12: warning: unused variable ‘isError’ [-Wunused-variable]
  360 |    Boolean isError = FALSE;
      |            ^~~~~~~
bxmlobj.c: In function ‘IterationAsnRead’:
bxmlobj.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  613 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘StatisticsAsnRead’:
bxmlobj.c:829:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  829 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:828:12: warning: unused variable ‘isError’ [-Wunused-variable]
  828 |    Boolean isError = FALSE;
      |            ^~~~~~~
bxmlobj.c: In function ‘HitAsnRead’:
bxmlobj.c:1039:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1039 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘HspAsnRead’:
bxmlobj.c:1244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1244 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:1243:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1243 |    Boolean isError = FALSE;
      |            ^~~~~~~
At top level:
bxmlobj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bxmlobj.c,v 6.11 2006/09/18 15:20:39 bealer Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotseq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from ../include/dotseq.h:63,
                 from dotseq.c:86:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dotseq.c:96:36: warning: missing braces around initializer [-Wmissing-braces]
   96 | static Int4  DOTblosum62[24][24] = {
      |                                    ^
   97 |   4, -1, -2, -2,  0, -1, -1,  0, -2, -1, -1, -1, -1, -2, -1,  1,  0, -3, -2,  0, -2, -1,  0, -4,
      |   {                                                                                            }
   98 |  -1,  5,  0, -2, -3,  1,  0, -2,  0, -3, -2,  2, -1, -3, -2, -1, -1, -3, -2, -3, -1,  0, -1, -4,
      |  {                                                                                             }
   99 |  -2,  0,  6,  1, -3,  0,  0,  0,  1, -3, -3,  0, -2, -3, -2,  1,  0, -4, -2, -3,  3,  0, -1, -4,
      |  {                                                                                             }
  100 |  -2, -2,  1,  6, -3,  0,  2, -1, -1, -3, -4, -1, -3, -3, -1,  0, -1, -4, -3, -3,  4,  1, -1, -4,
      |  {                                                                                             }
  101 |   0, -3, -3, -3,  9, -3, -4, -3, -3, -1, -1, -3, -1, -2, -3, -1, -1, -2, -2, -1, -3, -3, -2, -4,
      |   {                                                                                            }
  102 |  -1,  1,  0,  0, -3,  5,  2, -2,  0, -3, -2,  1,  0, -3, -1,  0, -1, -2, -1, -2,  0,  3, -1, -4,
      |  {                                                                                             }
  103 |  -1,  0,  0,  2, -4,  2,  5, -2,  0, -3, -3,  1, -2, -3, -1,  0, -1, -3, -2, -2,  1,  4, -1, -4,
      |  {                                                                                             }
  104 |   0, -2,  0, -1, -3, -2, -2,  6, -2, -4, -4, -2, -3, -3, -2,  0, -2, -2, -3, -3, -1, -2, -1, -4,
      |   {                                                                                            }
  105 |  -2,  0,  1, -1, -3,  0,  0, -2,  8, -3, -3, -1, -2, -1, -2, -1, -2, -2,  2, -3,  0,  0, -1, -4,
      |  {                                                                                             }
  106 |  -1, -3, -3, -3, -1, -3, -3, -4, -3,  4,  2, -3,  1,  0, -3, -2, -1, -3, -1,  3, -3, -3, -1, -4,
      |  {                                                                                             }
  107 |  -1, -2, -3, -4, -1, -2, -3, -4, -3,  2,  4, -2,  2,  0, -3, -2, -1, -2, -1,  1, -4, -3, -1, -4,
      |  {                                                                                             }
  108 |  -1,  2,  0, -1, -3,  1,  1, -2, -1, -3, -2,  5, -1, -3, -1,  0, -1, -3, -2, -2,  0,  1, -1, -4,
      |  {                                                                                             }
  109 |  -1, -1, -2, -3, -1,  0, -2, -3, -2,  1,  2, -1,  5,  0, -2, -1, -1, -1, -1,  1, -3, -1, -1, -4,
      |  {                                                                                             }
  110 |  -2, -3, -3, -3, -2, -3, -3, -3, -1,  0,  0, -3,  0,  6, -4, -2, -2,  1,  3, -1, -3, -3, -1, -4,
      |  {                                                                                             }
  111 |  -1, -2, -2, -1, -3, -1, -1, -2, -2, -3, -3, -1, -2, -4,  7, -1, -1, -4, -3, -2, -2, -1, -2, -4,
      |  {                                                                                             }
  112 |   1, -1,  1,  0, -1,  0,  0,  0, -1, -2, -2,  0, -1, -2, -1,  4,  1, -3, -2, -2,  0,  0,  0, -4,
      |   {                                                                                            }
  113 |   0, -1,  0, -1, -1, -1, -1, -2, -2, -1, -1, -1, -1, -2, -1,  1,  5, -2, -2,  0, -1, -1,  0, -4,
      |   {                                                                                            }
  114 |  -3, -3, -4, -4, -2, -2, -3, -2, -2, -3, -2, -3, -1,  1, -4, -3, -2, 11,  2, -3, -4, -3, -2, -4,
      |  {                                                                                             }
  115 |  -2, -2, -2, -3, -2, -1, -2, -3,  2, -1, -1, -2, -1,  3, -3, -2, -2,  2,  7, -1, -3, -2, -1, -4,
      |  {                                                                                             }
  116 |   0, -3, -3, -3, -1, -2, -2, -3, -3,  3,  1, -2,  1, -1, -2, -2,  0, -3, -1,  4, -3, -2, -1, -4,
      |   {                                                                                            }
  117 |  -2, -1,  3,  4, -3,  0,  1, -1,  0, -3, -4,  0, -3, -3, -2,  0, -1, -4, -3, -3,  4,  1, -1, -4,
      |  {                                                                                             }
  118 |  -1,  0,  0,  1, -3,  3,  4, -2,  0, -3, -3,  1, -1, -3, -1,  0, -1, -3, -2, -2,  1,  4, -1, -4,
      |  {                                                                                             }
  119 |   0, -1, -1, -1, -2, -1, -1, -1, -1, -1, -1, -1, -1, -1, -2,  0,  0, -2, -1, -1, -1, -1, -1, -4,
      |   {                                                                                            }
  120 |  -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4,  1
      |  {
  121 |  };
      |  }
dotseq.c: In function ‘DOT_BuildPLookup’:
dotseq.c:887:31: warning: variable ‘found_ambig’ set but not used [-Wunused-but-set-variable]
  887 |   Boolean         EXACTMATCH, found_ambig, saved_index = FALSE;
      |                               ^~~~~~~~~~~
dotseq.c:885:19: warning: unused variable ‘threshold’ [-Wunused-variable]
  885 |   Int4            threshold=13; /* one-hit heuristics T must be at least 13*/
      |                   ^~~~~~~~~
dotseq.c:883:19: warning: unused variable ‘index’ [-Wunused-variable]
  883 |   Int4            index = 0;
      |                   ^~~~~
dotseq.c: In function ‘DOT_ComputeHits’:
dotseq.c:1043:47: warning: variable ‘q_end’ set but not used [-Wunused-but-set-variable]
 1043 |   Uint1Ptr                s, subject0, s_end, q_end;
      |                                               ^~~~~
dotseq.c:1041:19: warning: unused variable ‘saved_index’ [-Wunused-variable]
 1041 |   Boolean         saved_index = FALSE;
      |                   ^~~~~~~~~~~
dotseq.c:1039:19: warning: unused variable ‘threshold’ [-Wunused-variable]
 1039 |   Int4            threshold=13;
      |                   ^~~~~~~~~
dotseq.c: In function ‘DOT_SPI_FindBestAlnByDotPlot’:
dotseq.c:2016:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 2016 |    Uint1           strand;
      |                    ^~~~~~
dotseq.c:2015:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2015 |    Int4            start2;
      |                    ^~~~~~
dotseq.c:2014:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2014 |    Int4            start1;
      |                    ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from dotseq.c:87:
dotseq.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dotseq.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: dotseq.c,v 6.14 2006/07/13 17:16:20 bollin Exp $";
      |                   ^~~~~
dotseq.c: In function ‘DOT_BuildHitList’:
dotseq.c:1327:5: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1327 |     DOT_ScoreCount(mip, hitlist, index);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotseq.c:1327:5: warning: ‘hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF spidey.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/spidey.h:102,
                 from spidey.c:263:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
spidey.c: In function ‘SPI_PrintResult’:
spidey.c:1740:21: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1740 |    Int4             offset;
      |                     ^~~~~~
spidey.c: In function ‘SPI_AlnSinglemRNAToPieces’:
spidey.c:2854:19: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
 2854 |    if (spot->from == spot->to == 0)
      |        ~~~~~~~~~~~^~~~~~~~~~~
spidey.c: In function ‘SPI_FillInLastmRNAHoles’:
spidey.c:6299:21: warning: variable ‘internal’ set but not used [-Wunused-but-set-variable]
 6299 |    Boolean          internal;
      |                     ^~~~~~~~
spidey.c: In function ‘SPI_FindBestAlnByDotPlot’:
spidey.c:6445:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 6445 |    Uint1           strand;
      |                    ^~~~~~
spidey.c:6444:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 6444 |    Int4            start2;
      |                    ^~~~~~
spidey.c:6443:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 6443 |    Int4            start1;
      |                    ^~~~~~
spidey.c: In function ‘SPI_ConnectAlnPieces’:
spidey.c:7814:30: warning: variable ‘tmparray’ set but not used [-Wunused-but-set-variable]
 7814 |    SPI_FragPtr          PNTR tmparray;
      |                              ^~~~~~~~
spidey.c:7800:25: warning: variable ‘sfpprev’ set but not used [-Wunused-but-set-variable]
 7800 |    SPI_FragPtr          sfpprev;
      |                         ^~~~~~~
spidey.c: In function ‘SPI_AdjustSplicesInPieces’:
spidey.c:8448:23: warning: variable ‘minus’ set but not used [-Wunused-but-set-variable]
 8448 |    Boolean            minus;
      |                       ^~~~~
spidey.c: In function ‘SPI_CheckMrnaOrder’:
spidey.c:10296:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10296 |                 if ((ival->strand == Seq_strand_plus == ival2->strand
spidey.c:10300:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10300 |                     || (ival->strand == Seq_strand_minus == ival2->strand
spidey.c:10313:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10313 |                 if ((ival->strand == Seq_strand_plus == ival2->strand
spidey.c:10315:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10315 |                     || (ival->strand == Seq_strand_plus == ival2->strand
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/spidey.h:103,
                 from spidey.c:263:
spidey.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
spidey.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: spidey.c,v 6.74 2016/09/02 14:57:38 ucko Exp $";
      |                   ^~~~~
spidey.c: In function ‘SPI_GetProteinFrommRNA’:
spidey.c:9777:14: warning: ‘c3start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9777 |          tmp += c3start;
      |              ^~
spidey.c:9765:14: warning: ‘c1start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9765 |          tmp += c1start;
      |              ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF motif.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/motif.h:45,
                 from motif.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
motif.c: In function ‘MOT_FindPolyA’:
motif.c:86:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
   86 |    Uint1         buf[MOT_WINSIZE];
      |                  ^~~
motif.c: In function ‘MOT_FindKozak’:
motif.c:216:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
  216 |    Uint1         buf[MOT_WINSIZE];
      |                  ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/motif.h:48,
                 from motif.c:47:
motif.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
motif.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: motif.c,v 6.7 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blfmtutl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blfmtutl.c:175:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blfmtutl.c: In function ‘CBStatisticsGetReference’:
blfmtutl.c:593:4: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  593 |  } else
      |    ^~~~
blfmtutl.c:595:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  595 |    add_string_to_bufferEx("Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,", &ret_buffer, &ret_buffer_length, TRUE);
      |    ^~~~~~~~~~~~~~~~~~~~~~
blfmtutl.c: In function ‘BlastPrintTabularResults’:
blfmtutl.c:1281:16: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1281 |                for (index=1; ssp->next; index++)
      |                ^~~
blfmtutl.c:1283:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1283 |                    num_gap_opens = index / 2;
      |                    ^~~~~~~~~~~~~
At top level:
blfmtutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blfmtutl.c,v 1.44 2012/10/10 14:05:50 fongah2 Exp $";
      |                   ^~~~~
blfmtutl.c: In function ‘BlastPrintTabularResults’:
blfmtutl.c:1117:13: warning: ‘alignments_count’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1117 |          if (--alignments_count < 0)
      |             ^
blfmtutl.c:1353:19: warning: ‘s_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1353 |             s_end += s_shift;
      |             ~~~~~~^~~~~~~~~~
blfmtutl.c:1352:21: warning: ‘s_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1352 |             s_start += s_shift;
      |             ~~~~~~~~^~~~~~~~~~
blfmtutl.c:1351:19: warning: ‘q_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1351 |             q_end += q_shift;
      |             ~~~~~~^~~~~~~~~~
blfmtutl.c:1350:21: warning: ‘q_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1350 |             q_start += q_shift;
      |             ~~~~~~~~^~~~~~~~~~
blfmtutl.c:1081:24: warning: ‘query_id’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1081 |          while (slp && SeqIdComp(query_id, SeqLocId(slp)) != SIC_YES)
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blfmtutl.c: In function ‘BlastSetUserErrorString’:
blfmtutl.c:1413:26: warning: ‘title’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1413 |  CharPtr buf_start, ptr, title;
      |                          ^~~~~
rm -f libncbitool.a
ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbitool.a ../lib
ranlib ../lib/libncbitool.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF compo_heap.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smith_waterman.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF redo_alignment.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c
rm -f libblastcompadj.a
ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblastcompadj.a ../lib
ranlib ../lib/libblastcompadj.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontg.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontmb.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontmb.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontt.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pictogif.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from pictogif.c:50:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontl.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfonts.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfonts.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -DWIN_GIF -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbidrwg.c: In function ‘Nlm_ClearRgn’:
ncbidrwg.c:6081:16: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable]
 6081 |   Nlm_RgnTool  ntool;
      |                ^~~~~
ncbidrwg.c: In function ‘Nlm_DiffRgn’:
ncbidrwg.c:6273:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable]
 6273 |   Nlm_RgnTool  ntool3;
      |                ^~~~~~
ncbidrwg.c:6272:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6272 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6271:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6271 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_XorRgn’:
ncbidrwg.c:6324:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable]
 6324 |   Nlm_RgnTool  ntool3;
      |                ^~~~~~
ncbidrwg.c:6323:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6323 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6322:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6322 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_EqualRgn’:
ncbidrwg.c:6353:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6353 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6352:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6352 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_EmptyRgn’:
ncbidrwg.c:6381:17: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable]
 6381 |   Nlm_RgnTool   ntool;
      |                 ^~~~~
ncbidrwg.c: In function ‘Nlm_CopyPixmap’:
ncbidrwg.c:7040:25: warning: variable ‘height’ set but not used [-Wunused-but-set-variable]
 7040 |   Nlm_Int2              height;
      |                         ^~~~~~
ncbidrwg.c:7039:25: warning: variable ‘width’ set but not used [-Wunused-but-set-variable]
 7039 |   Nlm_Int2              width;
      |                         ^~~~~
In file included from ../include/ncbi.h:58,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
ncbidrwg.c: In function ‘Nlm_SectRect.part.0’:
../include/ncbistd.h:251:30: warning: ‘rect2.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  251 | #define MIN(a,b) ((a)>(b)?(b):(a))
      |                              ^
ncbidrwg.c:4276:17: note: ‘rect2.bottom’ was declared here
 4276 |   Nlm_RecT      rect2;
      |                 ^~~~~
In file included from ../include/ncbi.h:58,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
../include/ncbistd.h:251:30: warning: ‘rect2.right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  251 | #define MIN(a,b) ((a)>(b)?(b):(a))
      |                              ^
ncbidrwg.c:4276:17: note: ‘rect2.right’ was declared here
 4276 |   Nlm_RecT      rect2;
      |                 ^~~~~
In file included from ../include/ncbi.h:58,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
../include/ncbistd.h:255:31: warning: ‘rect2.top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                               ^
ncbidrwg.c:4276:17: note: ‘rect2.top’ was declared here
 4276 |   Nlm_RecT      rect2;
      |                 ^~~~~
In file included from ../include/ncbi.h:58,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
../include/ncbistd.h:255:31: warning: ‘rect2.left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                               ^
ncbidrwg.c:4276:17: note: ‘rect2.left’ was declared here
 4276 |   Nlm_RecT      rect2;
      |                 ^~~~~
In file included from ../include/ncbi.h:58,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
../include/ncbistd.h:251:30: warning: ‘rect1.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  251 | #define MIN(a,b) ((a)>(b)?(b):(a))
      |                              ^
ncbidrwg.c:4275:17: note: ‘rect1.bottom’ was declared here
 4275 |   Nlm_RecT      rect1;
      |                 ^~~~~
In file included from ../include/ncbi.h:58,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
../include/ncbistd.h:251:30: warning: ‘rect1.right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  251 | #define MIN(a,b) ((a)>(b)?(b):(a))
      |                              ^
ncbidrwg.c:4275:17: note: ‘rect1.right’ was declared here
 4275 |   Nlm_RecT      rect1;
      |                 ^~~~~
In file included from ../include/ncbi.h:58,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
../include/ncbistd.h:255:31: warning: ‘rect1.top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                               ^
ncbidrwg.c:4275:17: note: ‘rect1.top’ was declared here
 4275 |   Nlm_RecT      rect1;
      |                 ^~~~~
In file included from ../include/ncbi.h:58,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
../include/ncbistd.h:255:31: warning: ‘rect1.left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                               ^
ncbidrwg.c:4275:17: note: ‘rect1.left’ was declared here
 4275 |   Nlm_RecT      rect1;
      |                 ^~~~~
ncbidrwg.c: In function ‘s_DoQuadrant’:
ncbidrwg.c:5619:10: warning: ‘rr.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5619 |   ry = rr.bottom - rr.top;
      |        ~~^~~~~~~
ncbidrwg.c:5618:10: warning: ‘rr.right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5618 |   rx = rr.right  - rr.left;
      |        ~~^~~~~~
ncbidrwg.c:5619:22: warning: ‘rr.top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5619 |   ry = rr.bottom - rr.top;
      |                    ~~^~~~
ncbidrwg.c:5618:22: warning: ‘rr.left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5618 |   rx = rr.right  - rr.left;
      |                    ~~^~~~~
ncbidrwg.c: In function ‘Nlm_EraseRect.part.0’:
ncbidrwg.c:4471:5: warning: ‘rtool.bottom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4471 |     gdImageFilledRectangle(Nlm_currentGIF, rtool.left, rtool.top,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 4472 |                            rtool.right, rtool.bottom, 0);
      |                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:4471:5: warning: ‘rtool.right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
ncbidrwg.c:4471:5: warning: ‘rtool.top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
ncbidrwg.c:4471:5: warning: ‘rtool.left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
ncbidrwg.c: In function ‘Nlm_SelectFont.part.0’:
ncbidrwg.c:500:12: warning: ‘fdata.print’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  500 |     *fdata = *fp;
      |     ~~~~~~~^~~~~
ncbidrwg.c:2875:17: note: ‘fdata.print’ was declared here
 2875 |   Nlm_FontData  fdata;
      |                 ^~~~~
ncbidrwg.c:2912:15: warning: ‘fdata.fontspec.size’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2912 |     } else if (fdata.fontspec.size >= 10) {
      |               ^
ncbidrwg.c: In function ‘Nlm_ResetDrawingTools’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_Black’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_Red’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_Green’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_Blue’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_Cyan’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_Magenta’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_Yellow’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_White’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_Gray’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_LtGray’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_DkGray’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c:1360:7: note: ‘i’ was declared here
 1360 |   int i;
      |       ^
ncbidrwg.c: In function ‘Nlm_SelectColor’:
ncbidrwg.c:1319:19: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1319 |   Nlm_curGIFColor = (int)Nlm_GetColorRGB ( red, green, blue );
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ncbidrwg.c: In function ‘Nlm_GetColorRGB’:
ncbidrwg.c:1373:10: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1373 |   return (Nlm_Uint4)i;
      |          ^~~~~~~~~~~~
rm -f libvibgif.a
ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibgif.a ../lib
ranlib ../lib/libvibgif.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF algorend.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/viewer3d.h:125,
                 from algorend.c:584:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
algorend.c: In function ‘ColorFromSS’:
algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable]
  893 |     Int2 rsult = 0;
      |          ^~~~~
algorend.c: In function ‘Cn3D_RenWire’:
algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1400 |     PMLD pmldThis = NULL;
      |          ^~~~~~~~
algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1399 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1398 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘Cn3D_ColSeqCons’:
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1795 |     pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
      |                        ^
algorend.c: In function ‘RenderObject’:
algorend.c:3135:25: warning: variable ‘fZTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |                         ^~~~
algorend.c:3135:19: warning: variable ‘fYTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |                   ^~~~
algorend.c:3135:13: warning: variable ‘fXTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |             ^~~~
algorend.c:3134:29: warning: variable ‘fZFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |                             ^~~~~~
algorend.c:3134:21: warning: variable ‘fYFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |                     ^~~~~~
algorend.c:3134:13: warning: variable ‘fXFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |             ^~~~~~
algorend.c: In function ‘RenderLabel’:
algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 3393 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘RenderBond’:
algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3554 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderHalfWormBond’:
algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3673 |     PMSD pmsdParent;
      |          ^~~~~~~~~~
algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable]
 3671 |     PMAD pmad0, pmad1, pmad2, pmad3;
      |                        ^~~~~
algorend.c: In function ‘RenderAnAtom’:
algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable]
 3758 |     PMAD pmadFrom = NULL;
      |          ^~~~~~~~
algorend.c:3757:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3757 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderAllAtom’:
algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable]
 3829 |     int iMenu;
      |         ^~~~~
algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 3815 |     PVNMB pvnmbThis = NULL;
      |           ^~~~~~~~~
algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
 3811 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘RenderGraph’:
algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable]
 4498 |     Byte bReservedThis = 0;
      |          ^~~~~~~~~~~~~
algorend.c: In function ‘LabelChainTermini’:
algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable]
 4772 |         PMBD pmbdThis = NULL;
      |              ^~~~~~~~
algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 4771 |         PVNMB pvnmbThis = NULL;
      |               ^~~~~~~~~
algorend.c: In function ‘RenderMolecule’:
algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable]
 4871 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘fnARLoop’:
algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 5556 |     Int2 iTest;
      |          ^~~~~
algorend.c: In function ‘AlgorithmicRendering’:
algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable]
 5684 |     Int2 i = 0;
      |          ^
algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable]
 5683 |     Int2 Cn3d_LayerNow_sofar = 0;
      |          ^~~~~~~~~~~~~~~~~~~
algorend.c: In function ‘Do3DOrigin’:
algorend.c:5756:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 5756 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c:5751:13: warning: variable ‘fTo’ set but not used [-Wunused-but-set-variable]
 5751 |     FloatLo fTo[3];
      |             ^~~
algorend.c:5750:13: warning: variable ‘fFrom’ set but not used [-Wunused-but-set-variable]
 5750 |     FloatLo fFrom[3];
      |             ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function]
 2265 | static void LabelGroupOnOffProc(GrouP g)
      |             ^~~~~~~~~~~~~~~~~~~
algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable]
  717 | static Boolean Cn3d_CopyToNode = FALSE;
      |                ^~~~~~~~~~~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘RenderLabel’:
../include/pictur3d.h:235:27: warning: ‘iX’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:10: note: ‘iX’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |          ^~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:235:27: warning: ‘iY’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:14: note: ‘iY’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |              ^~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:235:27: warning: ‘iZ’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:18: note: ‘iZ’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |                  ^~
algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3448 |         fZCen += fZt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3447 |         fYCen += fYt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3446 |         fXCen += fXt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:77: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                                      ~~~~~~~^~~~~~~
algorend.c:3450:41: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3450 |         fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c: In function ‘MasterChangeRenderProc.constprop’:
algorend.c:1316:33: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1316 |             pars->SolventRender = k;
      |             ~~~~~~~~~~~~~~~~~~~~^~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘RenderObject’:
../include/pictur3d.h:234:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:10: note: ‘iXFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:18: note: ‘iYFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:26: note: ‘iZFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:10: note: ‘iXTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:16: note: ‘iYTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:22: note: ‘iZTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘Do3DOrigin’:
../include/pictur3d.h:232:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:10: note: ‘iXFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:18: note: ‘iYFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:26: note: ‘iZFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:10: note: ‘iXTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:16: note: ‘iYTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:22: note: ‘iZTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsel.c:60:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dopen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dopen.c:394:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dopen.c: In function ‘Cn3D_OpenStart’:
cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable]
  722 |     Int4 iBioseq = 0;
      |          ^~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1000 |             PDNML pdnmlThis = NULL;
      |                   ^~~~~~~~~
cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable]
  989 |     BiostrucAlignSeqPtr pbsasThis = NULL;
      |                         ^~~~~~~~~
cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’:
cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 1310 |     ButtoN b;
      |            ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dopen.c:413:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable]
  431 | static ButtoN Cn3D_bOpenBrowse;
      |               ^~~~~~~~~~~~~~~~
cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable]
  430 | static WindoW Cn3D_wOpen;
      |               ^~~~~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  529 |         SAM_ReplaceGI(salp);
      |         ^~~~~~~~~~~~~~~~~~~
cn3dopen.c:513:15: note: ‘salp’ was declared here
  513 |     SeqAlign *salp;
      |               ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dsave.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dsave.c:157:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportAsnNow’:
cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
  375 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable]
  372 |     BiostrucFeaturePtr pbsfThis;
      |                        ^~~~~~~~
cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  366 |     PMSD pmsdSlave = NULL, pmsdMaster = NULL;
      |          ^~~~~~~~~
cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable]
  362 |     Boolean iCn3d = TRUE, FirstSlave = FALSE;
      |                           ^~~~~~~~~~
cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  357 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveBiostruc’:
cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  524 |     ButtoN b;
      |            ^
cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  523 |     GrouP gMS;
      |           ^~~
cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  518 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportDictNow’:
cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  598 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable]
  596 |     Int4 iCount = 0;
      |          ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveDictionary’:
cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  629 |     ButtoN b;
      |            ^
cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  624 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_SaveSub’:
cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  688 |     IteM i;
      |          ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dsave.c:171:
cn3dsave.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable]
  184 | static ButtoN Cn3D_bFeatOn;
      |               ^~~~~~~~~~~~
In file included from cn3dsave.c:165:
../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  119 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable]
  118 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  117 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmime.h12";
      |               ^~~~~~~~~~~
cn3dsave.c: In function ‘Cn3D_GetSubSet’:
cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  289 |             isep->next = SeqEntryNew();
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dxprt.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportPDB’:
cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  209 |     ButtoN b;
      |            ^
cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  208 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  203 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportKin’:
cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  381 |     ButtoN b;
      |            ^
cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  380 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  375 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportSub’:
cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  513 |     IteM i;
      |          ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dwin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dwin.c:647:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces]
  733 | {
      | ^
  734 |   255, 255, 255, /* default     0 */
      |   {            }
  735 |   255,  20, 147, /* hotpink     1 */
      |   {            }
  736 |   255,   0, 255, /* magenta     2 */
      |   {            }
  737 |   155, 48, 255, /* purple      3 */
      |   {           }
  738 |     0,   0, 255, /* blue        4 */
      |     {          }
  739 |    30, 144, 255, /* sky         5 */
      |    {           }
  740 |     0, 255, 255, /* cyan        6 */
      |     {          }
  741 |     0, 255, 127, /* sea         7 */
      |     {          }
  742 |     0, 255,   0, /* green       8 */
      |     {          }
  743 |   255, 255,   0, /* yellow      9 */
      |   {            }
  744 |   255, 165,   0, /* gold       10 */
      |   {            }
  745 |   255,  69,   0, /* orange     11 */
      |   {            }
  746 |   255,   0,   0, /* red        12 */
      |   {            }
  747 |   255, 114,  86, /* pink       13 */
      |   {            }
  748 |   255, 174, 185, /* pinktint   14 */
      |   {            }
  749 |   255, 255, 255, /* white      15 */
      |   {            }
  750 |     0,   0,   0, /* black      16 */
      |     {          }
  751 |   176, 226, 255, /* bluetint   17 */
      |   {            }
  752 |   154, 255, 154, /* greentint  18 */
      |   {            }
  753 |   255, 236, 139, /* yellowtint 19 */
      |   {            }
  754 |   125, 125, 125, /* gray       20 */
      |   {            }
  755 |   139,  87,  66, /* brown      21 */
      |   {            }
  756 |   255,   0,   0, /* perm colors 22: red */
      |   {            }
  757 |     0, 255,   0, /* perm colors 23: green */
      |     {          }
  758 |   255,   0, 255, /* perm colors 24: magenta */
      |   {            }
  759 |    30, 144, 255, /* perm colors 25: sky */
      |    {           }
  760 |   155, 48, 255, /* perm colors 26: purple */
      |   {           }
  761 |     0, 255,   0, /* SS colors 27: helix, green */
      |     {          }
  762 |   255, 165,   0, /* SS colors 28: strand, gold */
      |   {            }
  763 |   255,  69,   0, /* SS colors 29: turn, orange */
      |   {            }
  764 |     0, 255, 255, /* SS colors 30: coil, cyan */
      |     {          }
  765 |   255, 255,   0, /* highlight colors 31: yellow */
      |   {            }
  766 |     0,   0,   0, /* background colors 32: black */
      |     {          }
  767 |   160,  82,  45, /* sienna 33 */
      |   {            }
  768 |   240, 230, 140, /* khaki 34 */
      |   {            }
  769 |   171, 130, 255, /* light purple 35 */
      |   {            }
  770 |   255, 200,   0, /* orange yellow 36 */
      |   {            }
  771 |   117, 128, 160, /* 37 */
      |   {            }
  772 |     5,  53, 239, /* 38 */
      |     {          }
  773 |    27,  62, 255, /* 39 */
      |    {           }
  774 |    84, 110, 203, /* 40 */
      |    {           }
  775 |   216,  77,  84, /* 41 */
      |   {            }
  776 |   125, 128, 135, /* 42 */
      |   {            }
  777 |   237,  29,  61, /* 43 */
      |   {            }
  778 |   184, 118, 120, /* 44 */
      |   {            }
  779 |   155,   9,   0, /* 45 */
      |   {            }
  780 |   155, 119, 107, /* 46 */
      |   {            }
  781 |    80, 110, 196, /* 47 */
      |    {           }
  782 |   122, 127, 157, /* 48 */
      |   {            }
  783 |    50,  85, 241, /* 49 */
      |    {           }
  784 |   201,  93,  91, /* 50 */
      |   {            }
  785 |   254,   0,   5, /* 51 */
      |   {            }
  786 |   155, 137, 133, /* 52 */
      |   {            }
  787 |     3,  53, 246  /* 53 */
      |     {
  788 | };
      | }
cn3dwin.c: In function ‘Viewer3DGroups’:
cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1728 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Viewer3DViewer’:
cn3dwin.c:1784:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1784 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Cn3D_AlignEdit’:
cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable]
 1936 |     Int2 iCount = 0;
      |          ^~~~~~
cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable]
 1935 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable]
 1933 |     SeqAlignPtr salp = NULL;
      |                 ^~~~
cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable]
 1931 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
 1930 |     PDNMS pdnmsSlave = NULL;
      |           ^~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function]
 1626 | static void HLmolecule_MA(MAPtr ma,
      |             ^~~~~~~~~~~~~
cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function]
 1428 | static void HLatom_MA(MAPtr ma,
      |             ^~~~~~~~~
cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function]
  929 | static void Cn3D_MoveCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function]
  922 | static void Cn3D_ZoomCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable]
  688 | static IteM Cn3D_iModelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable]
  682 | static IteM Cn3D_iLabelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dentr.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsg.c:254:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’:
cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable]
  593 |     OMUserDataPtr omudp = NULL;
      |                   ^~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmatn.c:173:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmatn.c: In function ‘FindMM’:
cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable]
  217 |     PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
      |                             ^~~~~~~~~~~~~~
cn3dmatn.c: In function ‘DoMediaHL’:
cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable]
  249 |     Byte MainAtom = 0;
      |          ^~~~~~~~
cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable]
  247 |     PALD paldThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable]
  246 |     PVNAL pvnalThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable]
  245 |     PMAD pmadThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
  244 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’:
cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  372 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’:
cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable]
  353 |     PDNMG pdnmgThis = NULL;
      |           ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckHighlighted’:
cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  364 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’:
cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable]
  508 |     PMGD pmgd = NULL;
      |          ^~~~
cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
  507 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  506 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘fnAlignList’:
cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |                         ^~~~~~~~
cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |           ^~~~~~~~
cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable]
  995 |     SeqIdPtr sipThis = NULL;
      |              ^~~~~~~
cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  993 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’:
cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
 1065 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 1064 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SetResidueVisibilities’:
cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable]
 1201 |     PVNMO pvnmoThis = NULL;
      |           ^~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ListDomainProc’:
cn3dmodl.c:413:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                                  ^~
cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                              ^~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmodl.c:410:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  410 |             sprintf(MolName, "%4s  %2s", domaindata[iCount]->pcPDBName,
      |                                  ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dshim.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dshim.c:131:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmesh.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  103 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmesh.c: In function ‘Cn3D_OpenMesh’:
cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  151 |     ButtoN b;
      |            ^
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |     fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge),
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |            &(Mesh.NumTri));
      |            ~~~~~~~~~~~~~~~
cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |         fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  120 |                &(Mesh.Vertices[i].Vertex[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  121 |                &(Mesh.Vertices[i].Vertex[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  122 |                &(Mesh.Vertices[i].Vertex[2]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  123 |                &(Mesh.Vertices[i].Normal[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  124 |                &(Mesh.Vertices[i].Normal[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |                &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  126 |                &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  129 |         fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  130 |                &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  133 |         fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  134 |                &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  135 |                &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  136 |                &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                &lDummy);
      |                ~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dstyl.c:72:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’:
cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
  459 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’:
cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable]
  641 |     PARS parsThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
  640 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’:
cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable]
  866 |     Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
      |                                            ^~~~~
cn3dstyl.c: In function ‘lFeatureEditedAction’:
cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable]
 1136 |     Int4 val = 0;
      |          ^~~
cn3dstyl.c: In function ‘bFeatureMoveAction’:
cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1153 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘bFeatureEditAction’:
cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1176 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ModelControls’:
cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable]
 1364 |     PrompT ppt12, ppt13, ppt14;
      |                   ^~~~~
cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                    ^~~~
cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |            ^~~~
cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’:
cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable]
 1728 |     Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
      |                              ^~~~~~~~~~~~~~
cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable]
 1725 |     Int2 iMol = 0, iMolCurrent = 0;
      |                    ^~~~~~~~~~~
cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’:
cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                                            ^~~~~~~~~~
cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                         ^~~~~~~~~~
cn3dstyl.c: In function ‘GetUserDefinedFeature’:
cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
 2196 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’:
cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable]
 2551 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 2549 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable]
 2548 |     PDNMM pdnmmHead = NULL;
      |           ^~~~~~~~~
cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 2547 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function]
  456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable]
  149 | static ButtoN bResetFeatureTitle;
      |               ^~~~~~~~~~~~~~~~~~
cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable]
  144 | static PopuP Cn3D_pupModelStyleItem;
      |              ^~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c: In function ‘CopyLocation’:
cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  496 |     rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqcons.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from seqcons.c:112:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from seqcons.c:115:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from seqcons.c:116:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=]
  263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] =
      |                   ^~~~~~~~~~~~~~~~~~
seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’:
seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                 ~~~~~~~~~~^~~~~~~~~~~
seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                                         ~~~~~~~~~~^~~~~~~~~~~
rm -f libncbicn3d.a
ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicn3d.a ../lib
ranlib ../lib/libncbicn3d.a
mv algorend.o algorend.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/shim3d.h:153,
                 from algorend.c:582:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
algorend.c: In function ‘Cn3D_SetOGLFont’:
algorend.c:791:24: warning: unused variable ‘currentUnderlined’ [-Wunused-variable]
  791 |                        currentUnderlined = FALSE;
      |                        ^~~~~~~~~~~~~~~~~
algorend.c:790:45: warning: unused variable ‘currentItalic’ [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                                             ^~~~~~~~~~~~~
algorend.c:790:24: warning: unused variable ‘currentBold’ [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                        ^~~~~~~~~~~
algorend.c:789:40: warning: unused variable ‘currentSize’ [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                                        ^~~~~~~~~~~
algorend.c:789:21: warning: unused variable ‘currentIndex’ [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                     ^~~~~~~~~~~~
algorend.c: In function ‘ColorFromSS’:
algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable]
  893 |     Int2 rsult = 0;
      |          ^~~~~
algorend.c: In function ‘Cn3D_RenWire’:
algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1400 |     PMLD pmldThis = NULL;
      |          ^~~~~~~~
algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1399 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1398 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘Cn3D_ColSeqCons’:
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1795 |     pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
      |                        ^
algorend.c: In function ‘MasterChangeLabelsProc’:
algorend.c:2075:44: warning: unused variable ‘TopOn’ [-Wunused-variable]
 2075 |     Boolean NumOn, NameOn, PDBOn, WhiteOn, TopOn;
      |                                            ^~~~~
algorend.c:2073:13: warning: unused variable ‘k’ [-Wunused-variable]
 2073 |     Int2 i, k, nameval;
      |             ^
algorend.c: In function ‘ResetLabelCtrls’:
algorend.c:2272:25: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
 2272 |     Int2 i, val, style, size, termStyle;
      |                         ^~~~
algorend.c: In function ‘LabelControls’:
algorend.c:2434:19: warning: variable ‘ppt11’ set but not used [-Wunused-but-set-variable]
 2434 |     PrompT ppt10, ppt11;
      |                   ^~~~~
algorend.c:2431:36: warning: unused variable ‘ppt7’ [-Wunused-variable]
 2431 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt7, ppt8, ppt9;
      |                                    ^~~~
algorend.c: In function ‘Cn3D_SetQualityFromAppParams’:
algorend.c:2649:9: warning: unused variable ‘i’ [-Wunused-variable]
 2649 |     int i;
      |         ^
algorend.c: In function ‘OGL_Quality’:
algorend.c:2769:23: warning: unused variable ‘q’ [-Wunused-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                       ^
algorend.c:2769:20: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                    ^
algorend.c:2769:16: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                ^~
algorend.c: In function ‘RenderControls’:
algorend.c:2893:12: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 2893 |     PrompT ppt5;
      |            ^~~~
algorend.c: In function ‘RenderObject’:
algorend.c:3138:10: warning: unused variable ‘iCylRadius’ [-Wunused-variable]
 3138 |     Int4 iCylRadius;
      |          ^~~~~~~~~~
algorend.c:3137:22: warning: unused variable ‘iZTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
algorend.c:3137:16: warning: unused variable ‘iYTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
algorend.c:3137:10: warning: unused variable ‘iXTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
algorend.c:3136:26: warning: unused variable ‘iZFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
algorend.c:3136:18: warning: unused variable ‘iYFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
algorend.c:3136:10: warning: unused variable ‘iXFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
algorend.c:3133:10: warning: unused variable ‘i’ [-Wunused-variable]
 3133 |     Int4 i = 0;
      |          ^
algorend.c: In function ‘RenderLabel’:
algorend.c:3394:10: warning: variable ‘paldPrim’ set but not used [-Wunused-but-set-variable]
 3394 |     PALD paldPrim = NULL;
      |          ^~~~~~~~
algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 3393 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c:3389:18: warning: unused variable ‘iZ’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |                  ^~
algorend.c:3389:14: warning: unused variable ‘iY’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |              ^~
algorend.c:3389:10: warning: unused variable ‘iX’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |          ^~
algorend.c: In function ‘RenderBond’:
algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3554 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderHalfWormBond’:
algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3673 |     PMSD pmsdParent;
      |          ^~~~~~~~~~
algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable]
 3671 |     PMAD pmad0, pmad1, pmad2, pmad3;
      |                        ^~~~~
algorend.c: In function ‘RenderAnAtom’:
algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable]
 3758 |     PMAD pmadFrom = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘RenderAllAtom’:
algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable]
 3829 |     int iMenu;
      |         ^~~~~
algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 3815 |     PVNMB pvnmbThis = NULL;
      |           ^~~~~~~~~
algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
 3811 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘RenderGraph’:
algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable]
 4498 |     Byte bReservedThis = 0;
      |          ^~~~~~~~~~~~~
algorend.c: In function ‘LabelChainTermini’:
algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable]
 4772 |         PMBD pmbdThis = NULL;
      |              ^~~~~~~~
algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 4771 |         PVNMB pvnmbThis = NULL;
      |               ^~~~~~~~~
algorend.c: In function ‘RenderMolecule’:
algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable]
 4871 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘fnARLoop’:
algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 5556 |     Int2 iTest;
