sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | ncbi-tools6 6.1.20170106-6 (s390x) Wed, 06 Mar 2019 15:31:17 +0000 | +==============================================================================+ Package: ncbi-tools6 Version: 6.1.20170106-6 Source Version: 6.1.20170106-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-34211950-d6f5-4113-95cd-ad762893052f' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [242 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-06-0809.52.pdiff [2134 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-06-1412.06.pdiff [3400 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-06-1412.06.pdiff [3400 B] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-06-0809.52.pdiff [2325 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-06-1412.06.pdiff [3052 B] Get:8 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8013 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-06-1412.06.pdiff [3052 B] Fetched 8322 kB in 2s (4733 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: e2fsprogs libcom-err2 libext2fs2 libss2 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 938 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libext2fs2 amd64 1.44.6-1 [221 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 e2fsprogs amd64 1.44.6-1 [576 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libcom-err2 amd64 1.44.6-1 [68.5 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libss2 amd64 1.44.6-1 [72.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 938 kB in 0s (16.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11914 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.6-1_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.6-1) over (1.44.5-1) ... Setting up libext2fs2:amd64 (1.44.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11914 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.6-1_amd64.deb ... Unpacking e2fsprogs (1.44.6-1) over (1.44.5-1) ... Preparing to unpack .../libcom-err2_1.44.6-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.44.6-1) over (1.44.5-1) ... Preparing to unpack .../libss2_1.44.6-1_amd64.deb ... Unpacking libss2:amd64 (1.44.6-1) over (1.44.5-1) ... Setting up libcom-err2:amd64 (1.44.6-1) ... Setting up libss2:amd64 (1.44.6-1) ... Setting up e2fsprogs (1.44.6-1) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'ncbi-tools6' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ncbi-tools6.git Please use: git clone https://salsa.debian.org/med-team/ncbi-tools6.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 157 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main ncbi-tools6 6.1.20170106-6 (dsc) [2784 B] Get:2 http://debian.oregonstate.edu/debian unstable/main ncbi-tools6 6.1.20170106-6 (tar) [156 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main ncbi-tools6 6.1.20170106-6 (diff) [1509 kB] Fetched 157 MB in 2s (79.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/ncbi-tools6-xHZCDg/ncbi-tools6-6.1.20170106' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-tools6-xHZCDg' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-xceKsY/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-xceKsY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xceKsY/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-xceKsY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xceKsY/apt_archive ./ Sources [361 B] Get:5 copy:/<>/resolver-xceKsY/apt_archive ./ Packages [451 B] Fetched 1769 B in 0s (110 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-s390x-linux-gnu gcc-8-doc libstdc++6-8-dbg-s390x-cross gcc-8-multilib-s390x-linux-gnu libgcc1-dbg-s390x-cross libgomp1-dbg-s390x-cross libitm1-dbg-s390x-cross libatomic1-dbg-s390x-cross libasan5-dbg-s390x-cross liblsan0-dbg-s390x-cross libtsan0-dbg-s390x-cross libubsan1-dbg-s390x-cross libmpx2-dbg-s390x-cross libquadmath0-dbg-s390x-cross manpages-dev autoconf automake libtool flex bison gdb-s390x-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sbuild-build-depends-core-dummy:s390x sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 39.5 MB of archives. After this operation, 145 MB of additional disk space will be used. Get:1 copy:/<>/resolver-xceKsY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.31.1-15 [2128 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu-base amd64 8.3.0-2cross1 [190 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-s390x-linux-gnu amd64 8.3.0-2cross1 [5937 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-2cross1 [185 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.28-7cross1 [1308 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:8.3.0-2cross1 [24.8 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 8.3.0-2cross1 [67.4 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 8.3.0-2cross1 [26.3 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 8.3.0-2cross1 [8088 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 8.3.0-2cross1 [353 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 8.3.0-2cross1 [314 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 8.3.0-2cross1 [113 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-s390x-cross all 8.3.0-2cross1 [641 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu amd64 8.3.0-2cross1 [6368 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 4.19.20-1cross1 [1227 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.28-7cross1 [2255 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-s390x-cross all 8.3.0-2cross1 [1483 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-s390x-linux-gnu amd64 8.3.0-2cross1 [6515 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.6 [6568 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.5 MB in 1s (55.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11914 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Preparing to unpack .../32-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../33-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../34-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../35-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../36-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../37-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../38-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../39-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../40-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../41-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../42-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-s390x. Preparing to unpack .../43-crossbuild-essential-s390x_12.6_all.deb ... Unpacking crossbuild-essential-s390x (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:s390x. Preparing to unpack .../44-sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-s390x-linux-gnu (2.31.1-15) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-2cross1) ... Setting up libc6-s390x-cross (2.28-7cross1) ... Setting up gcc-8-s390x-linux-gnu-base:amd64 (8.3.0-2cross1) ... Setting up libatomic1-s390x-cross (8.3.0-2cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up linux-libc-dev-s390x-cross (4.19.20-1cross1) ... Setting up cross-config (2.6.15-2) ... Setting up cpp-8-s390x-linux-gnu (8.3.0-2cross1) ... Setting up libitm1-s390x-cross (8.3.0-2cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-s390x-cross (2.28-7cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libgomp1-s390x-cross (8.3.0-2cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc1-s390x-cross (1:8.3.0-2cross1) ... Setting up cpp-s390x-linux-gnu (4:8.3.0-1) ... Setting up libstdc++6-s390x-cross (8.3.0-2cross1) ... Setting up libasan5-s390x-cross (8.3.0-2cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-s390x-cross (8.3.0-2cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-s390x-cross (8.3.0-2cross1) ... Setting up gcc-8-s390x-linux-gnu (8.3.0-2cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-8-dev-s390x-cross (8.3.0-2cross1) ... Setting up g++-8-s390x-linux-gnu (8.3.0-2cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up g++-s390x-linux-gnu (4:8.3.0-1) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-s390x (12.6) ... Setting up sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-xceKsY/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-xceKsY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xceKsY/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-xceKsY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xceKsY/apt_archive ./ Sources [483 B] Get:5 copy:/<>/resolver-xceKsY/apt_archive ./ Packages [571 B] Fetched 2017 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:s390x 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-xceKsY/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:s390x. (Reading database ... 15010 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), csh | c-shell, libglu1-mesa-dev | libglu-dev, libgnutls28-dev | gnutls-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), csh, libglu1-mesa-dev, libgnutls28-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-tools6-dummy' in '/<>/resolver-xceKsY/apt_archive/sbuild-build-depends-ncbi-tools6-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-ncbi-tools6-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-xceKsY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xceKsY/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-xceKsY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xceKsY/apt_archive ./ Sources [705 B] Get:5 copy:/<>/resolver-xceKsY/apt_archive ./ Packages [757 B] Fetched 2425 B in 0s (141 kB/s) Reading package lists... Reading package lists... Install ncbi-tools6 build dependencies (apt-based resolver) ----------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils csh debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig-config fonts-dejavu-core gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libbsd0 libbsd0:s390x libc6:s390x libc6-dev:s390x libcroco3 libdrm-amdgpu1:s390x libdrm-common libdrm-dev:s390x libdrm-nouveau2:s390x libdrm-radeon1:s390x libdrm2:s390x libedit2:s390x libegl-mesa0:s390x libegl1:s390x libelf1 libelf1:s390x libevent-2.1-6:s390x libexpat1 libexpat1:s390x libexpat1-dev:s390x libffi6:s390x libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:s390x libfontconfig1-dev:s390x libfreetype6 libfreetype6:s390x libfreetype6-dev:s390x libgbm1:s390x libgcc-8-dev:s390x libgcc1:s390x libgl1:s390x libgl1-mesa-dev:s390x libgl1-mesa-dri:s390x libgl1-mesa-glx:s390x libglapi-mesa:s390x libgles1:s390x libgles2:s390x libglib2.0-0 libglu1-mesa:s390x libglu1-mesa-dev:s390x libglvnd-core-dev:s390x libglvnd-dev:s390x libglvnd0:s390x libglx-mesa0:s390x libglx0:s390x libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0:s390x libgnutls-openssl27:s390x libgnutls28-dev:s390x libgnutls30:s390x libgnutlsxx28:s390x libgomp1:s390x libhogweed4:s390x libice-dev:s390x libice6 libice6:s390x libidn2-0:s390x libidn2-dev:s390x libitm1:s390x libjpeg62-turbo libjpeg62-turbo:s390x libllvm7:s390x libmotif-common libmotif-dev:s390x libmrm4 libmrm4:s390x libncurses6 libnettle6:s390x libopengl0:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpcre16-3:s390x libpcre3:s390x libpcre3-dev:s390x libpcre32-3:s390x libpcrecpp0v5:s390x libpipeline1 libpng-dev:s390x libpng16-16 libpng16-16:s390x libpthread-stubs0-dev libpthread-stubs0-dev:s390x libsensors-config libsensors5:s390x libsigsegv2 libsm-dev:s390x libsm6 libsm6:s390x libstdc++-8-dev:s390x libstdc++6:s390x libtasn1-6:s390x libtasn1-6-dev:s390x libtinfo6:s390x libtool libubsan1:s390x libuchardet0 libuil4 libuil4:s390x libunbound8:s390x libunistring2:s390x libuuid1:s390x libwayland-client0:s390x libwayland-server0:s390x libx11-6 libx11-6:s390x libx11-data libx11-dev libx11-dev:s390x libx11-xcb-dev:s390x libx11-xcb1:s390x libxau-dev libxau-dev:s390x libxau6 libxau6:s390x libxcb-dri2-0:s390x libxcb-dri2-0-dev:s390x libxcb-dri3-0:s390x libxcb-dri3-dev:s390x libxcb-glx0:s390x libxcb-glx0-dev:s390x libxcb-present-dev:s390x libxcb-present0:s390x libxcb-randr0:s390x libxcb-randr0-dev:s390x libxcb-render0:s390x libxcb-render0-dev:s390x libxcb-shape0:s390x libxcb-shape0-dev:s390x libxcb-sync-dev:s390x libxcb-sync1:s390x libxcb-xfixes0:s390x libxcb-xfixes0-dev:s390x libxcb1 libxcb1:s390x libxcb1-dev libxcb1-dev:s390x libxdamage-dev:s390x libxdamage1:s390x libxdmcp-dev libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x libxext6 libxext6:s390x libxfixes-dev:s390x libxfixes3:s390x libxft-dev:s390x libxft2 libxft2:s390x libxm4 libxm4:s390x libxmu-dev:s390x libxmu-headers libxmu6 libxmu6:s390x libxrender-dev:s390x libxrender1 libxrender1:s390x libxshmfence-dev:s390x libxshmfence1:s390x libxt-dev:s390x libxt6 libxt6:s390x libxxf86vm-dev:s390x libxxf86vm1:s390x linux-libc-dev:s390x lsb-base m4 man-db mesa-common-dev:s390x nettle-dev:s390x pkg-config po-debconf uil uuid-dev:s390x x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x manpages-dev:s390x gmp-doc:s390x libgmp10-doc:s390x libmpfr-dev:s390x dns-root-data:s390x gnutls-bin:s390x gnutls-doc:s390x libice-doc:s390x lm-sensors lm-sensors:s390x libsm-doc:s390x libstdc++-8-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libx11-doc:s390x libxcb-doc libxcb-doc:s390x libxext-doc:s390x libxt-doc:s390x m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl freetype2-doc:s390x libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libpng-tools:s390x libtasn1-doc:s390x libltdl-dev uuid-runtime:s390x libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils csh debhelper dh-autoreconf dh-strip-nondeterminism dwz fontconfig-config fonts-dejavu-core gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libbsd0 libbsd0:s390x libc6:s390x libc6-dev:s390x libcroco3 libdrm-amdgpu1:s390x libdrm-common libdrm-dev:s390x libdrm-nouveau2:s390x libdrm-radeon1:s390x libdrm2:s390x libedit2:s390x libegl-mesa0:s390x libegl1:s390x libelf1 libelf1:s390x libevent-2.1-6:s390x libexpat1 libexpat1:s390x libexpat1-dev:s390x libffi6:s390x libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:s390x libfontconfig1-dev:s390x libfreetype6 libfreetype6:s390x libfreetype6-dev:s390x libgbm1:s390x libgcc-8-dev:s390x libgcc1:s390x libgl1:s390x libgl1-mesa-dev:s390x libgl1-mesa-dri:s390x libgl1-mesa-glx:s390x libglapi-mesa:s390x libgles1:s390x libgles2:s390x libglib2.0-0 libglu1-mesa:s390x libglu1-mesa-dev:s390x libglvnd-core-dev:s390x libglvnd-dev:s390x libglvnd0:s390x libglx-mesa0:s390x libglx0:s390x libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0:s390x libgnutls-openssl27:s390x libgnutls28-dev:s390x libgnutls30:s390x libgnutlsxx28:s390x libgomp1:s390x libhogweed4:s390x libice-dev:s390x libice6 libice6:s390x libidn2-0:s390x libidn2-dev:s390x libitm1:s390x libjpeg62-turbo libjpeg62-turbo:s390x libllvm7:s390x libmotif-common libmotif-dev:s390x libmrm4 libmrm4:s390x libncurses6 libnettle6:s390x libopengl0:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpcre16-3:s390x libpcre3:s390x libpcre3-dev:s390x libpcre32-3:s390x libpcrecpp0v5:s390x libpipeline1 libpng-dev:s390x libpng16-16 libpng16-16:s390x libpthread-stubs0-dev libpthread-stubs0-dev:s390x libsensors-config libsensors5:s390x libsigsegv2 libsm-dev:s390x libsm6 libsm6:s390x libstdc++-8-dev:s390x libstdc++6:s390x libtasn1-6:s390x libtasn1-6-dev:s390x libtinfo6:s390x libtool libubsan1:s390x libuchardet0 libuil4 libuil4:s390x libunbound8:s390x libunistring2:s390x libuuid1:s390x libwayland-client0:s390x libwayland-server0:s390x libx11-6 libx11-6:s390x libx11-data libx11-dev libx11-dev:s390x libx11-xcb-dev:s390x libx11-xcb1:s390x libxau-dev libxau-dev:s390x libxau6 libxau6:s390x libxcb-dri2-0:s390x libxcb-dri2-0-dev:s390x libxcb-dri3-0:s390x libxcb-dri3-dev:s390x libxcb-glx0:s390x libxcb-glx0-dev:s390x libxcb-present-dev:s390x libxcb-present0:s390x libxcb-randr0:s390x libxcb-randr0-dev:s390x libxcb-render0:s390x libxcb-render0-dev:s390x libxcb-shape0:s390x libxcb-shape0-dev:s390x libxcb-sync-dev:s390x libxcb-sync1:s390x libxcb-xfixes0:s390x libxcb-xfixes0-dev:s390x libxcb1 libxcb1:s390x libxcb1-dev libxcb1-dev:s390x libxdamage-dev:s390x libxdamage1:s390x libxdmcp-dev libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x libxext6 libxext6:s390x libxfixes-dev:s390x libxfixes3:s390x libxft-dev:s390x libxft2 libxft2:s390x libxm4 libxm4:s390x libxmu-dev:s390x libxmu-headers libxmu6 libxmu6:s390x libxrender-dev:s390x libxrender1 libxrender1:s390x libxshmfence-dev:s390x libxshmfence1:s390x libxt-dev:s390x libxt6 libxt6:s390x libxxf86vm-dev:s390x libxxf86vm1:s390x linux-libc-dev:s390x lsb-base m4 man-db mesa-common-dev:s390x nettle-dev:s390x pkg-config po-debconf sbuild-build-depends-ncbi-tools6-dummy:s390x uil uuid-dev:s390x x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 211 newly installed, 0 to remove and 0 not upgraded. Need to get 66.5 MB of archives. After this operation, 355 MB of additional disk space will be used. Get:1 copy:/<>/resolver-xceKsY/apt_archive ./ sbuild-build-depends-ncbi-tools6-dummy 0.invalid.0 [920 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2018112800 [28.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libmotif-common all 2.3.8-2 [40.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main s390x gcc-8-base s390x 8.3.0-2 [190 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x libgcc1 s390x 1:8.3.0-2 [24.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.28-8 [2504 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main s390x libxau6 s390x 1:1.0.8-1+b2 [19.8 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main s390x libbsd0 s390x 0.9.1-2 [98.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main s390x libxdmcp6 s390x 1:1.1.2-3 [26.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main s390x libxcb1 s390x 1.13.1-2 [134 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.7-1 [298 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main s390x libx11-6 s390x 2:1.6.7-1 [722 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main s390x libexpat1 s390x 2.2.6-1 [99.7 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-1 [90.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main s390x libpng16-16 s390x 1.6.36-5 [285 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main s390x libfreetype6 s390x 2.9.1-3 [352 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main s390x libuuid1 s390x 2.33.1-0.1 [78.3 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main s390x libfontconfig1 s390x 2.13.1-2 [339 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main s390x libjpeg62-turbo s390x 1:1.5.2-2+b1 [131 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main s390x libxext6 s390x 2:1.3.3-1+b2 [51.7 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main s390x libxrender1 s390x 1:0.9.10-1 [32.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main s390x libxft2 s390x 2.3.2-2 [55.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main s390x libice6 s390x 2:1.0.9-2 [56.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main s390x libsm6 s390x 2:1.2.3-1 [34.2 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main s390x libxt6 s390x 1:1.1.5-1 [181 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main s390x libxmu6 s390x 2:1.1.2-2 [58.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main s390x libxm4 s390x 2.3.8-2 [948 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main s390x libmrm4 s390x 2.3.8-2 [85.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.7-1 [754 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.36-5 [292 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.9.1-3 [379 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxm4 amd64 2.3.8-2 [1027 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libmrm4 amd64 2.3.8-2 [88.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libuil4 amd64 2.3.8-2 [159 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main s390x libuil4 s390x 2.3.8-2 [152 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 csh amd64 20110502-4 [241 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.1-1 [19.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.1-1 [13.0 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 8.3.0-2 [390 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 8.3.0-2 [320 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 8.3.0-2 [8180 B] Get:83 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 4.19.20-1 [1138 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.28-8 [2269 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main s390x libdrm2 s390x 2.4.97-1 [37.8 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main s390x libdrm-amdgpu1 s390x 2.4.97-1 [26.4 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libdrm-radeon1 s390x 2.4.97-1 [30.1 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libdrm-nouveau2 s390x 2.4.97-1 [25.3 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libdrm-dev s390x 2.4.97-1 [127 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x libtinfo6 s390x 6.1+20181013-2 [321 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libedit2 s390x 3.1-20181209-1 [89.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libffi6 s390x 3.2.1-9 [18.9 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libwayland-server0 s390x 1.16.0-1 [30.9 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libgbm1 s390x 18.3.4-2 [66.7 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libglapi-mesa s390x 18.3.4-2 [82.1 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libwayland-client0 s390x 1.16.0-1 [25.2 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libx11-xcb1 s390x 2:1.6.7-1 [190 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-dri2-0 s390x 1.13.1-2 [101 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-dri3-0 s390x 1.13.1-2 [100 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-present0 s390x 1.13.1-2 [99.0 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-sync1 s390x 1.13.1-2 [102 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-xfixes0 s390x 1.13.1-2 [103 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libxshmfence1 s390x 1.3-1 [8840 B] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x libegl-mesa0 s390x 18.3.4-2 [127 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libelf1 s390x 0.176-1 [157 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libevent-2.1-6 s390x 2.1.8-stable-4 [170 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libexpat1-dev s390x 2.2.6-1 [146 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1 [211 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libpng-dev s390x 1.6.36-5 [294 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libfreetype6-dev s390x 2.9.1-3 [518 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x uuid-dev s390x 2.33.1-0.1 [93.8 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libfontconfig1-dev s390x 2.13.1-2 [961 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 8.3.0-2 [68.7 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 8.3.0-2 [26.7 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 8.3.0-2 [113 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-8-dev s390x 8.3.0-2 [640 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get:122 http://debian.oregonstate.edu/debian unstable/main s390x libxau-dev s390x 1:1.0.8-1+b2 [23.1 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main s390x libxdmcp-dev s390x 1:1.1.2-3 [42.3 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main s390x libpthread-stubs0-dev s390x 0.4-1 [5344 B] Get:126 http://debian.oregonstate.edu/debian unstable/main s390x libxcb1-dev s390x 1.13.1-2 [172 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main s390x libx11-dev s390x 2:1.6.7-1 [785 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main s390x mesa-common-dev s390x 18.3.4-2 [609 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main s390x libglvnd0 s390x 1.1.0-1 [82.8 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main s390x libglvnd-core-dev s390x 1.1.0-1 [13.2 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main s390x libegl1 s390x 1.1.0-1 [31.5 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main s390x libgles1 s390x 1.1.0-1 [15.2 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main s390x libgles2 s390x 1.1.0-1 [23.7 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-glx0 s390x 1.13.1-2 [116 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main s390x libxfixes3 s390x 1:5.0.3-1 [21.8 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main s390x libxdamage1 s390x 1:1.1.4-3 [14.3 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main s390x libxxf86vm1 s390x 1:1.1.4-1+b2 [20.4 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main s390x libllvm7 s390x 1:7.0.1-8 [11.8 MB] Get:139 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main s390x libsensors5 s390x 1:3.5.0-3 [51.2 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main s390x libgl1-mesa-dri s390x 18.3.4-2 [4385 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main s390x libglx-mesa0 s390x 18.3.4-2 [180 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main s390x libglx0 s390x 1.1.0-1 [27.0 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main s390x libgl1 s390x 1.1.0-1 [126 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main s390x libopengl0 s390x 1.1.0-1 [46.1 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main s390x libglvnd-dev s390x 1.1.0-1 [5128 B] Get:147 http://debian.oregonstate.edu/debian unstable/main s390x libx11-xcb-dev s390x 2:1.6.7-1 [192 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-dri3-dev s390x 1.13.1-2 [101 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-randr0 s390x 1.13.1-2 [110 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-render0 s390x 1.13.1-2 [109 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-render0-dev s390x 1.13.1-2 [112 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-randr0-dev s390x 1.13.1-2 [114 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-shape0 s390x 1.13.1-2 [99.5 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-shape0-dev s390x 1.13.1-2 [101 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-xfixes0-dev s390x 1.13.1-2 [105 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-sync-dev s390x 1.13.1-2 [104 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-present-dev s390x 1.13.1-2 [101 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main s390x libxshmfence-dev s390x 1.3-1 [8360 B] Get:159 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-dri2-0-dev s390x 1.13.1-2 [102 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-glx0-dev s390x 1.13.1-2 [122 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get:162 http://debian.oregonstate.edu/debian unstable/main s390x libxfixes-dev s390x 1:5.0.3-1 [23.7 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get:164 http://debian.oregonstate.edu/debian unstable/main s390x libxdamage-dev s390x 1:1.1.4-3 [14.2 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get:166 http://debian.oregonstate.edu/debian unstable/main s390x libxext-dev s390x 2:1.3.3-1+b2 [106 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get:168 http://debian.oregonstate.edu/debian unstable/main s390x libxxf86vm-dev s390x 1:1.1.4-1+b2 [25.0 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main s390x libgl1-mesa-dev s390x 18.3.4-2 [47.7 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main s390x libgl1-mesa-glx s390x 18.3.4-2 [47.1 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main s390x libglu1-mesa s390x 9.0.0-2.1 [160 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main s390x libglu1-mesa-dev s390x 9.0.0-2.1 [194 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main s390x libgmp10 s390x 2:6.1.2+dfsg-4 [238 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main s390x libgmpxx4ldbl s390x 2:6.1.2+dfsg-4 [22.6 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main s390x libgmp-dev s390x 2:6.1.2+dfsg-4 [617 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main s390x libnettle6 s390x 3.4.1-1 [225 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main s390x libhogweed4 s390x 3.4.1-1 [139 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main s390x libunistring2 s390x 0.9.10-1 [370 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-0 s390x 2.0.5-1 [75.1 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit0 s390x 0.23.15-2 [313 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6 s390x 4.13-3 [49.5 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls30 s390x 3.6.6-2 [1011 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main s390x libunbound8 s390x 1.9.0-2 [425 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls-dane0 s390x 3.6.6-2 [308 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls-openssl27 s390x 3.6.6-2 [308 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main s390x libgnutlsxx28 s390x 3.6.6-2 [13.8 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-dev s390x 2.0.5-1 [77.9 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit-dev s390x 0.23.15-2 [195 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6-dev s390x 4.13-3 [102 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main s390x nettle-dev s390x 3.4.1-1 [1085 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls28-dev s390x 3.6.6-2 [977 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main s390x libice-dev s390x 2:1.0.9-2 [65.4 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main s390x libxrender-dev s390x 1:0.9.10-1 [39.9 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main s390x libxft-dev s390x 2.3.2-2 [66.6 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main s390x libsm-dev s390x 2:1.2.3-1 [37.2 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main s390x libxt-dev s390x 1:1.1.5-1 [418 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main amd64 uil amd64 2.3.8-2 [38.5 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main s390x libmotif-dev s390x 2.3.8-2 [2399 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main s390x libpcre16-3 s390x 2:8.39-11 [187 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main s390x libpcre3 s390x 2:8.39-11 [262 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main s390x libpcre32-3 s390x 2:8.39-11 [183 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main s390x libpcrecpp0v5 s390x 2:8.39-11 [151 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main s390x libpcre3-dev s390x 2:8.39-11 [481 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get:205 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-8-dev s390x 8.3.0-2 [1502 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1-dev amd64 1.13.1-2 [174 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-dev amd64 2:1.6.7-1 [827 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu-headers all 2:1.1.2-2 [51.9 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main s390x libxmu-dev s390x 2:1.1.2-2 [63.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.5 MB in 1s (66.5 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15010 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../2-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../3-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../4-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../5-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package lsb-base. 