      |          ^~~~~
algorend.c: In function ‘AlgorithmicRendering’:
algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable]
 5684 |     Int2 i = 0;
      |          ^
algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable]
 5683 |     Int2 Cn3d_LayerNow_sofar = 0;
      |          ^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
algorend.c:789:21: warning: ‘currentIndex’ defined but not used [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                     ^~~~~~~~~~~~
algorend.c:789:40: warning: ‘currentSize’ defined but not used [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                                        ^~~~~~~~~~~
algorend.c:790:24: warning: ‘currentBold’ defined but not used [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                        ^~~~~~~~~~~
algorend.c:790:45: warning: ‘currentItalic’ defined but not used [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                                             ^~~~~~~~~~~~~
algorend.c:791:24: warning: ‘currentUnderlined’ defined but not used [-Wunused-variable]
  791 |                        currentUnderlined = FALSE;
      |                        ^~~~~~~~~~~~~~~~~
algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function]
 2265 | static void LabelGroupOnOffProc(GrouP g)
      |             ^~~~~~~~~~~~~~~~~~~
algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable]
  717 | static Boolean Cn3d_CopyToNode = FALSE;
      |                ^~~~~~~~~~~~~~~
algorend.c: In function ‘MasterChangeRenderProc’:
algorend.c:1295:29: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1295 |             pars->PBBRender = k;
      |             ~~~~~~~~~~~~~~~~^~~
algorend.c: In function ‘RenderLabel’:
algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3448 |         fZCen += fZt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3447 |         fYCen += fYt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3446 |         fXCen += fXt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3438:30: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3438 |         fYCen = fYTo + (fYTo - fYFrom) / 2.0;
      |                        ~~~~~~^~~~~~~~~
algorend.c:3437:30: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3437 |         fXCen = fXTo + (fXTo - fXFrom) / 2.0;
      |                        ~~~~~~^~~~~~~~~
algorend.c:3449:58: warning: ‘fZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                   ~~~~~~~^~~~~~~~~
algorend.c:3438:30: warning: ‘fYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3438 |         fYCen = fYTo + (fYTo - fYFrom) / 2.0;
      |                        ~~~~~~^~~~~~~~~
algorend.c:3437:30: warning: ‘fXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3437 |         fXCen = fXTo + (fXTo - fXFrom) / 2.0;
      |                        ~~~~~~^~~~~~~~~
mv algorend.o algorend.glo
mv algorend.tmp algorend.o
mv cn3dmsel.o cn3dmsel.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsel.c:60:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv cn3dmsel.o cn3dmsel.glo
mv cn3dmsel.tmp cn3dmsel.o
mv cn3dopen.o cn3dopen.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dopen.c:394:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dopen.c: In function ‘Cn3D_OpenStart’:
cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable]
  722 |     Int4 iBioseq = 0;
      |          ^~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1000 |             PDNML pdnmlThis = NULL;
      |                   ^~~~~~~~~
cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable]
  989 |     BiostrucAlignSeqPtr pbsasThis = NULL;
      |                         ^~~~~~~~~
cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’:
cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 1310 |     ButtoN b;
      |            ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dopen.c:413:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable]
  431 | static ButtoN Cn3D_bOpenBrowse;
      |               ^~~~~~~~~~~~~~~~
cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable]
  430 | static WindoW Cn3D_wOpen;
      |               ^~~~~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  529 |         SAM_ReplaceGI(salp);
      |         ^~~~~~~~~~~~~~~~~~~
cn3dopen.c:513:15: note: ‘salp’ was declared here
  513 |     SeqAlign *salp;
      |               ^~~~
mv cn3dopen.o cn3dopen.glo
mv cn3dopen.tmp cn3dopen.o
mv cn3dsave.o cn3dsave.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dsave.c:157:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dsave.c: In function ‘Cn3D_AddMatrix’:
cn3dsave.c:206:41: warning: unused variable ‘bsfsp_new’ [-Wunused-variable]
  206 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_new = NULL;
      |                                         ^~~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportAsnNow’:
cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
  375 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable]
  372 |     BiostrucFeaturePtr pbsfThis;
      |                        ^~~~~~~~
cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  366 |     PMSD pmsdSlave = NULL, pmsdMaster = NULL;
      |          ^~~~~~~~~
cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable]
  362 |     Boolean iCn3d = TRUE, FirstSlave = FALSE;
      |                           ^~~~~~~~~~
cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  357 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveBiostruc’:
cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  524 |     ButtoN b;
      |            ^
cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  523 |     GrouP gMS;
      |           ^~~
cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  518 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportDictNow’:
cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  598 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable]
  596 |     Int4 iCount = 0;
      |          ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveDictionary’:
cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  629 |     ButtoN b;
      |            ^
cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  624 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_SaveSub’:
cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  688 |     IteM i;
      |          ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dsave.c:171:
cn3dsave.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable]
  184 | static ButtoN Cn3D_bFeatOn;
      |               ^~~~~~~~~~~~
In file included from cn3dsave.c:165:
../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  119 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable]
  118 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  117 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmime.h12";
      |               ^~~~~~~~~~~
cn3dsave.c: In function ‘Cn3D_GetSubSet’:
cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  289 |             isep->next = SeqEntryNew();
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~
mv cn3dsave.o cn3dsave.glo
mv cn3dsave.tmp cn3dsave.o
mv cn3dxprt.o cn3dxprt.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dxprt.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportPDB’:
cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  209 |     ButtoN b;
      |            ^
cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  208 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  203 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportKin’:
cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  381 |     ButtoN b;
      |            ^
cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  380 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  375 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportSub’:
cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  513 |     IteM i;
      |          ^
mv cn3dxprt.o cn3dxprt.glo
mv cn3dxprt.tmp cn3dxprt.o
mv cn3dwin.o cn3dwin.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dwin.c:647:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces]
  733 | {
      | ^
  734 |   255, 255, 255, /* default     0 */
      |   {            }
  735 |   255,  20, 147, /* hotpink     1 */
      |   {            }
  736 |   255,   0, 255, /* magenta     2 */
      |   {            }
  737 |   155, 48, 255, /* purple      3 */
      |   {           }
  738 |     0,   0, 255, /* blue        4 */
      |     {          }
  739 |    30, 144, 255, /* sky         5 */
      |    {           }
  740 |     0, 255, 255, /* cyan        6 */
      |     {          }
  741 |     0, 255, 127, /* sea         7 */
      |     {          }
  742 |     0, 255,   0, /* green       8 */
      |     {          }
  743 |   255, 255,   0, /* yellow      9 */
      |   {            }
  744 |   255, 165,   0, /* gold       10 */
      |   {            }
  745 |   255,  69,   0, /* orange     11 */
      |   {            }
  746 |   255,   0,   0, /* red        12 */
      |   {            }
  747 |   255, 114,  86, /* pink       13 */
      |   {            }
  748 |   255, 174, 185, /* pinktint   14 */
      |   {            }
  749 |   255, 255, 255, /* white      15 */
      |   {            }
  750 |     0,   0,   0, /* black      16 */
      |     {          }
  751 |   176, 226, 255, /* bluetint   17 */
      |   {            }
  752 |   154, 255, 154, /* greentint  18 */
      |   {            }
  753 |   255, 236, 139, /* yellowtint 19 */
      |   {            }
  754 |   125, 125, 125, /* gray       20 */
      |   {            }
  755 |   139,  87,  66, /* brown      21 */
      |   {            }
  756 |   255,   0,   0, /* perm colors 22: red */
      |   {            }
  757 |     0, 255,   0, /* perm colors 23: green */
      |     {          }
  758 |   255,   0, 255, /* perm colors 24: magenta */
      |   {            }
  759 |    30, 144, 255, /* perm colors 25: sky */
      |    {           }
  760 |   155, 48, 255, /* perm colors 26: purple */
      |   {           }
  761 |     0, 255,   0, /* SS colors 27: helix, green */
      |     {          }
  762 |   255, 165,   0, /* SS colors 28: strand, gold */
      |   {            }
  763 |   255,  69,   0, /* SS colors 29: turn, orange */
      |   {            }
  764 |     0, 255, 255, /* SS colors 30: coil, cyan */
      |     {          }
  765 |   255, 255,   0, /* highlight colors 31: yellow */
      |   {            }
  766 |     0,   0,   0, /* background colors 32: black */
      |     {          }
  767 |   160,  82,  45, /* sienna 33 */
      |   {            }
  768 |   240, 230, 140, /* khaki 34 */
      |   {            }
  769 |   171, 130, 255, /* light purple 35 */
      |   {            }
  770 |   255, 200,   0, /* orange yellow 36 */
      |   {            }
  771 |   117, 128, 160, /* 37 */
      |   {            }
  772 |     5,  53, 239, /* 38 */
      |     {          }
  773 |    27,  62, 255, /* 39 */
      |    {           }
  774 |    84, 110, 203, /* 40 */
      |    {           }
  775 |   216,  77,  84, /* 41 */
      |   {            }
  776 |   125, 128, 135, /* 42 */
      |   {            }
  777 |   237,  29,  61, /* 43 */
      |   {            }
  778 |   184, 118, 120, /* 44 */
      |   {            }
  779 |   155,   9,   0, /* 45 */
      |   {            }
  780 |   155, 119, 107, /* 46 */
      |   {            }
  781 |    80, 110, 196, /* 47 */
      |    {           }
  782 |   122, 127, 157, /* 48 */
      |   {            }
  783 |    50,  85, 241, /* 49 */
      |    {           }
  784 |   201,  93,  91, /* 50 */
      |   {            }
  785 |   254,   0,   5, /* 51 */
      |   {            }
  786 |   155, 137, 133, /* 52 */
      |   {            }
  787 |     3,  53, 246  /* 53 */
      |     {
  788 | };
      | }
cn3dwin.c: In function ‘Cn3D_Default_HLColor’:
cn3dwin.c:982:27: warning: variable ‘colorB’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |                           ^~~~~~
cn3dwin.c:982:19: warning: variable ‘colorG’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |                   ^~~~~~
cn3dwin.c:982:11: warning: variable ‘colorR’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |           ^~~~~~
cn3dwin.c: In function ‘Cn3D_RedrawEx’:
cn3dwin.c:1251:19: warning: unused variable ‘iColor’ [-Wunused-variable]
 1251 |     DDV_ColorCell iColor;
      |                   ^~~~~~
cn3dwin.c: In function ‘fnPreCHLresidue’:
cn3dwin.c:1543:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1543 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c: In function ‘Viewer3DGroups’:
cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1728 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Cn3D_AlignEdit’:
cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable]
 1936 |     Int2 iCount = 0;
      |          ^~~~~~
cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable]
 1935 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable]
 1933 |     SeqAlignPtr salp = NULL;
      |                 ^~~~
cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable]
 1931 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
 1930 |     PDNMS pdnmsSlave = NULL;
      |           ^~~~~~~~~~
cn3dwin.c: In function ‘Cn3DWin’:
cn3dwin.c:2364:5: warning: implicit declaration of function ‘Nlm_SetOGLContext’; did you mean ‘Nlm_InitAppContext’? [-Wimplicit-function-declaration]
 2364 |     Nlm_SetOGLContext(NULL, NULL, NULL, NULL);
      |     ^~~~~~~~~~~~~~~~~
      |     Nlm_InitAppContext
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function]
 1626 | static void HLmolecule_MA(MAPtr ma,
      |             ^~~~~~~~~~~~~
cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function]
 1428 | static void HLatom_MA(MAPtr ma,
      |             ^~~~~~~~~
cn3dwin.c:1349:25: warning: ‘DoHighlightSeg’ defined but not used [-Wunused-function]
 1349 | static void LIBCALLBACK DoHighlightSeg(PFB pfbThis,
      |                         ^~~~~~~~~~~~~~
cn3dwin.c:979:13: warning: ‘Cn3D_Default_HLColor’ defined but not used [-Wunused-function]
  979 | static void Cn3D_Default_HLColor(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~
cn3dwin.c:953:13: warning: ‘Cn3D_BgColor’ defined but not used [-Wunused-function]
  953 | static void Cn3D_BgColor(IteM i)
      |             ^~~~~~~~~~~~
cn3dwin.c:936:13: warning: ‘Cn3D_Default_BgColor’ defined but not used [-Wunused-function]
  936 | static void Cn3D_Default_BgColor(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~
cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function]
  929 | static void Cn3D_MoveCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function]
  922 | static void Cn3D_ZoomCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:719:14: warning: ‘Cn3D_gViewCtrl’ defined but not used [-Wunused-variable]
  719 | static GrouP Cn3D_gViewCtrl;
      |              ^~~~~~~~~~~~~~
cn3dwin.c:713:14: warning: ‘Cn3D_gViewer’ defined but not used [-Wunused-variable]
  713 | static GrouP Cn3D_gViewer;
      |              ^~~~~~~~~~~~
cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable]
  688 | static IteM Cn3D_iModelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable]
  682 | static IteM Cn3D_iLabelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:676:14: warning: ‘Cn3D_Vy’ defined but not used [-Wunused-variable]
  676 | static Uint2 Cn3D_Vy, Cn3D_Rx;
      |              ^~~~~~~
mv cn3dwin.o cn3dwin.glo
mv cn3dwin.tmp cn3dwin.o
mv cn3dentr.o cn3dentr.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dentr.c:81:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv cn3dentr.o cn3dentr.glo
mv cn3dentr.tmp cn3dentr.o
mv cn3dmsg.o cn3dmsg.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsg.c:254:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’:
cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable]
  593 |     OMUserDataPtr omudp = NULL;
      |                   ^~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv cn3dmsg.o cn3dmsg.glo
mv cn3dmsg.tmp cn3dmsg.o
mv cn3dmatn.o cn3dmatn.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmatn.c:173:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmatn.c: In function ‘FindMM’:
cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable]
  217 |     PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
      |                             ^~~~~~~~~~~~~~
cn3dmatn.c: In function ‘DoMediaHL’:
cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable]
  249 |     Byte MainAtom = 0;
      |          ^~~~~~~~
cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable]
  247 |     PALD paldThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable]
  246 |     PVNAL pvnalThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable]
  245 |     PMAD pmadThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
  244 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’:
cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  372 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
mv cn3dmatn.o cn3dmatn.glo
mv cn3dmatn.tmp cn3dmatn.o
mv cn3dmodl.o cn3dmodl.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’:
cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable]
  353 |     PDNMG pdnmgThis = NULL;
      |           ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckHighlighted’:
cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  364 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’:
cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable]
  508 |     PMGD pmgd = NULL;
      |          ^~~~
cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
  507 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  506 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘fnAlignList’:
cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |                         ^~~~~~~~
cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |           ^~~~~~~~
cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable]
  995 |     SeqIdPtr sipThis = NULL;
      |              ^~~~~~~
cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  993 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’:
cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
 1065 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 1064 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SetResidueVisibilities’:
cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable]
 1201 |     PVNMO pvnmoThis = NULL;
      |           ^~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ListDomainProc’:
cn3dmodl.c:413:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                                  ^~
cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                              ^~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmodl.c:410:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  410 |             sprintf(MolName, "%4s  %2s", domaindata[iCount]->pcPDBName,
      |                                  ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv cn3dmodl.o cn3dmodl.glo
mv cn3dmodl.tmp cn3dmodl.o
mv cn3dshim.o cn3dshim.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dshim.c:131:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dshim.c: In function ‘Cn3D_Size’:
cn3dshim.c:413:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  413 |     PMSD pmsdThis;
      |          ^~~~~~~~
cn3dshim.c:412:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
  412 |     PDNMS pdnmsSlave;
      |           ^~~~~~~~~~
cn3dshim.c: In function ‘Cn3D_SizeCB’:
cn3dshim.c:399:36: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations]
  399 |                         BoundBox->x[i + 1]) BoundBox->x[i + 1] =
      |                         ~~~~~~~~~~~^~~~~~~
cn3dshim.c:395:17: note: within this loop
  395 |                 for (i = 0; i < 6; i += 2) { /* check to see if the atom lies outside the bound box */
      |                 ^~~
cn3dshim.c:391:36: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations]
  391 |                     BoundBox->x[i] = pflvDataThis[i / (int) 2];
      |                     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dshim.c:390:17: note: within this loop
  390 |                 for (i = 0; i < 6; i++) {
      |                 ^~~
mv cn3dshim.o cn3dshim.glo
mv cn3dshim.tmp cn3dshim.o
mv cn3dmesh.o cn3dmesh.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmesh.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  103 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmesh.c: In function ‘Cn3D_OpenMesh’:
cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  151 |     ButtoN b;
      |            ^
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |     fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge),
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |            &(Mesh.NumTri));
      |            ~~~~~~~~~~~~~~~
cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |         fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  120 |                &(Mesh.Vertices[i].Vertex[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  121 |                &(Mesh.Vertices[i].Vertex[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  122 |                &(Mesh.Vertices[i].Vertex[2]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  123 |                &(Mesh.Vertices[i].Normal[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  124 |                &(Mesh.Vertices[i].Normal[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |                &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  126 |                &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  129 |         fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  130 |                &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  133 |         fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  134 |                &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  135 |                &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  136 |                &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                &lDummy);
      |                ~~~~~~~~
mv cn3dmesh.o cn3dmesh.glo
mv cn3dmesh.tmp cn3dmesh.o
mv cn3dstyl.o cn3dstyl.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dstyl.c:72:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’:
cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
  459 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’:
cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable]
  641 |     PARS parsThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
  640 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’:
cn3dstyl.c:867:16: warning: unused variable ‘TopOn’ [-Wunused-variable]
  867 |         FALSE, TopOn = FALSE;
      |                ^~~~~
cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable]
  866 |     Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
      |                                            ^~~~~
cn3dstyl.c:864:17: warning: unused variable ‘k’ [-Wunused-variable]
  864 |     Int2 i = 0, k = 0, nameval = 0;
      |                 ^
cn3dstyl.c: In function ‘ModelSetLabelCtrls’:
cn3dstyl.c:1059:37: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
 1059 |     Int2 i = 0, val = 0, style = 0, size = 0;
      |                                     ^~~~
cn3dstyl.c: In function ‘lFeatureEditedAction’:
cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable]
 1136 |     Int4 val = 0;
      |          ^~~
cn3dstyl.c: In function ‘bFeatureMoveAction’:
cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1153 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘bFeatureEditAction’:
cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1176 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ModelControls’:
cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable]
 1364 |     PrompT ppt12, ppt13, ppt14;
      |                   ^~~~~
cn3dstyl.c:1363:9: warning: unused variable ‘ppt11’ [-Wunused-variable]
 1363 |         ppt11;
      |         ^~~~~
cn3dstyl.c:1362:60: warning: unused variable ‘ppt9’ [-Wunused-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                                            ^~~~
cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                    ^~~~
cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |            ^~~~
cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’:
cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable]
 1728 |     Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
      |                              ^~~~~~~~~~~~~~
cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable]
 1725 |     Int2 iMol = 0, iMolCurrent = 0;
      |                    ^~~~~~~~~~~
cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’:
cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                                            ^~~~~~~~~~
cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                         ^~~~~~~~~~
cn3dstyl.c: In function ‘GetUserDefinedFeature’:
cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
 2196 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’:
cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable]
 2551 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 2549 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable]
 2548 |     PDNMM pdnmmHead = NULL;
      |           ^~~~~~~~~
cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 2547 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function]
  456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable]
  149 | static ButtoN bResetFeatureTitle;
      |               ^~~~~~~~~~~~~~~~~~
cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable]
  144 | static PopuP Cn3D_pupModelStyleItem;
      |              ^~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c: In function ‘CopyLocation’:
cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  496 |     rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
mv cn3dstyl.o cn3dstyl.glo
mv cn3dstyl.tmp cn3dstyl.o
mv seqcons.o seqcons.tmp
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from seqcons.c:112:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from seqcons.c:115:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from seqcons.c:116:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=]
  263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] =
      |                   ^~~~~~~~~~~~~~~~~~
seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’:
seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                 ~~~~~~~~~~^~~~~~~~~~~
seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                                         ~~~~~~~~~~^~~~~~~~~~~
mv seqcons.o seqcons.glo
mv seqcons.tmp seqcons.o
rm -f libncbicn3dOGL.a
ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicn3dOGL.a ../lib
ranlib ../lib/libncbicn3dOGL.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_engine.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_extend.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_filter.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hits.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_itree.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_lookup.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_message.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_options.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seg.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_sw.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_setup.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_stat.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_traceback.c
blast_traceback.c: In function ‘BLAST_ComputeTraceback_MT’:
blast_traceback.c:1500: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 1500 | #pragma omp parallel for default(none) num_threads(actual_num_threads) schedule(guided) if (actual_num_threads > 1) \
      | 
blast_traceback.c:1524: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1524 | #pragma omp critical(retval)
      | 
blast_traceback.c:1530: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 1530 | #pragma omp flush(has_been_interrupted)
      | 
blast_traceback.c:1561: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1561 | #pragma omp critical(tback_gen_code)
      | 
blast_traceback.c:1591: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1591 | #pragma omp critical(retval)
      | 
blast_traceback.c:1631: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1631 | #pragma omp critical(tback_gen_code)
      | 
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_util.c
blast_util.c: In function ‘BlastProgram2Number’:
blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  306 |     else if (strcasecmp("mapper", program) == 0)
      |          ^~
blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  309 |  return 0;
      |  ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gapinfo.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF greedy_align.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF link_hsps.c
link_hsps.c: In function ‘s_FwdCompareHSPs’:
link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  133 |     else if (h1->context > h2->context)
      |          ^~
link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  136 |  if (h1->query.offset < h2->query.offset)
      |  ^~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF na_ungapped.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_math.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_std.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pattern.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_extend.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_lookup.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup_util.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_encoding.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_psi.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_kappa.c
blast_kappa.c: In function ‘Blast_RedoAlignmentCore_MT’:
blast_kappa.c:3407: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 3407 | #pragma omp parallel \
      | 
blast_kappa.c:3426: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
 3426 | #pragma omp for schedule(static)
      | 
blast_kappa.c:3428: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3428 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3489: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 3489 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3491: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3491 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3504: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 3504 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3506: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3506 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3722: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 3722 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3724: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3724 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3730: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas]
 3730 | #pragma omp barrier
      | 
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_parameters.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_posit.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_program.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_query_info.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_tune.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c
blast_nalookup.c: In function ‘s_NaHashLookupScanSubjectForWordCounts’:
blast_nalookup.c:1850: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 1850 | #pragma omp parallel for if (num_threads > 1) num_threads(num_threads) \
      | 
blast_nalookup.c:1858: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 1858 | #pragma omp critical (get_sequence_for_word_counts)
      | 
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_aascan.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_nascan.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF split_query.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF index_ungapped.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hspstream_mt_utils.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_traceback_mt_priv.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF boost_erf.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jumper.c
rm -f libblast.a
ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o blast_hspstream_mt_utils.o blast_traceback_mt_priv.o boost_erf.o jumper.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblast.a ../lib
ranlib ../lib/libblast.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_api.c: In function ‘s_BlastRPSInfoInit’:
blast_api.c:149:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  149 |    fscanf(auxfile, "%s", buffer);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:151:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  151 |    fscanf(auxfile, "%d", &info->aux_info.gap_open_penalty);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:152:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  152 |    fscanf(auxfile, "%d", &info->aux_info.gap_extend_penalty);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:153:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |    fscanf(auxfile, "%le", &info->aux_info.ungapped_k);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:154:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  154 |    fscanf(auxfile, "%le", &info->aux_info.ungapped_h);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:155:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  155 |    fscanf(auxfile, "%d", &info->aux_info.max_db_seq_length);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:156:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  156 |    fscanf(auxfile, "%d", &info->aux_info.db_length);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:157:4: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  157 |    fscanf(auxfile, "%lf", &info->aux_info.scale_factor);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:161:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  161 |       fscanf(auxfile, "%d", &seq_size); /* not used */
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:162:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  162 |       fscanf(auxfile, "%le", &info->aux_info.karlin_k[i]);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c: In function ‘s_BlastFindMatrixPath’:
blast_api.c:502:39: warning: ‘%s’ directive writing up to 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  502 |                  sprintf(buf_full, "%s%s%s%s", buf_path,
      |                                       ^~
  503 |                           alphabet_type, DIRDELIMSTR, matrix_name);
      |                           ~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4099) into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:484:35: warning: ‘data’ directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
  484 |          sprintf(buf_path_2, "%s%sdata%s", buf_path, DIRDELIMSTR, DIRDELIMSTR);
      |                                   ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:470:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  470 |          sprintf(buf_path_2, "%s%s", buf_path, DIRDELIMSTR);
      |                                   ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4097 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c: In function ‘s_BlastRPSInfoInit’:
blast_api.c:104:25: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  104 |    sprintf(filename, "%s.loo", (char *)pathname);
      |                         ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:123:25: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  123 |    sprintf(filename, "%s.rps", (char *)pathname);
      |                         ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:144:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  144 |    sprintf(filename, "%s.aux", (char *)pathname);
      |                         ^~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_input.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from blast_input.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_input.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast_input.c,v 1.32 2008/06/09 17:28:41 madden Exp $";
      |                   ^~~~~
blast_input.c: In function ‘BLAST_GetQuerySeqLoc’:
blast_input.c:98:21: warning: ‘%ld’ directive writing between 1 and 7 bytes into a region of size 4 [-Wformat-overflow=]
   98 |    sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES));
      |                     ^~~
blast_input.c:98:20: note: directive argument in the range [-131080, 131080]
   98 |    sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES));
      |                    ^~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from blast_input.c:34:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 8 bytes into a destination of size 4
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_format.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_format.h:45,
                 from blast_format.c:38:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_format.c: In function ‘s_MBXmlInit’:
blast_format.c:255:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
  255 |     Boolean retval = FALSE;
      |             ^~~~~~
blast_format.c: In function ‘s_LoadMatrix’:
blast_format.c:673:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  673 |                  ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
      |                     ~~~~~~^~~
blast_format.c:673:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  673 |                  ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
      |                                ~~~~~~^~~
At top level:
blast_format.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   35 | static char const rcsid[] = "$Id: blast_format.c,v 1.120 2012/10/10 14:07:01 fongah2 Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/ncbithr.h:87,
                 from blast_mtlock.c:39:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_mtlock.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   35 | static char const rcsid[] =
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_options_api.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_prelim.c
blast_prelim.c: In function ‘Blast_PrelimSearchThreadRun’:
blast_prelim.c:100:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  100 |    Int2 status = 0;
      |         ^~~~~~
At top level:
blast_prelim.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   34 | static char const rcsid[] = "$Id: blast_prelim.c,v 1.8 2006/05/24 21:17:50 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_returns.c
blast_returns.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_returns.c,v 1.39 2010/06/10 13:44:46 madden Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seq.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from blast_seq.c:34:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_seq.c: In function ‘s_SeqLocFillSequenceBuffer’:
blast_seq.c:529:10: warning: variable ‘seq_code’ set but not used [-Wunused-but-set-variable]
  529 |    Uint1 seq_code, strand;
      |          ^~~~~~~~
At top level:
blast_seq.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast_seq.c,v 1.89 2008/06/09 17:29:14 madden Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from ../include/algo/blast/api/blast_seqalign.h:42,
                 from blast_seqalign.c:35:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_seqalign.c: In function ‘s_HSPListToSeqAlignUngapped’:
blast_seqalign.c:343:26: warning: variable ‘hspset_cnt_old’ set but not used [-Wunused-but-set-variable]
  343 |    Int4 hsp_cnt, index2, hspset_cnt_old;
      |                          ^~~~~~~~~~~~~~
At top level:
blast_seqalign.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_seqalign.c,v 1.64 2010/02/12 20:54:54 maning Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_tabular.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from blast_tabular.c:35:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_tabular.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_tabular.c,v 1.41 2009/06/01 14:33:38 maning Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF repeats_filter.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from ../include/algo/blast/api/repeats_filter.h:41,
                 from repeats_filter.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
repeats_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: repeats_filter.c,v 1.19 2007/12/19 21:56:48 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c
seqsrc_multiseq.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   33 | static char const rcsid[] = "$Id: seqsrc_multiseq.c,v 1.28 2011/05/26 20:59:45 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from ../include/algo/blast/api/seqsrc_readdb.h:38,
                 from seqsrc_readdb.c:35:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqsrc_readdb.c: In function ‘s_ReaddbGetNextChunk’:
seqsrc_readdb.c:375:11: warning: variable ‘real_readdb_entries’ set but not used [-Wunused-but-set-variable]
  375 |     Uint4 real_readdb_entries;
      |           ^~~~~~~~~~~~~~~~~~~
At top level:
seqsrc_readdb.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: seqsrc_readdb.c,v 1.60 2011/05/26 20:59:45 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF twoseq_api.c
twoseq_api.c: In function ‘s_TwoSeqBasicFillOptions’:
twoseq_api.c:100:10: warning: unused variable ‘status’ [-Wunused-variable]
  100 |     Int2 status = 0;
      |          ^~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/algo/blast/api/twoseq_api.h:41,
                 from twoseq_api.c:45:
twoseq_api.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dust_filter.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from ../include/algo/blast/api/dust_filter.h:41,
                 from dust_filter.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dust_filter.c: In function ‘s_GetFilteringLocations’:
dust_filter.c:171:32: warning: unused variable ‘filter_slp_rev’ [-Wunused-variable]
  171 |                   BlastSeqLoc* filter_slp_rev = NULL;
      |                                ^~~~~~~~~~~~~~
At top level:
dust_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: dust_filter.c,v 1.12 2007/12/19 22:05:56 camacho Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_message_api.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from blast_message_api.c:33:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/ncbithr.h:87,
                 from hspfilter_queue.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
hspfilter_queue.c: In function ‘s_BlastHSPQueueInit’:
hspfilter_queue.c:65:24: warning: unused variable ‘q_data’ [-Wunused-variable]
   65 |    BlastHSPQueueData * q_data = data;
      |                        ^~~~~~
hspfilter_queue.c: In function ‘s_BlastHSPQueueNew’:
hspfilter_queue.c:157:24: warning: assignment to ‘BlastHSPWriterInitFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ [-Wincompatible-pointer-types]
  157 |    writer->InitFnPtr   = &s_BlastHSPQueueInit;
      |                        ^
hspfilter_queue.c:158:24: warning: assignment to ‘BlastHSPWriterFinalFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ [-Wincompatible-pointer-types]
  158 |    writer->FinalFnPtr  = &s_BlastHSPQueueFinal;
      |                        ^
hspfilter_queue.c: In function ‘BlastHSPQueueInfoNew’:
hspfilter_queue.c:189:26: warning: assignment to ‘BlastHSPWriterNewFn’ {aka ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *, BLAST_SequenceBlk *)’} from incompatible pointer type ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *)’ [-Wincompatible-pointer-types]
  189 |    writer_info->NewFnPtr = &s_BlastHSPQueueNew;
      |                          ^
At top level:
hspfilter_queue.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   36 | static char const rcsid[] =
      |                   ^~~~~
rm -f libblastapi.a
ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblastapi.a ../lib
ranlib ../lib/libblastapi.a
i686-linux-gnu-gcc -o asntool -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -DWIN_MOTIF  -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asntool.c:64:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asncode.c:52:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asncode.c: In function ‘AsnCodeGenEnumDefines’:
asncode.c:736:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long long int’} [-Wformat=]
  736 |   sprintf (iter->buf, "%s %d\n", AsnCodeCleanName (avtp->name, lclbuf,
      |                           ~^
      |                            |
      |                            int
      |                           %lld
  737 |     CLEAN_FOR_SLOT, iter -> acip -> maxDefineLength), avtp->intvalue);
      |                                                       ~~~~~~~~~~~~~~
      |                                                           |
      |                                                           Nlm_Int8 {aka long long int}
asncode.c: In function ‘AsnCode_SETOF_base_or_user’:
asncode.c:1518:20: warning: variable ‘real_type’ set but not used [-Wunused-but-set-variable]
 1518 |    Int2            real_type;
      |                    ^~~~~~~~~
asncode.c:1517:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable]
 1517 |    CharPtr         valslot;
      |                    ^~~~~~~
asncode.c: In function ‘userobj_and_basetype_SETOF’:
asncode.c:2472:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable]
 2472 |    CharPtr         valslot;
      |                    ^~~~~~~
asncode.c: In function ‘AsnCodeIsReallyChoice’:
asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 3201 |    if (now_atp)
      |       ^
asncode.c: In function ‘AsnCodeFunctionWriteFuncChoiceStart’:
asncode.c:3623:20: warning: variable ‘obj_use’ set but not used [-Wunused-but-set-variable]
 3623 |    CharPtr         obj_use = which_node->obj_name;
      |                    ^~~~~~~
asncode.c: In function ‘AsnCodeIter’:
asncode.c:4238:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 4238 |    if (iter->atp != NULL)
      |       ^
asncode.c: In function ‘AsnCode’:
asncode.c:4317:48: warning: variable ‘objnamety’ set but not used [-Wunused-but-set-variable]
 4317 |    CharPtr objnameuc = NULL, objnamemc = NULL, objnamety = NULL;
      |                                                ^~~~~~~~~
At top level:
asncode.c:291:17: warning: ‘defbyte’ defined but not used [-Wunused-variable]
  291 | static CharPtr  defbyte = "ASNCODE_BYTEVAL_SLOT";
      |                 ^~~~~~~
asncode.c:290:17: warning: ‘defbool’ defined but not used [-Wunused-variable]
  290 | static CharPtr  defbool = "ASNCODE_BOOLVAL_SLOT";
      |                 ^~~~~~~
asncode.c:289:17: warning: ‘defreal’ defined but not used [-Wunused-variable]
  289 | static CharPtr  defreal = "ASNCODE_REALVAL_SLOT";
      |                 ^~~~~~~
asncode.c:288:17: warning: ‘defbigint’ defined but not used [-Wunused-variable]
  288 | static CharPtr  defbigint = "ASNCODE_BIGINTVAL_SLOT";
      |                 ^~~~~~~~~
asncode.c:286:17: warning: ‘defptr’ defined but not used [-Wunused-variable]
  286 | static CharPtr  defptr = "ASNCODE_PTRVAL_SLOT";
      |                 ^~~~~~
/usr/lib/gcc-cross/i686-linux-gnu/10/../../../../i686-linux-gnu/bin/ld: ../lib/libncbi.a(ncbifile.o): in function `Nlm_TmpNam':
./build/ncbifile.c:1211: warning: the use of `tempnam' is dangerous, better use `mkstemp'
cp -p asntool ../bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build -f makedemo.unx LCL=lnx CC="i686-linux-gnu-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2" VIBLIBS= VIBFLAG= LIB50=-lpcre
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
./ln-if-absent ../demo/*.* .
./ln-if-absent ../regexp/test/*.* .
./ln-if-absent ../regexp/demo/*.* .
./ln-if-absent ../internal/*.* .
set: No match.
make[2]: [makedemo.unx:160: copy] Error 1 (ignored)
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
i686-linux-gnu-gcc -o testcore -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  testcore.c  -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from testcore.c:42:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
testcore.c:337:13: warning: ‘TestStrings’ defined but not used [-Wunused-function]
  337 | static void TestStrings (void)
      |             ^~~~~~~~~~~
i686-linux-gnu-gcc -o makeset -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  makeset.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/all.h:9,
                 from makeset.c:9:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from makeset.c:9:
../include/all.h:7293: warning: "RNA_QUAL" redefined
 7293 | #define RNA_QUAL &at[2254]
      | 
../include/all.h:5823: note: this is the location of the previous definition
 5823 | #define RNA_QUAL &at[1025]
      | 
makeset.c: In function ‘Nlm_Main’:
makeset.c:27:26: warning: unused variable ‘uid’ [-Wunused-variable]
   27 |  Int4 seekptr, tempseek, uid;
      |                          ^~~
makeset.c:27:16: warning: unused variable ‘tempseek’ [-Wunused-variable]
   27 |  Int4 seekptr, tempseek, uid;
      |                ^~~~~~~~
makeset.c:27:7: warning: unused variable ‘seekptr’ [-Wunused-variable]
   27 |  Int4 seekptr, tempseek, uid;
      |       ^~~~~~~
i686-linux-gnu-gcc -o getmesh -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  getmesh.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/allpub.h:9,
                 from getmesh.c:8:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o indexpub -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  indexpub.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/allpub.h:9,
                 from indexpub.c:7:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o getpub -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  getpub.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/allpub.h:9,
                 from getpub.c:7:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o testobj -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  testobj.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from testobj.c:8:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o seqtest -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  seqtest.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from seqtest.c:8:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o dosimple -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  dosimple.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/simple.h:63,
                 from dosimple.c:7:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o asn2ff -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  asn2ff.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from asn2ff.c:7:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff.c: In function ‘Nlm_Main’:
asn2ff.c:129:10: warning: unused variable ‘good’ [-Wunused-variable]
  129 |  Boolean good = FALSE;
      |          ^~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff.c:9:
At top level:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff.c: In function ‘Nlm_Main’:
asn2ff.c:404:7: warning: ‘atp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  404 |    if (atp == atp2) {  /* top level Seq-entry */
      |       ^
asn2ff.c:351:7: warning: ‘atp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  351 |    if (atp == atp1) {
      |       ^
i686-linux-gnu-gcc -o checksub -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  checksub.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from checksub.c:8:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o asndhuff -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  asndhuff.c  -lncbiacc -lncbicdr -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/casn.h:96,
                 from asndhuff.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asndhuff.c: In function ‘do_medline’:
asndhuff.c:182:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  182 |  for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count)
      |                ^~~~~
asndhuff.c: In function ‘do_sequence’:
asndhuff.c:221:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  221 |  for (count=0; entry=CASN_NextSeqEntry(casnh); ++count)
      |                ^~~~~
asndhuff.c:200:10: warning: unused variable ‘val’ [-Wunused-variable]
  200 |  DataVal val;
      |          ^~~
i686-linux-gnu-gcc -o entrcmd -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from entrcmd.c:113:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
entrcmd.c: In function ‘PrintDSPMwww’:
entrcmd.c:373:21: warning: unused variable ‘lsp’ [-Wunused-variable]
  373 |     LocalLinkSetPtr lsp;
      |                     ^~~
entrcmd.c: In function ‘PrintDSPNwww’:
entrcmd.c:465:21: warning: unused variable ‘lsp’ [-Wunused-variable]
  465 |     LocalLinkSetPtr lsp;
      |                     ^~~
entrcmd.c: In function ‘PrintDSPPwww’:
entrcmd.c:569:21: warning: unused variable ‘lsp’ [-Wunused-variable]
  569 |     LocalLinkSetPtr lsp;
      |                     ^~~
entrcmd.c: In function ‘TermProcessing’:
entrcmd.c:1297:13: warning: variable ‘inclusive’ set but not used [-Wunused-but-set-variable]
 1297 |     Boolean inclusive;
      |             ^~~~~~~~~
entrcmd.c:1296:13: warning: variable ‘endWithTerm’ set but not used [-Wunused-but-set-variable]
 1296 |     Boolean endWithTerm = FALSE;
      |             ^~~~~~~~~~~
entrcmd.c:1295:13: warning: variable ‘beginWithTerm’ set but not used [-Wunused-but-set-variable]
 1295 |     Boolean beginWithTerm = FALSE;
      |             ^~~~~~~~~~~~~
At top level:
entrcmd.c:284:16: warning: ‘IsGenBank’ defined but not used [-Wunused-function]
  284 | static Boolean IsGenBank (SeqEntryPtr sep)
      |                ^~~~~~~~~
entrcmd.c: In function ‘RunProgram’:
entrcmd.c:1096:19: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1096 |             if (! ProcessOutput(lsp, db, outputSpec, processingCount,
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1097 |                                 lsp != NULL ? lsp->num : processingCount,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1098 |                                 parseOnly))
      |                                 ~~~~~~~~~~
entrcmd.c: In function ‘Nlm_Main’:
entrcmd.c:2235:9: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2235 |         RunProgram(programStr, lsp, db, FALSE);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
entrcmd.c:2191:31: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2191 |                     temp = lsp->uids[k];
      |                            ~~~^~~~~~
entrcmd.c:1548:17: warning: ‘db’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1548 |         slp->db = db;
      |         ~~~~~~~~^~~~
entrcmd.c:1476:13: note: ‘db’ was declared here
 1476 |     DocType db;
      |             ^~
entrcmd.c:1620:15: warning: ‘vector’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1620 |     lsp->uids = vector;
      |     ~~~~~~~~~~^~~~~~~~
entrcmd.c:1582:13: note: ‘vector’ was declared here
 1582 |     Int4Ptr vector;
      |             ^~~~~~
In file included from ../include/ncbi.h:65,
                 from entrcmd.c:113:
../include/ncbifile.h:121:20: warning: ‘neighborFile’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  121 | #define FileLength Nlm_FileLength
      |                    ^~~~~~~~~~~~~~
entrcmd.c:1919:13: note: ‘neighborFile’ was declared here
 1919 |     CharPtr neighborFile;
      |             ^~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from entrcmd.c:113:
../include/ncbistr.h:312:18: warning: ‘taxString’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  312 | #define StrICmp  Nlm_StrICmp
      |                  ^~~~~~~~~~~
entrcmd.c:1917:13: note: ‘taxString’ was declared here
 1917 |     CharPtr taxString;
      |             ^~~~~~~~~
entrcmd.c:2231:9: warning: ‘termString’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2231 |         TermProcessing(programStr, termString, db, FALSE);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
entrcmd.c:2137:20: warning: ‘boolString’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2137 |         if ((bsp = EntrezTLEvalXString(boolString, db, -1, NULL, NULL)) != NULL)
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -o errhdr -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  errhdr.c  -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from errhdr.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from errhdr.c:1:
In function ‘strncat’,
    inlined from ‘main’ at errhdr.c:44:4:
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 32 equals destination size [-Wstringop-truncation]
  122 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/i686-linux-gnu/include/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ specified bound 32 equals destination size [-Wstringop-overflow=]
i686-linux-gnu-gcc -o cdscan -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  cdscan.c  -lncbiacc -lncbicdr -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cdscan.c:83:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdscan.c:576:13: warning: ‘SeqEntryToFeat’ defined but not used [-Wunused-function]
  576 | static void SeqEntryToFeat (SeqEntryPtr sep, FILE *fp)
      |             ^~~~~~~~~~~~~~
cdscan.c:392:13: warning: ‘GenBankPubs’ defined but not used [-Wunused-function]
  392 | static void GenBankPubs (SeqEntryPtr sep, FILE * fp)
      |             ^~~~~~~~~~~
cdscan.c:133:13: warning: ‘root’ defined but not used [-Wunused-variable]
  133 | static Char root [PATH_MAX];
      |             ^~~~
i686-linux-gnu-gcc -o findspl -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi \
    -lconnssl -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from findspl.c:62:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o ncbisort -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  sortcmd.c -lncbitool -lblastcompadj \
	-lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbisort.h:62,
                 from sortcmd.c:64:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o fa2htgs -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  fa2htgs.c -lncbiobj -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from fa2htgs.c:30:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
fa2htgs.c: In function ‘Nlm_Main’:
fa2htgs.c:475:10: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  475 |     litp = (SeqLitPtr) dsp->data.ptrvalue;
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fa2htgs.c:448:16: note: ‘dsp’ was declared here
  448 |   DeltaSeqPtr  dsp;
      |                ^~~
i686-linux-gnu-gcc -o testval -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  testval.c -lncbiobj -lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from testval.c:9:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
testval.c: In function ‘Nlm_Main’:
testval.c:186:7: warning: ‘atp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  186 |    if (atp == atp2)    /* top level Seq-entry */
      |       ^
testval.c:183:17: warning: ‘atp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  183 |   while ((atp = AsnReadId(aip, amp, atp)) != NULL)
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -o vecscreen -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  vecscreen.c  -lncbitool \
	-lblastcompadj -lncbiobj -lncbi -lm 
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from vecscreen.c:57:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/sqnutils.h:51,
                 from vecscreen.c:68:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -o gil2bin -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  gil2bin.c -lncbitool -lblastcompadj \
	-lncbiobj -lncbi -lm 
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gil2bin.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gil2bin.c: In function ‘Nlm_Main’:
gil2bin.c:90:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
   90 |     else
      |     ^~~~
gil2bin.c:93:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
   93 |  return 0;
      |  ^~~~~~
i686-linux-gnu-gcc -o asn2xml -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  asn2xml.c -lncbiobj -lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from asn2xml.c:21:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o debruijn -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  debruijn.c -lblast -lblastcompadj -lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from debruijn.c:38:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
debruijn.c: In function ‘Nlm_Main’:
debruijn.c:72:12: warning: pointer targets in assignment from ‘Nlm_CharPtr’ {aka ‘char *’} to ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} differ in signedness [-Wpointer-sign]
   72 |   alphabet = myargs[1].strvalue;
      |            ^
debruijn.c:80:14: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign]
   80 |   k = strlen(alphabet);
      |              ^~~~~~~~
      |              |
      |              Nlm_Uint1 * {aka unsigned char *}
In file included from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from debruijn.c:38:
/usr/i686-linux-gnu/include/string.h:391:35: note: expected ‘const char *’ but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’}
  391 | extern size_t strlen (const char *__s)
      |                       ~~~~~~~~~~~~^~~
debruijn.c:89:10: warning: pointer targets in assignment from ‘char *’ to ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} differ in signedness [-Wpointer-sign]
   89 |   output = (char *) malloc(outputsize + 1);
      |          ^
debruijn.c:106:8: warning: pointer targets in passing argument 1 of ‘puts’ differ in signedness [-Wpointer-sign]
  106 |   puts(output);
      |        ^~~~~~
      |        |
      |        Nlm_Uint1 * {aka unsigned char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from debruijn.c:38:
/usr/i686-linux-gnu/include/stdio.h:637:30: note: expected ‘const char *’ but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’}
  637 | extern int puts (const char *__s);
      |                  ~~~~~~~~~~~~^~~
debruijn.c:109:1: warning: control reaches end of non-void function [-Wreturn-type]
  109 | }
      | ^
At top level:
debruijn.c:29:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   29 | static char const rcsid[] = "$Id: debruijn.c,v 1.4 2004/02/09 21:24:59 ucko Exp $";
      |                   ^~~~~
i686-linux-gnu-gcc -o asn2idx -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  asn2idx.c -lncbitool -lblastcompadj -lncbiobj \
	-lncbi -lm 
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2idx.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o sortbyquote -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  sortbyquote.c -lncbiobj -lncbi -lm 
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from sortbyquote.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o subfuse -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  subfuse.c -lncbiobj -lncbi -lm 
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from subfuse.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o test_regexp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  pcretest.c -lpcre
i686-linux-gnu-gcc -o demo_regexp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  pcredemo.c -lpcre
i686-linux-gnu-gcc -o demo_regexp_grep -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  pcregrep.c -lpcre
pcregrep.c: In function ‘main’:
pcregrep.c:515:64: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  515 |     if (pattern_count == 1) s[0] = 0; else sprintf(s, " number %d", j);
      |                                                                ^~
pcregrep.c:515:55: note: directive argument in the range [0, 2147483647]
  515 |     if (pattern_count == 1) s[0] = 0; else sprintf(s, " number %d", j);
      |                                                       ^~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from pcregrep.c:9:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 10 and 19 bytes into a destination of size 16
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build -f makenet.unx LCL=lnx CC="i686-linux-gnu-gcc" LDFLAGS1="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2" THREAD_OBJ="ncbithr.o" \
    THREAD_OTHERLIBS="-lpthread" \
    NETENTREZVERSION="2.02c2ASN1SPEC6" BLIB31=libvibnet.a \
    OGLLIBS= VIBLIBS= VIB="Psequin sbtedit udv ddv taxblast idfetch asn2gb tbl2asn gene2xml entrez2 gbseqget asn2all asn2asn asn2fsa asn2xml asndisc asnmacro asnval cleanasn insdseqget nps2gps spidey trna2sap trna2tbl Cn3D"
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
./ln-if-absent ../connect/test/*.c .
./ln-if-absent ../network/entrez/client/*.h ../include
./ln-if-absent ../network/entrez/client/*.c .
./ln-if-absent ../network/medarch/client/*.h ../include
./ln-if-absent ../network/medarch/client/*.c .
./ln-if-absent ../network/taxonomy/client/*.h ../include
set: No match.
make[2]: [makenet.unx:480: copy] Error 1 (ignored)
./ln-if-absent ../network/taxonomy/client/*.c .
set: No match.
make[2]: [makenet.unx:481: copy] Error 1 (ignored)
./ln-if-absent ../network/taxon1/common/*.h ../include
./ln-if-absent ../network/taxon1/common/*.c .
./ln-if-absent ../network/taxon1/taxon2/*.h ../include
./ln-if-absent ../network/taxon1/taxon2/*.c .
./ln-if-absent ../network/id0arch/client/*.h ../include
set: No match.
make[2]: [makenet.unx:486: copy] Error 1 (ignored)
./ln-if-absent ../network/id0arch/client/*.c .
set: No match.
make[2]: [makenet.unx:487: copy] Error 1 (ignored)
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id1arch/*.c .
./ln-if-absent ../network/id2arch/*.h ../include
./ln-if-absent ../network/id2arch/*.c .
./ln-if-absent ../network/spell/client/*.h ../include
./ln-if-absent ../network/spell/client/*.c .
./ln-if-absent ../network/suggest/client/*.h ../include
./ln-if-absent ../network/suggest/client/*.c .
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/blast3/client/*.c .
./ln-if-absent ../tools/taxblast.h ../include
./ln-if-absent ../tools/taxblast.c .
./ln-if-absent /*.c .
set: No match.
make[2]: [makenet.unx:500: copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.c .
set: No match.
make[2]: [makenet.unx:501: copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.h ../include
set: No match.
make[2]: [makenet.unx:502: copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.c .
set: No match.
make[2]: [makenet.unx:503: copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.h ../include
set: No match.
make[2]: [makenet.unx:504: copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.c .
set: No match.
make[2]: [makenet.unx:505: copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.h ../include
set: No match.
make[2]: [makenet.unx:506: copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.c .
set: No match.
make[2]: [makenet.unx:507: copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.h ../include
set: No match.
make[2]: [makenet.unx:508: copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.c .
set: No match.
make[2]: [makenet.unx:509: copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.h ../include
set: No match.
make[2]: [makenet.unx:510: copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.c .
set: No match.
make[2]: [makenet.unx:511: copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.h ../include
set: No match.
make[2]: [makenet.unx:512: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.c .
set: No match.
make[2]: [makenet.unx:513: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.h ../include
set: No match.
make[2]: [makenet.unx:514: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.c .
set: No match.
make[2]: [makenet.unx:515: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.h ../include
set: No match.
make[2]: [makenet.unx:516: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.c .
set: No match.
make[2]: [makenet.unx:517: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
set: No match.
make[2]: [makenet.unx:518: copy] Error 1 (ignored)
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/nsclilib/*.c .
./ln-if-absent ../network/vibnet/*.c .
./ln-if-absent ../network/vibnet/*.h ../include
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../network/wwwblast/Src/*.c .
./ln-if-absent ../cdromlib/accentr.c .
./ln-if-absent ../cdromlib/accutils.c .
./ln-if-absent ../sequin/*.* .
./ln-if-absent ../demo/entrez.c .
./ln-if-absent ../demo/seqget.c .
./ln-if-absent ../demo/entrcmd.c .
./ln-if-absent ../demo/batch.c .
./ln-if-absent ../demo/qbatch.c .
./ln-if-absent ../demo/elecpcr.c .
./ln-if-absent ../demo/asn2fast.c .
./ln-if-absent ../demo/asn2asn.c .
./ln-if-absent ../demo/cleanasn.c .
./ln-if-absent ../demo/cspeedtest.c .
./ln-if-absent ../demo/sqn2agp.c .
./ln-if-absent ../demo/sugint.c .
./ln-if-absent ../demo/fetchent.c .
./ln-if-absent ../demo/udvmain.c .
./ln-if-absent ../demo/rtestval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asn2ff.c .
./ln-if-absent ../demo/asn2gb.c .
./ln-if-absent ../demo/asn2fsa.c .
./ln-if-absent ../demo/asn2all.c .
./ln-if-absent ../demo/gene2xml.c .
./ln-if-absent ../demo/asnval.c .
./ln-if-absent ../demo/asndisc.c .
./ln-if-absent ../demo/asnbarval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asnmacro.c .
./ln-if-absent ../demo/asnstrip.c .
./ln-if-absent ../demo/tbl2asn.c .
./ln-if-absent ../demo/raw2delt.c .
./ln-if-absent ../demo/flint.c .
./ln-if-absent ../demo/xlint.c .
./ln-if-absent ../demo/diffshift.c .
./ln-if-absent ../demo/gbseqget.c .
./ln-if-absent ../demo/insdseqget.c .
./ln-if-absent ../demo/nps2gps.c .
./ln-if-absent ../demo/testent2.c .
./ln-if-absent ../demo/trna2sap.c .
./ln-if-absent ../demo/trna2tbl.c .
./ln-if-absent ../demo/entrez2.c .
./ln-if-absent ../demo/condense.c .
./ln-if-absent ../demo/spideymain.c .
./ln-if-absent ../demo/dotmain.c .
./ln-if-absent ../demo/ingenmain.c .
./ln-if-absent ../demo/bl2seq.c .
./ln-if-absent ../demo/blastall.c .
./ln-if-absent ../demo/blast_driver.c .
./ln-if-absent ../demo/src_chk.c .
./ln-if-absent ../demo/tbl_chk.c .
./ln-if-absent ../demo/export_cmt.c .
./ln-if-absent ../internal/parser/flat2asn.c .
make[2]: [makenet.unx:577: copy] Error 1 (ignored)
./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
./ln-if-absent ../network/entrez/server/*.* .
set: No match.
make[2]: [makenet.unx:579: copy] Error 1 (ignored)
./ln-if-absent ../network/suggest/server/*.* .
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \""  ni_lib_.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from ni_lib_.c:76:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ni_debug.c:55:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ni_service.c:125:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ni_service.c: In function ‘s_GenericGetService’:
ni_service.c:201:19: warning: unused variable ‘c’ [-Wunused-variable]
  201 |     CONNECTOR     c;
      |                   ^
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from ../include/ni_error.h:76,
                 from ni_error.c:72:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rm -f libnetcli.a
ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetcli.a ../lib
ranlib ../lib/libnetcli.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from netentr.c:161:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netentr.c: In function ‘s_NetEntTLEvalCount’:
netentr.c:798:5: warning: "/*" within comment [-Wcomment]
  798 |     /*MsgSetReadTimeout(Entrez_ni, 60);*/
      |      
netentr.c: In function ‘s_NetDocSumListGet’:
netentr.c:856:18: warning: variable ‘amp’ set but not used [-Wunused-but-set-variable]
  856 |     AsnModulePtr amp;
      |                  ^~~
netentr.c: In function ‘s_NetTermListByTerm’:
netentr.c:1212:9: warning: variable ‘terms_to_read’ set but not used [-Wunused-but-set-variable]
 1212 |     int terms_to_read;
      |         ^~~~~~~~~~~~~
netentr.c:1200:14: warning: unused variable ‘asnout’ [-Wunused-variable]
 1200 |     AsnIoPtr asnout = Entrez_asnout;
      |              ^~~~~~
netentr.c: In function ‘s_NetTermListByPage’:
netentr.c:1343:14: warning: unused variable ‘asnout’ [-Wunused-variable]
 1343 |     AsnIoPtr asnout = Entrez_asnout;
      |              ^~~~~~
netentr.c: In function ‘NetEntTLEval’:
netentr.c:675:12: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  675 |     return lsp;
      |            ^~~
netentr.c: In function ‘NetEntTLEvalCount’:
netentr.c:800:8: warning: ‘atp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  800 |     if (atp == ENTREZ_BACK_eval_count)
      |        ^
netentr.c:782:16: note: ‘atp’ was declared here
  782 |     AsnTypePtr atp;
      |                ^~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from netlib.c:82:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netlib.c: In function ‘BoolExprAsnWrite’:
netlib.c:307:16: warning: unused variable ‘n’ [-Wunused-variable]
  307 |     static int n = 0;
      |                ^
At top level:
netlib.c:307:16: warning: ‘n’ defined but not used [-Wunused-variable]
netlib.c:96:16: warning: ‘loaded’ defined but not used [-Wunused-variable]
   96 | static Boolean loaded = FALSE;
      |                ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnneten.h:9,
                 from objneten.c:86:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objneten.c: In function ‘NetEntAsnLoad’:
objneten.c:106:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  106 |     if (loaded)
      |     ^~
objneten.c:108:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  108 |         loaded = TRUE;
      |         ^~~~~~
objneten.c: In function ‘EntrezNeighborTextAsnRead’:
objneten.c:2938:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2938 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘ChildLinkAsnRead’:
objneten.c:3148:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3148 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘EntrezHierarchyAsnRead’:
objneten.c:3442:15: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3442 |   AsnReadFunc func;
      |               ^~~~
objneten.c: In function ‘EntrezBlastreqAsnRead’:
objneten.c:3705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3705 |    AsnReadFunc func;
      |                ^~~~
objneten.c:3704:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3704 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘EntrezExtraInfoAsnRead’:
objneten.c:3911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3911 |    AsnReadFunc func;
      |                ^~~~
objneten.c:3910:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘ClusterArticlesAsnRead’:
objneten.c:4262:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4262 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4261:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4261 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘ClusterRespAsnRead’:
objneten.c:4455:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4455 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘DateConstraintsAsnRead’:
objneten.c:4622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4622 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘DateVectorAsnRead’:
objneten.c:4785:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4785 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4784:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4784 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘GetByFidAsnRead’:
objneten.c:4963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4963 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4962:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4962 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘GetFeatIdsAsnRead’:
objneten.c:5133:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5133 |    AsnReadFunc func;
      |                ^~~~
objneten.c:5132:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5132 |    Boolean isError = FALSE;
      |            ^~~~~~~
rm -f libnetentr.a
ar cru libnetentr.a netentr.o netlib.o objneten.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetentr.a ../lib
ranlib ../lib/libnetentr.a
./ln-if-absent accentr.c Naccentr.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Naccentr.c:297:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Naccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces]
  357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = {
      |                                                                                             ^
  358 |   8,  6,  3,  3,
      |   {            }
  359 |   8,  6,  3,  3,
      |   {            }
  360 |   8,  6,  3,  3,
      |   {            }
  361 |   8,  6,  3,  3,
      |   {            }
  362 |   9,  7,  4,  3,
      |   {            }
  363 |   9,  8,  5,  3,
      |   {            }
  364 |  10,  9,  5,  3,
      |  {             }
  365 |  10, 10,  5,  3,
      |  {             }
  366 |  11, 10,  5,  3,
      |  {             }
  367 |  11, 11,  5,  3,
      |  {             }
  368 |  12, 11,  5,  3,
      |  {             }
  369 |  12, 11,  5,  3,
      |  {             }
  370 |  12, 11,  5,  3
      |  {
  371 | };
      | }
Naccentr.c: In function ‘EntrezDocSumListGet’:
Naccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable]
 1409 |   Int2       actual;
      |              ^~~~~~
Naccentr.c: In function ‘EntrezGIForSeqIdFunc’:
Naccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
Naccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
rm -f libncbiNacc.a
ar cru libncbiNacc.a Naccentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiNacc.a ../lib
ranlib ../lib/libncbiNacc.a
./ln-if-absent accentr.c Caccentr.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Caccentr.c:297:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Caccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces]
  357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = {
      |                                                                                             ^
  358 |   8,  6,  3,  3,
      |   {            }
  359 |   8,  6,  3,  3,
      |   {            }
  360 |   8,  6,  3,  3,
      |   {            }
  361 |   8,  6,  3,  3,
      |   {            }
  362 |   9,  7,  4,  3,
      |   {            }
  363 |   9,  8,  5,  3,
      |   {            }
  364 |  10,  9,  5,  3,
      |  {             }
  365 |  10, 10,  5,  3,
      |  {             }
  366 |  11, 10,  5,  3,
      |  {             }
  367 |  11, 11,  5,  3,
      |  {             }
  368 |  12, 11,  5,  3,
      |  {             }
  369 |  12, 11,  5,  3,
      |  {             }
  370 |  12, 11,  5,  3
      |  {
  371 | };
      | }
Caccentr.c: In function ‘EntrezDocSumListGet’:
Caccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable]
 1409 |   Int2       actual;
      |              ^~~~~~
Caccentr.c: In function ‘EntrezGIForSeqIdFunc’:
Caccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
Caccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
rm -f libncbiCacc.a
ar cru libncbiCacc.a Caccentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiCacc.a ../lib
ranlib ../lib/libncbiCacc.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from netcnfg.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netcnfg.c: In function ‘ShowNetConfigForm’:
netcnfg.c:319:23: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
  319 |   PrompT        ppt0, ppt1;
      |                       ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from trmlst.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
trmlst.c: In function ‘FetchFromTermList’:
trmlst.c:1048:16: warning: variable ‘numRead’ set but not used [-Wunused-but-set-variable]
 1048 |   Int2         numRead;
      |                ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
docsum.c: In function ‘ImportDocSumForm’:
docsum.c:2298:21: warning: unused variable ‘sephead’ [-Wunused-variable]
 2298 |   SeqEntryPtr       sephead = NULL;
      |                     ^~~~~~~
docsum.c:2296:21: warning: unused variable ‘is_na’ [-Wunused-variable]
 2296 |   Boolean           is_na = TRUE;
      |                     ^~~~~
docsum.c:2290:21: warning: unused variable ‘choice’ [-Wunused-variable]
 2290 |   Uint1             choice = 0;
      |                     ^~~~~~
docsum.c: In function ‘SaveDocsumProject’:
docsum.c:3042:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 3042 |   SummFormPtr  sfp;
      |                ^~~
docsum.c: In function ‘LaunchStructureViewer’:
docsum.c:4192:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 4192 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
docsum.c:439:15: warning: ‘checkmark’ defined but not used [-Wunused-variable]
  439 | static Uint1  checkmark [] = {
      |               ^~~~~~~~~
docsum.c: In function ‘SetDefaultFailureMessage’:
docsum.c:687:48: warning: ‘ in ’ directive writing 4 bytes into a region of size between 3 and 42 [-Wformat-overflow=]
  687 |       sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname);
      |                                                ^~~~
docsum.c:687:21: note: assuming directive output of 3 bytes
  687 |       sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 78) into a destination of size 64
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
docsum.c: In function ‘FetchLocalBioseq’:
docsum.c:1223:6: warning: ‘str’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1223 |   if (str == NULL) return failed;
      |      ^
docsum.c: In function ‘LaunchStructureViewer.constprop’:
docsum.c:4191:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=]
 4191 |   sprintf (cmmd, "Cn3D %s &", path);
      |                        ^~     ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libvibnet.a
ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibnet.a ../lib
ranlib ../lib/libvibnet.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtax1.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtax1.c: In function ‘Taxon1ReqFree’:
objtax1.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objtax1.c: In function ‘Taxon1ReqAsnRead’:
objtax1.c:92:12: warning: unused variable ‘isError’ [-Wunused-variable]
   92 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1InfoAsnRead’:
objtax1.c:502:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  502 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:501:12: warning: unused variable ‘isError’ [-Wunused-variable]
  501 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1ErrorAsnRead’:
objtax1.c:1131:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1131 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1130:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1130 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1NameAsnRead’:
objtax1.c:1296:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1296 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1295:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1295 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1DataAsnRead’:
objtax1.c:1482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1482 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1481:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1481 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon2DataAsnRead’:
objtax1.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1670 |    AsnReadFunc func;
      |                ^~~~
objtax1.c: In function ‘Taxon1ReqAsnRead’:
objtax1.c:284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  284 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax1.c: In function ‘Taxon1RespAsnRead’:
objtax1.c:920:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  920 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/utilpub.h:4,
                 from taxutil.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxutil.c: In function ‘taxname_match’:
taxutil.c:66:24: warning: unused variable ‘taxstr’ [-Wunused-variable]
   66 |    CharPtr             taxstr = NULL;
      |                        ^~~~~~
taxutil.c: In function ‘get_lineage’:
taxutil.c:140:28: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 |   return Nlm_StringSave(onp->lineage);
      |                         ~~~^~~~~~~~~
taxutil.c: In function ‘get_gcode’:
taxutil.c:160:23: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  160 |    gclp->genomic = onp->gcode;
      |                    ~~~^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
tc2proc.c: In function ‘getIdByOrgRef’:
tc2proc.c:407:17: warning: unused variable ‘om_flag’ [-Wunused-variable]
  407 |         Boolean om_flag= FALSE;
      |                 ^~~~~~~
tc2proc.c: In function ‘bldLineage’:
tc2proc.c:1095:10: warning: unused variable ‘rank’ [-Wunused-variable]
 1095 |     Int2 rank= 0;
      |          ^~~~
tc2proc.c: In function ‘storedTaxId’:
tc2proc.c:2114:17: warning: unused variable ‘object_id’ [-Wunused-variable]
 2114 |     ObjectIdPtr object_id;
      |                 ^~~~~~~~~
tc2proc.c: In function ‘tax1e_needUpdate’:
tc2proc.c:2181:13: warning: unused variable ‘hit_name’ [-Wunused-variable]
 2181 |     CharPtr hit_name;
      |             ^~~~~~~~
tc2proc.c:2180:13: warning: unused variable ‘need_search_name’ [-Wunused-variable]
 2180 |     Boolean need_search_name= TRUE;
      |             ^~~~~~~~~~~~~~~~
tc2proc.c:2179:9: warning: unused variable ‘is_species’ [-Wunused-variable]
 2179 |     int is_species;
      |         ^~~~~~~~~~
tc2proc.c:2176:19: warning: unused variable ‘res’ [-Wunused-variable]
 2176 |     Taxon1DataPtr res;
      |                   ^~~
At top level:
tc2proc.c:403:13: warning: ‘getIdByOrgRef’ defined but not used [-Wunused-function]
  403 | static Int4 getIdByOrgRef(CharPtr sname, OrgNamePtr orNm)
      |             ^~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from txcdproc.c:116:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/txclient.h:73,
                 from parttree.c:79:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
parttree.c: In function ‘tax_ptree_addSubtree’:
parttree.c:392:13: warning: unused variable ‘need_remove’ [-Wunused-variable]
  392 |     Boolean need_remove= FALSE;
      |             ^~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from taxblast.c:161:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxblast.c: In function ‘TXBHtmlReportInternal’:
taxblast.c:1359:37: warning: variable ‘linlines’ set but not used [-Wunused-but-set-variable]
 1359 |     Int2 numtaxa, numorgs, numhits, linlines, longname;
      |                                     ^~~~~~~~
taxblast.c: In function ‘RDTaxLookupReset’:
taxblast.c:2050:1: warning: control reaches end of non-void function [-Wreturn-type]
 2050 | }
      | ^
At top level:
taxblast.c:1967:13: warning: ‘getTotalTaxIdCount’ defined but not used [-Wunused-function]
 1967 | static Int4 getTotalTaxIdCount(TreeCursorPtr cursor)
      |             ^~~~~~~~~~~~~~~~~~
taxblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: taxblast.c,v 6.31 2015/07/06 19:25:47 madden Exp $";
      |                   ^~~~~
taxblast.c: In function ‘TXBGetTargetGi’:
taxblast.c:504:12: warning: ‘gi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  504 |     return gi;
      |            ^~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from taxblast.c:161:
In function ‘strncpy’,
    inlined from ‘TXBHtmlReportInternal’ at taxblast.c:1491:17,
    inlined from ‘TXBHtmlReport’ at taxblast.c:1803:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound 128 equals destination size [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbitxc2.a
ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbitxc2.a ../lib
ranlib ../lib/libncbitxc2.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from id1gen.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
id1gen.c: In function ‘ID1serverRequestFree’:
id1gen.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
id1gen.c: In function ‘ID1serverRequestAsnRead’:
id1gen.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable]
   90 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1serverMaxcomplexAsnRead’:
id1gen.c:348:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  348 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:347:12: warning: unused variable ‘isError’ [-Wunused-variable]
  347 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1SeqHistAsnRead’:
id1gen.c:530:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  530 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:529:12: warning: unused variable ‘isError’ [-Wunused-variable]
  529 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1SeqEntryInfoAsnRead’:
id1gen.c:979:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  979 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:978:12: warning: unused variable ‘isError’ [-Wunused-variable]
  978 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1blobInfoAsnRead’:
id1gen.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1147 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:1146:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1146 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1serverDebugAsnRead’:
id1gen.c:1368:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1368 |    AsnReadFunc func;
      |                ^~~~
id1gen.c: In function ‘ID1serverBackAsnRead’:
id1gen.c:811:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  811 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
id1gen.c: In function ‘ID1serverRequestAsnRead’:
id1gen.c:186:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  186 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from id1arch.c:31:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
id1arch.c: In function ‘ID1ArchSeqEntryGet’:
id1arch.c:173:7: warning: unused variable ‘retval’ [-Wunused-variable]
  173 |  Int4 retval = 0;
      |       ^~~~~~
id1arch.c: In function ‘ID1ArchGIGet’:
id1arch.c:486:10: warning: unused variable ‘retval’ [-Wunused-variable]
  486 |     Int4 retval = 0;
      |          ^~~~~~
id1arch.c: In function ‘SeqHistPrintTable’:
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
  553 |                                         sprintf(repl_date,"%0.2d/%0.2d/%0.4d",
      |                                                           ^~~~~~~~~~~~~~~~~~~
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
id1arch.c:563:47: warning: spurious trailing ‘%’ in format [-Wformat=]
  563 |                         fprintf(fp,"%-20d%-20s%",old_gi,repl_date);
      |                                               ^
id1arch.c:558:65: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=]
  558 |                                         sprintf(repl_date,"%-20s",shp->replace_date->str);
      |                                                                 ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from id1arch.c:31:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes into a destination of size 20
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from accid1.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
accid1.c: In function ‘s_ID1BioseqFetchFunc’:
accid1.c:262:9: warning: unused variable ‘retcode’ [-Wunused-variable]
  262 |  Int2   retcode=0;
      |         ^~~~~~~
rm -f libncbiid1.a
ar cru libncbiid1.a id1gen.o id1arch.o accid1.o 
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiid1.a ../lib
ranlib ../lib/libncbiid1.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objblst3.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objblst3.c: In function ‘BlastSearchAsnRead’:
objblst3.c:91:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   91 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable]
   90 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastRequestFree’:
objblst3.c:287:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  287 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastRequestAsnRead’:
objblst3.c:337:12: warning: unused variable ‘isError’ [-Wunused-variable]
  337 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff2_cutoff2Free’:
objblst3.c:999:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  999 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastParametersAsnRead’:
objblst3.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1027 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘Cutoff2_cutoff2AsnRead’:
objblst3.c:1422:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1422 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff_cutoffAsnRead’:
objblst3.c:1788:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1788 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff_cutoffFree’:
objblst3.c:1871:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1871 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastMatrixAsnRead’:
objblst3.c:1936:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1936 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastDbinfoAsnRead’:
objblst3.c:2153:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2153 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2152:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2152 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastMaskAsnRead’:
objblst3.c:2357:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2357 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastKABlkAsnRead’:
objblst3.c:2517:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2517 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2516:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2516 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastErrorAsnRead’:
objblst3.c:2697:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2697 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2696:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2696 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastPhialignAsnRead’:
objblst3.c:2861:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2861 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastDbinfoGetAsnRead’:
objblst3.c:3022:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3022 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3021:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3021 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastSeqIdAsnRead’:
objblst3.c:3187:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3187 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3186:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3186 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastSequenceAsnRead’:
objblst3.c:3364:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3364 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3363:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3363 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastPartsAsnRead’:
objblst3.c:3532:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3532 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastQueuedAsnRead’:
objblst3.c:3694:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3694 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3693:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3693 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastProgressAsnRead’:
objblst3.c:3846:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3846 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3845:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3845 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastDeflineAsnRead’:
objblst3.c:4000:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4000 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3999:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3999 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastVersionAsnRead’:
objblst3.c:4168:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4168 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:4167:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4167 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘MegaBlastHitAsnRead’:
objblst3.c:4335:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4335 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:4334:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4334 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘MegaBlastResultsAsnRead’:
objblst3.c:4546:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4546 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastRequestAsnRead’:
objblst3.c:430:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  430 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c: In function ‘BlastResponseAsnRead’:
objblst3.c:791:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  791 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c: In function ‘BlastParametersAsnRead’:
objblst3.c:1474:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1474 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c:1421:10: note: ‘choice’ was declared here
 1421 |    Uint1 choice;
      |          ^~~~~~
objblst3.c:1840:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1840 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c:1787:10: note: ‘choice’ was declared here
 1787 |    Uint1 choice;
      |          ^~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from netblap3.c:359:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netblap3.c: In function ‘BlastNetBioseqFetchFunc’:
netblap3.c:1835:16: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable]
 1835 |  OMUserDataPtr omdp;
      |                ^~~~
netblap3.c: In function ‘MegaBlastSeqLocNetCore’:
netblap3.c:2049:8: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 2049 |  Uint2 entityID = 0;
      |        ^~~~~~~~
In file included from ../include/netblap3.h:135,
                 from netblap3.c:364:
netblap3.c: At top level:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
netblap3.c:452:1: warning: ‘BlastResetOldHook’ defined but not used [-Wunused-function]
  452 | BlastResetOldHook(void)
      | ^~~~~~~~~~~~~~~~~
netblap3.c:445:1: warning: ‘BlastGetErrorStatus’ defined but not used [-Wunused-function]
  445 | BlastGetErrorStatus(void)
      | ^~~~~~~~~~~~~~~~~~~
netblap3.c:438:1: warning: ‘BlastSetErrorStatus’ defined but not used [-Wunused-function]
  438 | BlastSetErrorStatus(Boolean status)
      | ^~~~~~~~~~~~~~~~~~~
netblap3.c:430:1: warning: ‘BlastSetErrorHook’ defined but not used [-Wunused-function]
  430 | BlastSetErrorHook(void)
      | ^~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from netblap3.c:364:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
netblap3.c: In function ‘BlastNetMatrixToBlastMatrix’:
netblap3.c:1212:35: warning: ‘index2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1212 |  if (index1 != blast_matrix->rows || index2 != blast_matrix->columns)
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netblap3.c: In function ‘SubmitRequest’:
netblap3.c:1763:18: warning: ‘bllist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1763 |     bllist->next = blresp;
      |     ~~~~~~~~~~~~~^~~~~~~~
netblap3.c:1698:19: note: ‘bllist’ was declared here
 1698 |  BlastResponsePtr bllist, blresp, head;
      |                   ^~~~~~
netblap3.c: In function ‘TraditionalBlastReportEngine’:
netblap3.c:2570:11: warning: ‘next_seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2570 |     while (seqalign) {
      |           ^
rm -f libnetblast.a
ar cru libnetblast.a objblst3.o netblap3.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetblast.a ../lib
ranlib ../lib/libnetblast.a
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmla.c:1:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmla.c: In function ‘MlaRequestFree’:
objmla.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objmla.c: In function ‘MlaRequestAsnRead’:
objmla.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable]
   96 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla.c: In function ‘TitleMsgAsnRead’:
objmla.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  447 |    AsnReadFunc func;
      |                ^~~~
objmla.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable]
  446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla.c: In function ‘TitleMsgListAsnRead’:
objmla.c:612:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  612 |    AsnReadFunc func;
      |                ^~~~
objmla.c: In function ‘MlaRequestAsnRead’:
objmla.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  249 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmla.c: In function ‘MlaBackAsnRead’:
objmla.c:902:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  902 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from medarch.c:122:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medarch.c:758:8: warning: ‘s_MedArchPubSetEntryGetUid’ defined but not used [-Wunused-function]
  758 | /*FCN*/s_MedArchPubSetEntryGetUid (
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~
medarch.c:710:8: warning: ‘s_MedArchPubSetEntryGetPmId’ defined but not used [-Wunused-function]
  710 | /*FCN*/s_MedArchPubSetEntryGetPmId (
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
medarch.c: In function ‘MedArchPubSetCreate’:
medarch.c:1693:9: warning: ‘pubSetEAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1693 |         MedlineEntryAsnWrite (lastmep, aip, pubSetEAtp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ni_types.h:85,
                 from ../include/ncbinet.h:84,
                 from medarch.c:122:
../include/asn.h:495:27: warning: ‘pubSetAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  495 | #define AsnEndStruct(x,y) AsnCloseStruct(x, y, NULL)
      |                           ^~~~~~~~~~~~~~
medarch.c:1625:16: note: ‘pubSetAtp’ was declared here
 1625 |     AsnTypePtr pubSetAtp;
      |                ^~~~~~~~~
medarch.c:1655:5: warning: ‘startAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1655 |     AsnWrite (aip, startAtp, NULL);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/medutil.h:79,
                 from medutil.c:58:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medutil.c: In function ‘FixPubEquiv’:
medutil.c:1134:16: warning: variable ‘got’ set but not used [-Wunused-but-set-variable]
 1134 |     Boolean    got;
      |                ^~~
rm -f libncbimla.a
ar cru libncbimla.a objmla.o medarch.o medutil.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbimla.a ../lib
ranlib ../lib/libncbimla.a
i686-linux-gnu-gcc -o Psequin -I. -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c \
-lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb \
-lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla \
-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lconnssl -lncbi \
  -lm
sequin1.c:46:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
   46 | static char *date_of_compilation = __DATE__;
      |                                    ^~~~~~~~
sequin1.c:47:36: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
   47 | static char *time_of_compilation = __TIME__;
      |                                    ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin1.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin1.c: In function ‘SQACT_GuessWhatIAm’:
sequin1.c:4884:76: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 4884 |       if ((Int4)(*cp) < 0 || (Int4)(*cp) >= 256 || ! isprint ((Int4)(*cp)) && ! isspace ((Int4)(*cp)))
      |                                                                            ^
sequin1.c: In function ‘FinishAlignmentRead’:
sequin1.c:5196:16: warning: variable ‘rsult’ set but not used [-Wunused-but-set-variable]
 5196 |   Boolean      rsult;
      |                ^~~~~
sequin1.c: In function ‘BioseqViewFormMenus’:
sequin1.c:8357:18: warning: variable ‘mssgext’ set but not used [-Wunused-but-set-variable]
 8357 |   Int2           mssgext;
      |                  ^~~~~~~
sequin1.c: In function ‘DeleteSelectedFeatureOrDescriptor’:
sequin1.c:8894:19: warning: variable ‘itemtype’ set but not used [-Wunused-but-set-variable]
 8894 |   Uint2           itemtype;
      |                   ^~~~~~~~
sequin1.c:8893:19: warning: variable ‘itemID’ set but not used [-Wunused-but-set-variable]
 8893 |   Uint4           itemID;
      |                   ^~~~~~
sequin1.c:8891:19: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 8891 |   Uint2           entityID;
      |                   ^~~~~~~~
sequin1.c: In function ‘IsolationSourceOk’:
sequin1.c:14815:11: warning: unused variable ‘specific_bad_fmt’ [-Wunused-variable]
14815 |   CharPtr specific_bad_fmt = "isolation-source should have a value like seawater, soil, etc. '%s' is not a valid isolation-source.";
      |           ^~~~~~~~~~~~~~~~
sequin1.c:14811:11: warning: unused variable ‘is_ambiguous’ [-Wunused-variable]
14811 |   Boolean is_ambiguous = FALSE;
      |           ^~~~~~~~~~~~
sequin1.c: In function ‘WizardTrackerFree’:
sequin1.c:15809:20: warning: variable ‘sep_next’ set but not used [-Wunused-but-set-variable]
15809 |   SeqEntryPtr sep, sep_next;
      |                    ^~~~~~~~
sequin1.c: In function ‘AddCodingRegionFromWizard’:
sequin1.c:15881:33: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
15881 |   SeqEntryPtr        old, psep, nsep;
      |                                 ^~~~
sequin1.c: In function ‘SetWizardTrackerBaseSrcQuals’:
sequin1.c:16157:7: warning: enumeration value ‘eVirusClass_Unknown’ not handled in switch [-Wswitch]
16157 |       switch (wiz->virus_class) {
      |       ^~~~~~
sequin1.c:16204:7: warning: enumeration value ‘eCulturedKingdom_Unknown’ not handled in switch [-Wswitch]
16204 |       switch (wiz->cultured_kingdom) {
      |       ^~~~~~
sequin1.c:16140:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
16140 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c: In function ‘SetWizardTrackerExtraSrcQuals’:
sequin1.c:16328:7: warning: enumeration value ‘eVirusClass_Unknown’ not handled in switch [-Wswitch]
16328 |       switch (wiz->virus_class) {
      |       ^~~~~~
sequin1.c:16354:7: warning: enumeration value ‘eCulturedKingdom_Unknown’ not handled in switch [-Wswitch]
16354 |       switch (wiz->cultured_kingdom) {
      |       ^~~~~~
sequin1.c:16321:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
16321 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c: In function ‘AddWizardFeatureCallback’:
sequin1.c:16687:3: warning: enumeration value ‘eVirusFeat_None’ not handled in switch [-Wswitch]
16687 |   switch (wiz->virus_feat) {
      |   ^~~~~~
sequin1.c:16687:3: warning: enumeration value ‘eVirusFeat_CDS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘GetWGSNote’:
sequin1.c:17010:11: warning: unused variable ‘fmt’ [-Wunused-variable]
17010 |   CharPtr fmt = "[%s][WGS wizard]";
      |           ^~~
sequin1.c: In function ‘FinishWizardAndLaunchSequin’:
sequin1.c:17052:5: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
17052 |     switch (wiz->wizard_type) {
      |     ^~~~~~
sequin1.c: In function ‘HaveUniqueCombinationOfQuals’:
sequin1.c:17401:15: warning: variable ‘num_quals’ set but not used [-Wunused-but-set-variable]
17401 |   Int4        num_quals;
      |               ^~~~~~~~~
sequin1.c: In function ‘GetWizardQualifierProblems’:
sequin1.c:20626:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
20626 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:20626:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘VirusQualsOk’:
sequin1.c:20931:5: warning: enumeration value ‘eVirusClass_Unknown’ not handled in switch [-Wswitch]
20931 |     switch (wiz->virus_class) {
      |     ^~~~~~
sequin1.c: In function ‘CulturedSamplesOk’:
sequin1.c:21036:5: warning: enumeration value ‘eCulturedKingdom_Unknown’ not handled in switch [-Wswitch]
21036 |     switch (wiz->cultured_kingdom) {
      |     ^~~~~~
sequin1.c: In function ‘WizardSrcQualsOk’:
sequin1.c:21347:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
21347 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c: In function ‘CreateWizardSrcQualsForm’:
sequin1.c:22401:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
22401 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:22401:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘CheckFeatureQualsUniqueness’:
sequin1.c:22719:8: warning: variable ‘num_rows’ set but not used [-Wunused-but-set-variable]
22719 |   Int4 num_rows, row_num;
      |        ^~~~~~~~
sequin1.c: In function ‘WizardFeatureQualsOk’:
sequin1.c:22810:11: warning: variable ‘num_features’ set but not used [-Wunused-but-set-variable]
22810 |   Int4    num_features;
      |           ^~~~~~~~~~~~
sequin1.c: In function ‘TabTableToMultiModTabTable’:
sequin1.c:23178:16: warning: unused variable ‘bsp’ [-Wunused-variable]
23178 |   BioseqPtr    bsp = NULL;
      |                ^~~
sequin1.c: In function ‘MultiModTableToTabTable’:
sequin1.c:23257:21: warning: variable ‘fq’ set but not used [-Wunused-but-set-variable]
23257 |   WizardFeatQualPtr fq;
      |                     ^~
sequin1.c: In function ‘ShowAllFeatureQualSequences’:
sequin1.c:23777:15: warning: variable ‘show_all’ set but not used [-Wunused-but-set-variable]
23777 |   Boolean     show_all = TRUE;
      |               ^~~~~~~~
sequin1.c: In function ‘TabTableLineFromFeature’:
sequin1.c:24725:14: warning: unused variable ‘vals’ [-Wunused-variable]
24725 |   ValNodePtr vals = NULL, q_vnp;
      |              ^~~~
sequin1.c: In function ‘PregenerateFeatures’:
sequin1.c:24775:22: warning: unused variable ‘problems’ [-Wunused-variable]
24775 |   CharPtr       PNTR problems = NULL;
      |                      ^~~~~~~~
sequin1.c: In function ‘SetQualForSequencesFromWizardList’:
sequin1.c:26026:20: warning: unused variable ‘rval’ [-Wunused-variable]
26026 |   Boolean          rval = FALSE;
      |                    ^~~~
sequin1.c: In function ‘CollectWizardSetType’:
sequin1.c:27538:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
27538 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:27538:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:27538:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘SequencingMethodToDialog’:
sequin1.c:28361:27: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
28361 |   SequencingMethodInfoPtr info;
      |                           ^~~~
sequin1.c: In function ‘CollectWizardSourceType’:
sequin1.c:28943:5: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
28943 |     switch (wiz->wizard_type) {
      |     ^~~~~~
sequin1.c:28943:5: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:28943:5: warning: enumeration value ‘eWizardType_DLoop’ not handled in switch [-Wswitch]
sequin1.c:28943:5: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘HaveWizardSourceType’:
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
28976 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_UnculturedSamples’ not handled in switch [-Wswitch]
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_DLoop’ not handled in switch [-Wswitch]
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘WizardSourceTypeForm’:
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
29038 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_UnculturedSamples’ not handled in switch [-Wswitch]
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_DLoop’ not handled in switch [-Wswitch]
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘PopulateAAPopup’:
sequin1.c:29856:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
29856 |   Uint1            first;
      |                    ^~~~~
sequin1.c: In function ‘CountAmbiProc’:
sequin1.c:31452:11: warning: unused variable ‘normal’ [-Wunused-variable]
31452 |   Int4    normal = 0;
      |           ^~~~~~
sequin1.c: In function ‘OkToTrimAmbiguous’:
sequin1.c:31765:25: warning: variable ‘p2’ set but not used [-Wunused-but-set-variable]
31765 |   GrouP                 p2 = NULL;
      |                         ^~
sequin1.c:31764:25: warning: variable ‘p1’ set but not used [-Wunused-but-set-variable]
31764 |   PrompT                p1, title = NULL, pr = NULL, pt = NULL;