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Selecting previously unselected package sbuild-build-depends-ncbi-tools6-dummy:s390x. Preparing to unpack .../202-sbuild-build-depends-ncbi-tools6-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-ncbi-tools6-dummy:s390x (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.6-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libglvnd-core-dev:s390x (1.1.0-1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up libsensors-config (1:3.5.0-3) ... Setting up linux-libc-dev:s390x (4.19.20-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libmotif-common (2.3.8-2) ... Setting up libpthread-stubs0-dev:amd64 (0.4-1) ... Setting up libpthread-stubs0-dev:s390x (0.4-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libpng16-16:amd64 (1.6.36-5) ... Setting up gcc-8-base:s390x (8.3.0-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up pkg-config (0.29-6) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.1-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up gettext (0.19.8.1-9) ... Setting up libxau-dev:amd64 (1:1.0.8-1+b2) ... Setting up csh (20110502-4) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode Setting up libtool (2.4.6-10) ... Setting up fontconfig-config (2.13.1-2) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libfreetype6:amd64 (2.9.1-3) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... 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Setting up libpcre32-3:s390x (2:8.39-11) ... Setting up libatomic1:s390x (8.3.0-2) ... Setting up libuuid1:s390x (2.33.1-0.1) ... Setting up libsensors5:s390x (1:3.5.0-3) ... Setting up libnettle6:s390x (3.4.1-1) ... Setting up libidn2-dev:s390x (2.0.5-1) ... Setting up libglapi-mesa:s390x (18.3.4-2) ... Setting up libevent-2.1-6:s390x (2.1.8-stable-4) ... Setting up libxcb-dri2-0:s390x (1.13.1-2) ... Setting up dh-strip-nondeterminism (1.1.1-1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1) ... Setting up libxcb-randr0:s390x (1.13.1-2) ... Setting up libx11-6:s390x (2:1.6.7-1) ... Setting up libelf1:s390x (0.176-1) ... Setting up libsm6:s390x (2:1.2.3-1) ... Setting up libstdc++6:s390x (8.3.0-2) ... Setting up libp11-kit-dev:s390x (0.23.15-2) ... Setting up libwayland-client0:s390x (1.16.0-1) ... Setting up libpcrecpp0v5:s390x (2:8.39-11) ... Setting up libxcb-dri3-0:s390x (1.13.1-2) ... Setting up libwayland-server0:s390x (1.16.0-1) ... Setting up libdrm-dev:s390x (2.4.97-1) ... Setting up libxcb1-dev:s390x (1.13.1-2) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up libgbm1:s390x (18.3.4-2) ... Setting up libsm-dev:s390x (2:1.2.3-1) ... Setting up libpcre3-dev:s390x (2:8.39-11) ... Setting up libhogweed4:s390x (3.4.1-1) ... Setting up libpng-dev:s390x (1.6.36-5) ... Setting up libx11-dev:s390x (2:1.6.7-1) ... Setting up libxext6:s390x (2:1.3.3-1+b2) ... Setting up libxcb-dri3-dev:s390x (1.13.1-2) ... Setting up libxxf86vm1:s390x (1:1.1.4-1+b2) ... Setting up libasan5:s390x (8.3.0-2) ... Setting up libegl-mesa0:s390x (18.3.4-2) ... Setting up libxcb-dri2-0-dev:s390x (1.13.1-2) ... Setting up libunbound8:s390x (1.9.0-2) ... Setting up libgnutls30:s390x (3.6.6-2) ... Setting up libgmpxx4ldbl:s390x (2:6.1.2+dfsg-4) ... Setting up libfreetype6:s390x (2.9.1-3) ... Setting up libxfixes3:s390x (1:5.0.3-1) ... Setting up uuid-dev:s390x (2.33.1-0.1) ... Setting up libgnutlsxx28:s390x (3.6.6-2) ... Setting up libxcb-render0-dev:s390x (1.13.1-2) ... 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Setting up libgl1-mesa-dri:s390x (18.3.4-2) ... Setting up libfreetype6-dev:s390x (2.9.1-3) ... Setting up libxfixes-dev:s390x (1:5.0.3-1) ... Setting up libxcb-randr0-dev:s390x (1.13.1-2) ... Setting up libxt-dev:s390x (1:1.1.5-1) ... Setting up libxcb-present-dev:s390x (1.13.1-2) ... Setting up libgcc-8-dev:s390x (8.3.0-2) ... Setting up libxm4:s390x (2.3.8-2) ... Setting up libstdc++-8-dev:s390x (8.3.0-2) ... Setting up libxdamage-dev:s390x (1:1.1.4-3) ... Setting up libgnutls28-dev:s390x (3.6.6-2) ... Setting up libfontconfig1-dev:s390x (2.13.1-2) ... Setting up libglx-mesa0:s390x (18.3.4-2) ... Setting up libglx0:s390x (1.1.0-1) ... Setting up libxmu-dev:s390x (2:1.1.2-2) ... Setting up libgl1:s390x (1.1.0-1) ... Setting up libmrm4:s390x (2.3.8-2) ... Setting up libgl1-mesa-glx:s390x (18.3.4-2) ... Setting up libuil4:s390x (2.3.8-2) ... Setting up libglu1-mesa:s390x (9.0.0-2.1) ... Setting up libxft-dev:s390x (2.3.2-2) ... Setting up libglvnd-dev:s390x (1.1.0-1) ... 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Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-15 dpkg-dev_1.19.5 g++-8_8.3.0-2 gcc-8_8.3.0-2 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-s390x-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-s390x-cross_8.3.0-2cross1 linux-libc-dev_4.19.20-1 Package versions: adduser_3.118 apt_1.8.0~rc4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-15 binutils-common_2.31.1-15 binutils-s390x-linux-gnu_2.31.1-15 binutils-x86-64-linux-gnu_2.31.1-15 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-2 cpp-8-s390x-linux-gnu_8.3.0-2cross1 cpp-s390x-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-s390x_12.6 csh_20110502-4 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.1-1 diffutils_1:3.7-2 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.44.6-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.3.0-1 g++-8_8.3.0-2 g++-8-s390x-linux-gnu_8.3.0-2cross1 g++-s390x-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-2 gcc-8-base_8.3.0-2 gcc-8-cross-base_8.3.0-2cross1 gcc-8-s390x-linux-gnu_8.3.0-2cross1 gcc-8-s390x-linux-gnu-base_8.3.0-2cross1 gcc-s390x-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0~rc4 libarchive-zip-perl_1.64-1 libasan5_8.3.0-2 libasan5-s390x-cross_8.3.0-2cross1 libatomic1_8.3.0-2 libatomic1-s390x-cross_8.3.0-2cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-15 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-dev_2.28-8 libc6-dev-s390x-cross_2.28-7cross1 libc6-s390x-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-2 libcom-err2_1.44.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.248 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.5 libdrm-amdgpu1_2.4.97-1 libdrm-common_2.4.97-1 libdrm-dev_2.4.97-1 libdrm-nouveau2_2.4.97-1 libdrm-radeon1_2.4.97-1 libdrm2_2.4.97-1 libedit2_3.1-20181209-1 libegl-mesa0_18.3.4-2 libegl1_1.1.0-1 libelf1_0.176-1 libevent-2.1-6_2.1.8-stable-4 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.6-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.1-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2 libfontconfig1-dev_2.13.1-2 libfreetype6_2.9.1-3 libfreetype6-dev_2.9.1-3 libgbm1_18.3.4-2 libgcc-8-dev_8.3.0-2 libgcc-8-dev-s390x-cross_8.3.0-2cross1 libgcc1_1:8.3.0-2 libgcc1-s390x-cross_1:8.3.0-2cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-3 libgdbm6_1.18.1-3 libgl1_1.1.0-1 libgl1-mesa-dev_18.3.4-2 libgl1-mesa-dri_18.3.4-2 libgl1-mesa-glx_18.3.4-2 libglapi-mesa_18.3.4-2 libgles1_1.1.0-1 libgles2_1.1.0-1 libglib2.0-0_2.58.3-1 libglu1-mesa_9.0.0-2.1 libglu1-mesa-dev_9.0.0-2.1 libglvnd-core-dev_1.1.0-1 libglvnd-dev_1.1.0-1 libglvnd0_1.1.0-1 libglx-mesa0_18.3.4-2 libglx0_1.1.0-1 libgmp-dev_2:6.1.2+dfsg-4 libgmp10_2:6.1.2+dfsg-4 libgmpxx4ldbl_2:6.1.2+dfsg-4 libgnutls-dane0_3.6.6-2 libgnutls-openssl27_3.6.6-2 libgnutls28-dev_3.6.6-2 libgnutls30_3.6.6-2 libgnutlsxx28_3.6.6-2 libgomp1_8.3.0-2 libgomp1-s390x-cross_8.3.0-2cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu63_63.1-6 libidn2-0_2.0.5-1 libidn2-dev_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-2 libitm1-s390x-cross_8.3.0-2cross1 libjpeg62-turbo_1:1.5.2-2+b1 libllvm7_1:7.0.1-8 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-2 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmotif-common_2.3.8-2 libmotif-dev_2.3.8-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-2 libmrm4_2.3.8-2 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libopengl0_1.1.0-1 libp11-kit-dev_0.23.15-2 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre16-3_2:8.39-11 libpcre3_2:8.39-11 libpcre3-dev_2:8.39-11 libpcre32-3_2:8.39-11 libpcrecpp0v5_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libpng-dev_1.6.36-5 libpng16-16_1.6.36-5 libpthread-stubs0-dev_0.4-1 libquadmath0_8.3.0-2 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsensors-config_1:3.5.0-3 libsensors5_1:3.5.0-3 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.33.1-0.1 libss2_1.44.6-1 libstdc++-8-dev_8.3.0-2 libstdc++-8-dev-s390x-cross_8.3.0-2cross1 libstdc++6_8.3.0-2 libstdc++6-s390x-cross_8.3.0-2cross1 libsystemd0_241-1 libtasn1-6_4.13-3 libtasn1-6-dev_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-2 libubsan1_8.3.0-2 libubsan1-s390x-cross_8.3.0-2cross1 libuchardet0_0.0.6-3 libudev1_241-1 libuil4_2.3.8-2 libunbound8_1.9.0-2 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libwayland-client0_1.16.0-1 libwayland-server0_1.16.0-1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libx11-xcb-dev_2:1.6.7-1 libx11-xcb1_2:1.6.7-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.13.1-2 libxcb-dri2-0-dev_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-dri3-dev_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-glx0-dev_1.13.1-2 libxcb-present-dev_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-randr0_1.13.1-2 libxcb-randr0-dev_1.13.1-2 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shape0_1.13.1-2 libxcb-shape0-dev_1.13.1-2 libxcb-sync-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb-xfixes0_1.13.1-2 libxcb-xfixes0-dev_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxdamage-dev_1:1.1.4-3 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxft-dev_2.3.2-2 libxft2_2.3.2-2 libxm4_2.3.8-2 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libxmu-dev_2:1.1.2-2 libxmu-headers_2:1.1.2-2 libxmu6_2:1.1.2-2 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libxxf86vm-dev_1:1.1.4-1+b2 libxxf86vm1_1:1.1.4-1+b2 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.20-1 linux-libc-dev-s390x-cross_4.19.20-1cross1 login_1:4.5-1.1 lsb-base_10.2018112800 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mesa-common-dev_18.3.4-2 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 nettle-dev_3.4.1-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-ncbi-tools6-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-2 ucf_3.0038+nmu1 uil_2.3.8-2 util-linux_2.33.1-0.1 uuid-dev_2.33.1-0.1 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 28 03:52:14 2018 UTC gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-tools6_6.1.20170106-6.dsc dpkg-source: info: extracting ncbi-tools6 in /<> dpkg-source: info: unpacking ncbi-tools6_6.1.20170106.orig.tar.gz dpkg-source: info: unpacking ncbi-tools6_6.1.20170106-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-changes Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-34211950-d6f5-4113-95cd-ad762893052f SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-tools6 dpkg-buildpackage: info: source version 6.1.20170106-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aaron M. Ucko dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x dpkg-source: info: using options from ncbi-tools6-6.1.20170106/debian/source/options: --single-debian-patch debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf build/* bin/* include/* lib/* shlib mkdir -p build bin include lib rm -f debian/*.menu debian/asntool.xpm debian/ncbilogo.xpm chmod -x debian/makemenu debian/installman make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' cd build && ln -s ../make/*.unx . ln -s ../make/ln-if-absent build mv build/makeall.unx build/makefile /usr/bin/make -C build all LCL=lnx CC="s390x-linux-gnu-gcc" LDFLAGS1="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \ CFLAGS1="-c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG" \ LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \ LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a make[2]: Entering directory '/<>/build' chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . rm -f ../include/asn.h mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_connssl.h . ./ln-if-absent ../connect/ncbi_lbos.h . ./ln-if-absent ../connect/ncbi_lbosp.h . ./ln-if-absent ../connect/parson.h . ./ln-if-absent ../connect/ncbi_lbsm.h . make[2]: [makefile:714: copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . make[2]: [makefile:715: copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_socketp.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/ncbi_version.h . ./ln-if-absent ../connect/ncbi_base64.h . ./ln-if-absent ../connect/urlquery.h ../include mkdir ../include/connect chmod ug+rw,o+r ../include/connect cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . ./ln-if-absent ../ctools/*.h . mkdir ../include/ctools chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../api/*.inc . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. make[2]: [makefile:771: copy] Error 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. make[2]: [makefile:772: copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. make[2]: [makefile:773: copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. make[2]: [makefile:774: copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. make[2]: [makefile:775: copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. make[2]: [makefile:776: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. make[2]: [makefile:777: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. make[2]: [makefile:778: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. make[2]: [makefile:779: copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . make[2]: [makefile:780: copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. make[2]: [makefile:781: copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. make[2]: [makefile:782: copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. make[2]: [makefile:783: copy] Error 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . ./ln-if-absent ../algo/blast/core/*.inl . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . cp -fp ../algo/blast/composition_adjustment/*.h \ ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . echo Waiting...go Waiting...go s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ncbithr.c:289: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncbithr.c: In function 's_TlsDestroyAll': ncbithr.c:2529:11: warning: variable 'err_code' set but not used [-Wunused-but-set-variable] int err_code = 0; ^~~~~~~~ cp -p ncbithr.o ../lib s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimain.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbimain.c:56: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncbimain.c:82:1: warning: return type defaults to 'int' [-Wimplicit-int] main(int argc, char *argv[]) ^~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbibs.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbibs.c:55: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncbibs.c: In function 'Nlm_BSSeek': ncbibs.c:448:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (sp == bsp->seekptr) /* already in right position */ ^~ ncbibs.c:451:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' bsp->seekptr = sp; ^~~ In file included from ../include/ncbierr.h:105, from ../include/ncbimsg.h:78, from ../include/ncbi.h:60, from ncbibs.c:55: ncbibs.c: In function 'Nlm_BSGetUint2': ../include/ncbimisc.h:345:31: warning: statement with no effect [-Wunused-value] #define Nlm_SwapUint2(value) (value) ^ ncbibs.c:937:2: note: in expansion of macro 'Nlm_SwapUint2' Nlm_SwapUint2(retval); ^~~~~~~~~~~~~ ncbibs.c: In function 'Nlm_BSGetUint4': ../include/ncbimisc.h:349:31: warning: statement with no effect [-Wunused-value] #define Nlm_SwapUint4(value) (value) ^ ncbibs.c:947:2: note: in expansion of macro 'Nlm_SwapUint4' Nlm_SwapUint4(retval); ^~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wwwutils.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbiwww.h:106, from wwwutils.c:150: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbierr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/string.h:494, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from corepriv.h:85, from ncbierr.c:235: In function 'strncat', inlined from 'ErrMsgRoot_fopen.isra.2' at ncbierr.c:955:13: /usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' specified bound 4096 equals destination size [-Wstringop-overflow=] return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbienv.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbienv.c:310: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbifile.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbifile.c:48: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiprop.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbiprop.c:104: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimath.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbimath.h:69, from ncbimath.c:90: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncbimath.c: In function 'general_lngamma': ncbimath.c:230:5: warning: 'y[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] ++y[0]; ~^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimem.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbimem.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimisc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbimisc.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncbimisc.c: In function 'Nlm_MD5Final': ncbimisc.c:2250:26: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */ ^ ncbimisc.c: In function 'XmlPathSuffixIs': ncbimisc.c:2966:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (StringHasNoText (parentFilter) || parent != NULL && StringICmp (parent->name, parentFilter) == 0) { ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimsg.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from corepriv.h:85, from ncbimsg.c:167: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbistr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbistr.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisgml.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbisgml.c:83: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/string.h:494, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ncbisgml.c:83: In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:292:5: /usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' specified bound 100 equals destination size [-Wstringop-overflow=] return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:273:5: /usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' specified bound 100 equals destination size [-Wstringop-overflow=] return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:362:5: /usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' specified bound 100 equals destination size [-Wstringop-overflow=] return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:348:5: /usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' specified bound 100 equals destination size [-Wstringop-overflow=] return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbitime.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbitime.c:77: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbilang.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbilang.c:57: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnbufo.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asnbufo.c:62: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asndebin.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asndebin.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asndebin.c: In function 'AsnBinReadVal': asndebin.c:565:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ asndebin.c:568:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' if (atp == NULL) ^~ asndebin.c:634:13: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else /* empty sequence written */ ^~~~ asndebin.c:636:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' while (atp2 != NULL) ^~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnenbin.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnenbin.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngen.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asngen.c:80: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asngen.c: In function 'AsnFindNthPieceOfObject': asngen.c:540:16: warning: variable 'aeop' set but not used [-Wunused-but-set-variable] AsnExpOptPtr aeop; ^~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnio.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnio.c:54: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asnio.c: In function 'AsnIoWriteBlock': asnio.c:698:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else /* use alternative write function */ ^~~~ asnio.c:701:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' if (retval != bytes_to_write) ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlex.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnlex.c:52: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asnlex.c: In function 'AsnTxtReadId': asnlex.c:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((token == END_STRUCT) && ((isa == SEQ_TYPE) || (isa == SET_TYPE))) ^~ asnlex.c:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (token != IDENT) ^~ asnlex.c: In function 'AsnTxtReadVal': asnlex.c:345:13: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else /* empty sequence written */ ^~~~ asnlex.c:347:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' while (atp2 != NULL) ^~~~~ At top level: asnlex.c:1290:13: warning: 'AsnLexWordUTF8' defined but not used [-Wunused-function] static Int2 AsnLexWordUTF8 (AsnIoPtr aip) ^~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlext.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnlext.c:57: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnout.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnout.c:79: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asnout.c: In function 'AsnOutput': asnout.c:159:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ asnout.c:162:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (i = 0; i < 12; i++) ^~~ asnout.c:213:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! loader) ^~ asnout.c:216:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' attvp = p.root_tmpvalue.next; ^~~~~ asnout.c:270:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! loader) ^~ asnout.c:273:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' attp = p.root_tmptype.next; ^~~~ asnout.c:450:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! loader) ^~ asnout.c:453:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' i = 1; ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnprint.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asnprint.c:53: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asnprint.c: In function 'GetXMLModuleName': asnprint.c:102:2: warning: statement with no effect [-Wunused-value] for (currmod; currmod != NULL; currmod = currmod->next) ^~~ asnprint.c: In function 'AsnPrintCloseStruct': asnprint.c:1774:7: warning: variable 'isa' set but not used [-Wunused-but-set-variable] Int2 isa; ^~~ asnprint.c: In function 'AsnPrintModuleXMLInc': asnprint.c:2095:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] CharPtr ptr; ^~~ asnprint.c: In function 'AsnPrintTreeType': asnprint.c:2575:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] ptr = (Uint4)(atp); ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asntypes.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from asntypes.c:111: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asntypes.c: In function 'AsnEnumTypeStr': asntypes.c:1383:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((atp->type->isa != ENUM_TYPE) && (atp->type->isa != INTEGER_TYPE)) ^~ asntypes.c:1386:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' avnp = (AsnValxNodePtr) atp->branch; ^~~~ asntypes.c: In function 'AsnTreeLoad': asntypes.c:1274:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d %d %d", &numval, &numtype, &nummod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asntypes.c:1288:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d %s %ld %lf %d", &isa, name, &intvalue, &realvalue, &next); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asntypes.c:1301:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d %s %d %d %d %d %d %d %d %d %d %d %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &isa, name, &tagclass, &tagnumber, bools, bools+1, bools+2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bools+3, bools+4, &defaultvalue, &type, &branch, &next); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asntypes.c:1333:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%s %s %d %d", name, fname, &type, &next); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngenob.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asngenob.c:72: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gifgen.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from gifgen.c:137: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from ../include/ncbi.h:59, from gifgen.c:137: gifgen.c: In function 'gdImageSetClip': ../include/ncbimem.h:194:21: warning: '__builtin_memcmp_eq' reading 16 bytes from a region of size 8 [-Wstringop-overflow=] #define Nlm_MemCmp memcmp ../include/ncbimem.h:213:17: note: in expansion of macro 'Nlm_MemCmp' #define MemCmp Nlm_MemCmp ^~~~~~~~~~ gifgen.c:1850:17: note: in expansion of macro 'MemCmp' if (clip && MemCmp(&clip, &empty_clip, sizeof(gdRect))) { ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF togif.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from togif.c:111: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ togif.c: In function 'gdImageCreateFromGif': togif.c:961:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable] int AspectRatio; ^~~~~~~~~~~ togif.c:960:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable] int Background; ^~~~~~~~~~ togif.c:959:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable] int ColorResolution; ^~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithrs.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ncbithrs.c:289: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncbithrs.c: In function 's_TlsDestroyAll': ncbithrs.c:2529:11: warning: unused variable 'err_code' [-Wunused-variable] int err_code = 0; ^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c regex.c: In function 're_match_2': regex.c:3762:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] if ((int) old_regend[r] >= (int) regstart[r]) ^ regex.c:3762:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] if ((int) old_regend[r] >= (int) regstart[r]) ^ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:3768:19: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p1 + mcnt, d, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:3768:19: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p1 + mcnt, d, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable] char *destination; \ ^~~~~~~~~~~ regex.c:3768:19: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p1 + mcnt, d, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:3915:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, NULL, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:3915:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, NULL, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable] char *destination; \ ^~~~~~~~~~~ regex.c:3915:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, NULL, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:3968:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, d, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:3968:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, d, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable] char *destination; \ ^~~~~~~~~~~ regex.c:3968:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (p + mcnt, d, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] high_reg = (unsigned) POP_FAILURE_ITEM (); \ ^ regex.c:4074:13: note: in expansion of macro 'POP_FAILURE_POINT' POP_FAILURE_POINT (sdummy, pdummy, ^~~~~~~~~~~~~~~~~ regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] low_reg = (unsigned) POP_FAILURE_ITEM (); \ ^ regex.c:4074:13: note: in expansion of macro 'POP_FAILURE_POINT' POP_FAILURE_POINT (sdummy, pdummy, ^~~~~~~~~~~~~~~~~ regex.c:4071:25: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable] const char *sdummy; ^~~~~~ regex.c:4070:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable] unsigned char *pdummy; ^~~~~~ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:4107:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:4107:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable] char *destination; \ ^~~~~~~~~~~ regex.c:4107:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2421:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (lowest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:4120:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item ^ regex.c:2424:5: note: in expansion of macro 'PUSH_FAILURE_ITEM' PUSH_FAILURE_ITEM (highest_active_reg); \ ^~~~~~~~~~~~~~~~~ regex.c:4120:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable] char *destination; \ ^~~~~~~~~~~ regex.c:4120:11: note: in expansion of macro 'PUSH_FAILURE_POINT' PUSH_FAILURE_POINT (0, 0, -2); ^~~~~~~~~~~~~~~~~~ regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] high_reg = (unsigned) POP_FAILURE_ITEM (); \ ^ regex.c:4288:11: note: in expansion of macro 'POP_FAILURE_POINT' POP_FAILURE_POINT (d, p, ^~~~~~~~~~~~~~~~~ regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] low_reg = (unsigned) POP_FAILURE_ITEM (); \ ^ regex.c:4288:11: note: in expansion of macro 'POP_FAILURE_POINT' POP_FAILURE_POINT (d, p, ^~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tsprintf.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiargs.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ncbiargs.c:82: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tree.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/treemgr.h:67, from tree.c:79: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/matrix.h:44, from matrix.c:41: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_socket.c:75: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncbi_socket.c: In function 's_GetLocalPort': ncbi_socket.c:440:50: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0 ^~~~~~~ In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/s390x-linux-gnu/include/sys/socket.h:116:12: note: expected 'socklen_t * restrict' {aka 'unsigned int * restrict'} but argument is of type 'TSOCK_socklen_t *' {aka 'int *'} extern int getsockname (int __fd, __SOCKADDR_ARG __addr, ^~~~~~~~~~~ ncbi_socket.c: In function 's_IsConnected_': ncbi_socket.c:2572:73: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign] if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len) ^~~~ In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/s390x-linux-gnu/include/sys/socket.h:208:12: note: expected 'socklen_t * restrict' {aka 'unsigned int * restrict'} but argument is of type 'TSOCK_socklen_t *' {aka 'int *'} extern int getsockopt (int __fd, int __level, int __optname, ^~~~~~~~~~ ncbi_socket.c: In function 's_CreateOnTop': ncbi_socket.c:4435:35: warning: pointer targets in passing argument 3 of 'getpeername' differ in signedness [-Wpointer-sign] if (getpeername(fd, &peer.sa, &peerlen) != 0) { ^~~~~~~~ In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/s390x-linux-gnu/include/sys/socket.h:130:12: note: expected 'socklen_t * restrict' {aka 'unsigned int * restrict'} but argument is of type 'TSOCK_socklen_t *' {aka 'int *'} extern int getpeername (int __fd, __SOCKADDR_ARG __addr, ^~~~~~~~~~~ ncbi_socket.c:4471:43: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] if (getsockname(fd, &peer.sa, &peerlen) != 0) ^~~~~~~~ In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/s390x-linux-gnu/include/sys/socket.h:116:12: note: expected 'socklen_t * restrict' {aka 'unsigned int * restrict'} but argument is of type 'TSOCK_socklen_t *' {aka 'int *'} extern int getsockname (int __fd, __SOCKADDR_ARG __addr, ^~~~~~~~~~~ ncbi_socket.c: In function 's_CreateListening': ncbi_socket.c:4865:48: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] error = getsockname(x_lsock, &addr.sa, &addrlen) != 0 ^~~~~~~~ In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/s390x-linux-gnu/include/sys/socket.h:116:12: note: expected 'socklen_t * restrict' {aka 'unsigned int * restrict'} but argument is of type 'TSOCK_socklen_t *' {aka 'int *'} extern int getsockname (int __fd, __SOCKADDR_ARG __addr, ^~~~~~~~~~~ ncbi_socket.c: In function 's_Accept': ncbi_socket.c:5105:49: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign] if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) { ^~~~~~~~ In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/s390x-linux-gnu/include/sys/socket.h:232:12: note: expected 'socklen_t * restrict' {aka 'unsigned int * restrict'} but argument is of type 'TSOCK_socklen_t *' {aka 'int *'} extern int accept (int __fd, __SOCKADDR_ARG __addr, ^~~~~~ ncbi_socket.c: In function 's_RecvMsg': ncbi_socket.c:5409:52: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign] (struct sockaddr*) &sin, &sinlen); ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/sys/socket.h:269, from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/s390x-linux-gnu/include/bits/socket2.h:64:1: note: expected 'socklen_t * restrict' {aka 'unsigned int * restrict'} but argument is of type 'TSOCK_socklen_t *' {aka 'int *'} recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, ^~~~~~~~ ncbi_socket.c: In function 'TRIGGER_Create': ncbi_socket.c:5661:18: warning: unused variable 'x_id' [-Wunused-variable] unsigned int x_id = ++s_ID_Counter; ^~~~ ncbi_socket.c: In function 'DSOCK_Bind': ncbi_socket.c:7390:51: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] error = getsockname(sock->sock, &addr.sa, &addrlen) != 0 ^~~~~~~~ In file included from ncbi_socketp.h:54, from ncbi_connssl.h:37, from ncbi_socket.c:76: /usr/s390x-linux-gnu/include/sys/socket.h:116:12: note: expected 'socklen_t * restrict' {aka 'unsigned int * restrict'} but argument is of type 'TSOCK_socklen_t *' {aka 'int *'} extern int getsockname (int __fd, __SOCKADDR_ARG __addr, ^~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_buffer.