      |                         ^~
sequin1.c: In function ‘WGSVectorScreen’:
sequin1.c:32753:15: warning: unused variable ‘reasons’ [-Wunused-variable]
32753 |   CharPtr     reasons[] = {"Low Quality", "Vector Contamination", "Low Quality and Vector Contamination"};
      |               ^~~~~~~
sequin1.c: In function ‘WGSSequenceAdjustment’:
sequin1.c:32916:31: warning: too many arguments for format [-Wformat-extra-args]
32916 |             fprintf (lip->fp, "%s (too short)\n", a->id, "Low Quality");
      |                               ^~~~~~~~~~~~~~~~~~
sequin1.c:32841:15: warning: unused variable ‘quit_problems’ [-Wunused-variable]
32841 |   CharPtr     quit_problems = NULL;
      |               ^~~~~~~~~~~~~
sequin1.c:32839:15: warning: unused variable ‘max_dist’ [-Wunused-variable]
32839 |   Int4        max_dist = 20;
      |               ^~~~~~~~
sequin1.c: In function ‘SetFastaText’:
sequin1.c:33423:15: warning: unused variable ‘intro’ [-Wunused-variable]
33423 |   CharPtr     intro = NULL;
      |               ^~~~~
sequin1.c: In function ‘ImportSeqCallback’:
sequin1.c:33567:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable]
33567 |   Int4    x = 0;
      |           ^
sequin1.c: In function ‘ExportWizardFASTA’:
sequin1.c:33590:17: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
33590 |   Boolean       rval = FALSE;
      |                 ^~~~
sequin1.c: In function ‘ImportWizardFASTA’:
sequin1.c:33624:15: warning: unused variable ‘changed’ [-Wunused-variable]
33624 |   Boolean     changed = FALSE;
      |               ^~~~~~~
sequin1.c: In function ‘WizardFASTAFwd’:
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
33916 |   switch (frm->wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_UnculturedSamples’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_Viruses’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_CulturedSamples’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_IGS’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘WizardFASTABack’:
sequin1.c:34038:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
34038 |   switch (frm->wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:34038:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘WizardFastaHelpBtn’:
sequin1.c:34089:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
34089 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:34089:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/accutils.h:119,
                 from sequin1.c:78:
sequin1.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/accutils.h:119,
                 from sequin1.c:78:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/accutils.h:119,
                 from sequin1.c:78:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/accutils.h:119,
                 from sequin1.c:78:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from sequin1.c:84:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from sequin1.c:89:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sequin1.c:92:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
In file included from sequin1.c:117:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c: In function ‘LaunchedGoogleEarth’:
sequin1.c:1504:11: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1504 |           system (cmmd);
      |           ^~~~~~~~~~~~~
sequin1.c: In function ‘Entrez2QueryProc’:
sequin1.c:9715:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 9715 |   system ("entrez2 &");
      |   ^~~~~~~~~~~~~~~~~~~~
At top level:
sequin1.c:33848:16: warning: ‘IsSequencingMethodOkForTSA’ defined but not used [-Wunused-function]
33848 | static Boolean IsSequencingMethodOkForTSA (WizardTrackerPtr wiz)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c:33103:16: warning: ‘s_TSAFastaExample’ defined but not used [-Wunused-variable]
33103 | static CharPtr s_TSAFastaExample[] = {
      |                ^~~~~~~~~~~~~~~~~
sequin1.c:32740:13: warning: ‘WGSVectorScreen’ defined but not used [-Wunused-function]
32740 | static void WGSVectorScreen (WizardTrackerPtr wiz, ValNodeBlockPtr block, Int4 min_length, Int4 max_dist)
      |             ^~~~~~~~~~~~~~~
sequin1.c:32059:13: warning: ‘TrimTSABases’ defined but not used [-Wunused-function]
32059 | static void TrimTSABases (SeqEntryPtr PNTR sequences)
      |             ^~~~~~~~~~~~
sequin1.c:29180:16: warning: ‘WizardAssemblyDescriptionForm’ defined but not used [-Wunused-function]
29180 | static Boolean WizardAssemblyDescriptionForm (WizardTrackerPtr wiz)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c:29123:16: warning: ‘WizardCommentForm’ defined but not used [-Wunused-function]
29123 | static Boolean WizardCommentForm (WizardTrackerPtr wiz)
      |                ^~~~~~~~~~~~~~~~~
sequin1.c:21709:16: warning: ‘s_TSASrcTblHelpMsgs’ defined but not used [-Wunused-variable]
21709 | static CharPtr s_TSASrcTblHelpMsgs[] = {
      |                ^~~~~~~~~~~~~~~~~~~
sequin1.c:21228:16: warning: ‘TSASrcQualsOk’ defined but not used [-Wunused-function]
21228 | static Boolean TSASrcQualsOk (WizardTrackerPtr wiz)
      |                ^~~~~~~~~~~~~
sequin1.c:20543:21: warning: ‘GetTSAQualifiersProblems’ defined but not used [-Wunused-function]
20543 | static CharPtr PNTR GetTSAQualifiersProblems (WizardTrackerPtr wiz)
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c:10760:13: warning: ‘ObjMgrReport’ defined but not used [-Wunused-function]
10760 | static void ObjMgrReport (IteM i)
      |             ^~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from sequin1.c:89:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
In file included from ../include/vibrant.h:133,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin1.c:53:
sequin1.c: In function ‘BioseqViewFormMenus’:
../include/vibforms.h:522:25: warning: ‘mssgupd_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  522 | #define SetFormMenuItem Nlm_SetFormMenuItem
      |                         ^~~~~~~~~~~~~~~~~~~
sequin1.c:8356:27: note: ‘mssgupd_idx’ was declared here
 8356 |   Int2           mssgupd, mssgupd_idx;
      |                           ^~~~~~~~~~~
sequin1.c: In function ‘LaunchedGoogleEarth.constprop’:
sequin1.c:1503:32: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
 1503 |           sprintf (cmmd, "open %s", path);
      |                                ^~   ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin1.c:53:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c: In function ‘SubtoolDoneFuncEx’:
sequin1.c:2000:35: warning: ‘bfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2000 |     SeqMgrClearFeatureIndexes (bfp->input_entityID, NULL);
      |                                ~~~^~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin2.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin2.c: In function ‘ValidateModifierTableSequenceIDs’:
sequin2.c:2847:16: warning: variable ‘deleted_rows’ set but not used [-Wunused-but-set-variable]
 2847 |   Int4         deleted_rows;
      |                ^~~~~~~~~~~~
sequin2.c: In function ‘ImportFastaDialog’:
sequin2.c:4587:17: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 4587 |   SeqEntryPtr   sep, new_sep_list, new_sep, test_sep;
      |                 ^~~
sequin2.c: In function ‘ExportOneRawSequence’:
sequin2.c:4859:15: warning: variable ‘buffer’ set but not used [-Wunused-but-set-variable]
 4859 |   Char        buffer [EXPORT_PAGE_WIDTH + 1];
      |               ^~~~~~
sequin2.c: In function ‘ExportOneDeltaBioseq’:
sequin2.c:4958:15: warning: variable ‘buffer’ set but not used [-Wunused-but-set-variable]
 4958 |   Char        buffer [EXPORT_PAGE_WIDTH + 1];
      |               ^~~~~~
sequin2.c: In function ‘FindBioseqWithValue’:
sequin2.c:7807:17: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
 7807 |   BioseqPtr     bsp = NULL;
      |                 ^~~
sequin2.c: In function ‘CollectNucleotideProteinAssociations’:
sequin2.c:9174:73: warning: variable ‘p_msg’ set but not used [-Wunused-but-set-variable]
 9174 |   GrouP                 h, title_grp, all_gene_grp, all_prot_grp, k, c, p_msg;
      |                                                                         ^~~~~
sequin2.c: In function ‘AddCDSToSeqEntry’:
sequin2.c:9713:37: warning: unused variable ‘scope’ [-Wunused-variable]
 9713 |   SeqEntryPtr        setsep = NULL, scope, old_scope;
      |                                     ^~~~~
sequin2.c: In function ‘GetModNameStartFromEqLoc’:
sequin2.c:11770:11: warning: variable ‘match_quote’ set but not used [-Wunused-but-set-variable]
11770 |   Char    match_quote;
      |           ^~~~~~~~~~~
sequin2.c: In function ‘GetValueFromTitle’:
sequin2.c:12334:15: warning: variable ‘is_nontext’ set but not used [-Wunused-but-set-variable]
12334 |   Boolean     is_nontext;
      |               ^~~~~~~~~~
sequin2.c: In function ‘PrepareSourceAssistantTableData’:
sequin2.c:13585:36: warning: variable ‘num_columns’ set but not used [-Wunused-but-set-variable]
13585 |   Int4               column_width, num_columns = 0;
      |                                    ^~~~~~~~~~~
sequin2.c: In function ‘SetOrganismText’:
sequin2.c:13787:30: warning: variable ‘changed_val’ set but not used [-Wunused-but-set-variable]
13787 |   Boolean                    changed_val = FALSE;
      |                              ^~~~~~~~~~~
sequin2.c: In function ‘ApplyRowListToIDAndTitleEdit’:
sequin2.c:15438:32: warning: variable ‘next_org’ set but not used [-Wunused-but-set-variable]
15438 |   CharPtr    org_loc, org_end, next_org;
      |                                ^~~~~~~~
sequin2.c: In function ‘EditOrgModColumn’:
sequin2.c:16349:26: warning: variable ‘row_list’ set but not used [-Wunused-but-set-variable]
16349 |   ValNodePtr             row_list = NULL;
      |                          ^~~~~~~~
sequin2.c: In function ‘ApplyOrgModColumn’:
sequin2.c:17198:11: warning: variable ‘is_nontext’ set but not used [-Wunused-but-set-variable]
17198 |   Boolean is_nontext;
      |           ^~~~~~~~~~
sequin2.c: In function ‘PrepareSequenceAssistantTableData’:
sequin2.c:18172:36: warning: variable ‘num_columns’ set but not used [-Wunused-but-set-variable]
18172 |   Int4               column_width, num_columns = 0;
      |                                    ^~~~~~~~~~~
sequin2.c: In function ‘UpdateIdAndTitleEditDialog’:
sequin2.c:19591:50: warning: variable ‘has_space’ set but not used [-Wunused-but-set-variable]
19591 |   Boolean    has_dups, has_missing, has_bracket, has_space, has_unrec_mods = FALSE;
      |                                                  ^~~~~~~~~
sequin2.c: In function ‘SetIDAndTitleEditDialogErrorColumn’:
sequin2.c:19741:74: warning: variable ‘has_space’ set but not used [-Wunused-but-set-variable]
19741 |   Boolean    has_dups, has_missing, has_bracket, has_unrec_mods = FALSE, has_space;
      |                                                                          ^~~~~~~~~
sequin2.c: In function ‘GetDiffDlgCoord’:
sequin2.c:20911:19: warning: variable ‘start_col’ set but not used [-Wunused-but-set-variable]
20911 |   Int4 start_row, start_col;
      |                   ^~~~~~~~~
sequin2.c:20911:8: warning: variable ‘start_row’ set but not used [-Wunused-but-set-variable]
20911 |   Int4 start_row, start_col;
      |        ^~~~~~~~~
sequin2.c: In function ‘DownloadAndDisplay’:
sequin2.c:26575:17: warning: variable ‘dbname’ set but not used [-Wunused-but-set-variable]
26575 |   CharPtr       dbname;
      |                 ^~~~~~
sequin2.c: In function ‘DownloadProc’:
sequin2.c:26725:17: warning: variable ‘dbname’ set but not used [-Wunused-but-set-variable]
26725 |   CharPtr       dbname;
      |                 ^~~~~~
sequin2.c: In function ‘LoadSecondaryAccessionNumbersPlusHistFromFile’:
sequin2.c:27908:17: warning: variable ‘need_seqid’ set but not used [-Wunused-but-set-variable]
27908 |   Boolean       need_seqid;
      |                 ^~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from sequin2.c:66:
sequin2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sequin2.c:26330:13: warning: ‘GetRawBsps’ defined but not used [-Wunused-function]
26330 | static void GetRawBsps (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~
sequin2.c:24919:1: warning: ‘SequenceAssistantValidateSegments’ defined but not used [-Wunused-function]
24919 | SequenceAssistantValidateSegments
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin2.c:10685:17: warning: ‘GetSeqIdFromSeqEntryPtr’ defined but not used [-Wunused-function]
10685 | static SeqIdPtr GetSeqIdFromSeqEntryPtr (SeqEntryPtr sep)
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
sequin2.c:8106:20: warning: ‘FindSeqEntryWithTranscriptID’ defined but not used [-Wunused-function]
 8106 | static SeqEntryPtr FindSeqEntryWithTranscriptID (SeqEntryPtr sep, CharPtr transcript_id)
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin2.c:6863:13: warning: ‘ParseDeflineToBiop’ defined but not used [-Wunused-function]
 6863 | static void ParseDeflineToBiop(CharPtr defline, BioSourcePtr biop)
      |             ^~~~~~~~~~~~~~~~~~
sequin2.c:3922:1: warning: ‘ReadOneSegSet’ defined but not used [-Wunused-function]
 3922 | ReadOneSegSet
      | ^~~~~~~~~~~~~
sequin2.c: In function ‘InsertMostUsedFeatureValNodes’:
sequin2.c:28184:22: warning: ‘new_item’ may be used uninitialized in this function [-Wmaybe-uninitialized]
28184 |       new_item->next = old_list;
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin3.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin3.c: In function ‘FarToNearProc’:
sequin3.c:542:12: warning: variable ‘olddelta’ set but not used [-Wunused-but-set-variable]
  542 |   Pointer  olddelta;
      |            ^~~~~~~~
sequin3.c: In function ‘FixLocus’:
sequin3.c:1019:15: warning: variable ‘embl_code’ set but not used [-Wunused-but-set-variable]
 1019 |  CharPtr ptr, embl_code;
      |               ^~~~~~~~~
sequin3.c: In function ‘RemoveGeneXrefsOnBioseqs’:
sequin3.c:2237:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
 2237 |   Int2               count;
      |                      ^~~~~
sequin3.c: In function ‘MakeCDS’:
sequin3.c:7040:27: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
 7040 |   SeqEntryPtr       psep, nsep, old, topsep;
      |                           ^~~~
sequin3.c: In function ‘ConvertOneCDSToMiscFeat’:
sequin3.c:9217:26: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 9217 |       || must_have_stops && !HasInternalStops (sfp))
      |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
sequin3.c: In function ‘SuppressGenesOnFeatures’:
sequin3.c:11108:20: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
11108 |   ButtoN           b;
      |                    ^
sequin3.c: In function ‘CheckForExistingMolInfo’:
sequin3.c:12443:17: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
12443 |   BioseqPtr     bsp;
      |                 ^~~
sequin3.c: In function ‘RemoveNthCDS’:
sequin3.c:19694:17: warning: variable ‘segCount’ set but not used [-Wunused-but-set-variable]
19694 |   Int4          segCount;
      |                 ^~~~~~~~
sequin3.c: In function ‘InstantiateGapFeatCallback’:
sequin3.c:20956:15: warning: variable ‘fuzz’ set but not used [-Wunused-but-set-variable]
20956 |   IntFuzzPtr  fuzz;
      |               ^~~~
sequin3.c: In function ‘GlobalDisableStrainForwarding’:
sequin3.c:23530:14: warning: unused variable ‘lip’ [-Wunused-variable]
23530 |   LogInfoPtr lip;
      |              ^~~
In file included from ../include/tax3api.h:51,
                 from sequin3.c:71:
sequin3.c: At top level:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sequin3.c:73:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sequin3.c:23279:16: warning: ‘SummarizeFieldDiff’ defined but not used [-Wunused-function]
23279 | static CharPtr SummarizeFieldDiff (FieldDiffPtr diff)
      |                ^~~~~~~~~~~~~~~~~~
sequin3.c:22333:13: warning: ‘TestSegregateByList’ defined but not used [-Wunused-function]
22333 | static void TestSegregateByList (IteM i)
      |             ^~~~~~~~~~~~~~~~~~~
sequin3.c:21921:13: warning: ‘LabelFungalRNAs’ defined but not used [-Wunused-function]
21921 | static void LabelFungalRNAs (IteM i)
      |             ^~~~~~~~~~~~~~~
sequin3.c:21906:13: warning: ‘WriteAccessionsCallback’ defined but not used [-Wunused-function]
21906 | static void WriteAccessionsCallback (BioseqPtr bsp, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
sequin3.c:21398:13: warning: ‘ModernizeGenes’ defined but not used [-Wunused-function]
21398 | static void ModernizeGenes (IteM i)
      |             ^~~~~~~~~~~~~~
sequin3.c:21371:13: warning: ‘ModernizeRNAs’ defined but not used [-Wunused-function]
21371 | static void ModernizeRNAs (IteM i)
      |             ^~~~~~~~~~~~~
sequin3.c:21344:13: warning: ‘ModernizePCRs’ defined but not used [-Wunused-function]
21344 | static void ModernizePCRs (IteM i)
      |             ^~~~~~~~~~~~~
sequin3.c:21234:13: warning: ‘TestTax3B’ defined but not used [-Wunused-function]
21234 | static void TestTax3B (IteM i)
      |             ^~~~~~~~~
sequin3.c:21228:13: warning: ‘TestTax3A’ defined but not used [-Wunused-function]
21228 | static void TestTax3A (IteM i)
      |             ^~~~~~~~~
sequin3.c:21095:13: warning: ‘NewAligmentViewer’ defined but not used [-Wunused-function]
21095 | static void NewAligmentViewer (IteM i)
      |             ^~~~~~~~~~~~~~~~~
sequin3.c:21064:13: warning: ‘AddAllDbxrefsMenuItem’ defined but not used [-Wunused-function]
21064 | static void AddAllDbxrefsMenuItem (IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~
sequin3.c:17134:16: warning: ‘s_NextQualifies’ defined but not used [-Wunused-function]
17134 | static Boolean s_NextQualifies (SeqFeatPtr sfp,
      |                ^~~~~~~~~~~~~~~
sequin3.c:14836:25: warning: ‘FsaStreamProc’ defined but not used [-Wunused-function]
14836 | static void LIBCALLBACK FsaStreamProc (
      |                         ^~~~~~~~~~~~~
sequin3.c:13705:13: warning: ‘PrepareTaxListProc’ defined but not used [-Wunused-function]
13705 | static void PrepareTaxListProc (IteM i)
      |             ^~~~~~~~~~~~~~~~~~
sequin3.c:11155:19: warning: ‘CopyGeneRef’ defined but not used [-Wunused-function]
11155 | static GeneRefPtr CopyGeneRef (GeneRefPtr srcGrp)
      |                   ^~~~~~~~~~~
sequin3.c:5388:13: warning: ‘InstantiateAssemblyGapFeats’ defined but not used [-Wunused-function]
 5388 | static void InstantiateAssemblyGapFeats (BioseqPtr bsp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin3.c:5310:16: warning: ‘ValidateAssemblyGapFeat’ defined but not used [-Wunused-function]
 5310 | static Boolean ValidateAssemblyGapFeat (SeqFeatPtr sfp, BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
sequin3.c:5268:13: warning: ‘linkEvValues’ defined but not used [-Wunused-variable]
 5268 | static Int4 linkEvValues [] = {
      |             ^~~~~~~~~~~~
sequin3.c:5253:16: warning: ‘linkEvStrings’ defined but not used [-Wunused-variable]
 5253 | static CharPtr linkEvStrings [] = {
      |                ^~~~~~~~~~~~~
sequin3.c:5237:13: warning: ‘gapTypeValues’ defined but not used [-Wunused-variable]
 5237 | static Int4 gapTypeValues [] = {
      |             ^~~~~~~~~~~~~
sequin3.c:5220:16: warning: ‘gapTypeStrings’ defined but not used [-Wunused-variable]
 5220 | static CharPtr gapTypeStrings [] = {
      |                ^~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin3.c:45:
sequin3.c: In function ‘AddMissingFieldsFromBioSample’:
../include/vibdefns.h:318:18: warning: ‘summ’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  318 | #define CheckBox Nlm_CheckBox
      |                  ^~~~~~~~~~~~
sequin3.c:23379:14: note: ‘summ’ was declared here
23379 |   CharPtr    summ, prev = NULL;
      |              ^~~~
sequin3.c: In function ‘MakeBioSampleUpdateTable’:
sequin3.c:23067:15: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23067 |     } else if (diff == sdiff) {
      |               ^
sequin3.c: In function ‘CompareWithBioSampleEx’:
sequin3.c:23188:15: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23188 |     } else if (diff == sdiff) {
      |               ^
sequin3.c: In function ‘DoFixupSegSet’:
sequin3.c:1126:18: warning: ‘%s’ directive writing up to 127 bytes into a region of size 32 [-Wformat-overflow=]
 1126 |   sprintf (str, "%sS%s", prefix, digs);
      |                  ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin3.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 2 and 144 bytes into a destination of size 32
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin3.c:1226:22: warning: ‘%s’ directive writing up to 127 bytes into a region of size 28 [-Wformat-overflow=]
 1226 |   sprintf (str, "SEG_%sS", prefix);
      |                      ^~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin3.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 133 bytes into a destination of size 32
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin4.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin4.c: In function ‘SplitSegmentedFeatsOnOneSet’:
sequin4.c:1621:20: warning: variable ‘set_sep’ set but not used [-Wunused-but-set-variable]
 1621 |   SeqEntryPtr sep, set_sep;
      |                    ^~~~~~~
sequin4.c: In function ‘RemoveOneSegSet’:
sequin4.c:2295:30: warning: variable ‘seg_bssp’ set but not used [-Wunused-but-set-variable]
 2295 |   BioseqSetPtr seg_nuc_prot, seg_bssp;
      |                              ^~~~~~~~
sequin4.c: In function ‘NewUpdateSeqAlign’:
sequin4.c:3142:20: warning: variable ‘bssp’ set but not used [-Wunused-but-set-variable]
 3142 |   BioseqSetPtr     bssp;
      |                    ^~~~
sequin4.c: In function ‘LaunchOrfViewer’:
sequin4.c:7256:9: warning: variable ‘qu’ set but not used [-Wunused-but-set-variable]
 7256 |  ButtoN qu, b1;
      |         ^~
sequin4.c: In function ‘MRnaFromCdsCallback’:
sequin4.c:7624:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 7624 |   Uint2         entityID;
      |                 ^~~~~~~~
sequin4.c: In function ‘FindNonACGT’:
sequin4.c:8773:21: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 8773 |   Int4              len;
      |                     ^~~
sequin4.c: In function ‘GetPubStatus’:
sequin4.c:10801:14: warning: variable ‘csp’ set but not used [-Wunused-but-set-variable]
10801 |   CitSubPtr  csp;
      |              ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from sequin4.c:72:
sequin4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sequin4.c:14157:13: warning: ‘CleanupTruncateByProtAlignForm’ defined but not used [-Wunused-function]
14157 | static void CleanupTruncateByProtAlignForm (GraphiC g, VoidPtr data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:13699:25: warning: ‘FeatToDeltaSeq’ defined but not used [-Wunused-function]
13699 | static Int2 LIBCALLBACK FeatToDeltaSeq (Pointer data)
      |                         ^~~~~~~~~~~~~~
sequin4.c:13659:16: warning: ‘ListRawSequencesInAlignments’ defined but not used [-Wunused-function]
13659 | static Boolean ListRawSequencesInAlignments (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:9889:13: warning: ‘PubConstraintClearText’ defined but not used [-Wunused-function]
 9889 | static void PubConstraintClearText (PubConstraintPtr pcp)
      |             ^~~~~~~~~~~~~~~~~~~~~~
sequin4.c:8853:18: warning: ‘RevStringUpper’ defined but not used [-Wunused-function]
 8853 | static void NEAR RevStringUpper (CharPtr str)
      |                  ^~~~~~~~~~~~~~
sequin4.c:8504:13: warning: ‘MakeGeneXref’ defined but not used [-Wunused-function]
 8504 | static void MakeGeneXref (SeqFeatPtr sfpr, SeqFeatPtr sfpg)
      |             ^~~~~~~~~~~~
sequin4.c:6747:13: warning: ‘AddOrfListToDoc’ defined but not used [-Wunused-function]
 6747 | static void AddOrfListToDoc(DoC doc, ValNodePtr list)
      |             ^~~~~~~~~~~~~~~
sequin4.c:3264:17: warning: ‘CorrectIDsForSeqHistAlign’ defined but not used [-Wunused-function]
 3264 | static SeqIdPtr CorrectIDsForSeqHistAlign (TAlignmentFilePtr afp, SeqEntryPtr sep)
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:3237:18: warning: ‘FindBioseqForSeqHist’ defined but not used [-Wunused-function]
 3237 | static BioseqPtr FindBioseqForSeqHist (SeqAlignPtr salp)
      |                  ^~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from sequin4.c:55:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
sequin4.c: In function ‘MakeExonsFromFeatureIntervalsVisitFunc’:
sequin4.c:5910:16: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5910 |       intron = AddIntronForInterval (bsp->length, stop, last, strand, bsp, fuzz_from, fuzz_to, part_number);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:5801:15: note: ‘strand’ was declared here
 5801 |   Uint1       strand;
      |               ^~~~~~
sequin4.c:5910:16: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5910 |       intron = AddIntronForInterval (bsp->length, stop, last, strand, bsp, fuzz_from, fuzz_to, part_number);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:5800:15: note: ‘stop’ was declared here
 5800 |   Int4        stop;
      |               ^~~~
sequin4.c:5908:16: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5908 |       intron = AddIntronForInterval (start, -1, last, strand, bsp, fuzz_from, fuzz_to, part_number);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:5799:15: note: ‘start’ was declared here
 5799 |   Int4        start;
      |               ^~~~~
sequin4.c: In function ‘ExplodeGroup.constprop’:
sequin4.c:5521:9: warning: ‘nucbsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5521 |         SetExplodedProtein (orig_prot, nucprot_bssp, nucbsp, sfp, prot_id_str_prefix, cum_offset);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin5.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin5.c: In function ‘GeneExtendFunc’:
sequin5.c:247:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
  247 |   GeneRefPtr     grp;
      |                  ^~~
sequin5.c: In function ‘RemoveGBIDsProc’:
sequin5.c:1372:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
 1372 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sequin5.c: In function ‘RemoveGBProtIDsProc’:
sequin5.c:1422:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
 1422 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sequin5.c: In function ‘RemoveGIProc’:
sequin5.c:1473:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
 1473 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sequin5.c: In function ‘SetmRNAFieldString’:
sequin5.c:6548:17: warning: variable ‘field_choice’ set but not used [-Wunused-but-set-variable]
 6548 |   Int4          field_choice;
      |                 ^~~~~~~~~~~~
sequin5.c: In function ‘GetCDSGeneProtField’:
sequin5.c:7233:11: warning: variable ‘field_choice’ set but not used [-Wunused-but-set-variable]
 7233 |   Int4    field_choice;
      |           ^~~~~~~~~~~~
sequin5.c: In function ‘GetRNAFieldString’:
sequin5.c:7628:21: warning: variable ‘field_choice’ set but not used [-Wunused-but-set-variable]
 7628 |   Int4              field_choice;
      |                     ^~~~~~~~~~~~
sequin5.c:7622:14: warning: variable ‘rrp’ set but not used [-Wunused-but-set-variable]
 7622 |   RnaRefPtr  rrp;
      |              ^~~
sequin5.c: In function ‘SetRNAFieldString’:
sequin5.c:7863:17: warning: variable ‘rrp’ set but not used [-Wunused-but-set-variable]
 7863 |   RnaRefPtr     rrp;
      |                 ^~~
sequin5.c: In function ‘BioseqConstrainedFeaturesCallback’:
sequin5.c:11293:21: warning: variable ‘cop’ set but not used [-Wunused-but-set-variable]
11293 |   ConstraintOpPtr   cop;
      |                     ^~~
sequin5.c: In function ‘SampleDialogCopy’:
sequin5.c:13545:53: warning: variable ‘last_col’ set but not used [-Wunused-but-set-variable]
13545 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                                     ^~~~~~~~
sequin5.c:13545:42: warning: variable ‘first_col’ set but not used [-Wunused-but-set-variable]
13545 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                          ^~~~~~~~~
sequin5.c: In function ‘TestFeatureFieldChoice’:
sequin5.c:14066:31: warning: variable ‘dlg’ set but not used [-Wunused-but-set-variable]
14066 |   FeatureFieldChoiceDialogPtr dlg;
      |                               ^~~
sequin5.c: In function ‘CreateClickableListForSourceFeats’:
sequin5.c:14854:27: warning: variable ‘insertion_seq_txt’ set but not used [-Wunused-but-set-variable]
14854 |   CharPtr transposon_txt, insertion_seq_txt, note_txt;
      |                           ^~~~~~~~~~~~~~~~~
sequin5.c:14854:11: warning: variable ‘transposon_txt’ set but not used [-Wunused-but-set-variable]
14854 |   CharPtr transposon_txt, insertion_seq_txt, note_txt;
      |           ^~~~~~~~~~~~~~
sequin5.c: In function ‘CDSToMiscFeatConvertFunc’:
sequin5.c:15014:24: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
15014 |   Boolean              rval = FALSE;
      |                        ^~~~
sequin5.c: In function ‘GetRegionOpts’:
sequin5.c:15152:25: warning: unused variable ‘rval’ [-Wunused-variable]
15152 |   Boolean               rval = FALSE;
      |                         ^~~~
sequin5.c: In function ‘NewConvertFeaturesByList’:
sequin5.c:15322:14: warning: unused variable ‘only_pseudo’ [-Wunused-variable]
15322 |   Boolean    only_pseudo = FALSE;
      |              ^~~~~~~~~~~
sequin5.c: In function ‘FeatureRemoveOrConvertAction’:
sequin5.c:15588:25: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
15588 |   SeqFeatPtr            sfp;
      |                         ^~~
sequin5.c: In function ‘CDSGeneProtAECRDialog’:
sequin5.c:18564:25: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
18564 |   SeqEntryPtr           sep;
      |                         ^~~
sequin5.c: In function ‘CDSGeneProtConvert’:
sequin5.c:18931:18: warning: unused variable ‘str_dst’ [-Wunused-variable]
18931 |   CharPtr        str_dst = NULL;
      |                  ^~~~~~~
sequin5.c: In function ‘CDSGeneProtParse’:
sequin5.c:19141:18: warning: variable ‘avd’ set but not used [-Wunused-but-set-variable]
19141 |   ApplyValueData avd;
      |                  ^~~
sequin5.c: In function ‘RNAQualListDialog’:
sequin5.c:21603:22: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
21603 |   SeqEntryPtr        sep;
      |                      ^~~
sequin5.c: In function ‘GetRNAFeatureList’:
sequin5.c:21792:14: warning: variable ‘matches’ set but not used [-Wunused-but-set-variable]
21792 |   Boolean    matches;
      |              ^~~~~~~
sequin5.c: In function ‘RNAQualConvertSwapParseList’:
sequin5.c:21924:26: warning: variable ‘avd’ set but not used [-Wunused-but-set-variable]
21924 |   ApplyValueData         avd;
      |                          ^~~
sequin5.c: In function ‘RNAQualEditRemoveList’:
sequin5.c:22021:20: warning: unused variable ‘rval’ [-Wunused-variable]
22021 |   Boolean          rval = TRUE;
      |                    ^~~~
sequin5.c: In function ‘GetGBQualSampleName’:
sequin5.c:22729:14: warning: variable ‘num_feature_choices’ set but not used [-Wunused-but-set-variable]
22729 |   Int4       num_feature_choices;
      |              ^~~~~~~~~~~~~~~~~~~
sequin5.c: In function ‘ConvertGeneLocusTagToOldLocusTagCallback’:
sequin5.c:22964:28: warning: variable ‘mp’ set but not used [-Wunused-but-set-variable]
22964 |   LocusTagToOldLocusTagPtr mp;
      |                            ^~
sequin5.c: In function ‘NewSegregateBioseqSet’:
sequin5.c:26425:22: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
26425 |   PrompT             p, p2;
      |                      ^
sequin5.c: In function ‘CompareBulkRows’:
sequin5.c:27910:8: warning: variable ‘col’ set but not used [-Wunused-but-set-variable]
27910 |   Int4 col;
      |        ^~~
sequin5.c: In function ‘ResortBulkEditorRows’:
sequin5.c:28177:20: warning: unused variable ‘matches’ [-Wunused-variable]
28177 |   ValNodePtr       matches = NULL, vnp;
      |                    ^~~~~~~
sequin5.c:28174:26: warning: unused variable ‘last_inserted’ [-Wunused-variable]
28174 |   Int4 row_num, sub_num, last_inserted = 0, comp, col;
      |                          ^~~~~~~~~~~~~
sequin5.c: In function ‘UpdateBulkEdDisplay’:
sequin5.c:29258:17: warning: unused variable ‘text_len’ [-Wunused-variable]
29258 |   Int4       i, text_len = 0, sub_num;
      |                 ^~~~~~~~
sequin5.c: In function ‘AddColumnToRowList’:
sequin5.c:29993:11: warning: unused variable ‘m’ [-Wunused-variable]
29993 |   Int4 i, m = 0, f = 0, num_columns = 1;
      |           ^
sequin5.c: In function ‘ApplyBulkEditCommon’:
sequin5.c:30418:23: warning: unused variable ‘need_redraw’ [-Wunused-variable]
30418 |   Boolean             need_redraw = FALSE;
      |                       ^~~~~~~~~~~
sequin5.c: In function ‘CopyAllFieldsFromList’:
sequin5.c:30773:8: warning: unused variable ‘num_full’ [-Wunused-variable]
30773 |   Int4 num_full = 0;
      |        ^~~~~~~~
sequin5.c: In function ‘BulkEditorObjectList’:
sequin5.c:32741:22: warning: unused variable ‘subtype’ [-Wunused-variable]
32741 |   Uint1              subtype = 0;
      |                      ^~~~~~~
sequin5.c: In function ‘BulkEditorBaseForm’:
sequin5.c:32798:22: warning: variable ‘field_list’ set but not used [-Wunused-but-set-variable]
32798 |   BulkEdFieldPtr     field_list = NULL;
      |                      ^~~~~~~~~~
sequin5.c: In function ‘GetSpecificHostCorrectionCategory’:
sequin5.c:33567:22: warning: unused variable ‘fmt’ [-Wunused-variable]
33567 |   CharPtr            fmt = "Unable to suggest correction for '%s'";
      |                      ^~~
In file included from ../include/tax3api.h:51,
                 from sequin5.c:78:
sequin5.c: At top level:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sequin5.c:32057:13: warning: ‘BulkSrcSetOrgModDescTF’ defined but not used [-Wunused-function]
32057 | static void BulkSrcSetOrgModDescTF (Pointer target, Pointer data, Uint2 mod_type)
      |             ^~~~~~~~~~~~~~~~~~~~~~
sequin5.c:32036:16: warning: ‘BulkSrcGetOrgModDescTF’ defined but not used [-Wunused-function]
32036 | static Pointer BulkSrcGetOrgModDescTF (Uint1 data_choice, Pointer data, Uint2 mod_type)
      |                ^~~~~~~~~~~~~~~~~~~~~~
sequin5.c:31734:23: warning: ‘GetBulkEditorFieldListForFeature’ defined but not used [-Wunused-function]
31734 | static BulkEdFieldPtr GetBulkEditorFieldListForFeature (SeqFeatPtr sfp)
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin5.c:31268:16: warning: ‘BulkGetPseudo’ defined but not used [-Wunused-function]
31268 | static Pointer BulkGetPseudo (Pointer data)
      |                ^~~~~~~~~~~~~
sequin5.c:31257:13: warning: ‘BulkSetPseudo’ defined but not used [-Wunused-function]
31257 | static void BulkSetPseudo (Pointer target, Pointer val)
      |             ^~~~~~~~~~~~~
sequin5.c:31246:16: warning: ‘BulkReleaseTrueFalse’ defined but not used [-Wunused-function]
31246 | static Pointer BulkReleaseTrueFalse (Pointer p)
      |                ^~~~~~~~~~~~~~~~~~~~
sequin5.c:31080:15: warning: ‘BulkNucLocationDialog’ defined but not used [-Wunused-function]
31080 | static DialoG BulkNucLocationDialog (GrouP g, CharPtr name, SeqEntryPtr sep)
      |               ^~~~~~~~~~~~~~~~~~~~~
sequin5.c:28858:28: warning: ‘TwoFieldBulkEditNew’ defined but not used [-Wunused-function]
28858 | static TwoFieldBulkEditPtr TwoFieldBulkEditNew (void)
      |                            ^~~~~~~~~~~~~~~~~~~
sequin5.c:28605:28: warning: ‘OneFieldBulkEditNew’ defined but not used [-Wunused-function]
28605 | static OneFieldBulkEditPtr OneFieldBulkEditNew (void)
      |                            ^~~~~~~~~~~~~~~~~~~
sequin5.c:28101:13: warning: ‘FlatCopyRows’ defined but not used [-Wunused-function]
28101 | static Int4 FlatCopyRows (BulkEditorRowPtr new_rows, BulkEditorRowPtr orig_rows, BulkEdFieldPtr field_list)
      |             ^~~~~~~~~~~~
sequin5.c:27569:13: warning: ‘FreeBulkEditorValuesList’ defined but not used [-Wunused-function]
27569 | static void FreeBulkEditorValuesList (ValNodePtr PNTR values_list, Int4 num_rows, BulkEdFieldPtr field_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
sequin5.c:21287:23: warning: ‘AECRRNAQualFree’ defined but not used [-Wunused-function]
21287 | static AECRRNAQualPtr AECRRNAQualFree (AECRRNAQualPtr ap)
      |                       ^~~~~~~~~~~~~~~
sequin5.c:12796:25: warning: ‘ParseFieldSrcFree’ defined but not used [-Wunused-function]
12796 | static ParseFieldSrcPtr ParseFieldSrcFree (ParseFieldSrcPtr pfsp)
      |                         ^~~~~~~~~~~~~~~~~
sequin5.c:438:13: warning: ‘ProcessOligo’ defined but not used [-Wunused-function]
  438 | static void ProcessOligo (SeqEntryPtr sep, CharPtr sequence, CharPtr title)
      |             ^~~~~~~~~~~~
sequin5.c:171:16: warning: ‘GetSequenceString’ defined but not used [-Wunused-function]
  171 | static CharPtr GetSequenceString (BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~
sequin5.c:88:13: warning: ‘CommonLaunchBioseqViewer’ defined but not used [-Wunused-function]
   88 | static void CommonLaunchBioseqViewer (SeqEntryPtr sep, CharPtr path, Boolean directToEditor)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from sequin5.c:53:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
sequin5.c: In function ‘EditLocusActnProc’:
sequin5.c:605:28: warning: ‘%s’ directive writing up to 15 bytes into a region of size between 13 and 76 [-Wformat-overflow=]
  605 |           sprintf (tmp, "%s%s", str, num);
      |                            ^~        ~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin5.c:47:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 1 and 79 bytes into a destination of size 76
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin5.c: In function ‘ConvertDescriptorFieldCallback’:
sequin5.c:5784:18: warning: ‘dst_text’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5784 |     avd.new_text = dst_text;
      |     ~~~~~~~~~~~~~^~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin5.c:47:
sequin5.c: In function ‘ApplyEditConvertRemoveCombo.constprop’:
../include/vibdefns.h:535:22: warning: ‘m’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  535 | #define AlignObjects Nlm_AlignObjects
      |                      ^~~~~~~~~~~~~~~~
sequin5.c:17563:42: note: ‘m’ was declared here
17563 |   GrouP                     h, g1, k, n, m;
      |                                          ^
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin6.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin6.c: In function ‘RemoveOrgModText’:
sequin6.c:3069:35: warning: variable ‘next_mod’ set but not used [-Wunused-but-set-variable]
 3069 |   OrgModPtr mod, prev_mod = NULL, next_mod;
      |                                   ^~~~~~~~
sequin6.c: In function ‘TrimCodingRegionsFoNsCallback’:
sequin6.c:4576:31: warning: unused variable ‘cut’ [-Wunused-variable]
 4576 |   SeqLocPtr          slp, sp, cut;
      |                               ^~~
sequin6.c:4576:22: warning: unused variable ‘slp’ [-Wunused-variable]
 4576 |   SeqLocPtr          slp, sp, cut;
      |                      ^~~
sequin6.c: In function ‘GapLocationsFromNs’:
sequin6.c:4750:15: warning: variable ‘seq_ext’ set but not used [-Wunused-but-set-variable]
 4750 |   ValNodePtr  seq_ext;
      |               ^~~~~~~
sequin6.c:4749:15: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 4749 |   Int4        len;
      |               ^~~
sequin6.c: In function ‘ApplyBioFeatToList’:
sequin6.c:6400:23: warning: variable ‘oldscope’ set but not used [-Wunused-but-set-variable]
 6400 |   SeqEntryPtr   nsep, oldscope;
      |                       ^~~~~~~~
sequin6.c: In function ‘RNAWordsFromString’:
sequin6.c:13298:32: warning: variable ‘last_pos’ set but not used [-Wunused-but-set-variable]
13298 |   CharPtr     last_hit = NULL, last_pos = NULL;
      |                                ^~~~~~~~
sequin6.c:13298:15: warning: variable ‘last_hit’ set but not used [-Wunused-but-set-variable]
13298 |   CharPtr     last_hit = NULL, last_pos = NULL;
      |               ^~~~~~~~
sequin6.c: In function ‘FeatureEditorActionGroup’:
sequin6.c:14382:15: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
14382 |   SeqEntryPtr sep;
      |               ^~~
sequin6.c: In function ‘DoPartialFeatureProc’:
sequin6.c:14631:16: warning: variable ‘dash_at_end’ set but not used [-Wunused-but-set-variable]
14631 |   Boolean      dash_at_end = FALSE;
      |                ^~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from sequin6.c:60:
sequin6.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sequin6.c:9215:13: warning: ‘LongestMatch’ defined but not used [-Wunused-function]
 9215 | static Int2 LongestMatch (
      |             ^~~~~~~~~~~~
sequin6.c:9121:13: warning: ‘RevcompString’ defined but not used [-Wunused-function]
 9121 | static void RevcompString (
      |             ^~~~~~~~~~~~~
sequin6.c:9093:13: warning: ‘ExtractString’ defined but not used [-Wunused-function]
 9093 | static void ExtractString (
      |             ^~~~~~~~~~~~~
sequin6.c:5459:1: warning: ‘RemoveTerminalNsFromLocation’ defined but not used [-Wunused-function]
 5459 | RemoveTerminalNsFromLocation
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin6.c:5046:13: warning: ‘AppendFirstToFeat’ defined but not used [-Wunused-function]
 5046 | static void AppendFirstToFeat (SeqFeatPtr sfp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin6.c:45:
sequin6.c: In function ‘CreateFieldSubfieldDlg.constprop’:
../include/vibdefns.h:535:22: warning: ‘g2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  535 | #define AlignObjects Nlm_AlignObjects
      |                      ^~~~~~~~~~~~~~~~
sequin6.c:430:29: note: ‘g2’ was declared here
  430 |   GrouP               p, g, g2;
      |                             ^~
sequin7.c:46:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
   46 | static char *date_of_compilation = __DATE__;
      |                                    ^~~~~~~~
sequin7.c:47:36: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
   47 | static char *time_of_compilation = __TIME__;
      |                                    ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin7.c:53:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin7.c: In function ‘GeneExtendFunc’:
sequin7.c:959:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
  959 |   GeneRefPtr     grp;
      |                  ^~~
sequin7.c: In function ‘FinishConvertingToCDS’:
sequin7.c:2771:17: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
 2771 |   SeqEntryPtr   nsep;
      |                 ^~~~
sequin7.c: In function ‘SetBestFrame’:
sequin7.c:5218:26: warning: variable ‘seq_str2’ set but not used [-Wunused-but-set-variable]
 5218 |   CharPtr      seq_str1, seq_str2;
      |                          ^~~~~~~~
sequin7.c:5218:16: warning: variable ‘seq_str1’ set but not used [-Wunused-but-set-variable]
 5218 |   CharPtr      seq_str1, seq_str2;
      |                ^~~~~~~~
sequin7.c: In function ‘RemoveProteinsAndOptionallyRenormalize’:
sequin7.c:5679:18: warning: unused variable ‘tmp’ [-Wunused-variable]
 5679 |   ValNodePtr     tmp;
      |                  ^~~
sequin7.c:5675:18: warning: unused variable ‘ompc’ [-Wunused-variable]
 5675 |   OMProcControl  ompc;
      |                  ^~~~
sequin7.c:5672:18: warning: unused variable ‘itemID’ [-Wunused-variable]
 5672 |   Uint4          itemID;
      |                  ^~~~~~
sequin7.c:5671:18: warning: unused variable ‘bsp’ [-Wunused-variable]
 5671 |   BioseqPtr      bsp;
      |                  ^~~
sequin7.c: In function ‘RNABlastOptionNew’:
sequin7.c:7045:17: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
 7045 |  Int2           rval;
      |                 ^~~~
sequin7.c: In function ‘GetSubListForRNAStrandCorrection’:
sequin7.c:7325:27: warning: variable ‘found_id’ set but not used [-Wunused-but-set-variable]
 7325 |   Boolean                 found_id;
      |                           ^~~~~~~~
sequin7.c: In function ‘ShowClickableItemListEx’:
sequin7.c:9473:28: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9473 |   SeqEntryPtr              sep;
      |                            ^~~
sequin7.c: In function ‘ChooseFeaturesForConversion’:
sequin7.c:9614:28: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9614 |   SeqEntryPtr              sep;
      |                            ^~~
sequin7.c: In function ‘GetTableOptions’:
sequin7.c:13793:30: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
13793 |   SeqEntryPtr                sep;
      |                              ^~~
sequin7.c: In function ‘RemoveCDSandmRNAForGene’:
sequin7.c:14076:27: warning: variable ‘prev_xref’ set but not used [-Wunused-but-set-variable]
14076 |   SeqFeatXrefPtr    xref, prev_xref, next_xref;
      |                           ^~~~~~~~~
sequin7.c: In function ‘CombineToCreatePseudoGene’:
sequin7.c:14159:48: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
14159 |                  || best_left == fcontext.left && best_right < fcontext.right) {
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c: In function ‘TrimTaxFix’:
sequin7.c:15679:46: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
15679 |       || word_break - t->suggested_fix == 10 && StringNICmp (t->suggested_fix, "uncultured ", 11) == 0) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c: In function ‘FindBestNTrimSites’:
sequin7.c:16522:21: warning: unused variable ‘trim_list’ [-Wunused-variable]
16522 |   ValNodePtr        trim_list = NULL;
      |                     ^~~~~~~~~
sequin7.c: In function ‘BarcodeBlastOptionNew’:
sequin7.c:16791:17: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
16791 |  Int2           rval;
      |                 ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sequin7.c:74:
sequin7.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sequin7.c:77:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sequin7.c: In function ‘GetSubListForRNAStrandCorrection’:
sequin7.c:7390:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 7390 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
sequin7.c:14322:13: warning: ‘FindBadLatLonSourceFeat’ defined but not used [-Wunused-function]
14322 | static void FindBadLatLonSourceFeat (SeqFeatPtr sfp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:12208:13: warning: ‘RemoveBarcodeKeywordsFromLowTrace’ defined but not used [-Wunused-function]
12208 | static void RemoveBarcodeKeywordsFromLowTrace (ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:6629:16: warning: ‘DoesBioseqMatchStringConstraint’ defined but not used [-Wunused-function]
 6629 | static Boolean DoesBioseqMatchStringConstraint (BioseqPtr bsp, StringConstraintXPtr scp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:4781:13: warning: ‘RemoveMultipleTitles’ defined but not used [-Wunused-function]
 4781 | static void RemoveMultipleTitles (SeqEntryPtr sep, Pointer mydata, Int4 index, Int2 indent)
      |             ^~~~~~~~~~~~~~~~~~~~
sequin7.c:47:14: warning: ‘time_of_compilation’ defined but not used [-Wunused-variable]
   47 | static char *time_of_compilation = __TIME__;
      |              ^~~~~~~~~~~~~~~~~~~
sequin7.c: In function ‘CombineToCreatePseudoGene’:
sequin7.c:13926:9: warning: ‘int_strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13924 |     if (int_left <= fcontext.left
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~
13925 |         && int_right >= fcontext.right
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
13926 |         && ((strand == Seq_strand_minus && fcontext.strand == Seq_strand_minus)
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
13927 |             || (strand != Seq_strand_minus && fcontext.strand != Seq_strand_minus))) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:14127:21: note: ‘int_strand’ was declared here
14127 |   Uint1             int_strand;
      |                     ^~~~~~~~~~
sequin7.c:14159:48: warning: ‘best_right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14159 |                  || best_left == fcontext.left && best_right < fcontext.right) {
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:14159:18: warning: ‘best_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14157 |       } else if (feat_list == NULL
      |                  ~~~~~~~~~~~~~~~~~
14158 |                  || best_left > fcontext.left
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
14159 |                  || best_left == fcontext.left && best_right < fcontext.right) {
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin8.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin8.c: In function ‘PopulateAAPopup’:
sequin8.c:1198:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 1198 |   Uint1            first;
      |                    ^~~~~
sequin8.c: In function ‘SelectBestRepeatsFromList’:
sequin8.c:7867:18: warning: variable ‘best_len’ set but not used [-Wunused-but-set-variable]
 7867 |   Int4           best_len;
      |                  ^~~~~~~~
sequin8.c:7862:18: warning: variable ‘strand2’ set but not used [-Wunused-but-set-variable]
 7862 |   Uint1 strand1, strand2;
      |                  ^~~~~~~
sequin8.c:7862:9: warning: variable ‘strand1’ set but not used [-Wunused-but-set-variable]
 7862 |   Uint1 strand1, strand2;
      |         ^~~~~~~
sequin8.c: In function ‘ExamineAln’:
sequin8.c:8328:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 8328 |   Int4 len, num_aln = 0;
      |        ^~~
sequin8.c: In function ‘FindIntervalConflict’:
sequin8.c:10165:39: warning: self-comparison always evaluates to true [-Wtautological-compare]
10165 |   } else if (left2 <= left1 && right2 >= right2) {
      |                                       ^~
sequin8.c: In function ‘BuildConflictLists’:
sequin8.c:10507:69: warning: self-comparison always evaluates to false [-Wtautological-compare]
10507 |         if (tpa_conflict != eIntervalConflict_none || prim_conflict != prim_conflict) {
      |                                                                     ^~
sequin8.c:10513:69: warning: self-comparison always evaluates to false [-Wtautological-compare]
10513 |         if (tpa_conflict != eIntervalConflict_none || prim_conflict != prim_conflict) {
      |                                                                     ^~
sequin8.c: In function ‘ScrollToDiscrepancyItem’:
sequin8.c:14861:17: warning: variable ‘special_flag’ set but not used [-Wunused-but-set-variable]
14861 |   Boolean       special_flag = FALSE;
      |                 ^~~~~~~~~~~~
sequin8.c: In function ‘SortVnpByLinkStatus’:
sequin8.c:17767:33: warning: self-comparison always evaluates to false [-Wtautological-compare]
17767 |     } else if (fcontext2.itemID < fcontext2.itemID) {
      |                                 ^
sequin8.c: In function ‘SortVnpBymRNAPos’:
sequin8.c:17784:22: warning: variable ‘mrna2’ set but not used [-Wunused-but-set-variable]
17784 |   SeqFeatPtr  mrna1, mrna2;
      |                      ^~~~~
sequin8.c:17784:15: warning: variable ‘mrna1’ set but not used [-Wunused-but-set-variable]
17784 |   SeqFeatPtr  mrna1, mrna2;
      |               ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sequin8.c:57:
sequin8.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sequin8.c:63:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sequin8.c:18941:19: warning: ‘DivideClickableItemListByEntityID’ defined but not used [-Wunused-function]
18941 | static ValNodePtr DivideClickableItemListByEntityID (ValNodePtr clickable_list)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:14351:13: warning: ‘VisitFeaturesInViewedBioseqs’ defined but not used [-Wunused-function]
14351 | static void VisitFeaturesInViewedBioseqs (Pointer userdata, VisitFeaturesFunc callback)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:12559:13: warning: ‘MakeProteinTitlesInSequinStyle’ defined but not used [-Wunused-function]
12559 | static void MakeProteinTitlesInSequinStyle (Uint2 entityID, SeqEntryPtr sep)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:12367:13: warning: ‘ShowAssemblyAlignment’ defined but not used [-Wunused-function]
12367 | static void ShowAssemblyAlignment (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~~~~~~~
sequin8.c:8326:13: warning: ‘ExamineAln’ defined but not used [-Wunused-function]
 8326 | static void ExamineAln (SeqAlignPtr sap)
      |             ^~~~~~~~~~
sequin8.c:7262:16: warning: ‘DoesFirstRepeatContainAllOtherRepeats’ defined but not used [-Wunused-function]
 7262 | static Boolean DoesFirstRepeatContainAllOtherRepeats (ValNodePtr start, ValNodePtr stop)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:6810:16: warning: ‘DoesRowContainPoint’ defined but not used [-Wunused-function]
 6810 | static Boolean DoesRowContainPoint (SeqAlignRowPtr row, Int4 point)
      |                ^~~~~~~~~~~~~~~~~~~
sequin8.c:6475:13: warning: ‘CKA_ShowAln’ defined but not used [-Wunused-function]
 6475 | static void CKA_ShowAln(SeqAlignPtr sap, CKA_AccPtr acc_head)
      |             ^~~~~~~~~~~
sequin8.c:6269:16: warning: ‘CKA_ValidateSeqAlign’ defined but not used [-Wunused-function]
 6269 | static Boolean CKA_ValidateSeqAlign(SeqAlignPtr sap, CKA_AccPtr acc_head, Int4 bioseqlen, ValNodePtr PNTR errors)
      |                ^~~~~~~~~~~~~~~~~~~~
sequin8.c:1538:18: warning: ‘SqnGetBioseqGivenSeqLoc’ defined but not used [-Wunused-function]
 1538 | static BioseqPtr SqnGetBioseqGivenSeqLoc (SeqLocPtr slp, Uint2 entityID)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:536:13: warning: ‘FixReadingFrame’ defined but not used [-Wunused-function]
  536 | static void FixReadingFrame (
      |             ^~~~~~~~~~~~~~~
sequin8.c:309:13: warning: ‘ExtendOnePartialFeatureToEndOrGap’ defined but not used [-Wunused-function]
  309 | static void ExtendOnePartialFeatureToEndOrGap (SeqFeatPtr sfp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin9.c: In function ‘DoVecScreens’:
sequin9.c:629:19: warning: variable ‘hits’ set but not used [-Wunused-but-set-variable]
  629 |   Int2            hits;
      |                   ^~~~
sequin9.c: In function ‘AcceptArgumentFormProc’:
sequin9.c:1529:18: warning: variable ‘choice’ set but not used [-Wunused-but-set-variable]
 1529 |   Int2           choice;
      |                  ^~~~~~
sequin9.c: In function ‘ExtendBothEnds’:
sequin9.c:4838:17: warning: variable ‘oldbsp’ set but not used [-Wunused-but-set-variable]
 4838 |   BioseqPtr     oldbsp;
      |                 ^~~~~~
sequin9.c: In function ‘Extend5Prime’:
sequin9.c:4906:17: warning: variable ‘oldbsp’ set but not used [-Wunused-but-set-variable]
 4906 |   BioseqPtr     oldbsp;
      |                 ^~~~~~
sequin9.c: In function ‘Extend3Prime’:
sequin9.c:4966:17: warning: variable ‘oldbsp’ set but not used [-Wunused-but-set-variable]
 4966 |   BioseqPtr     oldbsp;
      |                 ^~~~~~
sequin9.c: In function ‘FixProteinString’:
sequin9.c:5177:16: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5177 |   Int4         start, stop, new_stop, prot_len;
      |                ^~~~~
sequin9.c: In function ‘ShiftStopForLengthChange’:
sequin9.c:5254:13: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5254 |   Int4      start, stop, new_stop;
      |             ^~~~~
sequin9.c: In function ‘ExtendProtein5’:
sequin9.c:5447:23: warning: variable ‘new_stop’ set but not used [-Wunused-but-set-variable]
 5447 |   Int4          stop, new_stop;
      |                       ^~~~~~~~
sequin9.c: In function ‘PrepareUpdateAlignmentForProtein’:
sequin9.c:5975:17: warning: variable ‘changed_frame’ set but not used [-Wunused-but-set-variable]
 5975 |   Boolean       changed_frame;
      |                 ^~~~~~~~~~~~~
sequin9.c: In function ‘DrawAlignDiffs’:
sequin9.c:7468:20: warning: variable ‘len2’ set but not used [-Wunused-but-set-variable]
 7468 |   Int4       len1, len2, i;
      |                    ^~~~
sequin9.c:7468:14: warning: variable ‘len1’ set but not used [-Wunused-but-set-variable]
 7468 |   Int4       len1, len2, i;
      |              ^~~~
sequin9.c: In function ‘MakeAlignDetails’:
sequin9.c:7603:12: warning: variable ‘aln_length’ set but not used [-Wunused-but-set-variable]
 7603 |   Int4     aln_length;
      |            ^~~~~~~~~~
sequin9.c: In function ‘MakeAlignSequence’:
sequin9.c:7652:56: warning: variable ‘to’ set but not used [-Wunused-but-set-variable]
 7652 |   Int4       aln_length, len, lens, start, stop, from, to, i, j;
      |                                                        ^~
sequin9.c:7652:50: warning: variable ‘from’ set but not used [-Wunused-but-set-variable]
 7652 |   Int4       aln_length, len, lens, start, stop, from, to, i, j;
      |                                                  ^~~~
sequin9.c: In function ‘DrawUpdateAlignmentDiffs’:
sequin9.c:12920:20: warning: variable ‘len2’ set but not used [-Wunused-but-set-variable]
12920 |   Int4       len1, len2, i;
      |                    ^~~~
sequin9.c:12920:14: warning: variable ‘len1’ set but not used [-Wunused-but-set-variable]
12920 |   Int4       len1, len2, i;
      |              ^~~~
sequin9.c: In function ‘MakeAlignmentDetailsPicture’:
sequin9.c:13005:12: warning: variable ‘aln_length’ set but not used [-Wunused-but-set-variable]
13005 |   Int4     aln_length;
      |            ^~~~~~~~~~
sequin9.c: In function ‘MakeUpdateAlignmentSequenceString’:
sequin9.c:13087:44: warning: variable ‘to’ set but not used [-Wunused-but-set-variable]
13087 |   Int4       len, lens, start, stop, from, to, i, j;
      |                                            ^~
sequin9.c:13087:38: warning: variable ‘from’ set but not used [-Wunused-but-set-variable]
13087 |   Int4       len, lens, start, stop, from, to, i, j;
      |                                      ^~~~
sequin9.c: In function ‘SetPreviewSequenceSelectionByPosition’:
sequin9.c:15261:46: warning: variable ‘curr_scroll’ set but not used [-Wunused-but-set-variable]
15261 |   Int4                              prevrow, curr_scroll, max_scroll;
      |                                              ^~~~~~~~~~~
sequin9.c: In function ‘DoTestUpdateOneSequence’:
sequin9.c:16366:30: warning: variable ‘update_bsp’ set but not used [-Wunused-but-set-variable]
16366 |   BioseqPtr                  update_bsp = NULL;
      |                              ^~~~~~~~~~
sequin9.c:16365:30: warning: variable ‘update_entityID’ set but not used [-Wunused-but-set-variable]
16365 |   Uint2                      update_entityID = 0;
      |                              ^~~~~~~~~~~~~~~
sequin9.c: In function ‘UpdateAllSequences’:
sequin9.c:16656:30: warning: unused variable ‘update_entityID’ [-Wunused-variable]
16656 |   Uint2                      update_entityID = 0;
      |                              ^~~~~~~~~~~~~~~
sequin9.c:16655:30: warning: unused variable ‘update_bsp’ [-Wunused-variable]
16655 |   BioseqPtr                  update_bsp = NULL;
      |                              ^~~~~~~~~~
sequin9.c: In function ‘CleanupUpdateMultiSequence’:
sequin9.c:16976:30: warning: unused variable ‘entityIDList’ [-Wunused-variable]
16976 |   ValNodePtr                 entityIDList = NULL;
      |                              ^~~~~~~~~~~~
sequin9.c: In function ‘RemoveIdenticalUpdates’:
sequin9.c:17219:30: warning: unused variable ‘update_entityID’ [-Wunused-variable]
17219 |   Uint2                      update_entityID = 0;
      |                              ^~~~~~~~~~~~~~~
sequin9.c: In function ‘UpdateSequenceViaDownload’:
sequin9.c:18323:15: warning: variable ‘is_na’ set but not used [-Wunused-but-set-variable]
18323 |   Boolean     is_na;
      |               ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from sequin9.c:47:
sequin9.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from sequin9.c:50:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from sequin9.c:50:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from sequin9.c:50:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from sequin9.c:50:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from sequin9.c:56:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
sequin9.c:215:13: warning: ‘TruncateCDS’ declared ‘static’ but never defined [-Wunused-function]
  215 | static void TruncateCDS (SeqFeatPtr sfp, Uint1 frame, BioseqPtr pbsp);
      |             ^~~~~~~~~~~
sequin9.c:16618:29: warning: ‘FeatureUpdateNew’ defined but not used [-Wunused-function]
16618 | static FeatureUpdateInfoPtr FeatureUpdateNew (BioseqPtr orig_bsp, BioseqPtr update_bsp)
      |                             ^~~~~~~~~~~~~~~~
sequin9.c:1466:16: warning: ‘StrSaveNoNullEncodeSpaces’ defined but not used [-Wunused-function]
 1466 | static CharPtr StrSaveNoNullEncodeSpaces (CharPtr from)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c: In function ‘ListIds’:
sequin9.c:16197:14: warning: ‘bssp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16197 |       for (s = bssp->seq_set; s != NULL; s = s->next) {
      |            ~~^~~~~~~~~~~~~~~
sequin9.c: In function ‘AcceptArgumentFormProc’:
sequin9.c:1670:39: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1670 |                   sprintf (cpy, "%s=%s", upp->param, last);
      |                                       ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1684:37: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1684 |                 sprintf (cpy, "%s=%s", upp->param, last);
      |                                     ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1635:39: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1635 |                   sprintf (cpy, "%s=%s", upp->param, last);
      |                                       ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1649:37: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1649 |                 sprintf (cpy, "%s=%s", upp->param, last);
      |                                     ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1600:39: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1600 |                   sprintf (cpy, "%s=%s", upp->param, last);
      |                                       ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1614:37: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1614 |                 sprintf (cpy, "%s=%s", upp->param, last);
      |                                     ^
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c: In function ‘TruncateSeqGraphValues.isra’:
sequin9.c:3192:14: warning: ‘fmax’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3192 |           if (((FloatHiPtr)new_values)[newpos] > fmax) {
      |              ^
sequin9.c:3195:14: warning: ‘fmin’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3195 |           if (((FloatHiPtr)new_values)[newpos] < fmin) {
      |              ^
sequin9.c: In function ‘PrepareUpdateAlignmentForProtein’:
sequin9.c:5884:41: warning: ‘gene_sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5884 |   if (fp == NULL || gene == NULL || gene->location == NULL) return;
      |                                     ~~~~^~~~~~~~~~
sequin9.c:5981:17: note: ‘gene_sfp’ was declared here
 5981 |   SeqFeatPtr    gene_sfp;
      |                 ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin10.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin10.c: In function ‘DoAutoDefLine’:
sequin10.c:198:17: warning: unused variable ‘uop’ [-Wunused-variable]
  198 |   UserObjectPtr uop;
      |                 ^~~
sequin10.c: In function ‘ApplyTableQuals’:
sequin10.c:4576:26: warning: variable ‘fqtd’ set but not used [-Wunused-but-set-variable]
 4576 |   FeatureQualTableData   fqtd;
      |                          ^~~~
sequin10.c: In function ‘OkCancelTellMeMore’:
sequin10.c:4937:10: warning: variable ‘p1’ set but not used [-Wunused-but-set-variable]
 4937 |   PrompT p1;
      |          ^~
sequin10.c: In function ‘LookupJournalTitlesInObjectTable’:
sequin10.c:5094:11: warning: unused variable ‘rval’ [-Wunused-variable]
 5094 |   Boolean rval = TRUE;
      |           ^~~~
sequin10.c: In function ‘EraseAllFieldsWhenBlank’:
sequin10.c:5874:19: warning: unused variable ‘columns’ [-Wunused-variable]
 5874 |   ValNodePtr      columns = NULL;
      |                   ^~~~~~~
sequin10.c: In function ‘ExternalSourceQualifierTableReader’:
sequin10.c:6812:22: warning: variable ‘any_valid’ set but not used [-Wunused-but-set-variable]
 6812 |   Boolean            any_valid = FALSE;
      |                      ^~~~~~~~~
sequin10.c: In function ‘LoadFeatureFieldTable’:
sequin10.c:9115:24: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9115 |   SeqEntryPtr          sep;
      |                        ^~~
sequin10.c: In function ‘OrgModListsMatch’:
sequin10.c:10856:14: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
10856 |   Boolean    found;
      |              ^~~~~
sequin10.c: In function ‘SubtypeListsMatch’:
sequin10.c:11049:14: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
11049 |   Boolean    found;
      |              ^~~~~
sequin10.c: In function ‘TrimSequencesByAlignment’:
sequin10.c:12402:25: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
12402 |   ButtoN                b;
      |                         ^
sequin10.c: In function ‘AddOneFeatureBetween’:
sequin10.c:12809:14: warning: variable ‘seqfeattype’ set but not used [-Wunused-but-set-variable]
12809 |   Int4       seqfeattype;
      |              ^~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sequin10.c:63:
sequin10.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sequin10.c:68:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sequin10.c:14399:13: warning: ‘PrintTPAHistErrors’ defined but not used [-Wunused-function]
14399 | static void PrintTPAHistErrors (LogInfoPtr lip, ValNodePtr errors)
      |             ^~~~~~~~~~~~~~~~~~
sequin10.c:12050:19: warning: ‘FindGeneInSeqEntryByLocusTag’ defined but not used [-Wunused-function]
12050 | static SeqFeatPtr FindGeneInSeqEntryByLocusTag (SeqEntryPtr sep, CharPtr locus_tag)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin10.c:9201:16: warning: ‘GetRevSectionInterval’ defined but not used [-Wunused-function]
 9201 | static Pointer GetRevSectionInterval (Uint1 data_choice, Pointer data, Pointer metadata)
      |                ^~~~~~~~~~~~~~~~~~~~~
sequin10.c:9183:16: warning: ‘GetRevSectionSequence’ defined but not used [-Wunused-function]
 9183 | static Pointer GetRevSectionSequence (Uint1 data_choice, Pointer data, Pointer metadata)
      |                ^~~~~~~~~~~~~~~~~~~~~
sequin10.c:3058:19: warning: ‘FreeTableData’ defined but not used [-Wunused-function]
 3058 | static ValNodePtr FreeTableData (ValNodePtr lines)
      |                   ^~~~~~~~~~~~~
sequin10.c:1495:19: warning: ‘OrgModTableColumnListFree’ defined but not used [-Wunused-function]
 1495 | static ValNodePtr OrgModTableColumnListFree (ValNodePtr vnp)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin10.c:45:
sequin10.c: In function ‘AutoDefBaseFormCommon’:
../include/vibdefns.h:318:18: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  318 | #define CheckBox Nlm_CheckBox
      |                  ^~~~~~~~~~~~
sequin10.c:726:24: note: ‘k’ was declared here
  726 |   GrouP p, g1, s1, s2, k, k2;
      |                        ^
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequinx.c:46:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
: Psequin
i686-linux-gnu-gcc -o sbtedit -I. -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c \
-lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb \
-lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla \
-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi  -lm
sbtedit.c:48:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
   48 | static char *date_of_compilation = __DATE__;
      |                                    ^~~~~~~~
sbtedit.c:49:36: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
   49 | static char *time_of_compilation = __TIME__;
      |                                    ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sbtedit.c:55:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sbtedit.c: In function ‘LookupTaxonomyFunc’:
sbtedit.c:604:15: warning: variable ‘rsult’ set but not used [-Wunused-but-set-variable]
  604 |   Int4        rsult;
      |               ^~~~~
At top level:
sbtedit.c:49:14: warning: ‘time_of_compilation’ defined but not used [-Wunused-variable]
   49 | static char *time_of_compilation = __TIME__;
      |              ^~~~~~~~~~~~~~~~~~~
sbtedit.c:48:14: warning: ‘date_of_compilation’ defined but not used [-Wunused-variable]
   48 | static char *date_of_compilation = __DATE__;
      |              ^~~~~~~~~~~~~~~~~~~
: sbtedit
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvmain.c:80:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvmain.c: In function ‘Nlm_Main’:
udvmain.c:232:8: warning: unused variable ‘rcL’ [-Wunused-variable]
  232 | RecT   rcL;
      |        ^~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from udvmain.c:81:
udvmain.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from udvmain.c:81:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from udvmain.c:81:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from udvmain.c:81:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -o udv -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF udvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib \
-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant \
-lncbitool -lblastcompadj -lncbiobj \
-lncbi  -lm
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvmain.c:138:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvmain.c:147:13: warning: ‘DDV_myargs’ initialized and declared ‘extern’
  147 | extern Args DDV_myargs[NUMARGS] = {
      |             ^~~~~~~~~~
ddvmain.c:267:16: warning: ‘DDV_UseNetwork’ defined but not used [-Wunused-function]
  267 | static Boolean DDV_UseNetwork(void)
      |                ^~~~~~~~~~~~~~
ddvmain.c: In function ‘Nlm_Main’:
ddvmain.c:441:5: warning: ‘UseNetwork’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  441 |  if (UseNetwork && EntrezIsInited()) EntrezBioseqFetchDisable();
      |     ^
i686-linux-gnu-gcc -o ddv -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF ddvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib \
-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool \
-lblastcompadj -lncbiobj -lncbi \
 -lm
i686-linux-gnu-gcc -g -o taxblast -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF taxblast_main.c \
	-lblastapi -lblast -lnetblast -lncbiid1 -lncbitxc2 -lncbitool -lblastcompadj \
	-lnetcli -lncbiobj -lconnssl -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from taxblast_main.c:35:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxblast_main.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: taxblast_main.c,v";
      |                   ^~~~~
i686-linux-gnu-gcc -g -o idfetch -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF idfetch.c -lncbiid1 -lnetcli -lncbiobj -lconnssl -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from idfetch.c:30:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
idfetch.c: In function ‘Nlm_Main’:
idfetch.c:358:46: warning: variable ‘any_type’ set but not used [-Wunused-but-set-variable]
  358 |       found_colon = FALSE, dna_type = FALSE, any_type = FALSE;
      |                                              ^~~~~~~~
idfetch.c:358:28: warning: variable ‘dna_type’ set but not used [-Wunused-but-set-variable]
  358 |       found_colon = FALSE, dna_type = FALSE, any_type = FALSE;
      |                            ^~~~~~~~
idfetch.c: In function ‘ProcessOneDocSum’:
idfetch.c:803:25: warning: unused variable ‘e2ry’ [-Wunused-variable]
  803 |   Entrez2ReplyPtr       e2ry;
      |                         ^~~~
idfetch.c:802:25: warning: unused variable ‘e2rq’ [-Wunused-variable]
  802 |   Entrez2RequestPtr     e2rq;
      |                         ^~~~
idfetch.c: In function ‘IdFetch_func’:
idfetch.c:852:13: warning: missing braces around initializer [-Wmissing-braces]
  852 |   SeqId  si={SEQID_GI,0,0};
      |             ^
      |                         {}
idfetch.c:859:10: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
  859 |   Uint1  group_segs;
      |          ^~~~~~~~~~
idfetch.c: In function ‘BEGetUidsFromQuery’:
idfetch.c:1113:14: warning: unused variable ‘e2rp’ [-Wunused-variable]
 1113 |   E2ReplyPtr e2rp;
      |              ^~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from idfetch.c:30:
In function ‘strncpy’,
    inlined from ‘GetIntervalAccession’ at idfetch.c:1401:5:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound 64 equals destination size [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
idfetch.c: In function ‘IdFetch_func’:
idfetch.c:961:5: warning: ‘gi_state’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  961 |     id_print_gi_state(gi_state,buf,sizeof(buf));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/string.h:519,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from idfetch.c:30:
In function ‘strncpy’,
    inlined from ‘CreateMaxPlexParam’ at idfetch.c:1313:5,
    inlined from ‘Nlm_Main’ at idfetch.c:170:8:
/usr/i686-linux-gnu/include/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
   91 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
idfetch.c: In function ‘Nlm_Main’:
idfetch.c:661:15: warning: ‘type_int’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  661 |   sip->choice = choice;
      |   ~~~~~~~~~~~~^~~~~~~~
idfetch.c:140:7: note: ‘type_int’ was declared here
  140 |   int type_int;
      |       ^~~~~~~~
i686-linux-gnu-gcc -g -o asn2gb -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asn2gb.c -lncbiid1 -lnetcli \
    -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
     -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gb.c: In function ‘HandleMultipleRecords’:
asn2gb.c:1748:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1748 |   system (cmmd);
      |   ^~~~~~~~~~~~~
asn2gb.c: In function ‘CompareFlatFiles’:
asn2gb.c:1185:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1185 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1192:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1192 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1217:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1217 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1243:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1243 |       system (cmmd);
      |       ^~~~~~~~~~~~~
asn2gb.c:1246:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1246 |       system (cmmd);
      |       ^~~~~~~~~~~~~
asn2gb.c:1251:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1251 |       system (cmmd);
      |       ^~~~~~~~~~~~~
asn2gb.c:1254:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1254 |       system (cmmd);
      |       ^~~~~~~~~~~~~
asn2gb.c: In function ‘ReportDiffs’:
asn2gb.c:1072:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1072 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1075:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1075 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1078:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1078 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1081:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1081 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1084:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1084 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1097:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1097 |     system (cmmd);
      |     ^~~~~~~~~~~~~
At top level:
asn2gb.c:1291:13: warning: ‘CheckOrder’ defined but not used [-Wunused-function]
 1291 | static void CheckOrder (
      |             ^~~~~~~~~~
asn2gb.c:968:13: warning: ‘FreeUnpubAffil’ defined but not used [-Wunused-function]
  968 | static void FreeUnpubAffil (
      |             ^~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
In function ‘sprintf’,
    inlined from ‘HandleMultipleRecords.constprop’ at asn2gb.c:1626:9:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘HandleMultipleRecords.constprop’ at asn2gb.c:1628:9:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c: In function ‘HandleMultipleRecords.constprop’:
asn2gb.c:1250:43: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
 1250 |       sprintf (cmmd, "./oldasn2gb -f p -i %s -o %s", path3, path1);
      |                                           ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 25 and 8215 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1253:43: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
 1253 |       sprintf (cmmd, "./newasn2gb -f p -i %s -o %s", path3, path2);
      |                                           ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 25 and 8215 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1242:38: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 241 [-Wformat-overflow=]
 1242 |       sprintf (cmmd, "./oldasn2gb -i %s -o %s", path3, path1);
      |                                      ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 20 and 8210 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1245:38: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 241 [-Wformat-overflow=]
 1245 |       sprintf (cmmd, "./newasn2gb -i %s -o %s", path3, path2);
      |                                      ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 20 and 8210 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1258:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 248 [-Wformat-overflow=]
 1258 |     sprintf (cmmd, "diff -b %s %s > %s", path1, path2, path3);
      |                             ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                             ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 13 and 12298 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1268:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
 1268 |       sprintf (cmmd, "cat %s", path3);
      |                           ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1216:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
 1216 |     sprintf (cmmd, "%s %s -i %s -o %s", asn2flat, arguments, path3, path2);
      |                              ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8200) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1184:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
 1184 |     sprintf (cmmd, "%s %s -i %s -o %s", asn2flat, arguments, path3, path1);
      |                              ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8200) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1191:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
 1191 |     sprintf (cmmd, "%s %s -i %s -o %s", asn2flat, arguments, path3, path2);
      |                              ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8200) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1747:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 253 [-Wformat-overflow=]
 1747 |   sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3);
      |                      ^~                 ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -o tbl2asn -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF tbl2asn.c -lncbitool -lblastcompadj \
    -lncbiobj -lnetcli -lconnssl -lncbi  -lm
tbl2asn.c:45:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
   45 | static char *date_of_compilation = __DATE__;
      |                                    ^~~~~~~~
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tbl2asn.c:47:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tbl2asn.c: In function ‘HasTaxon’:
tbl2asn.c:872:11: warning: comparison between pointer and zero character constant [-Wpointer-compare]
  872 |   if (orp == FALSE) return FALSE;
      |           ^~
tbl2asn.c:872:7: note: did you mean to dereference the pointer?
  872 |   if (orp == FALSE) return FALSE;
      |       ^
tbl2asn.c: In function ‘ProcessOneAnnot’:
tbl2asn.c:2566:15: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 2566 |   SeqEntryPtr sep;
      |               ^~~
tbl2asn.c: In function ‘WarnAboutIncompleteFileRead’:
tbl2asn.c:4297:16: warning: variable ‘str’ set but not used [-Wunused-but-set-variable]
 4297 |   CharPtr      str;
      |                ^~~
tbl2asn.c: In function ‘MakeOneRnaTitle’:
tbl2asn.c:5536:22: warning: variable ‘cds’ set but not used [-Wunused-but-set-variable]
 5536 |   SeqFeatPtr         cds;
      |                      ^~~
tbl2asn.c: In function ‘FindSingleNucleotideOrNucProtSetInBioseqInSet’:
tbl2asn.c:6986:30: warning: variable ‘single_result’ set but not used [-Wunused-but-set-variable]
 6986 |   SeqEntryPtr single = NULL, single_result;
      |                              ^~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from tbl2asn.c:66:
tbl2asn.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from tbl2asn.c:69:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
tbl2asn.c:6580:16: warning: ‘ValidateAssemblyGapFeat’ defined but not used [-Wunused-function]
 6580 | static Boolean ValidateAssemblyGapFeat (SeqFeatPtr sfp, BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
tbl2asn.c:6005:20: warning: ‘GetDescriptorTypeAlreadyInList’ defined but not used [-Wunused-function]
 6005 | static SeqDescrPtr GetDescriptorTypeAlreadyInList (
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tbl2asn.c:5901:13: warning: ‘ParseOneOrgLabel’ defined but not used [-Wunused-function]
 5901 | static void ParseOneOrgLabel (
      |             ^~~~~~~~~~~~~~~~
tbl2asn.c:2654:16: warning: ‘ExceptionExplainsMismatch’ defined but not used [-Wunused-function]
 2654 | static Boolean ExceptionExplainsMismatch (CharPtr except_text)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~
tbl2asn.c: In function ‘MakeNucProtCDS’:
tbl2asn.c:4960:28: warning: ‘%s’ directive writing up to 63 bytes into a region of size 60 [-Wformat-overflow=]
 4960 |         sprintf (lcl, "lcl|%s", id);
      |                            ^~   ~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from tbl2asn.c:47:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 68 bytes into a destination of size 64
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tbl2asn.c:4945:26: warning: ‘%s’ directive writing up to 63 bytes into a region of size 60 [-Wformat-overflow=]
 4945 |       sprintf (lcl, "lcl|%s", id);
      |                          ^~   ~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from tbl2asn.c:47:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 5 and 68 bytes into a destination of size 64
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -g -o gene2xml -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF gene2xml.c -lnetcli -lncbiobj -lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gene2xml.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gene2xml.c: In function ‘ProcessOneRecord’:
gene2xml.c:364:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  364 |         system (cmmd);
      |         ^~~~~~~~~~~~~
i686-linux-gnu-gcc -g -o entrez2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF entrez2.c -lncbiid1 -lnetcli -lncbidesk \
	-lblastapi -lblast -lncbimmdb -lncbitool -lblastcompadj \
	-lncbiobj -lvibrant -lconnssl -lncbi \
	  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from entrez2.c:49:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
entrez2.c: In function ‘Nlm_Main’:
entrez2.c:868:12: warning: variable ‘server’ set but not used [-Wunused-but-set-variable]
  868 |   CharPtr  server = "www.ncbi.nlm.nih.gov";
      |            ^~~~~~
entrez2.c:866:12: warning: variable ‘port’ set but not used [-Wunused-but-set-variable]
  866 |   Uint2    port = 2441;
      |            ^~~~
entrez2.c:865:12: warning: variable ‘path’ set but not used [-Wunused-but-set-variable]
  865 |   CharPtr  path = "/entrez/utils/entrez2server.fcgi";
      |            ^~~~
At top level:
entrez2.c:726:13: warning: ‘AboutProc’ defined but not used [-Wunused-function]
  726 | static void AboutProc (IteM i)
      |             ^~~~~~~~~
: entrez2
i686-linux-gnu-gcc -g -o gbseqget -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF gbseqget.c -lncbiid1 -lnetcli \
	-lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
	 -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gbseqget.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -g -o asn2all -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asn2all.c ncbithr.o -lncbiid1 \
    -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
     -lm -lpthread
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2all.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2all.c: In function ‘DoLockFarComponents’:
asn2all.c:68:27: warning: variable ‘stop_time’ set but not used [-Wunused-but-set-variable]
   68 |   time_t      start_time, stop_time;
      |                           ^~~~~~~~~
asn2all.c:68:15: warning: variable ‘start_time’ set but not used [-Wunused-but-set-variable]
   68 |   time_t      start_time, stop_time;
      |               ^~~~~~~~~~
i686-linux-gnu-gcc -o asn2asn -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asn2asn.c -lncbiid1 -lnetcli -lncbiobj -lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from asn2asn.c:17:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -g -o asn2fsa -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asn2fsa.c ncbithr.o -lncbiid1 \
    -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
     -lm -lpthread
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2fsa.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2fsa.c: In function ‘AddBspToList’:
asn2fsa.c:217:15: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  217 |   ValNodePtr  vnp;
      |               ^~~
asn2fsa.c: In function ‘DoLockFarComponents’:
asn2fsa.c:408:27: warning: variable ‘stop_time’ set but not used [-Wunused-but-set-variable]
  408 |   time_t      start_time, stop_time;
      |                           ^~~~~~~~~
asn2fsa.c:408:15: warning: variable ‘start_time’ set but not used [-Wunused-but-set-variable]
  408 |   time_t      start_time, stop_time;
      |               ^~~~~~~~~~
asn2fsa.c: In function ‘ProcessMultipleRecord’:
asn2fsa.c:793:32: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
  793 |           sprintf (cmmd, "zcat %s", path);
      |                                ^~   ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2fsa.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2fsa.c:786:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 250 [-Wformat-overflow=]
  786 |         sprintf (cmmd, "gzcat %s", path);
      |                               ^~   ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2fsa.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2fsa.c:782:26: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 255 [-Wformat-overflow=]
  782 |       sprintf (cmmd, "%s %s", gzcatprog, path);
      |                          ^~              ~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2fsa.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 256
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -g -o asndisc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asndisc.c ncbithr.o -lncbiid1 \
	-lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
	 -lm -lpthread
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asndisc.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asndisc.c: In function ‘ProcessMultipleRecord’:
asndisc.c:735:19: warning: variable ‘memory_usage’ set but not used [-Wunused-but-set-variable]
  735 |   Boolean         memory_usage = FALSE;
      |                   ^~~~~~~~~~~~
asndisc.c:733:19: warning: variable ‘detailed_report’ set but not used [-Wunused-but-set-variable]
  733 |   Boolean         detailed_report = FALSE;
      |                   ^~~~~~~~~~~~~~~
asndisc.c:729:19: warning: variable ‘subcit’ set but not used [-Wunused-but-set-variable]
  729 |   SeqDescrPtr     subcit = NULL;
      |                   ^~~~~~
i686-linux-gnu-gcc -o asnmacro -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asnmacro.c -lblastapi -lblast -lncbitool -lblastcompadj \
	-lncbiobj -lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asnmacro.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from asnmacro.c:54:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asnmacro.c:147:20: warning: ‘GlobalAlign2Seq’ defined but not used [-Wunused-function]
  147 | static SeqAlignPtr GlobalAlign2Seq (BioseqPtr bsp1, BioseqPtr bsp2, BoolPtr revcomp)
      |                    ^~~~~~~~~~~~~~~
In file included from asnmacro.c:57:
../include/asnmacro.h:1376:21: warning: ‘amp’ defined but not used [-Wunused-variable]
 1376 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmacro.h:1375:19: warning: ‘at’ defined but not used [-Wunused-variable]
 1375 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmacro.h:1374:23: warning: ‘avn’ defined but not used [-Wunused-variable]
 1374 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmacro.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmacro.h11";
      |               ^~~~~~~~~~~
asnmacro.c: In function ‘AsnIoFromOutputStream’:
asnmacro.c:233:14: warning: ‘aip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  233 |   AsnIoPtr   aip;
      |              ^~~
i686-linux-gnu-gcc -g -o asnval -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asnval.c ncbithr.o -lncbiid1 \
    -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
     -lm -lpthread
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asnval.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnval.c: In function ‘DoLockFarComponents’:
asnval.c:558:27: warning: variable ‘stop_time’ set but not used [-Wunused-but-set-variable]
  558 |   time_t      start_time, stop_time;
      |                           ^~~~~~~~~
asnval.c:558:15: warning: variable ‘start_time’ set but not used [-Wunused-but-set-variable]
  558 |   time_t      start_time, stop_time;
      |               ^~~~~~~~~~
i686-linux-gnu-gcc -o cleanasn -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF cleanasn.c -lblastapi -lblast -lncbiid1 \
    -lncbitool -lblastcompadj -lnetcli -lncbiobj -lconnssl -lncbi \
     -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cleanasn.c: In function ‘FindISOJTA’:
cleanasn.c:2186:17: warning: variable ‘is_issn’ set but not used [-Wunused-but-set-variable]
 2186 |   Boolean       is_issn = FALSE;
      |                 ^~~~~~~
cleanasn.c: In function ‘JournalIsPresent’:
cleanasn.c:10641:14: warning: variable ‘is_issn’ set but not used [-Wunused-but-set-variable]
10641 |   Boolean    is_issn = FALSE;
      |              ^~~~~~~
cleanasn.c: In function ‘RemoveGIProc’:
cleanasn.c:10946:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
10946 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from cleanasn.c:66:
cleanasn.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cleanasn.c: In function ‘ReportAsnDiffs’:
cleanasn.c:3907:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 3907 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c: In function ‘DoGBFFReport’:
cleanasn.c:8330:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 8330 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8333:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 8333 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8359:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 8359 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8388:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 8388 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8446:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 8446 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8449:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 8449 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c: In function ‘DoValidatorReport’:
cleanasn.c:8505:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 8505 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c:8508:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 8508 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c:8536:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 8536 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c: In function ‘CppBasicCleanup’:
cleanasn.c:11556:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
11556 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c:11560:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
11560 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c:11586:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
11586 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11588:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
11588 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11590:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
11590 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11592:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
11592 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11594:7: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
11594 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11604:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
11604 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
cleanasn.c:14106:13: warning: ‘AccessionToGi’ defined but not used [-Wunused-function]
14106 | static Int4 AccessionToGi (CharPtr string)
      |             ^~~~~~~~~~~~~
cleanasn.c:14065:16: warning: ‘PvtStrToLong’ defined but not used [-Wunused-function]
14065 | static Boolean PvtStrToLong (CharPtr str, Int4Ptr longval)
      |                ^~~~~~~~~~~~
cleanasn.c:12099:20: warning: ‘MakeVirtualProtein’ defined but not used [-Wunused-function]
12099 | static SeqEntryPtr MakeVirtualProtein (void)
      |                    ^~~~~~~~~~~~~~~~~~
cleanasn.c:10401:13: warning: ‘CheckPubmedSI’ defined but not used [-Wunused-function]
10401 | static void CheckPubmedSI (
      |             ^~~~~~~~~~~~~
cleanasn.c:10219:13: warning: ‘DoUnpublishedReport’ defined but not used [-Wunused-function]
10219 | static void DoUnpublishedReport (
      |             ^~~~~~~~~~~~~~~~~~~
cleanasn.c:9089:19: warning: ‘DuplicateStringList’ defined but not used [-Wunused-function]
 9089 | static ValNodePtr DuplicateStringList (
      |                   ^~~~~~~~~~~~~~~~~~~
cleanasn.c:6073:16: warning: ‘IsStopWord’ defined but not used [-Wunused-function]
 6073 | static Boolean IsStopWord (
      |                ^~~~~~~~~~
cleanasn.c:5235:13: warning: ‘FindOneCds’ defined but not used [-Wunused-function]
 5235 | static void FindOneCds (
      |             ^~~~~~~~~~
cleanasn.c:5214:13: warning: ‘PrintSegSeqTitleAfter’ defined but not used [-Wunused-function]
 5214 | static void PrintSegSeqTitleAfter (
      |             ^~~~~~~~~~~~~~~~~~~~~
cleanasn.c:5193:13: warning: ‘PrintSegSeqTitleBefore’ defined but not used [-Wunused-function]
 5193 | static void PrintSegSeqTitleBefore (
      |             ^~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:5178:13: warning: ‘PrintPartsTitle’ defined but not used [-Wunused-function]
 5178 | static void PrintPartsTitle (
      |             ^~~~~~~~~~~~~~~
cleanasn.c:4899:13: warning: ‘CountParts’ defined but not used [-Wunused-function]
 4899 | static void CountParts (
      |             ^~~~~~~~~~
cleanasn.c:4848:13: warning: ‘NormalizeSegSetTitle’ defined but not used [-Wunused-function]
 4848 | static void NormalizeSegSetTitle (
      |             ^~~~~~~~~~~~~~~~~~~~
cleanasn.c:1910:13: warning: ‘FindSegSeq’ defined but not used [-Wunused-function]
 1910 | static void FindSegSeq (
      |             ^~~~~~~~~~
cleanasn.c: In function ‘DoValidatorReport’:
cleanasn.c:8504:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=]
 8504 |   sprintf (cmmd, "%s -i %s -o stdout -Q 1 -r -l | sort > %s", asnval, path3, path1);
      |                         ^~                                            ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 8226) into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8507:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=]
 8507 |   sprintf (cmmd, "%s -i %s -o stdout -Q 1 -r -l | sort > %s", asnval, path4, path2);
      |                         ^~                                            ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 8226) into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8510:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 504 [-Wformat-overflow=]
 8510 |   sprintf (cmmd, "diff -h %s %s > %s", path1, path2, path5);
      |                           ^~           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 13 and 12298 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8535:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 8535 |   sprintf (cmmd, "rm %s; rm %s; rm %s; rm %s; rm %s", path1, path2, path3, path4, path5);
      |                      ^~                               ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 24 and 20499 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c: In function ‘CppBasicCleanup’:
cleanasn.c:11553:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 447 [-Wformat-overflow=]
11553 |   sprintf (cmmd, "%s -i %s | cleanasn -a e -o %s",
      |                         ^~
11554 |            "~/ncbi_cxx/compilers/xCode/build/bin/Debug/test_basic_cleanup",
11555 |            path1, path2);
      |            ~~~~~         
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 86 and 8276 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:11558:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 500 [-Wformat-overflow=]
11558 |   sprintf (cmmd, "cleanasn -i %s -o %s -K b",
      |                               ^~
11559 |            path1, path3);
      |            ~~~~~               
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 22 and 8212 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:11593:28: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 507 [-Wformat-overflow=]
11593 |       sprintf (cmmd, "diff %s %s >> ~/Desktop/diffclean.txt", path3, path2);
      |                            ^~                                 ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 34 and 8224 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:11603:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
11603 |   sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3);
      |                      ^~                 ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c: In function ‘DoGBFFReport’:
cleanasn.c:8445:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=]
 8445 |     sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep);
      |                           ^~                            ~~~~~
cleanasn.c:8445:20: note: assuming directive output of 7 bytes
 8445 |     sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep);
      |                    ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 13 or more bytes (assuming 8210) into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8448:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 8448 |     sprintf (cmmd, "rm %s; rm %s", path1, path2);
      |                        ^~          ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 9 and 8199 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8358:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 507 [-Wformat-overflow=]
 8358 |     sprintf (cmmd, "%s %s -i %s -o %s", cfp->asn2flat, arguments, path3, path2);
      |                              ^~                                   ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8200) into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8361:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 504 [-Wformat-overflow=]
 8361 |     sprintf (cmmd, "diff -h %s %s > %s", path1, path2, path3);
      |                             ^~           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 13 and 12298 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8387:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 8387 |     sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3);
      |                        ^~                 ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8329:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=]
 8329 |     sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep);
      |                           ^~                            ~~~~~
cleanasn.c:8329:20: note: assuming directive output of 7 bytes
 8329 |     sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep);
      |                    ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 13 or more bytes (assuming 8210) into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8332:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 8332 |     sprintf (cmmd, "rm %s; rm %s", path1, path2);
      |                        ^~          ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 9 and 8199 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c: In function ‘ReportAsnDiffs’:
cleanasn.c:3872:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 501 [-Wformat-overflow=]
 3872 |   sprintf (cmmd, "diff -b -h %s %s > %s", path1, path2, path3);
      |                              ^~           ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 16 and 12301 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:3906:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 3906 |   sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3);
      |                      ^~                 ~~~~~
In file included from /usr/i686-linux-gnu/include/stdio.h:866,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/i686-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 512
   38 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   39 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -g -o insdseqget -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF insdseqget.c -lncbiid1 -lnetcli \
	-lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
	 -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from insdseqget.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -g -o nps2gps -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF nps2gps.c -lncbitool -lblastcompadj \
	-lncbiobj -lconnssl -lncbi  -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from nps2gps.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
nps2gps.c: In function ‘LclMakeOneRnaTitle’:
nps2gps.c:422:22: warning: variable ‘cds’ set but not used [-Wunused-but-set-variable]
  422 |   SeqFeatPtr         cds;
      |                      ^~~
nps2gps.c: In function ‘MakeIdFromLocation’:
nps2gps.c:706:16: warning: variable ‘altid’ set but not used [-Wunused-but-set-variable]
  706 |     ValNodePtr altid;
      |                ^~~~~
nps2gps.c: In function ‘LoopThroughCDSs’:
nps2gps.c:1221:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
 1221 |   Int2               count;
      |                      ^~~~~
nps2gps.c: In function ‘NPStoGPS’:
nps2gps.c:1891:39: warning: variable ‘lastmrna’ set but not used [-Wunused-but-set-variable]
 1891 |   SeqFeatPtr         cds, gene, mrna, lastmrna, sfp, lastsfp;
      |                                       ^~~~~~~~
At top level:
nps2gps.c:589:17: warning: ‘MakeIdFromLocusTag’ defined but not used [-Wunused-function]
  589 | static SeqIdPtr MakeIdFromLocusTag (
      |                 ^~~~~~~~~~~~~~~~~~
i686-linux-gnu-gcc -o spidey -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF spideymain.c -lncbiid1 -lncbitool \
	-lblastcompadj -lnetcli -lncbiobj -lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from spideymain.c:79:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/spidey.h:103,
                 from spideymain.c:80:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
i686-linux-gnu-gcc -g -o trna2sap -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF trna2sap.c -lncbitool -lblastcompadj \
	-lncbiobj -lncbi -lm
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from trna2sap.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
trna2sap.c: In function ‘ProcessOneRecord’:
trna2sap.c:290:28: warning: unused variable ‘entityID’ [-Wunused-variable]
  290 |   Uint2          datatype, entityID = 0;
      |                            ^~~~~~~~
trna2sap.c: In function ‘Nlm_Main’:
trna2sap.c:460:12: warning: variable ‘tsp’ set but not used [-Wunused-but-set-variable]
  460 |   T2SPtr   tsp;
      |            ^~~
i686-linux-gnu-gcc -g -o trna2tbl -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF trna2tbl.c -lncbitool -lblastcompadj \
	-lncbiobj -lncbi -lm
trna2tbl.c: In function ‘RunTrnaScan’:
trna2tbl.c:142:13: warning: unused variable ‘str’ [-Wunused-variable]
  142 |   Char      str [80];
      |             ^~~
trna2tbl.c:139:13: warning: unused variable ‘speed’ [-Wunused-variable]
  139 |   CharPtr   speed;
      |             ^~~~~
trna2tbl.c:127:13: warning: unused variable ‘cmmd’ [-Wunused-variable]
  127 |   Char      cmmd [256];
      |             ^~~~
trna2tbl.c: At top level:
trna2tbl.c:232:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  232 | main (int argc, char *argv[])
      | ^~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" cn3dmain.c
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmain.c:210:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmain.c: In function ‘OpenMimeFile’:
cn3dmain.c:237:5: warning: "/*" within comment [-Wcomment]
  237 |     /* the Web browsers on other platforms get upset if you delete the file, */
      |      
cn3dmain.c: In function ‘NetConfigureProc’:
cn3dmain.c:267:13: warning: unused variable ‘netCurrentlyOn’ [-Wunused-variable]
  267 |     Boolean netCurrentlyOn = FALSE;
      |             ^~~~~~~~~~~~~~
cn3dmain.c: In function ‘Cn3D_PrintImage’:
cn3dmain.c:288:10: warning: variable ‘pmldVec’ set but not used [-Wunused-but-set-variable]
  288 |     PMLD pmldVec = NULL;
      |          ^~~~~~~
cn3dmain.c:284:11: warning: unused variable ‘pdnmlFirst’ [-Wunused-variable]
  284 |     PDNML pdnmlFirst = NULL;
      |           ^~~~~~~~~~
cn3dmain.c: In function ‘Nlm_Main’:
cn3dmain.c:334:13: warning: unused variable ‘netCurrentlyOn’ [-Wunused-variable]
  334 |     Boolean netCurrentlyOn = FALSE;
      |             ^~~~~~~~~~~~~~
At top level:
cn3dmain.c:246:25: warning: ‘seqedprocs’ defined but not used [-Wunused-variable]
  246 | static SeqEditViewProcs seqedprocs;
      |                         ^~~~~~~~~~
i686-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF  netentcf.c   -o netentcf
In file included from /usr/i686-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from netentcf.c:41:
/usr/i686-linux-gnu/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
i686-linux-gnu-gcc -o Cn3D -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF cn3dmain.o -lvibnet -lncbicn3dOGL -lncbidesk \
	-lddvlib -lncbimmdb -lncbiNacc -lnetentr \
	-lvibrantOGL -lncbiobj -lncbi  
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   debian/rules override_dh_auto_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
install -d debian/tmp/usr/lib/i386-linux-gnu
install -m 644 lib/* shlib/*.so.6.1.20170106 debian/tmp/usr/lib/i386-linux-gnu
for x in ncbiacc ncbiCacc netentr; do \
    rm -f debian/tmp/usr/lib/i386-linux-gnu/lib$x.so.6.1.20170106 && \
    ln -s libncbiNacc.so.6 \
        debian/tmp/usr/lib/i386-linux-gnu/lib$x.so.6 && \
    ln -s libncbiNacc.so debian/tmp/usr/lib/i386-linux-gnu/lib$x.so; \
done
for x in ncbicn3d vibrant; do \
    rm -f debian/tmp/usr/lib/i386-linux-gnu/lib$x.so.6.1.20170106 && \
    ln -s lib${x}OGL.so.6 \
        debian/tmp/usr/lib/i386-linux-gnu/lib$x.so.6 && \
    ln -s lib${x}OGL.so debian/tmp/usr/lib/i386-linux-gnu/lib$x.so; \
done
rm -f debian/tmp/usr/lib/i386-linux-gnu/libregexp.*
cd debian/tmp/usr/lib/i386-linux-gnu && \
for f in *.so.6.1.20170106; do \
    base=`basename $f .so.6.1.20170106` && \
    ln -s $f $base.so.6 && \
    ln -s $f $base.so; \
done
install -d debian/tmp/usr/include/ncbi
cp -LRp include/* debian/tmp/usr/include/ncbi
cd debian/tmp/usr/include/ncbi && \
            rm -f FSpCompat.h FullPath.h More*.h Optimization*.h pcre*.h
find debian/tmp/usr/include -type f | xargs chmod 644
install -d debian/tmp/usr/bin
install `find build -type f -perm /111 -print` debian/tmp/usr/bin
rm -f debian/tmp/usr/bin/*test*
rm -f debian/tmp/usr/bin/*demo*
rm -f debian/tmp/usr/bin/dosimple
rm -f debian/tmp/usr/bin/ncbisort
rm -f debian/tmp/usr/bin/cdscan
rm -f debian/tmp/usr/bin/entrcmd
mv debian/tmp/usr/bin/Cn3D debian/tmp/usr/bin/Cn3D-3.0
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a
   debian/rules override_dh_installdocs-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs
install -m 644 config/README \
    debian/libncbi6/usr/share/doc/libncbi6/README.config
install -m 644 network/nsclilib/readme \
    debian/libncbi6/usr/share/doc/libncbi6/README.net-cfg
install -m 644 doc/fa2htgs/README \
    debian/ncbi-tools-bin/usr/share/doc/ncbi-tools-bin/README.fa2htgs
install -m 644 sequin/README \
    debian/ncbi-tools-x11/usr/share/doc/ncbi-tools-x11/README.sequin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs -k README
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installexamples -a
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link # otherwise runs too late to influence debian/installman
chmod +x debian/installman
debian/installman ncbi-cn3d
debian/installman ncbi-tools-bin
debian/installman ncbi-tools-x11
dh_installman
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_installmenu-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
chmod +x debian/makemenu
debian/makemenu debian/ncbi-cn3d.install
debian/makemenu debian/ncbi-tools-x11.install
dh_installmenu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installmime -a
   dh_lintian -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
dwz: debian/libncbi6/usr/lib/i386-linux-gnu/libncbiobj.so.6.1.20170106: DWARF compression not beneficial - old size 3708786 new size 3714254
   dh_strip -a
   debian/rules override_dh_makeshlibs-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_makeshlibs -V
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_shlibdeps -a
   dh_installdeb -a
   debian/rules override_dh_gencontrol-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_gencontrol  -pncbi-cn3d -- -v3.0.20170106+dfsg1-9
dh_gencontrol  -Nncbi-cn3d
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_md5sums -a
   debian/rules override_dh_builddeb
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_builddeb -pncbi-rrna-data -- -Zxz -z7 -Sextreme
dh_builddeb: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_builddeb -Nncbi-rrna-data
dpkg-deb: building package 'libncbi6' in '../libncbi6_6.1.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'libncbi6-dbgsym' in '../libncbi6-dbgsym_6.1.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'libncbi6-dev' in '../libncbi6-dev_6.1.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'ncbi-tools-bin' in '../ncbi-tools-bin_6.1.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'ncbi-tools-bin-dbgsym' in '../ncbi-tools-bin-dbgsym_6.1.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'ncbi-tools-x11' in '../ncbi-tools-x11_6.1.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'ncbi-tools-x11-dbgsym' in '../ncbi-tools-x11-dbgsym_6.1.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'ncbi-cn3d' in '../ncbi-cn3d_3.0.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'ncbi-cn3d-dbgsym' in '../ncbi-cn3d-dbgsym_3.0.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'libvibrant6b' in '../libvibrant6b_6.1.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'libvibrant6b-dbgsym' in '../libvibrant6b-dbgsym_6.1.20170106+dfsg1-9_i386.deb'.
dpkg-deb: building package 'libvibrant6-dev' in '../libvibrant6-dev_6.1.20170106+dfsg1-9_i386.deb'.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../ncbi-tools6_6.1.20170106+dfsg1-9_i386.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-source: info: using options from ncbi-tools6-6.1.20170106+dfsg1/debian/source/options: --single-debian-patch
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-26T07:04:58Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