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_types.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_core.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_core_c.c:36: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_util.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_util.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_priv.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_ansi_ext.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_connection.c:34: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_connector.c:34: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_connutil.c:34: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_file_connector.c:36: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_assert.h:35, from ncbi_priv.h:61, from ncbi_heapmgr.c:115: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_http_connector.c:36: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_server_info.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_service.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_version.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_version.h:37, from ncbi_version.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_service_connector.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_ftp_connector.c:49: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_dispd.c:34: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_local.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_local.c:34: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_socket_connector.c:36: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urlquery.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from asnbuild.h:70, from urlquery.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF binary.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/binary.h:60, from binary.c:59: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_sendmail.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn_connection.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbos.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_lbos.c:36: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncbi_lbos.c: In function 's_LBOS_ReadLbosresolver': ncbi_lbos.c:756:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (s_LBOS_Lbosresolver == NULL) ^~ ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' s_LBOS_Lbosresolver = strdup(str + 7); ^~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF parson.c parson.c: In function 'remove_comments': parson.c:281:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (i = 0; i < (ptr - string) + end_token_len; i++) ^~~ parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' string = ptr + end_token_len - 1; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ipv6.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_ipv6.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnflpt.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from drwnflpt.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnfspc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from drwnfspc.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnmfls.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from drwnmfls.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ rm -f libncbi.a ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o ncbi_lbos.o parson.o ncbi_ipv6.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbi.a ../lib ranlib ../lib/libncbi.a s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_LIBGNUTLS ncbi_gnutls.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ncbi_config.h:38, from ncbi_ansi_ext.h:37, from ncbi_gnutls.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncbi_gnutls.c: In function 's_GnuTlsCreate': ncbi_gnutls.c:293:5: warning: 'gnutls_connection_end_t' is deprecated [-Wdeprecated-declarations] gnutls_connection_end_t end = (side == eSOCK_Client ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ncbi_gnutls.c:35: ncbi_gnutls.c: In function 's_GnuTlsInit': ncbi_priv.h:217:33: warning: 'version' may be used uninitialized in this function [-Wmaybe-uninitialized] _mess.message = NcbiMessagePlusError(&_mess.dynamic, \ ^~~~~~~~~~~~~~~~~~~~ ncbi_gnutls.c:582:17: note: 'version' was declared here const char* version; ^~~~~~~ rm -f libconnssl.a ar cru libconnssl.a ncbi_gnutls.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libconnssl.a ../lib ranlib ../lib/libconnssl.a s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objacces.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnacces.h:9, from objacces.c:65: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objacces.c: In function 'LinkSetAsnWrite': objacces.c:140:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objacces.c:143:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (lsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objacces.c: In function 'LinkSetAsnRead': objacces.c:216:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objacces.c:219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' lsp = LinkSetNew(); ^~~ objacces.c:220:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (lsp == NULL) ^~ objacces.c:223:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ ^~ objacces.c:226:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objacces.c:228:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) /* get the num */ ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalign.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objalign.h:103, from objalign.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objalign.c: In function 'CommonSeqAlignLabelFunc': objalign.c:135:27: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] CharPtr curr, typelabel, tmp; ^~~ objalign.c: In function 'SeqAlignAsnRead': objalign.c:597:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:600:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' sap = SeqAlignNew(); ^~~ objalign.c:601:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (sap == NULL) ^~ objalign.c:604:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ ^~ objalign.c: In function 'DenseDiagAsnWrite': objalign.c:1020:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:1023:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ddp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objalign.c: In function 'DenseDiagAsnRead': objalign.c:1112:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:1115:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ddp = DenseDiagNew(); ^~~ objalign.c:1116:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ddp == NULL) ^~ objalign.c:1119:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ ^~ objalign.c: In function 'DenseSegAsnWrite': objalign.c:1268:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:1271:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (dsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objalign.c: In function 'DenseSegAsnRead': objalign.c:1374:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' dsp = DenseSegNew(); ^~~ objalign.c:1378:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (dsp == NULL) ^~ objalign.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ ^~ objalign.c: In function 'StdSegAsnWrite': objalign.c:1559:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:1562:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objalign.c:1581:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! SeqLocSetAsnWrite(ssp->loc, aip, STD_SEG_loc, STD_SEG_loc_E)) ^~ objalign.c:1584:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ssp->scores != NULL) ^~ objalign.c: In function 'StdSegAsnRead': objalign.c:1626:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:1629:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ssp = StdSegNew(); ^~~ objalign.c:1630:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ssp == NULL) ^~ objalign.c:1633:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ ^~ objalign.c: In function 'SeqAlignSetAsnWrite': objalign.c:1704:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:1708:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' oldsap = sap; ^~~~~~ objalign.c: In function 'PackSegAsnWrite': objalign.c:1892:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:1895:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (psp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objalign.c:1926:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnCloseStruct(aip, PACKED_SEG_starts, (Pointer)psp->starts)) ^~ objalign.c:1929:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' av.ptrvalue = psp->present; ^~ objalign.c: In function 'PackSegAsnRead': objalign.c:1999:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objalign.c:2002:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' psp = PackSegNew(); ^~~ objalign.c:2003:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (psp == NULL) ^~ objalign.c:2006:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ ^~ objalign.c: In function 'SplicedSegAsnRead': objalign.c:2179:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalign.c: In function 'SparseSegAsnRead': objalign.c:2422:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalign.c: In function 'SplicedExonAsnRead': objalign.c:2614:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalign.c: In function 'SplicedSegModifierFree': objalign.c:2875:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objalign.c: In function 'ProductPosFree': objalign.c:3050:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objalign.c: In function 'SplicedExonChunkFree': objalign.c:3225:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objalign.c: In function 'SpliceSiteAsnRead': objalign.c:3469:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalign.c: In function 'ProtPosAsnRead': objalign.c:3626:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalign.c: In function 'SparseAlignAsnRead': objalign.c:3798:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalign.c: In function 'SparseSegExtAsnRead': objalign.c:4020:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalign.c: In function 'SplicedSegModifierAsnRead': objalign.c:2955:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objalign.c: In function 'SplicedExonChunkAsnRead': objalign.c:3326:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objalign.c: In function 'ProductPosAsnRead': objalign.c:3130:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objall.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objall.h:64, from objall.c:63: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objbibli.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnbibli.h:9, from objbibli.c:113: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objbibli.c: In function 'AffilAsnRead': objbibli.c:208:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' afp = AffilNew(); ^~~ objbibli.c: In function 'AffilAsnWrite': objbibli.c:296:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (afp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'AuthListFree': objbibli.c:458:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alp->affil != NULL) ^~ objbibli.c:460:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return (AuthListPtr)MemFree(alp); ^~~~~~ objbibli.c: In function 'AuthListAsnRead': objbibli.c:489:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:492:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' alp = AuthListNew(); ^~~ objbibli.c: In function 'AuthListAsnWrite': objbibli.c:583:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:586:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (alp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c:590:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnOpenStruct(aip, atp, (Pointer)alp)) /* open AuthList SEQUENCE */ ^~ objbibli.c:593:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' av.ptrvalue = alp->names; ^~ objbibli.c: In function 'AuthorFree': objbibli.c:677:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ap->affil != NULL) ^~ objbibli.c:679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return (AuthorPtr)MemFree(ap); ^~~~~~ objbibli.c: In function 'AuthorAsnRead': objbibli.c:707:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:710:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ap = AuthorNew(); ^~ objbibli.c: In function 'AuthorAsnWrite': objbibli.c:779:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:782:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ap == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'CitArtAsnRead': objbibli.c:925:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' cap = CitArtNew(); ^~~ objbibli.c: In function 'CitArtAsnWrite': objbibli.c:1027:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1030:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (cap == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c:1034:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnOpenStruct(aip, atp, (Pointer)cap)) /* open the SEQUENCE */ ^~ objbibli.c:1037:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (cap->title != NULL) ^~ objbibli.c: In function 'ImprintAsnRead': objbibli.c:1152:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1155:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ip = ImprintNew(); ^~ objbibli.c: In function 'ImprintAsnWrite': objbibli.c:1251:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1254:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'CitRetractAsnRead': objbibli.c:1391:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1394:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' crp = CitRetractNew(); ^~~ objbibli.c: In function 'CitRetractAsnWrite': objbibli.c:1445:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1448:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (crp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'CitJourAsnRead': objbibli.c:1524:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1527:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' cjp = CitJourNew(); ^~~ objbibli.c: In function 'CitJourAsnWrite': objbibli.c:1576:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1579:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (cjp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c:1585:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! ImprintAsnWrite(cjp->imp, aip, CIT_JOUR_imp)) ^~ objbibli.c:1587:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (! AsnCloseStruct(aip, atp, (Pointer)cjp)) /* end SEQUENCE */ ^~ objbibli.c: In function 'CitBookAsnRead': objbibli.c:1676:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' cbp = CitBookNew(); ^~~ objbibli.c: In function 'CitBookAsnWrite': objbibli.c:1744:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1747:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (cbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c:1760:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! ImprintAsnWrite(cbp->imp, aip, CIT_BOOK_imp)) ^~ objbibli.c:1762:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (! AsnCloseStruct(aip, atp, (Pointer)cbp)) /* end SEQUENCE */ ^~ objbibli.c: In function 'CitProcAsnWrite': objbibli.c:1879:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1882:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c:1901:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnCloseStruct(aip, CIT_PROC_meet, (Pointer)cpp->otherdata)) ^~ objbibli.c:1903:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (! AsnCloseStruct(aip, atp, (Pointer)cpp)) /* end SEQUENCE */ ^~ objbibli.c: In function 'CitLetAsnWrite': objbibli.c:1995:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:1998:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (clp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'CitPatAsnRead': objbibli.c:2091:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:2094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' cpp = CitPatNew(); ^~~ objbibli.c: In function 'CitPatAsnWrite': objbibli.c:2213:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:2216:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'IdPatAsnRead': objbibli.c:2346:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:2349:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' idp = IdPatNew(); ^~~ objbibli.c: In function 'IdPatAsnWrite': objbibli.c:2412:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:2415:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (idp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'CitGenAsnRead': objbibli.c:2546:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:2549:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' cgp = CitGenNew(); ^~~ objbibli.c: In function 'CitGenAsnWrite': objbibli.c:2627:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:2630:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (cgp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'TitleAsnWrite': objbibli.c:2825:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:2828:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (tp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'CitSubFree': objbibli.c:2909:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (csp == NULL) ^~ objbibli.c:2912:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' AuthListFree(csp->authors); ^~~~~~~~~~~~ objbibli.c: In function 'CitSubAsnRead': objbibli.c:2943:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:2946:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' csp = CitSubNew(); ^~~ objbibli.c:2958:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:2961:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (atp == CIT_SUB_imp) ^~ objbibli.c: In function 'CitSubAsnWrite': objbibli.c:3029:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:3032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (csp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c:3038:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AuthListAsnWrite(csp->authors, aip, CIT_SUB_authors)) ^~ objbibli.c:3041:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (csp->imp != NULL) ^~ objbibli.c: In function 'PatPrioritySetAsnRead': objbibli.c:3694:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ppp == NULL) ^~ objbibli.c:3697:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (head == NULL) ^~ objbibli.c:3715:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:3717:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ppp->date = DateAsnRead(aip, atp); ^~~ objbibli.c: In function 'PatPrioritySetAsnWrite': objbibli.c:3755:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnOpenStruct(aip, set, (Pointer)ppp)) /* open the SEQUENCE OF */ ^~ objbibli.c:3758:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' for (tmp = ppp; tmp != NULL; tmp = tmp->next) ^~~ objbibli.c: In function 'ArticleIdAsnRead': objbibli.c:3849:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:3852:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' aidp = ArticleIdNew(); ^~~~ objbibli.c: In function 'ArticleIdAsnWrite': objbibli.c:3925:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:3928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (aidp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objbibli.c: In function 'PubStatusDateAsnRead': objbibli.c:4039:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:4042:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' psdp = PubStatusDateNew(); ^~~~ objbibli.c: In function 'PubStatusDateAsnWrite': objbibli.c:4091:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objbibli.c:4094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (psdp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfeat.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objfeat.h:48, from objfeat.c:53: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objfeat.c: In function 'ModelEvidenceSupportAsnRead': objfeat.c:1500:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'ExperimentSupportAsnRead': objfeat.c:1748:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'ProgramIdAsnRead': objfeat.c:1933:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'EvidenceBasisAsnRead': objfeat.c:2103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'InferenceSupportAsnRead': objfeat.c:2267:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'ModelEvidenceItemAsnRead': objfeat.c:2483:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'SeqFeatSupportAsnRead': objfeat.c:2688:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'RNAQualAsnRead': objfeat.c:4244:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'RNAQualSetAsnRead': objfeat.c:4396:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'RNAGenAsnRead': objfeat.c:4524:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'GeneNomenclatureAsnRead': objfeat.c:4707:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'OrgNameMatch': objfeat.c:5957:28: warning: self-comparison always evaluates to false [-Wtautological-compare] || onp2->mgcode != onp2->mgcode ^~ objfeat.c: In function 'TaxElementAsnWrite': objfeat.c:7399:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnOpenStruct(aip, atp, (Pointer)tep)) ^~ objfeat.c:7402:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' av.intvalue = (Int4)(tep->fixed_level); ^~ objfeat.c: In function 'PCRPrimerAsnRead': objfeat.c:8276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'PCRPrimerSetAsnRead': objfeat.c:8421:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'PCRReactionAsnRead': objfeat.c:8542:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'PCRReactionSetAsnRead': objfeat.c:8685:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'CloneRefAsnRead': objfeat.c:8812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'CloneSeqSetAsnRead': objfeat.c:9005:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'CloneSeqAsnRead': objfeat.c:9135:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'SomaticOriginAsnRead': objfeat.c:9487:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'SomaticOriginConditionAsnRead': objfeat.c:9566:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'VariationRefAsnRead': objfeat.c:9645:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'Consequence_loss_of_heterozygosityAsnRead': objfeat.c:10687:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'Consequence_frameshiftAsnRead': objfeat.c:10765:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'VarRefDataFree': objfeat.c:10865:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objfeat.c: In function 'VarRefDataSetAsnRead': objfeat.c:10918:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'Consequence_elementFree': objfeat.c:11112:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objfeat.c: In function 'VariationInstAsnRead': objfeat.c:11241:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: At top level: objfeat.c:11393:1: warning: "/*" within comment [-Wcomment] /************************************************** objfeat.c: In function 'VariantPropertiesAsnRead': objfeat.c:11422:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'PhenotypeAsnRead': objfeat.c:11746:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'PopulationDataAsnRead': objfeat.c:11945:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'ExtLocAsnRead': objfeat.c:12161:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objfeat.c: In function 'Seq_seqFree': objfeat.c:12327:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objfeat.c: In function 'DeltaItemAsnRead': objfeat.c:12360:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgen.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asngen.h:9, from objgen.c:47: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objgen.c: In function 'DateClean': objgen.c:161:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (dp == NULL) ^~ objgen.c:164:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' memset(dp, 0, sizeof(NCBI_Date)); ^~~~~~ objgen.c: In function 'DateAsnWrite': objgen.c:399:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:402:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (dp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objgen.c: In function 'DateAsnRead': objgen.c:494:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' dp = DateNew(); ^~ objgen.c:498:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (dp == NULL) ^~ objgen.c:501:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the CHOICE value (nothing) */ ^~ objgen.c: In function 'DbtagFree': objgen.c:752:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (dbt == NULL) ^~ objgen.c:755:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' dbt->tag = ObjectIdFree(dbt->tag); ^~~ objgen.c: In function 'DbtagAsnRead': objgen.c:784:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:787:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' dbt = DbtagNew(); ^~~ objgen.c:788:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (dbt == NULL) ^~ objgen.c:791:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the START_STRUCT */ ^~ objgen.c:799:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (dbt->tag == NULL) ^~ objgen.c:802:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' atp = AsnReadId(aip, amp, atp); if (atp == NULL) goto erret; /* END_STRUCT */ ^~~ objgen.c: In function 'DbtagAsnWrite': objgen.c:833:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:836:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (dbt == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objgen.c: In function 'ObjectIdAsnRead': objgen.c:980:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:983:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the CHOICE value (nothing) */ ^~ objgen.c:989:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (oid == NULL) ^~ objgen.c:991:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (atp == OBJECT_ID_id) ^~ objgen.c: In function 'ObjectIdAsnWrite': objgen.c:1024:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:1027:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (oid == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objgen.c: In function 'NameStdFree': objgen.c:1174:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (nsp == NULL) ^~ objgen.c:1177:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' for (i = 0; i < 7; i++) ^~~ objgen.c: In function 'NameStdAsnRead': objgen.c:1208:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:1211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' nsp = NameStdNew(); ^~~ objgen.c:1212:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (nsp == NULL) ^~ objgen.c:1215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the START_STRUCT */ ^~ objgen.c: In function 'NameStdAsnWrite': objgen.c:1271:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:1274:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (nsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objgen.c: In function 'PersonIdFree': objgen.c:1368:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (pid == NULL) ^~ objgen.c:1371:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pid->choice == 1) /* Dbtag */ ^~ objgen.c: In function 'PersonIdAsnWrite': objgen.c:1464:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:1467:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pid == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objgen.c: In function 'IntFuzzAsnRead': objgen.c:1682:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:1685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ifp = IntFuzzNew(); ^~~ objgen.c:1686:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ifp == NULL) ^~ objgen.c:1689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the CHOICE (nothing) */ ^~ objgen.c: In function 'UserFieldAsnRead': objgen.c:1944:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:1947:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ufp = UserFieldNew(); ^~~ objgen.c: In function 'UserObjectAsnRead': objgen.c:2434:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objgen.c:2437:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' uop = UserObjectNew(); ^~~ objgen.c:2438:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (uop == NULL) ^~ objgen.c:2441:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) goto erret; /* read the start struct */ ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objloc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objloc.h:88, from objloc.