ncbi-tools6_6.1.20170106+dfsg1-9_i386.changes:
----------------------------------------------

Format: 1.8
Date: Mon, 12 Oct 2020 22:08:56 -0400
Source: ncbi-tools6
Binary: libncbi6 libncbi6-dbgsym libncbi6-dev libvibrant6-dev libvibrant6b libvibrant6b-dbgsym ncbi-cn3d ncbi-cn3d-dbgsym ncbi-tools-bin ncbi-tools-bin-dbgsym ncbi-tools-x11 ncbi-tools-x11-dbgsym
Built-For-Profiles: cross nocheck
Architecture: i386
Version: 6.1.20170106+dfsg1-9
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Aaron M. Ucko <ucko@debian.org>
Description:
 libncbi6   - NCBI libraries for biology applications
 libncbi6-dev - NCBI libraries for biology applications (development files)
 libvibrant6-dev - NCBI libraries for graphic biology applications (development file
 libvibrant6b - NCBI libraries for graphic biology applications
 ncbi-cn3d  - 3-dimensional viewer for biological molecules
 ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities)
 ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities)
Changes:
 ncbi-tools6 (6.1.20170106+dfsg1-9) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * debian/upstream/metadata: Fix typo.
 .
   [ Aaron M. Ucko ]
   * Trim trailing whitespace.
   * debian/copyright:
     - Use spaces rather than tabs to start continuation lines.
     - Clean up spurious trailing content on Files: lines.  (Several somehow
       wound up with trailing colons, and one had a parenthesized comment,
       which the spec doesn't allow.)
     - Correct the spelling of "downloaded."
   * Use secure URIs in Homepage field and debian/watch.
   * Bump debhelper from old 11 to 12.
   * Set debhelper-compat version in Build-Depends.
   * Move development files usable with libvibgif.so.6 to libncbi6-dev from
     libvibrant6-dev; set Breaks/Replaces accordingly.  (The runtime library
     has long been in libncbi6, since it adds no extra dependencies.)
   * debian/*.symbols: Use Build-Depends-Package, missed earlier.
   * debian/ncbi-cn3d.{postinst,prerm}: Supply -e via set, per best practice.
   * Update Lintian overrides: drop overrides associated with former .menu
     files, and go ahead and override custom-compression-in-debian-rules for
     the ncbi-rrna-data binary package, which is architecture-independent
     and benefits from tuning.
   * debian/rules: Use pkg-info.mk rather than raw dpkg-parsechangelog.
Checksums-Sha1:
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+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

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 libx11-data (= 2:1.7.2-2),
 libx11-dev (= 2:1.7.2-2+b1),
 libx11-xcb1 (= 2:1.7.2-2+b1),
 libxau-dev (= 1:1.0.9-1),
 libxau6 (= 1:1.0.9-1),
 libxcb-dri2-0 (= 1.14-3),
 libxcb-dri3-0 (= 1.14-3),
 libxcb-glx0 (= 1.14-3),
 libxcb-present0 (= 1.14-3),
 libxcb-shm0 (= 1.14-3),
 libxcb-sync1 (= 1.14-3),
 libxcb-xfixes0 (= 1.14-3),
 libxcb1 (= 1.14-3),
 libxcb1-dev (= 1.14-3),
 libxdmcp-dev (= 1:1.1.2-3),
 libxdmcp6 (= 1:1.1.2-3),
 libxext-dev (= 2:1.3.4-1),
 libxext6 (= 2:1.3.4-1),
 libxfixes3 (= 1:5.0.3-2),
 libxft-dev (= 2.3.2-2),
 libxft2 (= 2.3.2-2),
 libxm4 (= 2.3.8-3),
 libxml2 (= 2.9.12+dfsg-5),
 libxmu-dev (= 2:1.1.2-2+b3),
 libxmu-headers (= 2:1.1.2-2),
 libxmu6 (= 2:1.1.2-2+b3),
 libxrender-dev (= 1:0.9.10-1),
 libxrender1 (= 1:0.9.10-1),
 libxshmfence1 (= 1.3-1),
 libxt-dev (= 1:1.2.0-1),
 libxt6 (= 1:1.2.0-1),
 libxxf86vm1 (= 1:1.1.4-1+b2),
 libz3-4 (= 4.8.12-1+b1),
 libzstd1 (= 1.4.8+dfsg-2.1),
 linux-libc-dev (= 5.14.6-2),
 login (= 1:4.8.1-1),
 lsb-base (= 11.1.0),
 m4 (= 1.4.18-5),
 make (= 4.3-4.1),
 man-db (= 2.9.4-2),
 mawk (= 1.3.4.20200120-2),
 ncurses-base (= 6.2+20210905-1),
 ncurses-bin (= 6.2+20210905-1),
 nettle-dev (= 3.7.3-1),
 patch (= 2.7.6-7),
 perl (= 5.32.1-6),
 perl-base (= 5.32.1-6),
 perl-modules-5.32 (= 5.32.1-6),
 pkg-config (= 0.29.2-1),
 po-debconf (= 1.0.21+nmu1),
 rpcsvc-proto (= 1.4.2-4),
 sed (= 4.8-1),
 sensible-utils (= 0.0.17),
 sysvinit-utils (= 3.00-1),
 tar (= 1.34+dfsg-1),
 ucf (= 3.0043),
 uil (= 2.3.8-3),
 util-linux (= 2.37.2-3),
 uuid-dev (= 2.37.2-3),
 x11-common (= 1:7.7+23),
 x11proto-dev (= 2021.5-1),
 xorg-sgml-doctools (= 1:1.11-1.1),
 xtrans-dev (= 1.4.0-1),
 xz-utils (= 5.2.5-2),
 zlib1g (= 1:1.2.11.dfsg-2),
 zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1602554936"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libncbi6-dbgsym_6.1.20170106+dfsg1-9_i386.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 8664092 bytes: control archive=1356 bytes.
    1035 bytes,    13 lines      control              
    1779 bytes,    17 lines      md5sums              
 Package: libncbi6-dbgsym
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Auto-Built-Package: debug-symbols
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 9117
 Depends: libncbi6 (= 6.1.20170106+dfsg1-9)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libncbi6
 Build-Ids: 0d6c4552200c3bfa3b13e696d8856c7c103dc710 1bc8395d6303758b38e36d6b4b3b6d88ce61ffd0 23d08a3d5b5528fb7ae65e83ac51fe64f6c18590 24cf315df9f4014db15a3f87880e10e7f96072c4 36d3d8c14d3eca3bc38a113fbbbe1c03d033bc17 581ce9d7985cdb694419abf117f16cfde4ccafab 701451713d95f5ff90eb630577fd8ae78a22fdf7 89ec310dd0ee5a56e235ac1f6d2a74ef376931e3 8b0b851458e2ebc14e4e654670cf310c3452fe6c 8c95824c7af766d0f55db088d92cc9fe37042900 95c8d29b0958e8e79e4b2a6cb00ac836af487c26 a807f687b385074437cea785555aa6ff93e94816 cadd28bbc1f5a31cd349c5593c4c5d83a3355790 cb59e7bb58459f5d94e5624637a07496677fd75b d439b88f3ac420c2cc057727e94a7c8be443acc6 db143e6473f35d7f221479c13964fa6c6dfdecae