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objloc.c: In function 'SeqIdAsnWrite': objloc.c:313:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:316:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'SeqIdAsnRead': objloc.c:443:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:446:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' anp = ValNodeNew(NULL); ^~~ objloc.c: In function 'SeqIdDup': objloc.c:587:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (oldid == NULL) ^~ objloc.c:590:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' newid = ValNodeNew(NULL); ^~~~~ objloc.c: In function 'SeqIdSetAsnRead': objloc.c:752:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (AsnReadVal(aip, atp, &av) <= 0) /* end struct */ ^~ objloc.c:754:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (first == NULL) ^~ objloc.c: In function 'SeqIdSetAsnWrite': objloc.c:786:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp2 == NULL) ^~ objloc.c:789:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (anp == NULL) { AsnNullValueMsg(aip, settype); goto erret; } ^~ objloc.c: In function 'TextSeqIdAsnWrite': objloc.c:864:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:867:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (tsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'TextSeqIdAsnRead': objloc.c:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:937:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' tsip = TextSeqIdNew(); ^~~~ objloc.c:938:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (tsip == NULL) ^~ objloc.c:941:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if ((AsnReadVal(aip, oldtype, &av)) <= 0) /* read the START_STRUCT */ ^~ objloc.c: In function 'PatentSeqIdAsnWrite': objloc.c:1018:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:1021:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (psip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'PatentSeqIdAsnRead': objloc.c:1068:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:1071:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' psip = PatentSeqIdNew(); ^~~~ objloc.c:1072:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (psip == NULL) ^~ objloc.c:1075:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) /* read the START_STRUCT */ ^~ objloc.c: In function 'GiimAsnWrite': objloc.c:1151:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:1154:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (gip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'GiimAsnRead': objloc.c:1216:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (gip == NULL) ^~ objloc.c:1219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ ^~ objloc.c: In function 'PDBSeqIdAsnWrite': objloc.c:1305:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:1308:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pdbsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'PDBSeqIdAsnRead': objloc.c:1374:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pdbsip = PDBSeqIdNew(); ^~~~~~ objloc.c:1378:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (pdbsip == NULL) ^~ objloc.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if ((AsnReadVal(aip, oldtype, &av)) <= 0) /* read the START_STRUCT */ ^~ objloc.c: In function 'SeqLocAsnWrite': objloc.c:1528:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:1531:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'SeqLocAsnRead': objloc.c:1624:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:1627:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' anp = ValNodeNew(NULL); ^~~ objloc.c:1628:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (anp == NULL) ^~ objloc.c:1631:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) /* read the CHOICE value (nothing) */ ^~ objloc.c: In function 'SeqLocMixAsnWrite': objloc.c:1738:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:1741:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'SeqLocEquivAsnWrite': objloc.c:1805:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:1808:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'SeqLocSetAsnWrite': objloc.c:1873:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp2 == NULL) ^~ objloc.c:1876:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (anp == NULL) { AsnNullValueMsg(aip, set); goto erret; } ^~ objloc.c: In function 'SeqLocSetAsnRead': objloc.c:1940:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (AsnReadVal(aip, atp, &av) <= 0) /* read END_STRUCT */ ^~ objloc.c:1942:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (first == NULL) ^~ objloc.c: In function 'SeqIntAsnWrite': objloc.c:2022:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:2025:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (sip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'SeqIntAsnRead': objloc.c:2095:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:2098:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' sip = SeqIntNew(); ^~~ objloc.c:2099:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (sip == NULL) ^~ objloc.c:2102:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ ^~ objloc.c: In function 'PackSeqIntAsnWrite': objloc.c:2179:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:2181:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' oldsip = sip; ^~~~~~ objloc.c:2185:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnOpenStruct(aip, atp, (Pointer)oldsip)) ^~ objloc.c:2187:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' for ( ;sip != NULL; sip = sip->next) ^~~ objloc.c: In function 'SeqPntAsnWrite': objloc.c:2309:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:2312:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (spp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'SeqPntAsnRead': objloc.c:2374:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:2377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' spp = SeqPntNew(); ^~~ objloc.c:2378:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (spp == NULL) ^~ objloc.c:2381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ ^~ objloc.c: In function 'PackSeqPntAsnWrite': objloc.c:2479:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:2482:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (pspp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'PackSeqPntAsnRead': objloc.c:2553:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:2556:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' pspp = PackSeqPntNew(); ^~~~ objloc.c:2557:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (pspp == NULL) ^~ objloc.c:2560:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ ^~ objloc.c: In function 'SeqBondAsnWrite': objloc.c:2724:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:2727:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objloc.c: In function 'SeqBondAsnRead': objloc.c:2776:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objloc.c:2779:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' sbp = SeqBondNew(); ^~~ objloc.c:2780:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (sbp == NULL) ^~ objloc.c:2783:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, oldtype, &av) <= 0) /* read the START_STRUCT */ ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmedli.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmedli.h:80, from objmedli.c:104: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objmedli.c: In function 'MedlineMeshAsnRead': objmedli.c:248:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objmedli.c:251:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' mmp = MedlineMeshNew(); ^~~ objmedli.c: In function 'DocRefFree': objmedli.c:1190:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (drp == NULL) ^~ objmedli.c:1193:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return (DocRefPtr)MemFree(drp); ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpub.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objpub.h:70, from objpub.c:125: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objpub.c: In function 'PubSetAsnRead': objpub.c:831:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (AsnReadVal(aip, settype, &av) <= 0) /* read START_STRUCT */ ^~ objpub.c:834:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (settype == PUB_SET_pub) ^~ objpub.c:901:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (AsnReadVal(aip, settype, &av) <= 0) /* read END_STRUCT for SET OF */ ^~ objpub.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (anp == NULL) ^~ objpub.c: In function 'PubLabelUnique': objpub.c:1360:17: warning: unused variable 'pmid' [-Wunused-variable] Int4 muid = 0, pmid = 0; ^~~~ objpub.c:1360:7: warning: unused variable 'muid' [-Wunused-variable] Int4 muid = 0, pmid = 0; ^~~~ objpub.c: In function 'PubSetAsnRead': objpub.c:876:16: warning: 'func' may be used uninitialized in this function [-Wmaybe-uninitialized] pnt = (* func)(aip, atp); ~^~~~~~~~~~~~~~~~~ objpub.c:887:25: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] cit->choice = choice; ~~~~~~~~~~~~^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objres.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from objres.c:84: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objscoremat.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objscoremat.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objscoremat.c: In function 'PssmAsnRead': objscoremat.c:93:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objscoremat.c: In function 'PssmIntermediateDataAsnRead': objscoremat.c:339:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objscoremat.c: In function 'PssmFinalDataAsnRead': objscoremat.c:548:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objscoremat.c: In function 'PssmParametersAsnRead': objscoremat.c:766:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objscoremat.c: In function 'PssmWithParametersAsnRead': objscoremat.c:946:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objscoremat.c: In function 'BlockPropertyAsnRead': objscoremat.c:1113:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objscoremat.c: In function 'CoreBlockAsnRead': objscoremat.c:1289:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objscoremat.c: In function 'LoopConstraintAsnRead': objscoremat.c:1480:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objscoremat.c: In function 'CoreDefAsnRead': objscoremat.c:1646:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objscoremat.c: In function 'FormatRpsDbParametersAsnRead': objscoremat.c:1817:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objseq.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from objseq.c:56: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objseq.c: In function 'LinkageEvidenceAsnRead': objseq.c:1609:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objseq.c: In function 'SeqGapAsnRead': objseq.c:1764:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objseq.c: In function 'SeqDescrAsnWriteExtra': objseq.c:2035:48: warning: variable 'had_anp' set but not used [-Wunused-but-set-variable] Boolean retval = FALSE, had_extra = FALSE, had_anp = FALSE; ^~~~~~~ objseq.c: In function 'AnnotIdAsnWrite': objseq.c:4841:9: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ objseq.c:4843:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' break; ^~~~~ objseq.c:4849:9: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ objseq.c:4851:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' break; ^~~~~ objseq.c: In function 'AnnotDescAsnWrite': objseq.c:5226:9: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ objseq.c:5228:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' break; ^~~~~ objseq.c: In function 'BioseqAsnRead': objseq.c:976:27: warning: 'osp' may be used uninitialized in this function [-Wmaybe-uninitialized] osp->found_it = TRUE; s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objblock.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objblock.h:70, from objblock.c:74: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objblock.c: In function 'EMBLBlockFree': objblock.c:900:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ebp == NULL) ^~ objblock.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' DateFree(ebp->creation_date); ^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcode.c objcode.c:48:51: warning: "/*" within comment [-Wcomment] * environment variables to allow reading from data/*.val, replaced tabs in source code with spaces In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objcode.h:64, from objcode.c:105: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsset.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from objsset.c:54: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objsset.c: In function 'BioseqSetFree': objsset.c:363:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (bsp == NULL) ^~ objsset.c:366:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (bsp->idx.parentptr == NULL || bsp->idx.parenttype == OBJ_SEQSUB) { ^~ objsset.c: In function 'SeqEntryFree': objsset.c:878:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (sep->choice == 2) ^~ objsset.c:881:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return (SeqEntryPtr)MemFree(sep); ^~~~~~ objsset.c: In function 'SeqEntryFreeComponents': objsset.c:898:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (sep->choice == 2) ^~ objsset.c:901:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' return sep; ^~~~~~ objsset.c: In function 'SeqEntryAsnGet': objsset.c:1075:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (retcode == 1) /* just after a Bioseq */ ^~ objsset.c:1077:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' av.ptrvalue = (Pointer) osp; ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsub.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asnsubmt.h:9, from objsub.c:84: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objsub.c: In function 'SubmitAsnLoad': objsub.c:341:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (loaded) ^~ objsub.c:344:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (! SeqSetAsnLoad ()) ^~ objsub.c:347:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (AsnLoad()) ^~ objsub.c:350:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ObjMgrTypeLoad(OBJ_SEQSUB, "Seq-submit", seqsubtypename, "Sequence Data Submission", ^~~~~~~~~~~~~~ objsub.c: In function 'SeqSubmitAsnWrite': objsub.c:455:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objsub.c:458:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objsub.c:462:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnOpenStruct(aip, atp, (Pointer)ssp)) ^~ objsub.c:465:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (! SubmitBlockAsnWrite(ssp->sub, aip, SEQ_SUBMIT_sub)) goto erret; ^~ objsub.c: In function 'SeqSubmitAsnRead': objsub.c:539:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objsub.c:542:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ssp = SeqSubmitNew(); ^~~ objsub.c:543:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ssp == NULL) ^~ objsub.c:546:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ ^~ objsub.c: In function 'SubmitBlockAsnWrite': objsub.c:682:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objsub.c:685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objsub.c:689:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnOpenStruct(aip, atp, (Pointer)sbp)) ^~ objsub.c:692:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (! ContactInfoAsnWrite(sbp->contact, aip, SUBMIT_BLOCK_contact)) ^~ objsub.c: In function 'SubmitBlockAsnRead': objsub.c:770:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objsub.c:773:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' oldatp = atp; ^~~~~~ objsub.c:775:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (sbp == NULL) ^~ objsub.c:778:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ ^~ objsub.c: In function 'ContactInfoAsnWrite': objsub.c:942:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objsub.c:945:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (cip == NULL) { AsnNullValueMsg(aip, atp); goto erret; } ^~ objsub.c:949:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! AsnOpenStruct(aip, atp, (Pointer)cip)) ^~ objsub.c:952:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (cip->name != NULL) ^~ objsub.c: In function 'ContactInfoAsnRead': objsub.c:1068:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atp == NULL) ^~ objsub.c:1070:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' oldatp = atp; ^~~~~~ objsub.c:1073:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (cip == NULL) ^~ objsub.c:1076:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (AsnReadVal(aip, atp, &av) <= 0) /* read the start struct */ ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objprt.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objprt.h:67, from objprt.c:81: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objprt.c: In function 'PrintFormBooleanAsnRead': objprt.c:892:6: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized] ptr=PrintFormBooleanFree(ptr); ^~~~~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function 'PrintFormEnumAsnRead': objprt.c:1010:6: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized] ptr=PrintFormEnumFree(ptr); ^~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function 'PrintFormTextAsnRead': objprt.c:1119:6: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized] ptr=PrintFormTextFree(ptr); ^~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function 'PrintFormAsnRead': objprt.c:600:8: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized] vnp = PrintFormFree(vnp); ^~~~~~~~~~~~~~~~~~ objprt.c: In function 'PrintFormatAsnRead': objprt.c:435:6: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized] ptr=PrintFormatFree(ptr); ^~~~~~~~~~~~~~~~~~~~ objprt.c: In function 'PrintTemplateAsnRead': objprt.c:250:6: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized] ptr=PrintTemplateFree(ptr); ^~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function 'PrintFormBlockAsnRead': objprt.c:767:6: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized] ptr=PrintFormBlockFree(ptr); ^~~~~~~~~~~~~~~~~~~~~~~ objprt.c: In function 'UserFormatAsnRead': objprt.c:1231:6: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized] ptr=UserFormatFree(ptr); ^~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfdef.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objfeat.h:48, from ../include/objfdef.h:48, from objfdef.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalignloc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objalignloc.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objalignloc.c: In function 'AlignLocSetAsnRead': objalignloc.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalignloc.c: In function 'Loc_locFree': objalignloc.c:196:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objalignloc.c: In function 'AlignLocAsnRead': objalignloc.c:233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalignloc.c:232:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objalignloc.c: In function 'Loc_locAsnRead': objalignloc.c:313:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objalignloc.c: In function 'AlignIdFree': objalignloc.c:527:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:559:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objalignloc.c: In function 'AlignBoxAsnRead': objalignloc.c:750:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalignloc.c:749:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objalignloc.c: In function 'AlignRowsAsnRead': objalignloc.c:932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalignloc.c:931:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objalignloc.c: In function 'AlignColumnsAsnRead': objalignloc.c:1096:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objalignloc.c:1095:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objalignloc.c: In function 'AlignIdAsnRead': objalignloc.c:615:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objalignloc.c: In function 'AlignLocAsnRead': objalignloc.c:370:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objalignloc.c:312:10: note: 'choice' was declared here Uint1 choice; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtable.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtable.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objtable.c: In function 'SeqTableColumnInfoAsnRead': objtable.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtable.c:86:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objtable.c: In function 'SeqTableColumnAsnRead': objtable.c:269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtable.c:268:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objtable.c: In function 'SeqTableAsnRead': objtable.c:474:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtable.c: In function 'CommonStringTableAsnRead': objtable.c:657:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtable.c: In function 'CommonBytesTableAsnRead': objtable.c:819:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtable.c: In function 'SeqTableSingleDataFree': objtable.c:1225:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1269:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objtable.c: In function 'SeqTableMultiDataAsnRead': objtable.c:1111:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objtable.c: In function 'SeqTableSingleDataAsnRead': objtable.c:1354:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objtable.c: In function 'SeqTableSparseIndexAsnRead': objtable.c:1559:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpubme.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objpubme.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objpubme.c: In function 'PubmedEntryAsnRead': objpubme.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objpubme.c: In function 'PubmedUrlAsnRead': objpubme.c:288:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objpubme.c:287:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmdrs.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmdrs.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objmdrs.c: In function 'MedlarsEntryAsnRead': objmdrs.c:85:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmdrs.c: In function 'MedlarsRecordAsnRead': objmdrs.c:259:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmdrs.c:258:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objproj.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objproj.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objproj.c: In function 'ProjectAsnRead': objproj.c:116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objproj.c:115:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objproj.c: In function 'ProjectDescrAsnRead': objproj.c:720:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objproj.c: In function 'ProjdescFree': objproj.c:857:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objproj.c: In function 'ProjdescAsnRead': objproj.c:898:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: objproj.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/mmdbapi.h:92, from ../include/mapproj.h:45, from objproj.c:5: ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ objproj.c: In function 'ProjdescAsnRead': objproj.c:958:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgbseq.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objgbseq.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objgbseq.c: In function 'GBSetAsnRead': objgbseq.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c:66:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objgbseq.c: In function 'GBSeqAsnRead': objgbseq.c:235:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c: In function 'GBReferenceAsnRead': objgbseq.c:742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c: In function 'GBCommentAsnRead': objgbseq.c:983:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c: In function 'GBStrucCommentAsnRead': objgbseq.c:1150:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c: In function 'GBFeatureAsnRead': objgbseq.c:1321:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c: In function 'GBFeatureSetAsnRead': objgbseq.c:1548:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c: In function 'GBAltSeqDataAsnRead': objgbseq.c:1715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c: In function 'GBXrefAsnRead': objgbseq.c:1882:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c:1881:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objgbseq.c: In function 'GBStrucCommentItemAsnRead': objgbseq.c:2053:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c:2052:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objgbseq.c: In function 'GBIntervalAsnRead': objgbseq.c:2233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c:2232:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objgbseq.c: In function 'GBQualifierAsnRead': objgbseq.c:2447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c:2446:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objgbseq.c: In function 'GBAltSeqItemAsnRead': objgbseq.c:2622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objgbseq.c:2621:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtseq.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtseq.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objtseq.c: In function 'TSeqAsnRead': objtseq.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtseq.c: In function 'TSeqSetAsnRead': objtseq.c:325:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtseq.c: In function 'BioseqToTSeq': objtseq.c:452:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] Uint1 seqcode; ^~~~~~~ objtseq.c: In function 'BioseqToMiniTSeq': objtseq.c:564:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable] Uint1 seqcode; ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objinsdseq.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objinsdseq.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objinsdseq.c: In function 'INSDSetAsnRead': objinsdseq.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c:66:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objinsdseq.c: In function 'INSDSeqAsnRead': objinsdseq.c:235:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c: In function 'INSDReferenceAsnRead': objinsdseq.c:742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c: In function 'INSDCommentAsnRead': objinsdseq.c:983:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c: In function 'INSDStrucCommentAsnRead': objinsdseq.c:1150:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c: In function 'INSDFeatureAsnRead': objinsdseq.c:1321:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c: In function 'INSDFeatureSetAsnRead': objinsdseq.c:1548:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c: In function 'INSDAltSeqDataAsnRead': objinsdseq.c:1715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c: In function 'INSDXrefAsnRead': objinsdseq.c:1882:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c:1881:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objinsdseq.c: In function 'INSDStrucCommentItemAsnRead': objinsdseq.c:2053:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c:2052:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objinsdseq.c: In function 'INSDIntervalAsnRead': objinsdseq.c:2233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c:2232:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objinsdseq.c: In function 'INSDQualifierAsnRead': objinsdseq.c:2447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c:2446:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objinsdseq.c: In function 'INSDAltSeqItemAsnRead': objinsdseq.c:2622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objinsdseq.c:2621:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmacro.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmacro.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objmacro.c: In function 'AECRActionAsnRead': objmacro.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:86:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ParseActionAsnRead': objmacro.c:272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:271:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MacroActionListAsnRead': objmacro.c:478:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:475:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'SuspectRuleSetAsnRead': objmacro.c:595:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:592:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'WordSubstitutionAsnRead': objmacro.c:731:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c: In function 'WordSubstitutionSetAsnRead': objmacro.c:899:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:896:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'StringConstraintAsnRead': objmacro.c:1045:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:1044:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'StringConstraintSetAsnRead': objmacro.c:1307:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:1304:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'LocationPosConstraintFree': objmacro.c:1403:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1432:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'LocationConstraintAsnRead': objmacro.c:1633:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:1632:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FeatQualLegalValAsnRead': objmacro.c:1849:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:1848:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FeatQualLegalValChoiceFree': objmacro.c:1979:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'FeatQualLegalValChoiceAsnRead': objmacro.c:2011:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FeatQualLegalSetAsnRead': objmacro.c:2165:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:2162:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'FeatQualChoiceFree': objmacro.c:2261:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'FeatQualChoiceAsnRead': objmacro.c:2293:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FeatureFieldAsnRead': objmacro.c:2474:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:2473:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FeatureFieldLegalAsnRead': objmacro.c:2641:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:2640:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FeatureFieldPairAsnRead': objmacro.c:2807:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:2806:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RnaFeatTypeFree': objmacro.c:2950:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:2982:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RnaQualAsnRead': objmacro.c:3232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:3231:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RnaQualPairAsnRead': objmacro.c:3400:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:3399:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SourceQualPairAsnRead': objmacro.c:3576:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:3575:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SourceQualChoiceFree': objmacro.c:3704:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3733:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SourceQualTextValAsnRead': objmacro.c:3950:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:3949:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SourceQualValChoiceFree': objmacro.c:4080:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4112:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SourceQualValSetAsnRead': objmacro.c:4310:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:4307:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'CDSGeneProtFieldPairAsnRead': objmacro.c:4442:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:4441:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoFieldFree': objmacro.c:4570:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4599:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoMoleculePairAsnRead': objmacro.c:4826:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:4825:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoTechniquePairAsnRead': objmacro.c:4990:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:4989:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoCompletednessPairAsnRead': objmacro.c:5154:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:5153:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoMolClassPairAsnRead': objmacro.c:5318:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:5317:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoTopologyPairAsnRead': objmacro.c:5482:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:5481:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoStrandPairAsnRead': objmacro.c:5646:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:5645:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoFieldPairFree': objmacro.c:5774:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5821:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoFieldListAsnRead': objmacro.c:6015:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:6012:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'MolinfoFieldConstraintAsnRead': objmacro.c:6149:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:6148:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'StructuredCommentFieldFree': objmacro.c:6280:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6312:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'StructuredCommentFieldPairAsnRead': objmacro.c:6508:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:6507:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'DBLinkFieldPairAsnRead': objmacro.c:6678:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:6677:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'PubFieldConstraintAsnRead': objmacro.c:6843:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:6842:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'PubFieldSpecialConstraintTypeFree': objmacro.c:6974:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:7003:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'PubFieldSpecialConstraintAsnRead': objmacro.c:7220:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:7219:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'PublicationConstraintAsnRead': objmacro.c:7389:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:7388:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SourceConstraintAsnRead': objmacro.c:7571:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:7570:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'CDSGeneProtPseudoConstraintAsnRead': objmacro.c:7763:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:7762:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'CDSGeneProtConstraintFieldFree': objmacro.c:7891:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'CDSGeneProtConstraintFieldAsnRead': objmacro.c:7920:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'CDSGeneProtQualConstraintAsnRead': objmacro.c:8095:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:8094:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FieldConstraintAsnRead': objmacro.c:8279:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:8278:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FieldTypeFree': objmacro.c:8413:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8457:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SequenceConstraintMolTypeConstraintFree': objmacro.c:8666:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8695:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'QuantityConstraintFree': objmacro.c:8875:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8904:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SequenceConstraintAsnRead': objmacro.c:9104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:9103:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'TranslationConstraintAsnRead': objmacro.c:9332:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:9331:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ConstraintChoiceFree': objmacro.c:9487:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9549:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ConstraintChoiceSetAsnRead': objmacro.c:9783:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:9780:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'TextMarkerFree': objmacro.c:9879:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9911:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'TextPortionAsnRead': objmacro.c:10109:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:10108:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FieldEditAsnRead': objmacro.c:10328:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:10327:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FieldPairTypeFree': objmacro.c:10478:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10528:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ApplyActionAsnRead': objmacro.c:10747:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:10746:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'EditActionAsnRead': objmacro.c:10927:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:10926:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'TextTransformFree': objmacro.c:11061:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'TextTransformAsnRead': objmacro.c:11096:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'TextTransformSetAsnRead': objmacro.c:11269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:11266:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'ConvertActionAsnRead': objmacro.c:11405:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:11404:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'CopyActionAsnRead': objmacro.c:11600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:11599:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SwapActionAsnRead': objmacro.c:11768:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:11767:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'AECRParseActionAsnRead': objmacro.c:11932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:11931:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RemoveActionAsnRead': objmacro.c:12151:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:12150:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RemoveOutsideActionAsnRead': objmacro.c:12312:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:12311:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ActionChoiceFree': objmacro.c:12455:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12508:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ParseSrcOrgChoiceFree': objmacro.c:12697:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12726:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ParseSrcOrgAsnRead': objmacro.c:12911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:12910:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ParseSrcGeneralIdFree': objmacro.c:13042:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:13074:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ParseSrcFree': objmacro.c:13232:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:13270:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ParseDstOrgAsnRead': objmacro.c:13526:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:13525:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ParseDestFree': objmacro.c:13657:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13695:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'LocationIntervalAsnRead': objmacro.c:13905:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:13904:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'LocationChoiceFree': objmacro.c:14033:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:14065:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SequenceListAsnRead': objmacro.c:14241:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:14238:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objmacro.c: In function 'SequenceListChoiceFree': objmacro.c:14337:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'SequenceListChoiceAsnRead': objmacro.c:14369:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ApplyFeatureActionAsnRead': objmacro.c:14560:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:14559:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RemoveFeatureActionAsnRead': objmacro.c:14827:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:14826:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ConvertFromCDSOptionsAsnRead': objmacro.c:14994:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:14993:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ConvertFeatureSrcOptionsFree': objmacro.c:15131:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ConvertFeatureSrcOptionsAsnRead': objmacro.c:15163:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RegionTypeAsnRead': objmacro.c:15332:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:15331:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ConvertFeatureDstOptionsFree': objmacro.c:15451:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15486:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ConvertFeatureActionAsnRead': objmacro.c:15702:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:15701:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'EditLocationStrandAsnRead': objmacro.c:15911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:15910:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'Partial5SetActionAsnRead': objmacro.c:16075:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:16074:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'Partial3SetActionAsnRead': objmacro.c:16239:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:16238:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'PartialBothSetActionAsnRead': objmacro.c:16403:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:16402:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ExtendToFeatureAsnRead': objmacro.c:16568:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:16567:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'LocationEditTypeFree': objmacro.c:16708:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16755:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'EditFeatureLocationActionAsnRead': objmacro.c:17032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:17031:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MolinfoBlockAsnRead': objmacro.c:17232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:17231:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RemoveDescriptorActionAsnRead': objmacro.c:17415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:17414:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'AutodefActionAsnRead': objmacro.c:17584:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c: In function 'FixPubCapsActionAsnRead': objmacro.c:17758:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:17757:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SortFieldsActionAsnRead': objmacro.c:17963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:17962:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FixAuthorCapsAsnRead': objmacro.c:18142:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:18141:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FixCapsActionFree': objmacro.c:18261:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:18296:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FixFormatActionFree': objmacro.c:18470:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:18499:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RemoveDuplicateFeatureActionAsnRead': objmacro.c:18705:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:18704:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'GeneXrefTypeAsnRead': objmacro.c:18899:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:18898:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'XrefTypeFree': objmacro.c:19036:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'XrefTypeAsnRead': objmacro.c:19068:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RemoveXrefsActionAsnRead': objmacro.c:19239:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:19238:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MakeGeneXrefActionAsnRead': objmacro.c:19410:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:19409:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'AuthorFixActionAsnRead': objmacro.c:19578:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:19577:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'UpdateSequencesActionAsnRead': objmacro.c:19747:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:19746:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'CreateTSAIdsSrcFree': objmacro.c:19877:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'CreateTSAIdsSrcAsnRead': objmacro.c:19909:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'CreateTSAIdsActionAsnRead': objmacro.c:20092:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:20091:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'AutofixActionAsnRead': objmacro.c:20274:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:20273:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'FixSetsActionFree': objmacro.c:20395:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'FixSetsActionAsnRead': objmacro.c:20424:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'TableMatchTypeFree': objmacro.c:20582:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'TableMatchTypeAsnRead': objmacro.c:20614:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'TableMatchAsnRead': objmacro.c:20873:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:20872:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ApplyTableExtraDataFree': objmacro.c:21004:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ApplyTableExtraDataAsnRead': objmacro.c:21033:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ApplyTableActionAsnRead': objmacro.c:21210:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:21209:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'AddFileActionAsnRead': objmacro.c:21411:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:21410:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'AddDescriptorListActionAsnRead': objmacro.c:21582:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:21581:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RemoveSequencesActionAsnRead': objmacro.c:21753:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:21752:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'UpdateReplacedEcNumbersActionAsnRead': objmacro.c:21911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:21910:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'RetranslateCdsActionAsnRead': objmacro.c:22084:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:22083:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'AdjustFeaturesForGapsActionAsnRead': objmacro.c:22239:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:22238:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'MacroActionChoiceFree': objmacro.c:22412:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:22522:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SearchFuncFree': objmacro.c:23116:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:23154:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SimpleReplaceAsnRead': objmacro.c:23425:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:23424:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ReplaceFuncFree': objmacro.c:23564:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmacro.c: In function 'ReplaceFuncAsnRead': objmacro.c:23599:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'ReplaceRuleAsnRead': objmacro.c:23781:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:23780:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SuspectRuleAsnRead': objmacro.c:23955:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmacro.c:23954:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmacro.c: In function 'SourceQualChoiceAsnRead': objmacro.c:3806:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'SourceQualValChoiceAsnRead': objmacro.c:4182:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'MolinfoFieldAsnRead': objmacro.c:4679:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'MolinfoFieldPairAsnRead': objmacro.c:5883:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'StructuredCommentFieldAsnRead': objmacro.c:6371:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'FieldTypeAsnRead': objmacro.c:8543:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'ConstraintChoiceAsnRead': objmacro.c:9631:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'TextTransformAsnRead': objmacro.c:11149:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'ParseSrcGeneralIdAsnRead': objmacro.c:13133:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'FixCapsActionAsnRead': objmacro.c:18363:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'FixFormatActionAsnRead': objmacro.c:18565:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'FixSetsActionAsnRead': objmacro.c:20483:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'MacroActionChoiceAsnRead': objmacro.c:22829:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'LocationPosConstraintAsnRead': objmacro.c:1491:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'FeatQualChoiceAsnRead': objmacro.c:2342:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'RnaFeatTypeAsnRead': objmacro.c:3076:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead': objmacro.c:7076:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead': objmacro.c:8768:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'QuantityConstraintAsnRead': objmacro.c:8963:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'TextMarkerAsnRead': objmacro.c:9970:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'FieldPairTypeAsnRead': objmacro.c:10594:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'ActionChoiceAsnRead': objmacro.c:12578:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'ParseSrcOrgChoiceAsnRead': objmacro.c:12778:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'ParseSrcAsnRead': objmacro.c:13365:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'ParseDestAsnRead': objmacro.c:13762:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'LocationChoiceAsnRead': objmacro.c:14121:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'SequenceListChoiceAsnRead': objmacro.c:14418:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead': objmacro.c:15556:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'LocationEditTypeAsnRead': objmacro.c:16859:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'CreateTSAIdsSrcAsnRead': objmacro.c:19958:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'TableMatchTypeAsnRead': objmacro.c:20712:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'SearchFuncAsnRead': objmacro.c:23259:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmacro.c: In function 'ReplaceFuncAsnRead': objmacro.c:23648:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objent2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objent2.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objent2.c: In function 'Entrez2IdListAsnRead': objent2.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:86:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2BooleanExpAsnRead': objent2.c:277:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c: In function 'Entrez2BooleanElementFree': objent2.c:416:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:457:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2LimitsAsnRead': objent2.c:666:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:665:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2BooleanTermAsnRead': objent2.c:844:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:843:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2RequestAsnRead': objent2.c:1041:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:1040:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'E2RequestFree': objent2.c:1203:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objent2.c: In function 'E2RequestAsnRead': objent2.c:1256:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2EvalBooleanAsnRead': objent2.c:1493:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:1492:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2TermQueryAsnRead': objent2.c:1670:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:1669:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2TermPosAsnRead': objent2.c:1849:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:1848:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2HierQueryAsnRead': objent2.c:2036:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:2035:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2GetLinksAsnRead': objent2.c:2224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:2223:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2IdAsnRead': objent2.c:2419:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:2418:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2DtFilterAsnRead': objent2.c:2584:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:2583:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2ReplyAsnRead': objent2.c:2762:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:2761:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'E2ReplyFree': objent2.c:2935:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objent2.c: In function 'E2ReplyAsnRead': objent2.c:2991:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2InfoAsnRead': objent2.c:3237:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c: In function 'Entrez2BooleanReplyAsnRead': objent2.c:3409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:3408:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2DocsumListAsnRead': objent2.c:3587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c: In function 'Entrez2TermListAsnRead': objent2.c:3749:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c: In function 'Entrez2HierNodeAsnRead': objent2.c:3922:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c: In function 'Entrez2LinkSetAsnRead': objent2.c:4122:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:4121:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2LinkCountListAsnRead': objent2.c:4299:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c: In function 'Entrez2DbInfoAsnRead': objent2.c:4466:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c: In function 'Entrez2FieldInfoAsnRead': objent2.c:4706:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:4705:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2LinkInfoAsnRead': objent2.c:4950:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:4949:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2DocsumFieldInfoAsnRead': objent2.c:5149:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:5148:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2DocsumAsnRead': objent2.c:5325:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c: In function 'Entrez2DocsumDataAsnRead': objent2.c:5488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:5487:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2TermAsnRead': objent2.c:5655:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:5654:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2LinkCountAsnRead': objent2.c:5838:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objent2.c:5837:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objent2.c: In function 'Entrez2BooleanElementAsnRead': objent2.c:524:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objent2.c: In function 'E2RequestAsnRead': objent2.c:1333:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objent2.c: In function 'E2ReplyAsnRead': objent2.c:3075:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ent2api.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ent2api.h:45, from ent2api.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pmfapi.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from pmfapi.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ pmfapi.c:2813:24: warning: 'SortByInt4' defined but not used [-Wunused-function] static int LIBCALLBACK SortByInt4 (VoidPtr vp1, VoidPtr vp2) ^~~~~~~~~~ pmfapi.c: In function 'ConfirmAccStrInSep': pmfapi.c:1314:3: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqIdFree (tmp); ^~~~~~~~~~~~~~~ pmfapi.c: In function 'PubMedSynchronousQuery': pmfapi.c:1224:58: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("PubMedWaitForReply %ld\n", (long) (stoptime - starttime)); ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function 'PubSeqSynchronousQueryEx': pmfapi.c:1479:58: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime)); ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function 'PubSeqSynchronousQueryTI': pmfapi.c:1663:58: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime)); ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function 'PubSeqSynchronousQuerySRA': pmfapi.c:1744:58: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime)); ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function 'GiRevHistSynchronousQuery': pmfapi.c:1817:61: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("GiRevHistWaitForReply %ld\n", (long) (stoptime - starttime)); ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function 'GiAccVerSynchronousQuery': pmfapi.c:1869:60: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("GiAccVerWaitForReply %ld\n", (long) (stoptime - starttime)); ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function 'AccnRevHistSynchronousQuery': pmfapi.c:1920:63: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("AccnRevHistWaitForReply %ld\n", (long) (stoptime - starttime)); ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function 'GiSeqIdSetSynchronousQuery': pmfapi.c:1971:62: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("GiSeqIdSetWaitForReply %ld\n", (long) (stoptime - starttime)); ~~~~~~~~~~^~~~~~~~~~~~ pmfapi.c: In function 'AccnListSynchronousQuery': pmfapi.c:2021:60: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("AccnListWaitForReply %ld\n", (long) (stoptime - starttime)); ~~~~~~~~~~^~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtax3.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objtax3.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objtax3.c: In function 'Taxon3RequestAsnRead': objtax3.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtax3.c: In function 'T3RequestFree': objtax3.c:200:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objtax3.c: In function 'SequenceOfIntAsnRead': objtax3.c:418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtax3.c: In function 'Taxon3ReplyAsnRead': objtax3.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtax3.c: In function 'T3ReplyFree': objtax3.c:661:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objtax3.c: In function 'T3ErrorAsnRead': objtax3.c:872:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtax3.c: In function 'T3DataAsnRead': objtax3.c:1072:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtax3.c: In function 'Value_valueFree': objtax3.c:1253:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1283:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objtax3.c: In function 'T3RefreshFlagsAsnRead': objtax3.c:1608:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ In file included from ../include/strimprt.h:72, from objtax3.c:5: objtax3.c: At top level: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from objtax3.c:5: ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from objtax3.c:5: ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from objtax3.c:5: ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ objtax3.c: In function 'T3RequestAsnRead': objtax3.c:297:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objtax3.c: In function 'T3ReplyAsnRead': objtax3.c:741:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objtax3.c: In function 'T3StatusFlagsAsnRead': objtax3.c:1421:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objtax3.c:1362:10: note: 'choice' was declared here Uint1 choice; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tax3api.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from tax3api.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ tax3api.c: In function 'Tax3SynchronousQuery': tax3api.c:189:27: warning: variable 't3' set but not used [-Wunused-but-set-variable] time_t t1, t2, t3; ^~ tax3api.c: In function 'CheckSuggestedFixes': tax3api.c:1030:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] T3ErrorPtr tep; ^~~ tax3api.c: In function 'TryNewSuggestedFixes': tax3api.c:1142:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable] T3ErrorPtr tep; ^~~ tax3api.c: In function 'RemoveSpeciesSpecific': tax3api.c:1398:13: warning: unused variable 'cp' [-Wunused-variable] CharPtr cp; ^~ At top level: tax3api.c:3399:13: warning: 'AddBioSourcesToChecklist' defined but not used [-Wunused-function] static void AddBioSourcesToChecklist (ValNodePtr biop_list, ValNodePtr check_list) ^~~~~~~~~~~~~~~~~~~~~~~~ tax3api.c:2699:16: warning: 'MatchesGenBankSynonym' defined but not used [-Wunused-function] static Boolean MatchesGenBankSynonym (CharPtr txt, OrgRefPtr response_org) ^~~~~~~~~~~~~~~~~~~~~ tax3api.c:2682:16: warning: 'MatchesSynonym' defined but not used [-Wunused-function] static Boolean MatchesSynonym (CharPtr txt, OrgRefPtr response_org) ^~~~~~~~~~~~~~ tax3api.c:2273:16: warning: 'EndsWithSp' defined but not used [-Wunused-function] static Boolean EndsWithSp (CharPtr str) ^~~~~~~~~~ tax3api.c:990:19: warning: 'MakeTaxFixRequestList' defined but not used [-Wunused-function] static ValNodePtr MakeTaxFixRequestList (ValNodePtr biop_list) ^~~~~~~~~~~~~~~~~~~~~ tax3api.c:362:16: warning: 'HasMisspellingFlag' defined but not used [-Wunused-function] static Boolean HasMisspellingFlag (T3DataPtr t) ^~~~~~~~~~~~~~~~~~ tax3api.c:298:13: warning: 'SaveTaxon3Request' defined but not used [-Wunused-function] static void SaveTaxon3Request (Taxon3RequestPtr t3rp, CharPtr path) ^~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objegkludge.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objegkludge.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentgene.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objentgene.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objentgene.c: In function 'EntrezgeneAsnRead': objentgene.c:103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objentgene.c: In function 'EntrezgeneSetAsnRead': objentgene.c:412:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objentgene.c:409:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objentgene.c: In function 'GeneTrackAsnRead': objentgene.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objentgene.c: In function 'GeneCommentaryAsnRead': objentgene.c:768:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objentgene.c: In function 'Method_methodFree': objentgene.c:1073:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objentgene.c: In function 'MapsAsnRead': objentgene.c:1104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objentgene.c:1103:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objentgene.c: In function 'Method_methodAsnRead': objentgene.c:1184:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objentgene.c: In function 'GeneSourceAsnRead': objentgene.c:1426:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objentgene.c:1425:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objentgene.c: In function 'XtraTermsAsnRead': objentgene.c:1641:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objentgene.c:1640:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objentgene.c: In function 'OtherSourceAsnRead': objentgene.c:1812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objentgene.c:1811:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objentgene.c: In function 'MapsAsnRead': objentgene.c:1236:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objentgene.c:1183:10: note: 'choice' was declared here Uint1 choice; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmla2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmla2.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objmla2.c: In function 'Mla2RequestFree': objmla2.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable] Pointer pnt; ^~~ objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:96:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmla2.c: In function 'TitleMsg2AsnRead': objmla2.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmla2.c:446:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmla2.c: In function 'TitleMsgList2AsnRead': objmla2.c:613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmla2.c: In function 'Mla22RequestAsnRead': objmla2.