drwxr-xr-x root/root         0 2020-10-13 02:08 ./
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drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.dwz/i386-linux-gnu/
-rw-r--r-- root/root     81084 2020-10-13 02:08 ./usr/lib/debug/.dwz/i386-linux-gnu/libncbi6.debug
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/libncbi6-dbgsym -> libncbi6


libncbi6-dev_6.1.20170106+dfsg1-9_i386.deb
------------------------------------------

 new Debian package, version 2.0.
 size 5799296 bytes: control archive=13140 bytes.
     689 bytes,    18 lines      control              
   35566 bytes,   529 lines      md5sums              
 Package: libncbi6-dev
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 22860
 Depends: libncbi6 (= 6.1.20170106+dfsg1-9)
 Recommends: ncbi-tools-bin
 Breaks: libvibrant6-dev (<< 6.1.20170106-9~)
 Replaces: libvibrant6-dev (<< 6.1.20170106-9~)
 Provides: ncbi-tools-dev
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for biology applications (development files)
  This package supplies development versions of NCBI's non-graphical C
  libraries, along with the corresponding header files.

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-rw-r--r-- root/root    131730 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetblast.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetblast.so -> libnetblast.so.6.1.20170106
-rw-r--r-- root/root     26124 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetcli.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetcli.so -> libnetcli.so.6.1.20170106
-rw-r--r-- root/root    182384 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetentr.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetentr.so -> libncbiNacc.so
-rw-r--r-- root/root    177452 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibgif.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibgif.so -> libvibgif.so.6.1.20170106
-rw-r--r-- root/root     73340 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/ncbithr.o
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/libncbi6-dev/
-rw-r--r-- root/root       507 2019-09-08 01:32 ./usr/share/doc/libncbi6-dev/NEWS.Debian.gz
-rw-r--r-- root/root       178 2019-08-04 03:05 ./usr/share/doc/libncbi6-dev/README.Debian
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/libncbi6-dev/README.gz -> changelog.gz
-rw-r--r-- root/root      1313 2019-07-29 01:01 ./usr/share/doc/libncbi6-dev/README.sdk
-rw-r--r-- root/root      2512 2019-07-29 01:01 ./usr/share/doc/libncbi6-dev/access.txt.gz
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-rw-r--r-- root/root     18643 2020-10-13 02:08 ./usr/share/doc/libncbi6-dev/changelog.Debian.gz
-rw-r--r-- root/root     18160 2019-07-29 01:01 ./usr/share/doc/libncbi6-dev/changelog.gz
-rw-r--r-- root/root     10311 2020-10-12 23:46 ./usr/share/doc/libncbi6-dev/copyright
-rw-r--r-- root/root    367300 2019-07-29 01:01 ./usr/share/doc/libncbi6-dev/sdk.doc.gz


libncbi6_6.1.20170106+dfsg1-9_i386.deb
--------------------------------------

 new Debian package, version 2.0.
 size 4202492 bytes: control archive=65220 bytes.
     662 bytes,    15 lines      control              
    2562 bytes,    33 lines      md5sums              
     740 bytes,    16 lines      shlibs               
  443477 bytes, 11665 lines      symbols              
      67 bytes,     2 lines      triggers             
 Package: libncbi6
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 13267
 Depends: ncbi-data (= 6.1.20170106+dfsg1-9), libc6 (>= 2.29), libgnutls30 (>= 3.7.2)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for biology applications
  The NCBI Software Development Toolkit was developed for the production and
  distribution of GenBank, Entrez, BLAST, and related services by NCBI.  It
  allows you to read and write NCBI ASN.1 files, builds Blast or Entrez, etc.

drwxr-xr-x root/root         0 2020-10-13 02:08 ./
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drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libblast.so.6 -> libblast.so.6.1.20170106
-rw-r--r-- root/root    738440 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libblast.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libblastapi.so.6 -> libblastapi.so.6.1.20170106
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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libblastcompadj.so.6 -> libblastcompadj.so.6.1.20170106
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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libconnssl.so.6 -> libconnssl.so.6.1.20170106
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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbi.so.6 -> libncbi.so.6.1.20170106
-rw-r--r-- root/root    949980 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbi.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbiCacc.so.6 -> libncbiNacc.so.6
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbiNacc.so.6 -> libncbiNacc.so.6.1.20170106
-rw-r--r-- root/root    188656 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbiNacc.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbiacc.so.6 -> libncbiNacc.so.6
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbicdr.so.6 -> libncbicdr.so.6.1.20170106
-rw-r--r-- root/root    142632 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbicdr.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbiid1.so.6 -> libncbiid1.so.6.1.20170106
-rw-r--r-- root/root     45488 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbiid1.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbimla.so.6 -> libncbimla.so.6.1.20170106
-rw-r--r-- root/root     66448 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbimla.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbimmdb.so.6 -> libncbimmdb.so.6.1.20170106
-rw-r--r-- root/root    741544 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbimmdb.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbiobj.so.6 -> libncbiobj.so.6.1.20170106
-rw-r--r-- root/root   7637480 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbiobj.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbitool.so.6 -> libncbitool.so.6.1.20170106
-rw-r--r-- root/root   1757032 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbitool.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbitxc2.so.6 -> libncbitxc2.so.6.1.20170106
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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetblast.so.6 -> libnetblast.so.6.1.20170106
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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetcli.so.6 -> libnetcli.so.6.1.20170106
-rw-r--r-- root/root     22400 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetcli.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libnetentr.so.6 -> libncbiNacc.so.6
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibgif.so.6 -> libvibgif.so.6.1.20170106
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drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc-base/
-rw-r--r-- root/root       580 2019-08-04 03:05 ./usr/share/doc-base/libncbi6.ncbi-tools-dispatcher
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/libncbi6/
-rw-r--r-- root/root      4354 2019-07-29 01:01 ./usr/share/doc/libncbi6/FAQ.txt.gz
-rw-r--r-- root/root       507 2019-09-08 01:32 ./usr/share/doc/libncbi6/NEWS.Debian.gz
-rw-r--r-- root/root      5135 2020-10-13 02:08 ./usr/share/doc/libncbi6/README.config.gz
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/libncbi6/README.gz -> changelog.gz
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-rw-r--r-- root/root       392 2020-10-13 02:08 ./usr/share/doc/libncbi6/README.net-cfg
-rw-r--r-- root/root        94 2019-08-04 03:05 ./usr/share/doc/libncbi6/TODO.Debian
-rw-r--r-- root/root      1140 2019-08-26 00:16 ./usr/share/doc/libncbi6/bkgd.gif
-rw-r--r-- root/root     18643 2020-10-13 02:08 ./usr/share/doc/libncbi6/changelog.Debian.gz
-rw-r--r-- root/root     18160 2019-07-29 01:01 ./usr/share/doc/libncbi6/changelog.gz
-rw-r--r-- root/root     10311 2020-10-12 23:46 ./usr/share/doc/libncbi6/copyright
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-rw-r--r-- root/root       895 2019-08-26 00:16 ./usr/share/doc/libncbi6/left.gif
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-rw-r--r-- root/root        50 2019-08-26 00:16 ./usr/share/doc/libncbi6/spacer10.gif


libvibrant6-dev_6.1.20170106+dfsg1-9_i386.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 1701784 bytes: control archive=3556 bytes.
     632 bytes,    14 lines      control              
    6679 bytes,   107 lines      md5sums              
     337 bytes,    13 lines   *  postinst             #!/bin/sh
 Package: libvibrant6-dev
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 7201
 Depends: libglu1-mesa-dev | libglu-dev, libmotif-dev, libncbi6-dev (= 6.1.20170106+dfsg1-9), libvibrant6b (= 6.1.20170106+dfsg1-9), libxmu-dev
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for graphic biology applications (development files)
  Vibrant allows you to develop portable (Motif, MS-Windows, Mac-OS) graphic
  biological applications.

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drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/
-rw-r--r-- root/root    150376 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libddvlib.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libddvlib.so -> libddvlib.so.6.1.20170106
-rw-r--r-- root/root    266750 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbicn3d.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbicn3d.so -> libncbicn3dOGL.so
-rw-r--r-- root/root    275000 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbicn3dOGL.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbicn3dOGL.so -> libncbicn3dOGL.so.6.1.20170106
-rw-r--r-- root/root   3688848 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbidesk.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbidesk.so -> libncbidesk.so.6.1.20170106
-rw-r--r-- root/root    163038 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibnet.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibnet.so -> libvibnet.so.6.1.20170106
-rw-r--r-- root/root   1017720 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibrant.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibrant.so -> libvibrantOGL.so
-rw-r--r-- root/root   1080346 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibrantOGL.a
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibrantOGL.so -> libvibrantOGL.so.6.1.20170106
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/libvibrant6-dev/
-rw-r--r-- root/root       507 2019-09-08 01:32 ./usr/share/doc/libvibrant6-dev/NEWS.Debian.gz
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/libvibrant6-dev/README.gz -> changelog.gz
-rw-r--r-- root/root     18643 2020-10-13 02:08 ./usr/share/doc/libvibrant6-dev/changelog.Debian.gz
-rw-r--r-- root/root     18160 2019-07-29 01:01 ./usr/share/doc/libvibrant6-dev/changelog.gz
-rw-r--r-- root/root     10311 2020-10-12 23:46 ./usr/share/doc/libvibrant6-dev/copyright


libvibrant6b-dbgsym_6.1.20170106+dfsg1-9_i386.deb
-------------------------------------------------

 new Debian package, version 2.0.
 size 3161260 bytes: control archive=832 bytes.
     596 bytes,    13 lines      control              
     617 bytes,     6 lines      md5sums              
 Package: libvibrant6b-dbgsym
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Auto-Built-Package: debug-symbols
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3393
 Depends: libvibrant6b (= 6.1.20170106+dfsg1-9)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libvibrant6b
 Build-Ids: 200729091341a51272060973fc5d1b826dd1311b 59ae0f72fe1b6fd1a5e162e72c35823f273598b3 602911391d397977c53d4c7520bbf28b9233ebd8 85e990764e48cc527748f9b621d2af1f4c172173 ff65f39e2bafeb2b8ef3c41d40c4cea10c976e21

drwxr-xr-x root/root         0 2020-10-13 02:08 ./
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.build-id/20/
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drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.build-id/59/
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drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.build-id/60/
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drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.build-id/85/
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drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.build-id/ff/
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drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.dwz/i386-linux-gnu/
-rw-r--r-- root/root     44472 2020-10-13 02:08 ./usr/lib/debug/.dwz/i386-linux-gnu/libvibrant6b.debug
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/libvibrant6b-dbgsym -> libvibrant6b


libvibrant6b_6.1.20170106+dfsg1-9_i386.deb
------------------------------------------

 new Debian package, version 2.0.
 size 1426372 bytes: control archive=16012 bytes.
     847 bytes,    18 lines      control              
     803 bytes,    10 lines      md5sums              
     256 bytes,     5 lines      shlibs               
   91916 bytes,  2474 lines      symbols              
      67 bytes,     2 lines      triggers             
 Package: libvibrant6b
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 4007
 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libc6 (>= 2.29), libgl1, libglu1-mesa | libglu1, libpng16-16 (>= 1.6.2-1), libx11-6, libxm4 (>= 2.3.4), libxmu6, libxt6
 Recommends: sensible-utils
 Conflicts: libvibrant6, libvibrant6a
 Replaces: libvibrant6, libvibrant6a
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for graphic biology applications
  This is the library for those who just want to run Vibrant applications.
  It also includes a wrapper (vibrate) that allows many NCBI applications to
  provide a GUI for selecting options.

drwxr-xr-x root/root         0 2020-10-13 02:08 ./
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libddvlib.so.6 -> libddvlib.so.6.1.20170106
-rw-r--r-- root/root    128676 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libddvlib.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbicn3d.so.6 -> libncbicn3dOGL.so.6
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbicn3dOGL.so.6 -> libncbicn3dOGL.so.6.1.20170106
-rw-r--r-- root/root    195156 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbicn3dOGL.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbidesk.so.6 -> libncbidesk.so.6.1.20170106
-rw-r--r-- root/root   2691004 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libncbidesk.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibnet.so.6 -> libvibnet.so.6.1.20170106
-rw-r--r-- root/root    138100 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibnet.so.6.1.20170106
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibrant.so.6 -> libvibrantOGL.so.6
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibrantOGL.so.6 -> libvibrantOGL.so.6.1.20170106
-rw-r--r-- root/root    784884 2020-10-13 02:08 ./usr/lib/i386-linux-gnu/libvibrantOGL.so.6.1.20170106
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/libvibrant6b/
-rw-r--r-- root/root       507 2019-09-08 01:32 ./usr/share/doc/libvibrant6b/NEWS.Debian.gz
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/libvibrant6b/README.gz -> changelog.gz
-rw-r--r-- root/root     18643 2020-10-13 02:08 ./usr/share/doc/libvibrant6b/changelog.Debian.gz
-rw-r--r-- root/root     18160 2019-07-29 01:01 ./usr/share/doc/libvibrant6b/changelog.gz
-rw-r--r-- root/root     10311 2020-10-12 23:46 ./usr/share/doc/libvibrant6b/copyright
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/lintian/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/lintian/overrides/
-rw-r--r-- root/root        48 2019-08-04 03:05 ./usr/share/lintian/overrides/libvibrant6b


ncbi-cn3d-dbgsym_3.0.20170106+dfsg1-9_i386.deb
----------------------------------------------

 new Debian package, version 2.0.
 size 14072 bytes: control archive=556 bytes.
     427 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: ncbi-cn3d-dbgsym
 Source: ncbi-tools6 (6.1.20170106+dfsg1-9)
 Version: 3.0.20170106+dfsg1-9
 Auto-Built-Package: debug-symbols
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 26
 Depends: ncbi-cn3d (= 3.0.20170106+dfsg1-9)
 Section: debug
 Priority: optional
 Description: debug symbols for ncbi-cn3d
 Build-Ids: 72e74d539352fef8ce535f754f455b84912da70e

drwxr-xr-x root/root         0 2020-10-13 02:08 ./
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/debug/.build-id/72/
-rw-r--r-- root/root     16332 2020-10-13 02:08 ./usr/lib/debug/.build-id/72/e74d539352fef8ce535f754f455b84912da70e.debug
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-cn3d-dbgsym -> ncbi-cn3d


ncbi-cn3d_3.0.20170106+dfsg1-9_i386.deb
---------------------------------------

 new Debian package, version 2.0.
 size 47880 bytes: control archive=1096 bytes.
     836 bytes,    17 lines      control              
     548 bytes,     8 lines      md5sums              
     198 bytes,     9 lines   *  postinst             #!/bin/sh
      72 bytes,     6 lines   *  prerm                #!/bin/sh
 Package: ncbi-cn3d
 Source: ncbi-tools6 (6.1.20170106+dfsg1-9)
 Version: 3.0.20170106+dfsg1-9
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 82
 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libvibrant6b (<< 6.1.20170106+dfsg1.1), libvibrant6b (>= 6.1.20170106+dfsg1), libc6 (>= 2.4)
 Suggests: ncbi-tools-bin, ncbi-tools-x11
 Breaks: ncbi-tools-x11 (<< 6.1.20170106+dfsg1-5~)
 Replaces: ncbi-tools-x11 (<< 6.1.20170106+dfsg1-5~)
 Section: science
 Priority: optional
 Multi-Arch: foreign
 Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: 3-dimensional viewer for biological molecules
  Cn3D is a helper application for your web browser that allows you to
  view 3-dimensional structures from NCBI's Entrez retrieval service.

drwxr-xr-x root/root         0 2020-10-13 02:08 ./
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/bin/
-rwxr-xr-x root/root     13660 2020-10-13 02:08 ./usr/bin/Cn3D-3.0
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/mime/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/lib/mime/packages/
-rw-r--r-- root/root       158 2019-09-08 01:33 ./usr/lib/mime/packages/ncbi-cn3d
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/applications/
-rw-r--r-- root/root       204 2020-10-13 02:08 ./usr/share/applications/Cn3D-3.0.desktop
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-cn3d/
-rw-r--r-- root/root       507 2019-09-08 01:32 ./usr/share/doc/ncbi-cn3d/NEWS.Debian.gz
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-cn3d/README.gz -> changelog.gz
-rw-r--r-- root/root     18643 2020-10-13 02:08 ./usr/share/doc/ncbi-cn3d/changelog.Debian.gz
-rw-r--r-- root/root     18160 2019-07-29 01:01 ./usr/share/doc/ncbi-cn3d/changelog.gz
-rw-r--r-- root/root     10311 2020-10-12 23:46 ./usr/share/doc/ncbi-cn3d/copyright
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/man/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/man/man1/
-rw-r--r-- root/root       522 2020-10-13 02:08 ./usr/share/man/man1/Cn3D-3.0.1.gz


ncbi-tools-bin-dbgsym_6.1.20170106+dfsg1-9_i386.deb
---------------------------------------------------

 new Debian package, version 2.0.
 size 923680 bytes: control archive=2240 bytes.
    1856 bytes,    12 lines      control              
    3905 bytes,    37 lines      md5sums              
 Package: ncbi-tools-bin-dbgsym
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Auto-Built-Package: debug-symbols
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1195
 Depends: ncbi-tools-bin (= 6.1.20170106+dfsg1-9)
 Section: debug
 Priority: optional
 Description: debug symbols for ncbi-tools-bin
 Build-Ids: 009a383776c40c97a984f0fa95e22c35c3d4e4e9 15de7775320a70c1a6bc39ec109ef7de310096be 16b8a2fba27fa6bb8fdbde4fdb2034a49fca575e 17fe8a2dc40c1f3752c3b8c3eb204464a1694b70 1e1c265eddf7f6a148ffe285a6cfa375bb9aac10 1e36a56416cf48ce3d342472d4b46a9ffef1e6bd 208442ac6691eeeb8b18b75ce464eb70ca77d4e1 22a283f4f907486f40fb60ae28bd8b9304ae6257 2614e78ff1ae5c93ebca6eb4b209ef36ed002ed1 276cbd9b7e190e191bd54bf8f0fc45cd4352c00e 2a84cffea955f1426b853d8a402434bbdc84c65f 2adfd0fd19ace84dc7163ef6dd8c22de985672ed 2ca8e5bfab2e95e06a581639e59e9d9ddd0fe663 368e9c321bfa2126e4a32635019ae2421ed2f1f6 3ad958dc6df6b6978001e2cc050c12465ddfae19 4298483283e44fbedaf1468ad6af1f2d0513d64e 474499a045133b0f4e4b33146f0e246bf5ac5fb5 4a86b955f87a8579ab037419d4cf4a258cb86f7c 52a910cc234dff0ad87636ff67d6ed0d8d274ab8 56b1ac2df83ce20033d806cfadefbfc426ceb07b 64dcd85be7ec429e00f8ea3995bfc896899a50fd 713fe2de14b69f4b21e9d05c4792229b1d7fe978 7720d677ff026a45e62a31e1fdbf54d1dc6a9bd8 78000a9c038fedca9a6e5da6d89cebdeb72377ba 8098a503f7f7af66f409cd6ba4b2248f24d7139d 874c6003de18d3b04d8bde83469e737852155807 97ccbedf0c15a349e5732b6e5e9e09e7e5bd1cb7 a4ed09ea163f35c9c89836a64173a594ee398657 aade83dc46992f171f47faaaa50c0ebfe338f670 ba311d22d8d36268b4e131c81c6dc86208f526b9 bdfe7197e0e645b131f1fc16fb36127f7661e733 c36035f2b516323a6da50a9fd4a6d52447fa2315 dc5a902e0f1f5f1cc3bf368e2997e90b9944e8fa e5f2422d302531814623a9fbc7536dfdeb2af701 e7d34fcc4f30ba60899b850943ac3fa98e10b457 fd671d8001e35c1af99336abba41258f4f9634d1

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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-bin-dbgsym -> ncbi-tools-bin


ncbi-tools-bin_6.1.20170106+dfsg1-9_i386.deb
--------------------------------------------

 new Debian package, version 2.0.
 size 1937936 bytes: control archive=3388 bytes.
    1021 bytes,    21 lines      control              
    6559 bytes,   100 lines      md5sums              
 Package: ncbi-tools-bin
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3364
 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libc6 (>= 2.29)
 Suggests: libvibrant6b, ncbi-blast+, ncbi-cn3d, ncbi-tools-x11
 Breaks: blast2 (<< 1:2.2.26.20160908)
 Replaces: blast2 (<< 1:2.2.26.20160908)
 Section: science
 Priority: optional
 Multi-Arch: foreign
 Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for biology applications (text-based utilities)
  This package includes various utilities distributed with the NCBI C SDK,
  including the development tools asntool and errhdr (formerly of
  libncbi6-dev).  None of the programs in this package require X; you can
  find the X-based utilities in the ncbi-tools-x11 package.  BLAST and
  related tools now come from a separate source base, corresponding to the
  ncbi-blast+ and ncbi-blast+-legacy packages.

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-rwxr-xr-x root/root    318416 2020-10-13 02:08 ./usr/bin/makeset
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-rwxr-xr-x root/root     13928 2020-10-13 02:08 ./usr/bin/sortbyquote
-rwxr-xr-x root/root     23020 2020-10-13 02:08 ./usr/bin/spidey
-rwxr-xr-x root/root     13928 2020-10-13 02:08 ./usr/bin/subfuse
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-rwxr-xr-x root/root    146716 2020-10-13 02:08 ./usr/bin/tbl2asn
-rwxr-xr-x root/root     18424 2020-10-13 02:08 ./usr/bin/trna2sap
-rwxr-xr-x root/root     13796 2020-10-13 02:08 ./usr/bin/trna2tbl
-rwxr-xr-x root/root     13964 2020-10-13 02:08 ./usr/bin/vecscreen
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-bin/
-rw-r--r-- root/root       507 2019-09-08 01:32 ./usr/share/doc/ncbi-tools-bin/NEWS.Debian.gz
-rw-r--r-- root/root      2740 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-bin/README.asn2xml
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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-bin/README.gz -> changelog.gz
-rw-r--r-- root/root       179 2019-08-26 00:16 ./usr/share/doc/ncbi-tools-bin/README.test
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-rw-r--r-- root/root     10311 2020-10-12 23:46 ./usr/share/doc/ncbi-tools-bin/copyright
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-bin/examples/
-rwxr-xr-x root/root     14602 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-bin/examples/gbf2tbl.pl
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-rw-r--r-- root/root      1870 2019-08-26 01:13 ./usr/share/doc/ncbi-tools-bin/run-unit-test.gz
-rw-r--r-- root/root      6454 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-bin/tbl2asn.txt.gz
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-bin/test-data/
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-rw-r--r-- root/root       187 2019-08-26 00:16 ./usr/share/doc/ncbi-tools-bin/test-data/Sc_16.tbl
-rw-r--r-- root/root    625726 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-bin/test-data/dsRNA_viruses.ags.gz
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-rw-r--r-- root/root      2373 2019-08-26 00:16 ./usr/share/doc/ncbi-tools-bin/test-data/idfetch_g1234.npset.gz
-rw-r--r-- root/root    411571 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-bin/test-data/nc0225.aso.gz
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-rw-r--r-- root/root      3050 2019-08-26 00:16 ./usr/share/doc/ncbi-tools-bin/test-data/trnascan-se_sample.output
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-rw-r--r-- root/root       509 2020-10-13 02:08 ./usr/share/man/man1/getpub.1.gz
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-rw-r--r-- root/root      1026 2020-10-13 02:08 ./usr/share/man/man1/vecscreen.1.gz


ncbi-tools-x11-dbgsym_6.1.20170106+dfsg1-9_i386.deb
---------------------------------------------------

 new Debian package, version 2.0.
 size 2337052 bytes: control archive=816 bytes.
     585 bytes,    12 lines      control              
     619 bytes,     6 lines      md5sums              
 Package: ncbi-tools-x11-dbgsym
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Auto-Built-Package: debug-symbols
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2517
 Depends: ncbi-tools-x11 (= 6.1.20170106+dfsg1-9)
 Section: debug
 Priority: optional
 Description: debug symbols for ncbi-tools-x11
 Build-Ids: 12574c21cf3a6dc8042c5af5ed0a6f3366e7975d 1fe0e1c9729a66ba224de410a77cf40d8c77aec3 312a99d8cfbf74a77e7c2687cc0f37561a46373e 86f3cf6492db034048bae5a5ea8176fafd564936 e0e62fa8a0f6681e30685ebd79224480fd824f82

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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-x11-dbgsym -> ncbi-tools-x11


ncbi-tools-x11_6.1.20170106+dfsg1-9_i386.deb
--------------------------------------------

 new Debian package, version 2.0.
 size 1255952 bytes: control archive=2200 bytes.
     815 bytes,    17 lines      control              
    4130 bytes,    55 lines      md5sums              
 Package: ncbi-tools-x11
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-9
 Architecture: i386
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3224
 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libvibrant6b (<< 6.1.20170106+dfsg1.1), libvibrant6b (>= 6.1.20170106+dfsg1), ncbi-cn3d, libc6 (>= 2.7)
 Suggests: ncbi-tools-bin
 Section: science
 Priority: optional
 Multi-Arch: foreign
 Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for biology applications (X-based utilities)
  This package includes some X-based utilities distributed with the
  NCBI C SDK: Network Entrez, Sequin, ddv, and udv.  These programs
  are not part of ncbi-tools-bin because they depend on several
  additional library packages.

drwxr-xr-x root/root         0 2020-10-13 02:08 ./
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/bin/
-rwxr-xr-x root/root   2737712 2020-10-13 02:08 ./usr/bin/Psequin
-rwxr-xr-x root/root     13892 2020-10-13 02:08 ./usr/bin/ddv
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/bin/entrez -> entrez2
-rwxr-xr-x root/root     30180 2020-10-13 02:08 ./usr/bin/entrez2
-rwxr-xr-x root/root     38376 2020-10-13 02:08 ./usr/bin/sbtedit
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/bin/sequin -> Psequin
-rwxr-xr-x root/root     13808 2020-10-13 02:08 ./usr/bin/udv
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/applications/
-rw-r--r-- root/root       258 2020-10-13 02:08 ./usr/share/applications/Psequin.desktop
-rw-r--r-- root/root       232 2020-10-13 02:08 ./usr/share/applications/ddv.desktop
-rw-r--r-- root/root       237 2020-10-13 02:08 ./usr/share/applications/entrez2.desktop
-rw-r--r-- root/root       240 2020-10-13 02:08 ./usr/share/applications/sbtedit.desktop
-rw-r--r-- root/root       212 2020-10-13 02:08 ./usr/share/applications/udv.desktop
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc-base/
-rw-r--r-- root/root       470 2019-08-04 03:05 ./usr/share/doc-base/ncbi-tools-x11.ncbi-tools-firewall
-rw-r--r-- root/root       547 2019-08-04 03:05 ./usr/share/doc-base/ncbi-tools-x11.sequin
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-x11/
-rw-r--r-- root/root       507 2019-09-08 01:32 ./usr/share/doc/ncbi-tools-x11/NEWS.Debian.gz
lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-x11/README.gz -> changelog.gz
-rw-r--r-- root/root      2123 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-x11/README.sequin.gz
-rw-r--r-- root/root      1140 2019-08-26 00:16 ./usr/share/doc/ncbi-tools-x11/bkgd.gif
-rw-r--r-- root/root     18643 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-x11/changelog.Debian.gz
-rw-r--r-- root/root     18160 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/changelog.gz
-rw-r--r-- root/root     10311 2020-10-12 23:46 ./usr/share/doc/ncbi-tools-x11/copyright
-rw-r--r-- root/root      3658 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/firedialog.gif
-rw-r--r-- root/root      8720 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-x11/firewall.html
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-x11/images/
-rw-r--r-- root/root      6736 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/affil.png
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-rw-r--r-- root/root      6311 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/contact.png
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-rw-r--r-- root/root      2050 2020-10-13 02:08 ./usr/share/doc/ncbi-tools-x11/images/logo.png
-rw-r--r-- root/root      2142 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/ncbi_sequin.css
-rw-r--r-- root/root      4891 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/net_cfg.png
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-rw-r--r-- root/root     10516 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/nucsing1.png
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-rw-r--r-- root/root     10958 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/organism.png
-rw-r--r-- root/root     12444 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/props_pg.png
-rw-r--r-- root/root     10712 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/protein1.png
-rw-r--r-- root/root     11731 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/protein2.png
-rw-r--r-- root/root     17497 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/sequence.png
-rw-r--r-- root/root      7501 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/submit.png
-rw-r--r-- root/root     15403 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/update.png
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-rw-r--r-- root/root      6850 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/images/welcome.png
-rw-r--r-- root/root       895 2019-08-26 00:16 ./usr/share/doc/ncbi-tools-x11/left.gif
-rw-r--r-- root/root      3418 2019-08-26 00:16 ./usr/share/doc/ncbi-tools-x11/ncbi2.css
-rw-r--r-- root/root     70153 2019-07-29 01:01 ./usr/share/doc/ncbi-tools-x11/sequin.htm
-rw-r--r-- root/root        50 2019-08-26 00:16 ./usr/share/doc/ncbi-tools-x11/spacer10.gif
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/man/
drwxr-xr-x root/root         0 2020-10-13 02:08 ./usr/share/man/man1/
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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/man/man1/entrez.1.gz -> entrez2.1.gz
-rw-r--r-- root/root       412 2020-10-13 02:08 ./usr/share/man/man1/entrez2.1.gz
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lrwxrwxrwx root/root         0 2020-10-13 02:08 ./usr/share/man/man1/sequin.1.gz -> Psequin.1.gz
-rw-r--r-- root/root       289 2020-10-13 02:08 ./usr/share/man/man1/udv.1.gz


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Get:64 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:65 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-2 [60.4 kB]
Get:66 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:67 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB]
Get:68 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b1 [170 kB]
Get:69 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:70 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB]
Get:71 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB]
Get:72 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:73 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.118-1 [53.5 kB]
Get:74 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB]
Get:75 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.008-1+b1 [11.8 kB]
Get:76 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.611-1 [45.7 kB]
Get:77 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB]
Get:78 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB]
Get:79 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB]
Get:80 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b2 [27.3 kB]
Get:81 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B]
Get:82 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1 [13.1 kB]
Get:83 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.8-1+b1 [195 kB]
Get:84 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB]
Get:85 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB]
Get:86 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:87 http://mirror.einval.org/debian sid/main arm64 libtype-tiny-perl all 1.012004-1 [351 kB]
Get:88 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB]
Get:89 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.08-1 [90.6 kB]
Get:90 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB]
Get:91 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1 [34.2 kB]
Get:92 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-3 [84.7 kB]
Get:93 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB]
Get:94 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB]
Get:95 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB]
Get:96 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB]
Get:97 http://mirror.einval.org/debian sid/main arm64 lintian all 2.106.1 [1332 kB]
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Setting up libclass-method-modifiers-perl (2.13-1) ...
Setting up liblist-compare-perl (0.55-1) ...
Setting up libclone-perl (0.45-1+b1) ...
Setting up libyaml-0-2:arm64 (0.2.2-1) ...
Setting up libsub-identify-perl (0.14-1+b3) ...
Setting up libcpanel-json-xs-perl (4.26-1) ...
Setting up libdevel-size-perl (0.83-1+b2) ...
Setting up unzip (6.0-26) ...
Setting up libsqlite3-0:arm64 (3.36.0-2) ...
Setting up libyaml-libyaml-perl (0.83+ds-1) ...
Setting up libio-interactive-perl (1.023-1) ...
Setting up libtry-tiny-perl (0.30-1) ...
Setting up liblzo2-2:arm64 (2.10-2) ...
Setting up libtime-moment-perl (0.44-1+b3) ...
Setting up libassuan0:arm64 (2.5.5-1) ...
Setting up libconfig-tiny-perl (2.27-1) ...
Setting up libsereal-encoder-perl (4.018+ds-1+b1) ...
Setting up liblist-utilsby-perl (0.11-1) ...
Setting up libsub-install-perl (0.928-1.1) ...
Setting up libnumber-compare-perl (0.03-1.1) ...
Setting up patchutils (0.4.2-1) ...
Setting up libjson-maybexs-perl (1.004003-1) ...
Setting up libclass-data-inheritable-perl (0.08-3) ...
Setting up libfile-find-rule-perl (0.34-1) ...
Setting up libipc-system-simple-perl (1.30-1) ...
Setting up libnet-domain-tld-perl (1.75-1.1) ...
Setting up libperlio-utf8-strict-perl (0.008-1+b1) ...
Setting up libio-prompt-tiny-perl (0.003-1) ...
Setting up lzip (1.22-3) ...
Setting up t1utils (1.41-4) ...
Setting up diffstat (1.64-1) ...
Setting up libvariable-magic-perl (0.62-1+b3) ...
Setting up libb-hooks-op-check-perl (0.22-1+b3) ...
Setting up liblist-moreutils-xs-perl (0.430-2) ...
Setting up libparams-util-perl (1.102-1+b1) ...
Setting up libtime-duration-perl (1.21-1) ...
Setting up libtext-xslate-perl (3.5.8-1+b1) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libcapture-tiny-perl (0.48-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl (0.26-1+b1) ...
Setting up libdata-validate-domain-perl (0.10-1.1) ...
Setting up libproc-processtable-perl:arm64 (0.611-1) ...
Setting up libpath-tiny-perl (0.118-1) ...
Setting up lzop (1.04-2) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libipc-run3-perl (0.048-2) ...
Setting up libaliased-perl (0.34-1.1) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006006-1) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libclass-xsaccessor-perl (1.19-3+b7) ...
Setting up libsort-versions-perl (1.62-1) ...
Setting up libexporter-tiny-perl (1.002002-1) ...
Setting up libterm-readkey-perl (2.38-1+b2) ...
Setting up libfont-ttf-perl (1.06-1.1) ...
Setting up libtext-levenshteinxs-perl (0.03-4+b8) ...
Setting up libperlio-gzip-perl (0.19-1+b7) ...
Setting up readline-common (8.1-2) ...
Setting up libhtml-html5-entities-perl (0.004-1.1) ...
Setting up libsereal-decoder-perl (4.018+ds-1+b1) ...
Setting up libmarkdown2:arm64 (2.2.7-2) ...
Setting up liburi-perl (5.08-1) ...
Setting up libemail-address-xs-perl (1.04-1+b3) ...
Setting up libfile-basedir-perl (0.09-1) ...
Setting up liblist-moreutils-perl (0.430-2) ...
Setting up libreadline8:arm64 (8.1-2) ...
Setting up libtype-tiny-perl (1.012004-1) ...
Setting up libtext-markdown-discount-perl:arm64 (0.13-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up libdata-optlist-perl (0.110-1.1) ...
Setting up gpgconf (2.2.27-2) ...
Setting up gpg (2.2.27-2) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libiterator-perl (0.03+ds1-1.1) ...
Setting up libiterator-util-perl (0.02+ds1-1.1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libconst-fast-perl (0.014-1.1) ...
Setting up libdata-dpath-perl (0.58-1) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libimport-into-perl (1.002005-1) ...
Setting up libmoo-perl (2.005004-2) ...
Setting up liblist-someutils-perl (0.58-1) ...
Setting up libmoox-aliases-perl (0.001006-1.1) ...
Setting up libb-hooks-endofscope-perl (0.24-1.1) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up lintian (2.106.1) ...
Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ...
Processing triggers for man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.32-4) ...

I: Lintian run was successful.

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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: arm64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 995984
Build-Time: 3564
Distribution: unstable
Foreign Architectures: i386
Host Architecture: i386
Install-Time: 84
Job: ncbi-tools6_6.1.20170106+dfsg1-9
Lintian: pass
Machine Architecture: arm64
Package: ncbi-tools6
Package-Time: 3692
Source-Version: 6.1.20170106+dfsg1-9
Space: 995984
Status: successful
Version: 6.1.20170106+dfsg1-9
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Finished at 2021-09-26T07:04:58Z
Build needed 01:01:32, 995984k disk space