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ objmla2.c: In function 'Mla2BackAsnRead': objmla2.c:904:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized] anp->choice = choice; ~~~~~~~~~~~~^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mla2api.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/mla2api.h:45, from mla2api.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF qblastapi.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from qblastapi.c:123: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ qblastapi.c: In function 'SecondQBlastCallback': qblastapi.c:262:15: warning: variable 'waiting' set but not used [-Wunused-but-set-variable] Boolean waiting = FALSE; ^~~~~~~ qblastapi.c: In function 'BLASTGetSeqAnnotByRIDEx': qblastapi.c:826:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] EIO_Status status; ^~~~~~ qblastapi.c: In function 'BLASTGetQueryBioseqByRIDEx': qblastapi.c:871:18: warning: variable 'status' set but not used [-Wunused-but-set-variable] EIO_Status status; ^~~~~~ qblastapi.c: In function 'QBlastCheckQueue': qblastapi.c:688:36: warning: '&FORMAT_OBJECT=Alignment&FOR...' directive writing 43 bytes into a region of size between 5 and 68 [-Wformat-overflow=] sprintf (str, "CMD=Get&RID=%s&FORMAT_OBJECT=Alignment&FORMAT_TYPE=ASN.1\n", curr->rid); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from qblastapi.c:123: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 56 and 119 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vecscnapi.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from vecscnapi.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmim.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objmim.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objmim.c: In function 'MimSetAsnRead': objmim.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c: In function 'MimDateAsnRead': objmim.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c:247:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmim.c: In function 'MimEntryAsnRead': objmim.c:448:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c: In function 'MimCitAsnRead': objmim.c:909:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c:908:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmim.c: In function 'MimTextAsnRead': objmim.c:1096:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c:1095:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmim.c: In function 'MimEditItemAsnRead': objmim.c:1276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c:1275:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmim.c: In function 'MimAllelicVariantAsnRead': objmim.c:1448:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c: In function 'MimIndexTermAsnRead': objmim.c:1640:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c: In function 'MimReferenceAsnRead': objmim.c:1819:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c: In function 'MimLinkAsnRead': objmim.c:2195:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c:2194:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmim.c: In function 'MimAuthorAsnRead': objmim.c:2369:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c:2368:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objmim.c: In function 'MimPageAsnRead': objmim.c:2535:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objmim.c:2534:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objvalid.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from objvalid.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objvalid.c: In function 'FieldRuleAsnRead': objvalid.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objvalid.c:87:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objvalid.c: In function 'FieldSetAsnRead': objvalid.c:259:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objvalid.c:256:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objvalid.c: In function 'DependentFieldRuleAsnRead': objvalid.c:396:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objvalid.c:395:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objvalid.c: In function 'DependentFieldSetAsnRead': objvalid.c:582:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objvalid.c:579:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objvalid.c: In function 'CommentRuleAsnRead': objvalid.c:721:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objvalid.c:720:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ objvalid.c: In function 'CommentSetAsnRead': objvalid.c:926:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objvalid.c:923:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ objvalid.c: In function 'PhraseListAsnRead': objvalid.c:1043:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objvalid.c:1040:12: warning: unused variable 'av' [-Wunused-variable] DataVal av; ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mimapi.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from mimapi.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddapi.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cddapi.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqport.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from seqport.c:54: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ seqport.c: In function 'productLoc_to_locationLoc': seqport.c:4260:13: warning: variable 'is_cdregion' set but not used [-Wunused-but-set-variable] Boolean is_cdregion = FALSE; ^~~~~~~~~~~ seqport.c: In function 'NaLocFromNaInterval': seqport.c:4590:8: warning: variable 'p_end_pos' set but not used [-Wunused-but-set-variable] Int4 p_end_pos; /*the end of the product sequence in the current loc*/ ^~~~~~~~~ seqport.c: In function 'dnaLoc_to_aaLoc': seqport.c:4706:18: warning: variable 'cds_right' set but not used [-Wunused-but-set-variable] Int4 cds_left, cds_right; ^~~~~~~~~ seqport.c:4706:8: warning: variable 'cds_left' set but not used [-Wunused-but-set-variable] Int4 cds_left, cds_right; ^~~~~~~~ seqport.c: In function 'DeltaRevComp': seqport.c:5388:21: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] DeltaSeqPtr dsp, dspnext; ^~~~~~~ seqport.c: In function 'SeqSearchEnterNucWord': seqport.c:6943:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] Int2 next, patLen, state; ^~~~~~ seqport.c: In function 'ProtSearchEnterProtWord': seqport.c:7817:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable] Int2 next, patLen, state; ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from seqport.c:62: seqport.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sequtil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from sequtil.c:53: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ sequtil.c: In function 'GetPointsForLeftAndRightOffsets': sequtil.c:7994:11: warning: variable 'first_strand' set but not used [-Wunused-but-set-variable] Uint1 first_strand, last_strand; ^~~~~~~~~~~~ sequtil.c: In function 'SeqPointWriteEx': sequtil.c:8532:15: warning: variable 'fuzzlen' set but not used [-Wunused-but-set-variable] Int4 fuzzlen, id_len; ^~~~~~~ sequtil.c: In function 'TaxNameFromCommon': sequtil.c:8687:42: warning: missing braces around initializer [-Wmissing-braces] static Nlm_TaxCommon taxcommon[40] = { ^ "Chinese hamsters", "Cricetulus sp." { ,"Syrian golden hamsters", "Mesocricetus auratus" }{ ,"Syrian hamsters", "Mesocricetus sp." }{ ,"barley", "Hordeum sp." }{ ,"carrots", "Daucus sp." }{ ,"cats", "Felis sp." }{ ,"cattles", "Bos sp." }{ ,"chickens", "Gallus sp." }{ ,"chimpanzees", "Pan sp." }{ ,"chimpanzes", "Pan sp." }{ ,"corn", "Zea sp." }{ ,"cucumber", "Cucumis sativus" }{ ,"dogs", "Canis sp." }{ ,"goats", "Capra sp." }{ ,"gorillas", "Gorilla sp." }{ ,"guinea pigs", "Cavia sp." }{ ,"hamsters", "Cricetidae gen. sp." }{ ,"horses", "Equus sp." }{ ,"humans", "Homo sapiens" }{ ,"maize", "Zea sp." }{ ,"mice", "Mus sp." }{ ,"mouse", "Mus sp." }{ ,"peas", "Pisum sp." }{ ,"potatoes", "Solanum sp." }{ ,"potato", "Solanum sp." }{ ,"quails", "Phasianidae gen. sp." }{ ,"rabbits", "Oryctolagus sp." }{ ,"rats", "Rattus sp." }{ ,"rices", "Oryza sp." }{ ,"sheeps", "Ovis sp." }{ ,"sorghums", "Sorghum sp." }{ ,"soybeans", "Glycine sp." }{ ,"spinach", "Spinacia sp." }{ ,"swine", "Sus sp." }{ ,"tobacco", "Nicotiania sp." }{ ,"tomatoes", "Lycopersicon sp." }{ ,"tomato", "Lycopersicon sp." }{ ,"turkeys", "Meleagris sp." }{ ,"wheat", "Triticum sp." }{ ,"zebrafish", "Brachydanio sp." }{ }; } sequtil.c: In function 'GetBestScoreAndEvalueFromScorePtr': sequtil.c:9510:48: warning: variable 'sum_set' set but not used [-Wunused-but-set-variable] Boolean score_set=FALSE, evalue_set=FALSE, sum_set=FALSE, bit_set=FALSE; ^~~~~~~ sequtil.c: In function 'SeqIdFromAccessionEx': sequtil.c:10110:38: warning: variable 'sip2' set but not used [-Wunused-but-set-variable] SeqIdPtr sip2; ^~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prtutil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objprt.h:67, from ../include/prtutil.h:69, from prtutil.c:81: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ prtutil.c: In function 'StdFormatPrint': prtutil.c:1422:10: warning: unused variable 'ptr' [-Wunused-variable] CharPtr ptr = NULL; ^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF simple.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/simple.h:63, from simple.c:68: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from simple.c:69: ../include/all.h:7293: warning: "RNA_QUAL" redefined #define RNA_QUAL &at[2254] ../include/all.h:5823: note: this is the location of the previous definition #define RNA_QUAL &at[1025] s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofasta.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/tofasta.h:47, from tofasta.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ tofasta.c: In function 'DoSpecialDefline': tofasta.c:1461:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] SeqFeatPtr gene = NULL; ^~~~ tofasta.c: In function 'FastaIdEx': tofasta.c:3100:15: warning: variable 'sip' set but not used [-Wunused-but-set-variable] SeqIdPtr sip; ^~~ tofasta.c: In function 'CreateDefLineExEx': tofasta.c:4991:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (vnp != NULL) ^~ tofasta.c:4993:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (title != NULL) { ^~ tofasta.c: In function 'x_SetSuffix': tofasta.c:8313:24: warning: variable 'buf2' set but not used [-Wunused-but-set-variable] Char buf1 [512], buf2 [256]; ^~~~ tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2838:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buffer+1, BuffSize, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tofasta.c:2863:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(buffer+i+1, FTSE_BUFF_CHUNK, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: tofasta.c:8058:17: warning: 'x_StringInList' defined but not used [-Wunused-function] static Boolean x_StringInList ( ^~~~~~~~~~~~~~ tofasta.c:3661:19: warning: 'GatherGenesForCDS' defined but not used [-Wunused-function] static ValNodePtr GatherGenesForCDS(SeqLocPtr slp) ^~~~~~~~~~~~~~~~~ tofasta.c:3627:19: warning: 'GatherSeqFeatProt' defined but not used [-Wunused-function] static SeqFeatPtr GatherSeqFeatProt(BioseqPtr bsp) ^~~~~~~~~~~~~~~~~ tofasta.c:3541:19: warning: 'GetCDSProtUnindexed' defined but not used [-Wunused-function] static SeqFeatPtr GetCDSProtUnindexed ( ^~~~~~~~~~~~~~~~~~~ tofasta.c:3378:19: warning: 'IndexedGatherDescrOnBioseq' defined but not used [-Wunused-function] static ValNodePtr IndexedGatherDescrOnBioseq (ItemInfoPtr iip, BioseqPtr bsp, Uint1 choice) ^~~~~~~~~~~~~~~~~~~~~~~~~~ tofasta.c:3283:16: warning: 'get_descr' defined but not used [-Wunused-function] static Boolean get_descr (GatherContextPtr gcp) ^~~~~~~~~ tofasta.c:3254:16: warning: 'get_descr_on_top' defined but not used [-Wunused-function] static Boolean get_descr_on_top (GatherContextPtr gcp) ^~~~~~~~~~~~~~~~ tofasta.c: In function 'FastaReadSequenceInternalEx': tofasta.c:2713:27: warning: 'mask_to' may be used uninitialized in this function [-Wmaybe-uninitialized] mask_sint->to = mask_to; ~~~~~~~~~~~~~~^~~~~~~~~ tofasta.c: In function 'FastaToSeqEntryInternalExEx': tofasta.c:2954:13: warning: 'fd' may be used uninitialized in this function [-Wmaybe-uninitialized] ungetc(ch, fd); ^~~~~~~~~~~~~~ tofasta.c:2866:29: warning: 'firstchar' may be used uninitialized in this function [-Wmaybe-uninitialized] for(i =0; (ch = *firstchar) != NULLB; firstchar++, i++) { ^~~~~~~~~~ tofasta.c: In function 'BioseqFastaStreamInternal': tofasta.c:1351:49: warning: '%s' directive writing up to 40 bytes into a region of size between 32 and 42 [-Wformat-overflow=] sprintf (spn, "oData.push({gi:%ld,acc:\"%s\"})", (long) sf.gi, acc); ^~ ~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/tofasta.h:47, from tofasta.c:44: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 26 and 76 bytes into a destination of size 64 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofile.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from tofile.c:78: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tomedlin.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmedli.h:80, from tomedlin.c:153: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valid.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from valid.c:54: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ valid.c: In function 'GetUserFieldValueString': valid.c:2212:21: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", ufp->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~ %ld valid.c: In function 'ValidateSeqIdCase': valid.c:3574:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] GatherContextPtr gcp; ^~~ valid.c: In function 'ValidateGenProdSet': valid.c:6046:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable] GeneRefPtr grp; ^~~ valid.c: In function 'CountAdjacentProc': valid.c:6730:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] GatherContextPtr gcp; ^~~ valid.c: In function 'CheckBioseqEndsForNAndGap': valid.c:7040:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (str [0] == 'n' || str [0] == 'N' && begin_n != NULL) { ^ valid.c:7061:56: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (str [len - 1] == 'n' || str [len - 1] == 'N' && end_n != NULL) { ^ valid.c: In function 'ValidateBioseqInst': valid.c:7341:19: warning: variable 'tech' set but not used [-Wunused-but-set-variable] Uint1 tech; ^~~~ valid.c:7278:19: warning: variable 'prot' set but not used [-Wunused-but-set-variable] SeqFeatPtr prot; ^~~~ valid.c: In function 'FixOrgModVoucher': valid.c:13882:22: warning: unused variable 'allowed_type' [-Wunused-variable] Uint1 type = 0, allowed_type = 0; ^~~~~~~~~~~~ valid.c: In function 'ValidateBioSource': valid.c:15514:19: warning: variable 'isMicrosporidia' set but not used [-Wunused-but-set-variable] Boolean isMicrosporidia = FALSE; ^~~~~~~~~~~~~~~ valid.c:15512:19: warning: variable 'isEukaryote' set but not used [-Wunused-but-set-variable] Boolean isEukaryote = FALSE; ^~~~~~~~~~~ valid.c:15503:19: warning: variable 'id' set but not used [-Wunused-but-set-variable] Int4 id; ^~ valid.c: In function 'ValidateDblink': valid.c:16786:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable] GatherContextPtr gcp; ^~~ valid.c: In function 'ValidateSeqDescrCommon': valid.c:16883:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] PubdescPtr pdp; ^~~ valid.c: In function 'GetFeatsInGaps': valid.c:18858:21: warning: variable 'realBases' set but not used [-Wunused-but-set-variable] Int4 realBases; ^~~~~~~~~ valid.c:18857:21: warning: variable 'plusses' set but not used [-Wunused-but-set-variable] Int4 plusses; ^~~~~~~ valid.c:18854:21: warning: variable 'Ns' set but not used [-Wunused-but-set-variable] Int4 Ns; ^~ valid.c:18851:21: warning: variable 'dashes' set but not used [-Wunused-but-set-variable] Int4 dashes; ^~~~~~ valid.c: In function 'ValidateBioseqContextIndexed': valid.c:20267:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (bvsp->is_mrna || cdscount == 1 && genecount < 2) { ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ valid.c:19476:65: warning: variable 'cdsmgene' set but not used [-Wunused-but-set-variable] SeqFeatPtr utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene; ^~~~~~~~ valid.c:19476:33: warning: variable 'cdspgene' set but not used [-Wunused-but-set-variable] SeqFeatPtr utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene; ^~~~~~~~ valid.c:19475:51: warning: variable 'utr5minus' set but not used [-Wunused-but-set-variable] SeqFeatPtr utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus; ^~~~~~~~~ valid.c:19475:41: warning: variable 'utr3plus' set but not used [-Wunused-but-set-variable] SeqFeatPtr utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus; ^~~~~~~~ valid.c:19442:41: warning: variable 'utr3gene' set but not used [-Wunused-but-set-variable] SeqFeatPtr cdsgene, utr5gene, utr3gene; ^~~~~~~~ valid.c: In function 'ReportBadWGSGap': valid.c:21153:18: warning: unused variable 'is_wgs' [-Wunused-variable] Boolean is_wgs = FALSE; ^~~~~~ valid.c: In function 'ValidateBarcodeIndexNumber': valid.c:21432:21: warning: variable 'bin_len' set but not used [-Wunused-but-set-variable] Int4 bin_len; ^~~~~~~ valid.c: In function 'ValidateRptUnit': valid.c:23411:32: warning: variable 'found' set but not used [-Wunused-but-set-variable] Boolean badchars, found, just_nuc_letters, multi_rpt_unit, in_range; ^~~~~ valid.c: In function 'CheckForCommonCDSProduct': valid.c:25628:19: warning: variable 'is_nw' set but not used [-Wunused-but-set-variable] Boolean is_nw = FALSE; ^~~~~ valid.c:25625:19: warning: variable 'is_nc' set but not used [-Wunused-but-set-variable] Boolean is_nc = FALSE; ^~~~~ valid.c: In function 'CheckForIllegalDbxref': valid.c:26017:16: warning: variable 'id' set but not used [-Wunused-but-set-variable] Int4 id; ^~ valid.c: In function 'ValidateAnticodon': valid.c:26781:53: warning: variable 'circular' set but not used [-Wunused-but-set-variable] ordered = TRUE, adjacent = FALSE, circular = FALSE, exception = FALSE; ^~~~~~~~ valid.c:26780:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE, ^~~~~~ valid.c: In function 'IsGeneXrefRedundant': valid.c:28000:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] Int2 count; ^~~~~ valid.c: In function 'ValidateSeqFeat': valid.c:28328:19: warning: unused variable 'is_nc' [-Wunused-variable] Boolean is_nc = FALSE; ^~~~~ valid.c:28308:19: warning: variable 'count' set but not used [-Wunused-but-set-variable] Int2 count; ^~~~~ valid.c:28286:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable] PubdescPtr pdp; ^~~ valid.c: In function 'CdTransCheck': valid.c:30490:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable] GeneRefPtr grp; ^~~ valid.c: In function 'SpliceCheckEx': valid.c:31313:19: warning: variable 'sep' set but not used [-Wunused-but-set-variable] SeqEntryPtr sep; ^~~ valid.c: In function 'CdsProductIdCheck': valid.c:31689:15: warning: variable 'grp' set but not used [-Wunused-but-set-variable] GeneRefPtr grp; ^~~ valid.c: In function 'ValidateSeqLoc': valid.c:31754:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable] Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE, ^~~~~~ valid.c:31753:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] SeqLocPtr tmp, prev; ^~~~ valid.c: In function 'SortSeqGraphProc': valid.c:32156:26: warning: self-comparison always evaluates to false [-Wtautological-compare] } else if (gip2->right < gip2->right) { ^ At top level: valid.c:30138:13: warning: 'ValidateTranslExcept' defined but not used [-Wunused-function] static void ValidateTranslExcept ( ^~~~~~~~~~~~~~~~~~~~ valid.c:27650:16: warning: 'CouldExtendPartial' defined but not used [-Wunused-function] static Boolean CouldExtendPartial (SeqLocPtr slp, Boolean partial5) ^~~~~~~~~~~~~~~~~~ valid.c:20878:28: warning: 'MultiGeneOverlapFree' defined but not used [-Wunused-function] static MultiGeneOverlapPtr MultiGeneOverlapFree (MultiGeneOverlapPtr m) ^~~~~~~~~~~~~~~~~~~~ valid.c:20828:19: warning: 'ListFeaturesContainedInLocation' defined but not used [-Wunused-function] static ValNodePtr ListFeaturesContainedInLocation (BioseqPtr bsp, SeqLocPtr slp, Uint1 seqfeatChoice, Uint1 featdefChoice) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ valid.c:17541:16: warning: 'IsEMBLAccn' defined but not used [-Wunused-function] static Boolean IsEMBLAccn (SeqEntryPtr sep, SeqLocPtr location) ^~~~~~~~~~ valid.c:14642:16: warning: 'CountryIsClosestToLatLon' defined but not used [-Wunused-function] static Boolean CountryIsClosestToLatLon ( ^~~~~~~~~~~~~~~~~~~~~~~~ valid.c:14545:16: warning: 'LatLonInRange' defined but not used [-Wunused-function] static Boolean LatLonInRange ( ^~~~~~~~~~~~~ valid.c:13478:16: warning: 'LatLonIsValid' defined but not used [-Wunused-function] static Boolean LatLonIsValid (CharPtr name) ^~~~~~~~~~~~~ valid.c:10462:16: warning: 'ConsistentWithC' defined but not used [-Wunused-function] static Boolean ConsistentWithC (Char ch) ^~~~~~~~~~~~~~~ valid.c:6952:13: warning: 'ReportLongSeqId' defined but not used [-Wunused-function] static void ReportLongSeqId (SeqIdPtr sip, ValidStructPtr vsp, Int4 max_len) ^~~~~~~~~~~~~~~ valid.c:5932:13: warning: 'CheckMutSetSources' defined but not used [-Wunused-function] static void CheckMutSetSources (BioSourcePtr biop, Pointer userdata) ^~~~~~~~~~~~~~~~~~ valid.c:4360:13: warning: 'FindLongIdsThatCollideWhenTruncated' defined but not used [-Wunused-function] static void FindLongIdsThatCollideWhenTruncated (SeqEntryPtr sep, ValidStructPtr vsp, Int4 trunc_len) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ valid.c:1511:16: warning: 'IsNotUnclassifiedExcept' defined but not used [-Wunused-function] static Boolean IsNotUnclassifiedExcept (ValidStructPtr vsp) ^~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valapi.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from valapi.c:50: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ valapi.c: In function 'DoesStringMatchExpression': valapi.c:263:15: warning: variable 'errstr' set but not used [-Wunused-but-set-variable] const char *errstr; ^~~~~~ valapi.c: In function 'DoesFieldValueMatchExpression': valapi.c:292:21: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", ufp->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~ %ld s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/alignmgr.h:261, from alignmgr.c:584: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ alignmgr.c: In function 'AlnMgrIndexParentSA': alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] sap->saip = (Pointer)AMAlignIndexFree(amaip); ^ alignmgr.c: In function 'AlnMgrGetNthBlockRange': alignmgr.c:4182:21: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] AMAlignIndexPtr amaip; ^~~~~ alignmgr.c: In function 'AlnMgrMakeFakeMultipleEx': alignmgr.c:5157:21: warning: variable 'nogap' set but not used [-Wunused-but-set-variable] Boolean nogap; ^~~~~ alignmgr.c: In function 'AlnMgrMapBioseqToBioseq': alignmgr.c:10840:19: warning: variable 'gap' set but not used [-Wunused-but-set-variable] Uint1 gap; ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from alignmgr.c:584: alignmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ alignmgr.c:10572:16: warning: 'am_merge_after_edit' defined but not used [-Wunused-function] static Boolean am_merge_after_edit (SeqAlignPtr sap) ^~~~~~~~~~~~~~~~~~~ alignmgr.c:6650:16: warning: 'AlnMgrJaggedIndex' defined but not used [-Wunused-function] static Boolean AlnMgrJaggedIndex(SeqAlignPtr sap, AMmsmsPtr ams_head, AMmsmsPtr *ams_mhead, Int4 numrows) ^~~~~~~~~~~~~~~~~ alignmgr.c:6123:18: warning: 'AlnMgrConstructOverlaps' defined but not used [-Wunused-function] static AMmsmsPtr AlnMgrConstructOverlaps(AMmsmsPtr ams_head) ^~~~~~~~~~~~~~~~~~~~~~~ alignmgr.c:5405:13: warning: 'AlnMgrMergeNeighbors' defined but not used [-Wunused-function] static void AlnMgrMergeNeighbors(SeqAlignPtr salp) ^~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function 'AlnMgrUnpackSeqAlign': alignmgr.c:1149:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wmaybe-uninitialized] sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs); ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function 'am_print_seqalign_indexes': alignmgr.c:2416:30: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] for (j=0; j<(saip->ssdp[i]->numsect); j++) ~~~~^~~~~~ alignmgr.c:2478:30: warning: 'amaip' may be used uninitialized in this function [-Wmaybe-uninitialized] for (i=0; inumbsqs; i++) ~~~~~^~~~~~~~~ alignmgr.c: In function 'AlnMgrGetNthSeqRangeInSA': alignmgr.c:4115:19: warning: 'tmp_end' may be used uninitialized in this function [-Wmaybe-uninitialized] *stop = tmp_end; ~~~~~~^~~~~~~~~ alignmgr.c:4113:20: warning: 'tmp_beg' may be used uninitialized in this function [-Wmaybe-uninitialized] *start = tmp_beg; ~~~~~~~^~~~~~~~~ alignmgr.c: In function 'AlnMgrDeleteNthRow': alignmgr.c:9809:31: warning: 'abp_prev' may be used uninitialized in this function [-Wmaybe-uninitialized] abp_prev->next = abp; ~~~~~~~~~~~~~~~^~~~~ alignmgr.c: In function 'AlnMgrGetSubAlign': alignmgr.c:9097:17: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized] salp = am_cleanupsalp(salp); ^~~~~~~~~~~~~~~~~~~~ alignmgr.c: In function 'AlnMgrMakeMultByIntersectOnMaster': alignmgr.c:5592:4: warning: 'sip_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqIdFree(sip_tmp); ^~~~~~~~~~~~~~~~~~ alignmgr.c:5865:10: warning: 'sip_head' may be used uninitialized in this function [-Wmaybe-uninitialized] while (sip && !done) ^ alignmgr.c:5845:18: note: 'sip_head' was declared here SeqIdPtr sip_head; ^~~~~~~~ alignmgr.c: In function 'am_is_consistent': alignmgr.c:10114:13: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized] AlnMgrGetNthUnalignedForNthRow(sap, n, i, &u_start, &u_stop); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliparse.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/aliparse.h:12, from aliparse.c:9: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ aliparse.c: In function 's_IsInterleaved': aliparse.c:929:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (s_configInfo.useMaybes == FALSE) && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ (seqLinePtr->maybe == FALSE)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c:823:20: warning: variable 'isMaybe' set but not used [-Wunused-but-set-variable] Boolean isMaybe; ^~~~~~~ aliparse.c: In function 's_ProcessInterId': aliparse.c:1000:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] ErrInfoPtr errPtr; ^~~~~~ aliparse.c: In function 's_ProcessInterSeq': aliparse.c:1090:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] ErrInfoPtr errPtr = NULL; ^~~~~~ aliparse.c: In function 's_AnalyzeInterleaved': aliparse.c:1193:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c: In function 's_ProcessContigId': aliparse.c:1385:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] ErrInfoPtr errPtr; ^~~~~~ aliparse.c: In function 's_ProcessContigSeq': aliparse.c:1476:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] ErrInfoPtr errPtr; ^~~~~~ aliparse.c: In function 's_AnalyzeContiguous': aliparse.c:1603:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c: In function 's_CheckContext': aliparse.c:2150:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (seqLinePtr->maybe == TRUE) && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ (s_configInfo.useMaybes == TRUE)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c:2131:20: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable] ErrInfoPtr errPtr; ^~~~~~ aliparse.c: In function 'PrintOutMultAlign': aliparse.c:3161:10: warning: statement with no effect [-Wunused-value] for (d; dnext = newSeqPart; ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/aliparse.h:12, from aliparse.c:9: ../include/ncbistr.h:337:19: warning: 'currentIdStr' may be used uninitialized in this function [-Wmaybe-uninitialized] #define StringCmp Nlm_StringCmp ^~~~~~~~~~~~~ aliparse.c:631:18: note: 'currentIdStr' was declared here CharPtr currentIdStr; ^~~~~~~~~~~~ aliparse.c: In function 'Ali_Read': aliparse.c:1355:16: warning: 'previousLength' may be used uninitialized in this function [-Wmaybe-uninitialized] errPtr = Ali_AddError (&(fileInfoPtr->errors),ERR_SEQ_LENGTH_MISMATCH, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ previousLength, ~~~~~~~~~~~~~~~ s_configInfo.declaredInfo.seqLength); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aliparse.c:1154:20: note: 'previousLength' was declared here Int4 previousLength; ^~~~~~~~~~~~~~ aliparse.c:927:18: warning: 'seqLinePtr' may be used uninitialized in this function [-Wmaybe-uninitialized] if (seqLinePtr->sequence != NULL) ~~~~~~~~~~^~~~~~~~~~ aliparse.c:820:20: note: 'seqLinePtr' was declared here SeqLineInfoPtr seqLinePtr; ^~~~~~~~~~ aliparse.c:748:3: warning: 'cLineType' may be used uninitialized in this function [-Wmaybe-uninitialized] fprintf(stderr,"%04d: SEQUENCE[%c] : %s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqLinePtr->rowNum, ~~~~~~~~~~~~~~~~~~~ cLineType, ~~~~~~~~~~ seqLinePtr->sequence); ~~~~~~~~~~~~~~~~~~~~~ aliparse.c:723:20: note: 'cLineType' was declared here Char cLineType; ^~~~~~~~~ aliparse.c: In function 'ALI_ConvertToNCBIData': aliparse.c:3276:4: warning: 'sep_new' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqAlignAddInSeqEntry (sep_head, sanp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliread.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from aliread.c:3: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/aliparse.h:15, from aliread.c:6: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignval.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from alignval.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ alignval.c: In function 'ValidateSeqlengthInDenseSeg': alignval.c:1267:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if(stptrtemp[j+i*aligndim]+lenptrtemp[i]>bslen) ^ alignval.c: In function 'PercentStringMatch': alignval.c:1579:32: warning: variable 'max_len' set but not used [-Wunused-but-set-variable] Int4 len1, len2, min_len, k, max_len; ^~~~~~~ alignval.c: In function 'CheckAlnSeqLens': alignval.c:2004:12: warning: variable 'aln_len' set but not used [-Wunused-but-set-variable] Int4 aln_len, start, stop; ^~~~~~~ alignval.c: In function 'ValidateSeqAlign': alignval.c:2125:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] MsgAnswer ans; ^~~ alignval.c: In function 'GetAlignmentColumnPercentIdentities': alignval.c:2511:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable] Int4 num_match; ^~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from alignval.c:57: alignval.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ alignval.c:2002:13: warning: 'CheckAlnSeqLens' defined but not used [-Wunused-function] static void CheckAlnSeqLens (SeqAlignPtr salp) ^~~~~~~~~~~~~~~ alignval.c:1560:16: warning: 'IsSipContainedInStdseg' defined but not used [-Wunused-function] static Boolean IsSipContainedInStdseg(SeqIdPtr sip, StdSegPtr ssp) ^~~~~~~~~~~~~~~~~~~~~~ alignval.c:602:13: warning: 'delete_bioseqs' defined but not used [-Wunused-function] static void delete_bioseqs (ValNodePtr ids, Uint2 entityID) ^~~~~~~~~~~~~~ alignval.c: In function 'ValMessage': alignval.c:465:92: warning: ', the alignment claims to co...' directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=] sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence. Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from alignval.c:46: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 255 and 593 bytes into a destination of size 552 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignval.c:448:92: warning: ', the alignment claims to co...' directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=] sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence. Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from alignval.c:46: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 255 and 593 bytes into a destination of size 552 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil1.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ sqnutil1.c: In function 'GeneExtendFunc': sqnutil1.c:2012:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable] GeneRefPtr grp; ^~~ sqnutil1.c: In function 'ParseAnticodon': sqnutil1.c:3494:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ sqnutil1.c: In function 'ParseCodeBreak': sqnutil1.c:3617:17: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ sqnutil1.c: In function 'CleanUpPubdescAuthors': sqnutil1.c:9093:20: warning: variable 'prev' set but not used [-Wunused-but-set-variable] ValNodePtr PNTR prev; ^~~~ sqnutil1.c: In function 'FixWrongFuzzOnPlusStrand': sqnutil1.c:11948:15: warning: unused variable 'spp' [-Wunused-variable] SeqPntPtr spp; ^~~ sqnutil1.c: In function 'FixWrongFuzzOnMinusStrand': sqnutil1.c:12007:15: warning: unused variable 'spp' [-Wunused-variable] SeqPntPtr spp; ^~~ sqnutil1.c: In function 'ConsolidateBioSourceNotes': sqnutil1.c:13250:21: warning: variable 'note_mod' set but not used [-Wunused-but-set-variable] OrgModPtr mod, note_mod; ^~~~~~~~ sqnutil1.c:13249:21: warning: variable 'note_ssp' set but not used [-Wunused-but-set-variable] SubSourcePtr ssp, note_ssp; ^~~~~~~~ sqnutil1.c: In function 'RemoveUnnecessaryGeneXrefs': sqnutil1.c:15059:24: warning: variable 'count' set but not used [-Wunused-but-set-variable] Int2 count; ^~~~~ sqnutil1.c: In function 'LinkTwoFeatures': sqnutil1.c:17930:25: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable] SeqFeatXrefPtr xref, prev_xref, next_xref; ^~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sqnutil1.c:63: sqnutil1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ sqnutil1.c:10386:16: warning: 'CleanUpSgml' defined but not used [-Wunused-function] static CharPtr CleanUpSgml ( ^~~~~~~~~~~ sqnutil1.c:10272:13: warning: 'SortGoTermsSfp' defined but not used [-Wunused-function] static void SortGoTermsSfp ( ^~~~~~~~~~~~~~ sqnutil1.c:7405:16: warning: 'IsStringSingleToken' defined but not used [-Wunused-function] static Boolean IsStringSingleToken (CharPtr str) ^~~~~~~~~~~~~~~~~~~ sqnutil1.c:4942:13: warning: 'CleanupConsSplice' defined but not used [-Wunused-function] static void CleanupConsSplice (GBQualPtr gbq) ^~~~~~~~~~~~~~~~~ sqnutil1.c:2007:16: warning: 'GeneExtendFunc' defined but not used [-Wunused-function] static Boolean GeneExtendFunc (GatherContextPtr gcp) ^~~~~~~~~~~~~~ sqnutil1.c: In function 'PromoteXrefsExEx': sqnutil1.c:2336:34: warning: '%s' directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=] sprintf (lcl, "lcl|%s", id); ^~ ~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil1.c:2321:32: warning: '%s' directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=] sprintf (lcl, "lcl|%s", id); ^~ ~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil1.c:2561:44: warning: '%s' directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=] sprintf (lcl, "lcl|%s", id); ^~ ~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil1.c:2546:42: warning: '%s' directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=] sprintf (lcl, "lcl|%s", id); ^~ ~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil1.c:2623:44: warning: '%s' directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=] sprintf (lcl, "lcl|%s", id); ^~ ~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil1.c:2608:42: warning: '%s' directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=] sprintf (lcl, "lcl|%s", id); ^~ ~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil1.c:2755:32: warning: '%s' directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=] sprintf (lcl, "lcl|%s", id); ^~ ~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil1.c:2740:30: warning: '%s' directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=] sprintf (lcl, "lcl|%s", id); ^~ ~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil1.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ sqnutil2.c: In function 'FindResidueByName': sqnutil2.c:5223:11: warning: variable 'last' set but not used [-Wunused-but-set-variable] Uint1 last; ^~~~ sqnutil2.c: In function 'ReadFeatureTableEx': sqnutil2.c:7254:18: warning: variable 'isnote' set but not used [-Wunused-but-set-variable] Boolean isnote; ^~~~~~ sqnutil2.c:7246:18: warning: variable 'endsinspace' set but not used [-Wunused-but-set-variable] Boolean endsinspace; ^~~~~~~~~~~ sqnutil2.c: In function 'SeqEntryCopyReplace': sqnutil2.c:9270:8: warning: variable 'type' set but not used [-Wunused-but-set-variable] Uint1 type = 0; ^~~~ sqnutil2.c: In function 'StreamingReadBioseq': sqnutil2.c:10095:10: warning: variable 'level' set but not used [-Wunused-but-set-variable] Int2 level; ^~~~~ sqnutil2.c: In function 'StreamAsnForDescriptors': sqnutil2.c:10328:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (rval = StreamingReadSeqEntry (aip, sp, &sr)) { ^~~~ sqnutil2.c: In function 'WriteAsnWithReplacedDescriptors': sqnutil2.c:10749:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (rval = StreamingReadWriteSeqEntry(desc_stream_list, aip_in, aip_out, sp)) { ^~~~ sqnutil2.c: In function 'ReadFeatureTableFile': sqnutil2.c:11700:18: warning: variable 'begin' set but not used [-Wunused-but-set-variable] Int4 begin; ^~~~~ sqnutil2.c: In function 'ReadFastaOnly': sqnutil2.c:11894:18: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] Char seqid [2048]; ^~~~~ sqnutil2.c: In function 'ReadDeltaFastaWithEmptyDefline': sqnutil2.c:12446:29: warning: variable 'seqid' set but not used [-Wunused-but-set-variable] Char line [4096], seqid [2048]; ^~~~~ sqnutil2.c: In function 'SortSeqGraphProc': sqnutil2.c:13002:26: warning: self-comparison always evaluates to false [-Wtautological-compare] } else if (gip2->right < gip2->right) { ^ sqnutil2.c: In function 'PrintQualityScoresToBuffer': sqnutil2.c:13052:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] Uint2 entityID; ^~~~~~~~ sqnutil2.c: In function 'GetScoresbySeqId': sqnutil2.c:13461:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] Uint2 entityID; ^~~~~~~~ sqnutil2.c: In function 'RemoveGapsFromDeltaLocation': sqnutil2.c:15480:15: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ sqnutil2.c: In function 'IsStringInSpanInList': sqnutil2.c:16693:11: warning: variable 'str_val' set but not used [-Wunused-but-set-variable] Int4 str_val; ^~~~~~~ sqnutil2.c:16691:27: warning: variable 'suffix_len' set but not used [-Wunused-but-set-variable] Int4 prefix_len = 0, suffix_len; ^~~~~~~~~~ sqnutil2.c: In function 'CreateStructuredCommentsFromFile': sqnutil2.c:18415:35: warning: variable 'vnp_h' set but not used [-Wunused-but-set-variable] ValNodePtr table, header, line, vnp_h, vnp_l, tmp; ^~~~~ sqnutil2.c: In function 'AlignmentIntervalToString': sqnutil2.c:18779:14: warning: variable 'target_strand' set but not used [-Wunused-but-set-variable] Uint1 target_strand; ^~~~~~~~~~~~~ sqnutil2.c:18778:14: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] Int4 seq_len; ^~~~~~~ sqnutil2.c: In function 'AdjustForConsensusSpliceCallback': sqnutil2.c:20313:33: warning: variable 'partial5_last' set but not used [-Wunused-but-set-variable] Boolean partial5, partial3, partial5_last, partial3_last, first = TRUE; ^~~~~~~~~~~~~ sqnutil2.c: In function 'RemoveGIProc': sqnutil2.c:20926:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable] SeqIdPtr nextid, sip; ^~~~~~ sqnutil2.c: In function 'RemoveBadCodonRecognizedCallback': sqnutil2.c:22812:13: warning: variable 'rcodon' set but not used [-Wunused-but-set-variable] Uint1 rcodon [4]; ^~~~~~ sqnutil2.c: In function 'CompareStructuredComment': sqnutil2.c:25151:23: warning: variable 'ovp2' set but not used [-Wunused-but-set-variable] ObjValNodePtr ovp1, ovp2; ^~~~ sqnutil2.c:25151:17: warning: variable 'ovp1' set but not used [-Wunused-but-set-variable] ObjValNodePtr ovp1, ovp2; ^~~~ sqnutil2.c: In function 'UniqueAndCountValNodeCS': sqnutil2.c:25546:17: warning: variable 'curr' set but not used [-Wunused-but-set-variable] ValNodePtr curr; ^~~~ sqnutil2.c: In function 'PerformArticleQuery': sqnutil2.c:25810:20: warning: variable 'debug_mode' set but not used [-Wunused-but-set-variable] Boolean debug_mode = FALSE; ^~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sqnutil2.c:58: sqnutil2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ sqnutil2.c:18065:19: warning: 'AuthAffilListFree' defined but not used [-Wunused-function] static ValNodePtr AuthAffilListFree (ValNodePtr list) ^~~~~~~~~~~~~~~~~ sqnutil2.c:18044:21: warning: 'AuthAffilNew' defined but not used [-Wunused-function] static AuthAffilPtr AuthAffilNew (CharPtr affil) ^~~~~~~~~~~~ sqnutil2.c:16282:19: warning: 'MakeTranscriptomeIDTokensFromLine' defined but not used [-Wunused-function] static ValNodePtr MakeTranscriptomeIDTokensFromLine (CharPtr line) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c:16188:13: warning: 'RevCompFeatsOnBioseq' defined but not used [-Wunused-function] static void RevCompFeatsOnBioseq (BioseqPtr bsp) ^~~~~~~~~~~~~~~~~~~~ sqnutil2.c:8333:16: warning: 'DoesSeqEntryAccessionMatchList' defined but not used [-Wunused-function] static Boolean DoesSeqEntryAccessionMatchList (SeqEntryPtr sep, ValNodePtr accn_list) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c:4684:16: warning: 'IsNonSeqChar' defined but not used [-Wunused-function] static Boolean IsNonSeqChar (Char ch, Boolean is_prot) ^~~~~~~~~~~~ sqnutil2.c: In function 'ReplaceLocalID': sqnutil2.c:23605:22: warning: '%d' directive writing between 1 and 6 bytes into a region of size between 5 and 68 [-Wformat-overflow=] sprintf (tmp, "%s__%d", str, (int) count); ^~ sqnutil2.c:23605:17: note: directive argument in the range [-32768, 32767] sprintf (tmp, "%s__%d", str, (int) count); ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 72 bytes into a destination of size 70 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c: In function 'DoAddToSecAccn': sqnutil2.c:2429:28: warning: '%*ld' directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=] sprintf (numbers, "%*ld", digits, (long) idx); ^~~~ sqnutil2.c:2429:27: note: directive argument in the range [-2147483648, 2147483647] sprintf (numbers, "%*ld", digits, (long) idx); ^~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c: In function 'AdjustSeqEntryForConsensusSpliceBioseqCallback': sqnutil2.c:20313:48: warning: 'partial3_last' may be used uninitialized in this function [-Wmaybe-uninitialized] Boolean partial5, partial3, partial5_last, partial3_last, first = TRUE; ^~~~~~~~~~~~~ sqnutil2.c: In function 'DoAddToSeqHist': sqnutil2.c:2593:28: warning: '%*ld' directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=] sprintf (numbers, "%*ld", digits, (long) idx); ^~~~ sqnutil2.c:2593:27: note: directive argument in the range [-2147483648, 2147483647] sprintf (numbers, "%*ld", digits, (long) idx); ^~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c: In function 'ReadAsnFastaOrFlatFileEx': sqnutil2.c:7919:52: warning: '%s' directive writing up to 2047 bytes into a region of size 103 [-Wformat-overflow=] sprintf (note, "No vector hits found for %s", seqid); ^~ sqnutil2.c:11125:44: sap = ReadVecScreenTable (&fc, seqid, annotname); ~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 26 and 2073 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil2.c: In function 'PrintQualityScoresToBuffer': sqnutil2.c:13110:47: warning: ', Max: ' directive writing 7 bytes into a region of size between 2 and 63 [-Wformat-overflow=] sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title, ^~~~~~~ sqnutil2.c:13110:17: note: directive argument in the range [-2147483647, 2147483647] sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil2.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 32 or more bytes (assuming 103) into a destination of size 84 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil3.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil3.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ sqnutil3.c: In function 'BspLinkCDSmRNAbyOverlap': sqnutil3.c:528:22: warning: variable 'count' set but not used [-Wunused-but-set-variable] Int2 count; ^~~~~ sqnutil3.c: In function 'CautiousSeqEntryCleanup': sqnutil3.c:2178:16: warning: variable 'taxserver' set but not used [-Wunused-but-set-variable] Boolean taxserver; ^~~~~~~~~ sqnutil3.c: In function 'AddGapSeqLit': sqnutil3.c:3127:19: warning: unused variable 'gap_chars' [-Wunused-variable] CharPtr gap_chars = "NNNNNNNNNN" ^~~~~~~~~ sqnutil3.c: In function 'ConvertSegSetsToDeltaSequencesInt': sqnutil3.c:3382:26: warning: variable 'prev_sep' set but not used [-Wunused-but-set-variable] SeqEntryPtr sub_sep, prev_sep, next_sep; ^~~~~~~~ sqnutil3.c: In function 'MakeSequinDataFromAlignmentEx': sqnutil3.c:4797:32: warning: variable 'num_sets' set but not used [-Wunused-but-set-variable] Int4 index, curr_seg, num_sets; ^~~~~~~~ sqnutil3.c:4791:26: warning: variable 'salp_last' set but not used [-Wunused-but-set-variable] SeqAlignPtr salp_list, salp_last; ^~~~~~~~~ sqnutil3.c:4791:15: warning: variable 'salp_list' set but not used [-Wunused-but-set-variable] SeqAlignPtr salp_list, salp_last; ^~~~~~~~~ sqnutil3.c: In function 'ConvertContainedCDSToMiscFeat': sqnutil3.c:12824:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ sqnutil3.c: In function 'OrgNameMatchExceptOldName': sqnutil3.c:13713:28: warning: self-comparison always evaluates to false [-Wtautological-compare] || onp2->mgcode != onp2->mgcode ^~ sqnutil3.c: In function 'FindMismatchedCitSubAffiliations': sqnutil3.c:19281:14: warning: variable 'has_seq_submit' set but not used [-Wunused-but-set-variable] Boolean has_seq_submit = TRUE; ^~~~~~~~~~~~~~ sqnutil3.c: In function 'GetCDSformRNA': sqnutil3.c:20267:8: warning: variable 'count' set but not used [-Wunused-but-set-variable] Int2 count; ^~~~~ sqnutil3.c: In function 'FindTextInFlatfileOncaller': sqnutil3.c:22140:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] Boolean okay; ^~~~ sqnutil3.c: In function 'CheckForTitleAuthorConflicts': sqnutil3.c:23168:14: warning: variable 'author_conflict' set but not used [-Wunused-but-set-variable] Boolean author_conflict = FALSE; ^~~~~~~~~~~~~~~ sqnutil3.c: In function 'SortVnpByBspProjectId': sqnutil3.c:26956:31: warning: the comparison will always evaluate as 'true' for the address of 'vnp2' will never be NULL [-Waddress] if (vnp1 != NULL &&& vnp2 != NULL) { ^~ sqnutil3.c: In function 'GetDiscrepancyItemTextEx': sqnutil3.c:31033:21: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable] Boolean special_flag = FALSE; ^~~~~~~~~~~~ sqnutil3.c: In function 'CollectionDateIsInTheFuture': sqnutil3.c:34586:20: warning: variable 'time' set but not used [-Wunused-but-set-variable] CharPtr str, time; ^~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from sqnutil3.c:62: sqnutil3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ sqnutil3.c: In function 'FillInMissingTraces': sqnutil3.c:35189:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ At top level: sqnutil3.c:36777:13: warning: 'TestLatLonFormatting' defined but not used [-Wunused-function] static void TestLatLonFormatting (FILE *fp) ^~~~~~~~~~~~~~~~~~~~ sqnutil3.c:34406:22: warning: 'BetterDateFree' defined but not used [-Wunused-function] static BetterDatePtr BetterDateFree (BetterDatePtr dp) ^~~~~~~~~~~~~~ sqnutil3.c:33998:16: warning: 'GetColon' defined but not used [-Wunused-function] static CharPtr GetColon (CharPtr str) ^~~~~~~~ sqnutil3.c:17224:24: warning: 'IntervalPairFree' defined but not used [-Wunused-function] static IntervalPairPtr IntervalPairFree (IntervalPairPtr i) ^~~~~~~~~~~~~~~~ sqnutil3.c:10883:16: warning: 'IsMitochondrionBioseq' defined but not used [-Wunused-function] static Boolean IsMitochondrionBioseq(BioseqPtr bsp) ^~~~~~~~~~~~~~~~~~~~~ sqnutil3.c: In function 'LinkCDSmRNAbyLabelAndLocationCallback': sqnutil3.c:876:23: warning: 'best_diff' may be used uninitialized in this function [-Wmaybe-uninitialized] } else if (diff < best_diff) { ^ sqnutil3.c: In function 'tRNASameStrandBioseqCallback': sqnutil3.c:16769:8: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized] if (strand == Seq_strand_minus) { ^ sqnutil3.c: In function 'CheckForDivConflicts': sqnutil3.c:8132:15: warning: 'sfp' may be used uninitialized in this function [-Wmaybe-uninitialized] else ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQFEAT, sfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c:8131:13: warning: 'sdp' may be used uninitialized in this function [-Wmaybe-uninitialized] ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQDESC, sdp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c: In function 'FindMismatchedComments': sqnutil3.c:26612:47: warning: 'sdp' may be used uninitialized in this function [-Wmaybe-uninitialized] sprintf (fmt, sub_fmt, (CharPtr) sdp->data.ptrvalue); ~~~~~~~~~^~~~~~~~~ sqnutil3.c: In function 'FillInMissingTraces': sqnutil3.c:35188:27: warning: '%s' directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=] sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out); ^~ ~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil3.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 9 or more bytes (assuming 8199) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil3.c:35188:27: warning: '%s' directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=] sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out); ^~ ~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil3.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 9 or more bytes (assuming 8199) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil4.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/sqnutils.h:48, from sqnutil4.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ sqnutil4.c: In function 'ListClauses': sqnutil4.c:8566:43: warning: variable 'twobefore' set but not used [-Wunused-but-set-variable] FeatureClausePtr thisclause, onebefore, twobefore, oneafter, twoafter; ^~~~~~~~~ sqnutil4.c: In function 'SmashOneTallClause': sqnutil4.c:9900:20: warning: variable 'subclause_featlist' set but not used [-Wunused-but-set-variable] ValNodePtr subclause_featlist; ^~~~~~~~~~~~~~~~~~ sqnutil4.c: In function 'GetFeatureClauseForSeg': sqnutil4.c:10787:21: warning: variable 'start' set but not used [-Wunused-but-set-variable] Int4 start, stop; ^~~~~ sqnutil4.c: In function 'RemoveAutodefObjectsForDesc': sqnutil4.c:13618:18: warning: unused variable 'bssp' [-Wunused-variable] BioseqSetPtr bssp; ^~~~ sqnutil4.c:13617:15: warning: unused variable 'bsp' [-Wunused-variable] BioseqPtr bsp; ^~~ sqnutil4.c: In function 'ConvertProtToImpFunc': sqnutil4.c:15072:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] Uint2 entityID; ^~~~~~~~ sqnutil4.c: In function 'ExtraCDSCreationActions': sqnutil4.c:15989:28: warning: variable 'nsep' set but not used [-Wunused-but-set-variable] SeqEntryPtr psep, nsep; ^~~~ sqnutil4.c: In function 'TESTDisplayQualCombo': sqnutil4.c:17099:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] Int4 val; ^~~ sqnutil4.c: In function 'ConvertCDSToMatPeptideForOverlappingCDS': sqnutil4.c:18589:15: warning: variable 'crp' set but not used [-Wunused-but-set-variable] CdRegionPtr crp; ^~~ sqnutil4.c: In function 'AddNewUniqueAnnotations': sqnutil4.c:18780:39: warning: variable 'sap_tmp_next' set but not used [-Wunused-but-set-variable] SeqAnnotPtr sap, sap_next, sap_tmp, sap_tmp_next, sap_copy, last_sap; ^~~~~~~~~~~~ sqnutil4.c: In function 'AssignBioseqToLineageGroup': sqnutil4.c:19443:27: warning: variable 'vnp_last' set but not used [-Wunused-but-set-variable] ValNodePtr list, vnp, vnp_last = NULL; ^~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from sqnutil4.c:58: sqnutil4.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ In file included from ../include/tax3api.h:51, from sqnutil4.c:64: ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~ sqnutil4.c:17248:13: warning: 'TESTDisplayList' defined but not used [-Wunused-function] static void TESTDisplayList (ValNodePtr new_list) ^~~~~~~~~~~~~~~ sqnutil4.c:17219:19: warning: 'ExpandOneComboListUsingAllPresentQuals' defined but not used [-Wunused-function] static ValNodePtr ExpandOneComboListUsingAllPresentQuals (QualComboPtr q) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil4.c:16930:16: warning: 'RemoveFieldFromUniqBioSrcGrpList' defined but not used [-Wunused-function] static Boolean RemoveFieldFromUniqBioSrcGrpList (ValNodePtr list, FieldTypePtr field) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sqnutil4.c:10029:19: warning: 'RemoveAllButLastCDS' defined but not used [-Wunused-function] static ValNodePtr RemoveAllButLastCDS ( ^~~~~~~~~~~~~~~~~~~ sqnutil4.c:9998:13: warning: 'SmashTallClauses' defined but not used [-Wunused-function] static void SmashTallClauses ( ^~~~~~~~~~~~~~~~ sqnutil4.c:9834:13: warning: 'RemoveFeats' defined but not used [-Wunused-function] static void RemoveFeats ( ^~~~~~~~~~~ sqnutil4.c:5211:13: warning: 'CountFeatures' defined but not used [-Wunused-function] static Int4 CountFeatures ( ^~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF subutil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/objsub.h:76, from ../include/subutil.h:50, from subutil.c:54: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ subutil.c: In function 'AddSeqLitToBioseq': subutil.c:769:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] ValNodePtr vnp; ^~~ subutil.c: In function 'AddReferenceToSegmentedEntry': subutil.c:1163:22: warning: variable 'prev' set but not used [-Wunused-but-set-variable] SeqEntryPtr tmp, prev; ^~~~ subutil.c: In function 'GetDNAConv': subutil.c:1624:15: warning: array subscript has type 'char' [-Wchar-subscripts] dnaconv[*ptr] = *ptr; ^ subutil.c: In function 'GetProteinConv': subutil.c:1646:16: warning: array subscript has type 'char' [-Wchar-subscripts] protconv[*ptr] = *ptr; ^ subutil.c: In function 'AddBasesToByteStore': subutil.c:1669:26: warning: array subscript has type 'char' [-Wchar-subscripts] residue = dnaconv[ch]; ^ subutil.c: In function 'AddAAsToByteStore': subutil.c:1700:25: warning: array subscript has type 'char' [-Wchar-subscripts] residue = aaconv[ch]; ^ subutil.c: In function 'CitArtBuild': subutil.c:2683:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] ValNodePtr vnp, tmp; ^~~ subutil.c: In function 'MakeRNAFeature': subutil.c:3639:29: warning: comparison between pointer and zero character constant [-Wpointer-compare] if (AA_for_tRNA != '\0') ^~ subutil.c:3639:17: note: did you mean to dereference the pointer? if (AA_for_tRNA != '\0') ^ At top level: subutil.c:3546:20: warning: 'TranslateCdRegionNew' defined but not used [-Wunused-function] static SeqEntryPtr TranslateCdRegionNew ( ^~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF edutil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/seqport.h:47, from ../include/edutil.h:188, from edutil.c:365: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ edutil.c: In function 'SeqLocsToDeltaSeqs': edutil.c:795:14: warning: variable 'sip' set but not used [-Wunused-but-set-variable] SeqIdPtr sip; ^~~ edutil.c: In function 'SeqLocCopyPart': edutil.c:2243:13: warning: variable 'done' set but not used [-Wunused-but-set-variable] Boolean done, started, wasa_null, hada_null; ^~~~ edutil.c: In function 'IndexedSeqFeatsCopy': edutil.c:2400:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] ValNodePtr region; ^~~~~~ edutil.c: In function 'SeqFeatsCopy': edutil.c:2504:16: warning: variable 'region' set but not used [-Wunused-but-set-variable] ValNodePtr region; ^~~~~~ edutil.c: In function 'SeqLocInsert': edutil.c:3686:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] Int4 diff, numpnt, i, tpos; ^~~~ edutil.c: In function 'SeqEdRecreateDeletedFeats': edutil.c:4212:19: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] SeqFeatPtr sfp; ^~~ edutil.c: In function 'SeqEdSeqLocInsert': edutil.c:4512:8: warning: variable 'diff' set but not used [-Wunused-but-set-variable] Int4 diff, numpnt, i, tpos; ^~~~ edutil.c: In function 'SeqEdSeqLocDelete': edutil.c:5069:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable] Int4 diff; ^~~~ edutil.c: In function 'SeqEdInsertAdjustFeat': edutil.c:5300:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses] && sfp->data.choice == SEQFEAT_CDREGION) edutil.c: In function 'SeqEdDeleteFromBsp': edutil.c:6485:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] && sfp->data.choice == SEQFEAT_CDREGION) edutil.c:6548:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses] && sfp->data.choice == SEQFEAT_CDREGION) edutil.c:6437:21: warning: variable 'merge_mode' set but not used [-Wunused-but-set-variable] Boolean merge_mode; ^~~~~~~~~~ edutil.c:6428:21: warning: variable 'feats_altered' set but not used [-Wunused-but-set-variable] Boolean feats_altered = FALSE; ^~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff1.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from asn2ff1.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2ff1.c: In function 'asn2ff_print': asn2ff1.c:289:17: warning: unused variable 'dsp' [-Wunused-variable] DescrStructPtr dsp = NULL; ^~~ asn2ff1.c: In function 'Asn2ffJobCreate': asn2ff1.c:351:18: warning: unused variable 'itemID' [-Wunused-variable] Uint4 itemID = 0; ^~~~~~ asn2ff1.c: In function 'SeqEntryToEntrez': asn2ff1.c:498:15: warning: unused variable 'slp' [-Wunused-variable] SeqLocPtr slp = NULL; ^~~ asn2ff1.c: In function 'SeqLocToFlat': asn2ff1.c:1518:19: warning: unused variable 'itemID' [-Wunused-variable] Uint4 itemID=0; ^~~~~~ asn2ff1.c: In function 'asn2ff_setup': asn2ff1.c:1579:12: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] BioseqPtr bsp; ^~~ asn2ff1.c: In function 'PrintStatusLine': asn2ff1.c:2197:15: warning: unused variable 'ptr' [-Wunused-variable] CharPtr u, ptr=NULL; ^~~ asn2ff1.c: In function 'asn2gb_setup': asn2ff1.c:2403:24: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (ajp->genome_view && gbp->map == FALSE || ajp->contig_view) { At top level: asn2ff1.c:2189:13: warning: 'PrintStatusLine' defined but not used [-Wunused-function] static void PrintStatusLine(Asn2ffJobPtr ajp, GBEntryPtr gbp) ^~~~~~~~~~~~~~~ asn2ff1.c:2171:16: warning: 'find_user_object' defined but not used [-Wunused-function] static Boolean find_user_object(BioseqPtr bsp) ^~~~~~~~~~~~~~~~ asn2ff1.c:816:19: warning: 'SeqEntryToLinkStrEx' defined but not used [-Wunused-function] static LinkStrPtr SeqEntryToLinkStrEx(Asn2ffJobPtr ajp, SeqEntryPtr sep, LinkStrPtr lsp, Uint1 format) ^~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff1.c:45: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ asn2ff1.c: In function 'print_taxinfo': asn2ff1.c:4356:19: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(tmp, "%d", gcode); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from asn2ff1.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 4 bytes into a destination of size 3 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff1.c: In function 'asn2embl_setup': asn2ff1.c:2754:7: warning: 'max' may be used uninitialized in this function [-Wmaybe-uninitialized] if (max == index+1) { ^ asn2ff1.c: In function 'asn2gp_setup': asn2ff1.c:2942:4: warning: 'feat_num' may be used uninitialized in this function [-Wmaybe-uninitialized] for (index=0; index < feat_num; index++) { ^~~ asn2ff1.c: In function 'SeqEntryToGBFlatNoSeq': asn2ff1.c:1292:15: warning: 'rsult' may be used uninitialized in this function [-Wmaybe-uninitialized] Boolean rsult; ^~~~~ asn2ff1.c: In function 'PrintSequence': asn2ff1.c:5218:25: warning: '%9ld' directive writing between 9 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(num_ptr, "%9ld", (long) (total+1 - loc_start)); ^~~~ asn2ff1.c:5218:24: note: directive argument in the range [-2147483648, 2147483647] sprintf(num_ptr, "%9ld", (long) (total+1 - loc_start)); ^~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from asn2ff1.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 10 and 12 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from asn2ff2.c:216: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2ff2.c: In function 'GetStrForBankit': asn2ff2.c:518:9: warning: unused variable 'i' [-Wunused-variable] Int2 i=0, ptrlen = 0; ^ asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:769:34: warning: unused variable 'string' [-Wunused-variable] CharPtr buf = NULL, ptr = NULL, string=NULL, new_string=NULL, str=NULL; ^~~~~~ asn2ff2.c: In function 'GP_GetSeqDescrComms': asn2ff2.c:1163:10: warning: unused variable 'got_comment' [-Wunused-variable] Boolean got_comment=FALSE; ^~~~~~~~~~~ asn2ff2.c: At top level: asn2ff2.c:1358:8: warning: return type defaults to 'int' [-Wimplicit-int] static ChoicePID(SeqIdPtr sid) ^~~~~~~~~ asn2ff2.c: In function 'GetGibbsqCommentLength': asn2ff2.c:1600:7: warning: unused variable 'gibbsq' [-Wunused-variable] Int4 gibbsq=0, total; ^~~~~~ asn2ff2.c: In function 'GatherDescrByChoice': asn2ff2.c:1864:8: warning: variable 'bspID' set but not used [-Wunused-but-set-variable] Uint2 bspID; ^~~~~ At top level: asn2ff2.c:1190:16: warning: 'GetSPBlock' defined but not used [-Wunused-function] static CharPtr GetSPBlock (Asn2ffJobPtr ajp, GBEntryPtr gbp) ^~~~~~~~~~ asn2ff2.c:680:16: warning: 'GetEvidence' defined but not used [-Wunused-function] static CharPtr GetEvidence(Asn2ffJobPtr ajp, GBEntryPtr gbp) ^~~~~~~~~~~ asn2ff2.c:232:16: warning: 'has_comment' defined but not used [-Wunused-variable] static Boolean has_comment; ^~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff2.c:218: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ asn2ff2.c: In function 'GetCommentByChoice': asn2ff2.c:829:8: warning: 'is_other' may be used uninitialized in this function [-Wmaybe-uninitialized] if (is_other == TRUE && mfp->completeness) { ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff3.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2ff3.c: In function 'PutGeneFirst': asn2ff3.c:1073:26: warning: unused variable 'qual_temp' [-Wunused-variable] GBQualPtr gbqual, qual, qual_temp=NULL, qual_gene=NULL; ^~~~~~~~~ asn2ff3.c:1072:10: warning: unused variable 'still_looking' [-Wunused-variable] Boolean still_looking=TRUE; ^~~~~~~~~~~~~ asn2ff3.c: In function 'mRNAEvidenceComment': asn2ff3.c:1157:9: warning: unused variable 'Locus_id' [-Wunused-variable] Int4 Locus_id = 0; ^~~~~~~~ asn2ff3.c: In function 'Add_gene_id': asn2ff3.c:2717:24: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' {aka 'void *'} [-Wformat=] sprintf(val, "GeneID:%s", vnp->data.ptrvalue); ~^ ~~~~~~~~~~~~~~~~~~ %p asn2ff3.c: In function 'Add_trid': asn2ff3.c:3123:9: warning: unused variable 'gi' [-Wunused-variable] BIG_ID gi = -1; ^~ At top level: asn2ff3.c:2702:13: warning: 'Add_gene_id' defined but not used [-Wunused-function] static void Add_gene_id (GeneStructPtr gsp, SeqFeatPtr sfp_out) ^~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff3.c:39: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: asn2ff3.c: In function 'Add_dbxref.isra.1': ../include/ncbimem.h:232:23: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] #define MemFree Nlm_MemFree ^~~~~~~~~~~ asn2ff3.c:216:10: note: 'val' was declared here CharPtr val; ^~~ asn2ff3.c: In function 'GettRNAaa': asn2ff3.c:1619:11: warning: 'seq_code' may be used uninitialized in this function [-Wmaybe-uninitialized] ptr = Get3LetterSymbol(seq_code, table, trna->aa, error_msgs); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: asn2ff3.c: In function 'mRNAEvidenceComment': ../include/ncbistr.h:331:19: warning: 'ne_name' may be used uninitialized in this function [-Wmaybe-uninitialized] #define StringLen Nlm_StringLen ^~~~~~~~~~~~~ asn2ff3.c:1153:32: note: 'ne_name' was declared here CharPtr method = NULL, ptr, ne_name; ^~~~~~~ asn2ff3.c: In function 'ConvertToNAImpFeat': asn2ff3.c:2254:23: warning: '%ld' directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=] sprintf(buf_ptr, "%ld", (long) (cdr->frame)); ^~~ asn2ff3.c:2254:22: note: directive argument in the range [1, 255] sprintf(buf_ptr, "%ld", (long) (cdr->frame)); ^~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff3.c:39: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 4 bytes into a destination of size 2 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff4.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff4.c:273: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2ff4.c: In function 'FlatLocPoint': asn2ff4.c:437:15: warning: variable 'order' set but not used [-Wunused-but-set-variable] static Uint1 order[NUM_SEQID]; ^~~~~ asn2ff4.c: In function 'do_FlatLoc': asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if ( ! FlatVirtLoc( bsp, slp)) ^ asn2ff4.c: At top level: asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wimplicit-int] static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2) ^~~~~~~~~~ asn2ff4.c: In function 'CreateImpFeatFromProt': asn2ff4.c:1659:14: warning: variable 'grp' set but not used [-Wunused-but-set-variable] GeneRefPtr grp; ^~~ asn2ff4.c: In function 'MatchNAGeneToFeat': asn2ff4.c:2196:17: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] NoteStructPtr nsp; /* UNUSED */ ^~~ asn2ff4.c: In function 'MatchAAGeneToFeat': asn2ff4.c:2367:18: warning: variable 'nsp' set but not used [-Wunused-but-set-variable] NoteStructPtr nsp; /* UNUSED */ ^~~ asn2ff4.c: In function 'SortOrganizeFeat': asn2ff4.c:2457:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ofp == NULL) ^~ asn2ff4.c:2459:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ofp->sfpListsize > 0 && ofp->sortListsize < ofp->sfpListsize) { ^~ asn2ff4.c: In function 'OrganizeSeqFeat': asn2ff4.c:2578:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ajp->ignore_top) ^~ asn2ff4.c:2580:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' gsc.seglevels = 1; ^~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff4.c:273: At top level: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ asn2ff4.c: In function 'CheckNewSfpLoc.isra.0': asn2ff4.c:1767:7: warning: 'slp' may be used uninitialized in this function [-Wmaybe-uninitialized] if (SeqLocLen(slp) <= BioseqGetLen(bsp)) { ^~~~~~~~~~~~~~ asn2ff4.c: In function 'FlatLocHalfCaret': asn2ff4.c:388:35: warning: '%ld' directive writing between 1 and 11 bytes into a region of size between 2 and 22 [-Wformat-overflow=] sprintf(localbuf,"(%ld.%ld)..(%ld.%ld)", ^~~ asn2ff4.c:388:22: note: directive argument in the range [-2147483648, 2147483647] sprintf(localbuf,"(%ld.%ld)..(%ld.%ld)", ^~~~~~~~~~~~~~~~~~~~~~ asn2ff4.c:388:22: note: directive argument in the range [-2147483648, 2147483647] In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff4.c:273: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 13 and 53 bytes into a destination of size 30 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff4.c: In function 'CreateImpFeatFromProt': asn2ff4.c:1723:18: warning: '%d' directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=] sprintf(buf, "%d", cdr->frame); ^~ asn2ff4.c:1723:17: note: directive argument in the range [1, 255] sprintf(buf, "%d", cdr->frame); ^~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff4.c:273: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 4 bytes into a destination of size 2 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff5.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2ff5.c: In function 'format_cit_sub': asn2ff5.c:1023:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] format == EMBLPEPT_FMT && afp->choice == 1) ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ asn2ff5.c:926:41: warning: variable 'need_space' set but not used [-Wunused-but-set-variable] Boolean need_comma = FALSE, /*UNUSED*/need_space = TRUE; ^~~~~~~~~~ asn2ff5.c: In function 'format_thesis': asn2ff5.c:1213:20: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] Boolean /*UNUSED*/embl_format = FALSE; ^~~~~~~~~~~ asn2ff5.c: In function 'format_book': asn2ff5.c:1296:10: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable] Boolean embl_format = FALSE; ^~~~~~~~~~~ asn2ff5.c: In function 'format_jourarticle': asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (ip->pages != NULL) ^ asn2ff5.c: In function 'StripParanthesis': asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value] temp++; *ptr_in++; ^~~~~~~~~ asn2ff5.c: In function 'PostARefErrMessage': asn2ff5.c:3005:20: warning: variable 'ignore_this' set but not used [-Wunused-but-set-variable] Boolean /*UNUSED*/ignore_this, submit=FALSE, error; ^~~~~~~~~~~ asn2ff5.c: At top level: asn2ff5.c:188:26: warning: 'GetSubmitterName' declared 'static' but never defined [-Wunused-function] static CharPtr /*UNUSED*/GetSubmitterName PROTO ((Uint1 format, ValNodePtr pub)); ^~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from asn2ff5.c:177: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ asn2ff5.c: In function 'FlatJournal': asn2ff5.c:1121:19: warning: '%ld' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] sprintf(buf,"%s%ld ", " ", (long) pat_seqid); ^~~ asn2ff5.c:1121:16: note: directive argument in the range [1, 2147483647] sprintf(buf,"%s%ld ", " ", (long) pat_seqid); ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 13 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff5.c:1115:19: warning: '%ld' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); ^~~ asn2ff5.c:1115:16: note: directive argument in the range [1, 2147483647] sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); ^~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from asn2ff5.c:177: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 14 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff5.c:1193:31: warning: 'afp' may be used uninitialized in this function [-Wmaybe-uninitialized] temp = StringMove(temp,afp -> country); ~~~~^~~~~~~~~~ asn2ff5.c:1051:11: note: 'afp' was declared here AffilPtr afp; ^~~ asn2ff5.c: In function 'CheckPubs': asn2ff5.c:2772:5: warning: 'status' may be used uninitialized in this function [-Wmaybe-uninitialized] PostARefErrMessage (ajp, bsp, psp, NULL, status, NULL); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff6.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2ff6.c: In function 'AddGBQual': asn2ff6.c:1327:18: warning: variable 'note' set but not used [-Wunused-but-set-variable] GBQualPtr curq, note = NULL; ^~~~ asn2ff6.c: In function 'FlatOrganelle': asn2ff6.c:1483:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! retval ) ^~ asn2ff6.c:1486:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' break; ^~~~~ asn2ff6.c: In function 'BioseqGetGBDivCodeEx': asn2ff6.c:1700:23: warning: variable 'diff' set but not used [-Wunused-but-set-variable] Int2 tech, /*UNUSED*/diff, retval = 0; ^~~~ asn2ff6.c: In function 'GR_PrintPubs': asn2ff6.c:2297:41: warning: unused variable 'stop' [-Wunused-variable] Int4 muid, pmid, pat_seqid=0, start=0, stop=0; ^~~~ asn2ff6.c:2297:32: warning: unused variable 'start' [-Wunused-variable] Int4 muid, pmid, pat_seqid=0, start=0, stop=0; ^~~~~ asn2ff6.c:2297:13: warning: variable 'pmid' set but not used [-Wunused-but-set-variable] Int4 muid, pmid, pat_seqid=0, start=0, stop=0; ^~~~ asn2ff6.c:2296:10: warning: unused variable 'descr' [-Wunused-variable] CharPtr descr = NULL; ^~~~~ asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2786:17: warning: variable 'base_locus_max' set but not used [-Wunused-but-set-variable] Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits; ^~~~~~~~~~~~~~ asn2ff6.c: In function 'ValidateOtherAccession': asn2ff6.c:2886:29: warning: unused variable 'FiveNum' [-Wunused-variable] Boolean FirstLetter=FALSE, FiveNum = FALSE; ^~~~~~~ asn2ff6.c:2886:10: warning: unused variable 'FirstLetter' [-Wunused-variable] Boolean FirstLetter=FALSE, FiveNum = FALSE; ^~~~~~~~~~~ asn2ff6.c: In function 'AddExtraAccessions': asn2ff6.c:3498:20: warning: variable 'ncbi' set but not used [-Wunused-but-set-variable] Boolean /*UNUSED*/ncbi = FALSE; ^~~~ At top level: asn2ff6.c:2883:13: warning: 'ValidateOtherAccession' defined but not used [-Wunused-function] static Int2 ValidateOtherAccession(CharPtr new_buf, CharPtr orig_buf) ^~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from asn2ff6.c:347: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ asn2ff6.c: In function 'ValidateLocus': asn2ff6.c:2786:44: warning: 'exp' may be used uninitialized in this function [-Wmaybe-uninitialized] Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits; ^~~ asn2ff6.c: In function 'MakeBaseLocusAwp': asn2ff6.c:3070:49: warning: 'num_of_digits' may be used uninitialized in this function [-Wmaybe-uninitialized] Int2 index, length, base_locus_max, name_len, num_of_digits, num_seg; ^~~~~~~~~~~~~ asn2ff6.c: In function 'GetLocusPartsAwp': asn2ff6.c:3313:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(gbp->locus, "%-16s", buf_acc); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 17 and 26 bytes into a destination of size 25 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3311:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(gbp->locus, "%-10s", buf_acc); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 11 and 26 bytes into a destination of size 25 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3270:33: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(gbp->locus, "%-16s", buf_acc); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 17 and 26 bytes into a destination of size 25 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2ff6.c:3268:33: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(gbp->locus, "%-10s", buf_acc); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ff6.h:134, from asn2ff6.c:347: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 11 and 26 bytes into a destination of size 25 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb1.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2gnb1.c: In function 'IsWholeWordSubstr': asn2gnb1.c:2202:19: warning: variable 'right' set but not used [-Wunused-but-set-variable] Boolean left, right; ^~~~~ asn2gnb1.c: In function 's_LocusGetBaseName': asn2gnb1.c:2350:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ asn2gnb1.c:2352:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' newLength = segNameLen - deleteChars; ^~~~~~~~~ asn2gnb1.c: In function 'DoOneSection': asn2gnb1.c:2522:24: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] IntAsn2gbSectPtr iasp; ^~~~ asn2gnb1.c:2514:24: warning: variable 'bkmask' set but not used [-Wunused-but-set-variable] BlockMask bkmask; ^~~~~~ asn2gnb1.c: In function 'Count2Seg': asn2gnb1.c:3438:18: warning: variable 'to' set but not used [-Wunused-but-set-variable] Int4 to; ^~ asn2gnb1.c:3436:18: warning: variable 'parent' set but not used [-Wunused-but-set-variable] BioseqPtr parent; ^~~~~~ asn2gnb1.c: At top level: asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] static ModeFlags flagTable [] = { ^ asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces] asn2gnb1.c: In function 'SeqIdWriteForTable': asn2gnb1.c:5808:13: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] pdb = NULL, general = NULL, gi = NULL; ^~~ asn2gnb1.c:5807:40: warning: variable 'patent' set but not used [-Wunused-but-set-variable] SeqIdPtr accn = NULL, local = NULL, patent = NULL, ^~~~~~ In file included from ../include/ncbi.h:58, from asn2gnb1.c:43: asn2gnb1.c: In function 'DoImmediateFormat': ../include/ncbistd.h:255:22: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] #define MAX(a,b) ((a)>=(b)?(a):(b)) ^~ asn2gnb1.c:6951:19: note: in expansion of macro 'MAX' max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); ^~~ asn2gnb1.c:6930:20: warning: variable 'is_www' set but not used [-Wunused-but-set-variable] Boolean is_www; ^~~~~~ In file included from ../include/ncbi.h:58, from asn2gnb1.c:43: asn2gnb1.c: In function 'asn2gnbk_format': ../include/ncbistd.h:255:22: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] #define MAX(a,b) ((a)>=(b)?(a):(b)) ^~ asn2gnb1.c:7072:19: note: in expansion of macro 'MAX' max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); ^~~ asn2gnb1.c: In function 'asn2gnbk_cleanup': asn2gnb1.c:7118:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] IntAsn2gbSectPtr iasp; ^~~~ asn2gnb1.c: In function 'SeqEntryToGnbk': asn2gnb1.c:7304:22: warning: variable 'userdata' set but not used [-Wunused-but-set-variable] Pointer userdata = NULL; ^~~~~~~~ asn2gnb1.c:7299:22: warning: variable 'gbseq' set but not used [-Wunused-but-set-variable] GBSeqPtr gbseq = NULL; ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb1.c:58: asn2gnb1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ asn2gnb1.c: In function 'PrintFtableIntervals': asn2gnb1.c:5463:28: warning: ' ' directive writing 1 byte into a region of size between 0 and 62 [-Wformat-overflow=] sprintf (str, "%s\t%s\t%s\n", str1, str2, label); ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb1.c:43: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 66) into a destination of size 64 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb1.c:5487:30: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf (str, "%s\t%s\n", str1, str2); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb1.c:43: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 65 bytes into a destination of size 64 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2gnb2.c: In function 's_LocusAddSuffix': asn2gnb2.c:217:11: warning: variable 'ch' set but not used [-Wunused-but-set-variable] Char ch; ^~ asn2gnb2.c: In function 'AddLocusBlock': asn2gnb2.c:1361:66: warning: suggest parentheses around '&&' within '||' [-Wparentheses] } else if ((moltype >= 2 && moltype <= 8) || moltype >= 10 && moltype <= 11) { ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ asn2gnb2.c: In function 'IsSuccessor': asn2gnb2.c:1742:15: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (accp != '\0' && prevp != '\0') { ^~ asn2gnb2.c:1742:10: note: did you mean to dereference the pointer? while (accp != '\0' && prevp != '\0') { ^ asn2gnb2.c:1742:34: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (accp != '\0' && prevp != '\0') { ^~ asn2gnb2.c:1742:28: note: did you mean to dereference the pointer? while (accp != '\0' && prevp != '\0') { ^ asn2gnb2.c: In function 'IsProjectAccn': asn2gnb2.c:1767:38: warning: comparison between pointer and zero character constant [-Wpointer-compare] for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue; ^~ asn2gnb2.c:1767:34: note: did you mean to dereference the pointer? for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue; ^ asn2gnb2.c: In function 'AddDblinkBlock': asn2gnb2.c:2892:22: warning: variable 'parentID' set but not used [-Wunused-but-set-variable] Int4 parentID; ^~~~~~~~ asn2gnb2.c: In function 'AddSPBlock': asn2gnb2.c:3409:14: warning: implicit declaration of function 'PrintDate'; did you mean 'truncate'? [-Wimplicit-function-declaration] string = PrintDate (spb->created); ^~~~~~~~~ truncate asn2gnb2.c:3409:12: warning: assignment to 'Nlm_CharPtr' {aka 'char *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] string = PrintDate (spb->created); ^ asn2gnb2.c:3417:12: warning: assignment to 'Nlm_CharPtr' {aka 'char *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] string = PrintDate (spb->sequpd); ^ asn2gnb2.c:3424:12: warning: assignment to 'Nlm_CharPtr' {aka 'char *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] string = PrintDate (spb->annotupd); ^ asn2gnb2.c: In function 'AddSourceOrganismBlock': asn2gnb2.c:5056:22: warning: variable 'common' set but not used [-Wunused-but-set-variable] CharPtr common; ^~~~~~ asn2gnb2.c: In function 'GetRefsOnBioseq': asn2gnb2.c:5893:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ asn2gnb2.c:5890:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] Boolean split; ^~~~~ asn2gnb2.c:5884:22: warning: variable 'right' set but not used [-Wunused-but-set-variable] Int4 right; ^~~~~ asn2gnb2.c:5878:22: warning: variable 'left' set but not used [-Wunused-but-set-variable] Int4 left; ^~~~ asn2gnb2.c: In function 'AddLocusBlock': asn2gnb2.c:239:24: warning: '%d' directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] sprintf(segCountStr,"%d",awp->numsegs); ^~ asn2gnb2.c:239:23: note: directive argument in the range [2, 2147483647] sprintf(segCountStr,"%d",awp->numsegs); ^~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:244:25: warning: '%0*d' directive writing between 1 and 32768 bytes into a region of size 4 [-Wformat-overflow=] sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg); ^~~~ asn2gnb2.c:244:23: note: directive argument in the range [0, 65535] sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg); ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 32770 bytes into a destination of size 5 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:246:24: warning: '%0*d' directive writing between 1 and 32768 bytes into a region of size 5 [-Wformat-overflow=] sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg); ^~~~ asn2gnb2.c:246:23: note: directive argument in the range [0, 65535] sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg); ^~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 5 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1514:48: warning: '" title="Jump to the comment...' directive writing 69 bytes into a region of size between 66 and 106 [-Wformat-overflow=] sprintf (sect, "
  • Comment
    • ", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 92 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1518:46: warning: '" title="Jump to the feature...' directive writing 68 bytes into a region of size between 66 and 106 [-Wformat-overflow=] sprintf (sect, "
  • Features
    • ", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 91 and 131 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1527:117: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf (sect, "
  • Genome
    • ", ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 89 and 129 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1532:117: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf (sect, "
  • Contig
    • ", ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 89 and 129 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1579:81: warning: '%s' directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=] sprintf (sect, "
  • Next
    • ", (long) nextGi, seqid); ^~ ~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 67 and 203 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1587:81: warning: '%s' directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=] sprintf (sect, "
  • Next
    • ", (long) awp->nextGi, seqid); ^~ ~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 67 and 204 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1600:81: warning: '%s' directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=] sprintf (sect, "
  • Previous
    • ", (long) prevGi, seqid); ^~ ~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 71 and 207 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:1608:81: warning: '%s' directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=] sprintf (sect, "
  • Previous
    • ", (long) awp->prevGi, seqid); ^~ ~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb2.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 71 and 208 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb3.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2gnb3.c: In function 'GetStatusForRefTrack': asn2gnb3.c:796:22: warning: variable 'urf' set but not used [-Wunused-but-set-variable] UserFieldPtr ufp, urf = NULL; ^~~ asn2gnb3.c: In function 'AddCommentBlock': asn2gnb3.c:2656:22: warning: variable 'is_wgs' set but not used [-Wunused-but-set-variable] Boolean is_wgs = FALSE; ^~~~~~ asn2gnb3.c: In function 'GetSourcesOnBioseq': asn2gnb3.c:5472:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ asn2gnb3.c:5470:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] Int4 start; ^~~~~ asn2gnb3.c:5468:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] Boolean split; ^~~~~ asn2gnb3.c: In function 'AddSourceFeatBlock': asn2gnb3.c:5989:22: warning: unused variable 'sip' [-Wunused-variable] SeqIdPtr sip; ^~~ asn2gnb3.c: In function 'GetFeatsOnCdsProduct': asn2gnb3.c:6446:22: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] Boolean isRefSeq; ^~~~~~~~ asn2gnb3.c: In function 'GetRemoteFeatsOnCdsProduct': asn2gnb3.c:6595:20: warning: variable 'lastsfp' set but not used [-Wunused-but-set-variable] SeqFeatPtr lastsfp; ^~~~~~~ asn2gnb3.c:6594:20: warning: variable 'lastsap' set but not used [-Wunused-but-set-variable] SeqAnnotPtr lastsap; ^~~~~~~ asn2gnb3.c:6593:20: warning: variable 'lastright' set but not used [-Wunused-but-set-variable] Int4 lastright; ^~~~~~~~~ asn2gnb3.c:6592:20: warning: variable 'lastleft' set but not used [-Wunused-but-set-variable] Int4 lastleft; ^~~~~~~~ asn2gnb3.c:6591:20: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable] Boolean isRefSeq; ^~~~~~~~ asn2gnb3.c: In function 'GetFeatsOnBioseq': asn2gnb3.c:6895:22: warning: variable 'start' set but not used [-Wunused-but-set-variable] Int4 start; ^~~~~ asn2gnb3.c:6866:22: warning: variable 'icp' set but not used [-Wunused-but-set-variable] IntCdsBlockPtr icp; ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb3.c:57: asn2gnb3.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ asn2gnb3.c:1582:16: warning: 'nsWGSGapsString' defined but not used [-Wunused-variable] static CharPtr nsWGSGapsString = "The strings of n's in this record represent gaps between contigs or uncallable bases."; ^~~~~~~~~~~~~~~ asn2gnb3.c:1581:16: warning: 'nsAreGapsString' defined but not used [-Wunused-variable] static CharPtr nsAreGapsString = "The strings of n's in this record represent gaps between contigs, and the length of each string corresponds to the length of the gap."; ^~~~~~~~~~~~~~~ asn2gnb3.c: In function 'AddCommentBlock': asn2gnb3.c:3429:29: warning: 'nm' may be used uninitialized in this function [-Wmaybe-uninitialized] if (IS_protdb_accession (nm)) { ^~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb4.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2gnb4.c: In function 'FormatFeatureBlockQuals': asn2gnb4.c:3723:50: warning: "/*" within comment [-Wcomment] StringChr (str + 1, '(') == NULL /* && StringChr (str, ',') != NULL */) { asn2gnb4.c:3101:24: warning: variable 'split' set but not used [-Wunused-but-set-variable] Boolean split; ^~~~~ asn2gnb4.c:3042:24: warning: variable 'at_end' set but not used [-Wunused-but-set-variable] Boolean at_end = FALSE; ^~~~~~ asn2gnb4.c: In function 'FF_asn2gb_www_featkey_Ex': asn2gnb4.c:5325:16: warning: variable 'prefix' set but not used [-Wunused-but-set-variable] CharPtr prefix = "?"; ^~~~~~ asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:6572:22: warning: variable 'split' set but not used [-Wunused-but-set-variable] Boolean split; ^~~~~ In file included from ../include/ncbi.h:58, from asn2gnb4.c:42: asn2gnb4.c: In function 'DoImmediateRemoteFeatureFormat': ../include/ncbistd.h:255:22: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] #define MAX(a,b) ((a)>=(b)?(a):(b)) ^~ asn2gnb4.c:8796:19: note: in expansion of macro 'MAX' max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); ^~~ asn2gnb4.c: In function 'FormatFeatureQuals': ../include/ncbistd.h:255:22: warning: comparison between 'enum ' and 'enum ' [-Wenum-compare] #define MAX(a,b) ((a)>=(b)?(a):(b)) ^~ asn2gnb4.c:8869:19: note: in expansion of macro 'MAX' max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR)); ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb4.c:57: asn2gnb4.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ asn2gnb4.c: In function 'FormatFeatureBlockEx': asn2gnb4.c:7695:26: warning: 'sep' may be used uninitialized in this function [-Wmaybe-uninitialized] oldscope = SeqEntrySetScope (sep); ^~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb5.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2gnb5.c: In function 'FormatCitBookArt': asn2gnb5.c:2108:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] ValNodePtr vnp; ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb5.c:57: asn2gnb5.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ asn2gnb5.c: In function 'FormatReferenceBlock': asn2gnb5.c:2553:22: warning: '%ld' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] sprintf(buf,"%s%ld ", " ", (long) pat_seqid); ^~~ asn2gnb5.c:2553:19: note: directive argument in the range [1, 2147483647] sprintf(buf,"%s%ld ", " ", (long) pat_seqid); ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb5.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 13 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb5.c:2550:22: warning: '%ld' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); ^~~ asn2gnb5.c:2550:19: note: directive argument in the range [1, 2147483647] sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", "); ^~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb5.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 14 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from asn2gnb6.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2gnb6.c: In function 'FlatLocElement': asn2gnb6.c:2546:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (sintp->to > 0 && ~~~~~~~~~~~~~~^~ (sintp->to != sintp->from || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sintp->if_from != NULL || ~~~~~~~~~~~~~~~~~~~~~~~~~ sintp->if_to != NULL) || ~~~~~~~~~~~~~~~~~~~~~ asn2gnb6.c: In function 'FormatContigBlock': asn2gnb6.c:5701:20: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable] DeltaSeqPtr dspnext; ^~~~~~~ asn2gnb6.c: In function 'ProcessGapSpecialFormat': asn2gnb6.c:6041:13: warning: unused variable 'sip' [-Wunused-variable] SeqIdPtr sip; ^~~ asn2gnb6.c: In function 'FormatSequenceBlock': asn2gnb6.c:6168:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable] IntAsn2gbSectPtr iasp; ^~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2gnb6.c:57: asn2gnb6.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ asn2gnb6.c:76:16: warning: 'link_lat_lon' defined but not used [-Wunused-variable] static CharPtr link_lat_lon = "https://www.ncbi.nlm.nih.gov/projects/Sequin/latlonview.html?"; ^~~~~~~~~~~~ asn2gnb6.c: In function 'FormatBasecountBlock': asn2gnb6.c:5365:58: warning: '%ld' directive writing between 1 and 11 bytes into a region of size between 10 and 50 [-Wformat-overflow=] sprintf (buf, "Sequence %ld BP; %ld A; %ld C; %ld G; %ld T; %ld other;", ^~~ asn2gnb6.c:5365:19: note: directive argument in the range [-2147483648, 2147483647] sprintf (buf, "Sequence %ld BP; %ld A; %ld C; %ld G; %ld T; %ld other;", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb6.c:5365:19: note: directive argument in the range [-2147483648, 2147483647] In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from asn2gnb6.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 44 and 104 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ftusrstr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ftusrstr.c:34: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfeat.c gbfeat.c: In function 'CkLabelType': gbfeat.c:1465:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses] for (str = bptr; *str != '\0' && IS_ALPHA(*str) || IS_DIGIT(*str) s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbftglob.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbparint.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/parsegb.h:57, from gbparint.c:102: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gbparint.c: In function 'Nlm_gbparselex': gbparint.c:2134:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (*current_col != '\0') ^ gbparint.c: In function 'Nlm_gbparselex_ver': gbparint.c:2520:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (*current_col != '\0') ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpars.c utilpars.c:112:39: warning: missing braces around initializer [-Wmissing-braces] ParFlat_AA_array[ParFlat_TOTAL_AA] = { ^ "Ala", 'A', { } "Asx", 'B', { } "Cys", 'C', { } "Asp", 'D', { } "Glu", 'E', { } "Phe", 'F', { } "Gly", 'G', { } "His", 'H', { } "Ile", 'I', { } "Xle", 'J', /* was - notice no 'J', breaks naive meaning of index -Karl */ { } "Lys", 'K', { } "Leu", 'L', { } "Met", 'M', { } "Asn", 'N', { } "Pyl", 'O', /* was - no 'O' */ { } "Pro", 'P', { } "Gln", 'Q', { } "Arg", 'R', { } "Ser", 'S', { } "Thr", 'T', { } "Val", 'V', { } "Trp", 'W', { } "Sec", 'U', /* was - not in iupacaa */ { } "Xxx", 'X', { } "Tyr", 'Y', { } "Glx", 'Z', { } "TERM", '*', /* not in iupacaa */ /*changed by Tatiana 06.07.95?`*/ { } "OTHER", 'X'}; { } s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpub.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from utilpub.c:13: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ utilpub.c: In function 'FindCit': utilpub.c:998:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable] ImpFeatPtr /*UNUSED*/ifp; ^~~ utilpub.c: In function 'ChangeCitQual': utilpub.c:1053:53: warning: variable 'pub' set but not used [-Wunused-but-set-variable] ValNodePtr vnp, pubset = NULL, pub_min, /*UNUSED*/pub; ^~~ utilpub.c:1052:34: warning: variable 'descr' set but not used [-Wunused-but-set-variable] ValNodePtr PNTR vnpp, /*UNUSED*/descr; ^~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ffprint.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/asn2ffg.h:200, from ../include/asn2ffp.h:48, from ffprint.c:127: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ffprint.c: In function 'FFBSPrint': ffprint.c:347:19: warning: unused variable 'byte_sp' [-Wunused-variable] ByteStorePtr byte_sp = NULL; ^~~~~~~ At top level: ffprint.c:420:16: warning: 'ff_print_insert' defined but not used [-Wunused-function] static CharPtr ff_print_insert(CharPtr str, CharPtr ins) ^~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from ffprint.c:127: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wprint.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from wprint.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ wprint.c: In function 'LocPrintGenome': wprint.c:1696:14: warning: unused variable 'sep' [-Wunused-variable] SeqEntryPtr sep = NULL; ^~~ wprint.c:1695:25: warning: unused variable 'b' [-Wunused-variable] BioseqPtr bsp = NULL, b = NULL; ^ wprint.c:1695:13: warning: unused variable 'bsp' [-Wunused-variable] BioseqPtr bsp = NULL, b = NULL; ^~~ wprint.c:1692:34: warning: unused variable 'temp' [-Wunused-variable] static Char buf[14], val[166], temp[166]; ^~~~ At top level: wprint.c:1692:34: warning: 'temp' defined but not used [-Wunused-variable] wprint.c:79:13: warning: 'link_gdb_map' defined but not used [-Wunused-variable] static Char link_gdb_map[MAX_WWWBUF]; ^~~~~~~~~~~~ wprint.c:77:13: warning: 'link_pir' defined but not used [-Wunused-variable] static Char link_pir[MAX_WWWBUF]; ^~~~~~~~ In file included from ../include/asn2ff6.h:142, from ../include/asn2ffp.h:50, from wprint.c:51: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ wprint.c: In function 'PrintDate': wprint.c:188:20: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(day, "%d", (int) (date -> data[3] )); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from wprint.c:46: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 4 bytes into a destination of size 3 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ wprint.c: In function 'www_db_xref': wprint.c:969:20: warning: '%d' directive writing between 1 and 6 bytes into a region of size between 4 and 9 [-Wformat-overflow=] sprintf(id, "%d%d", id1, id2); ^~ wprint.c:969:17: note: directive argument in the range [-32768, 32767] sprintf(id, "%d%d", id1, id2); ^~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from wprint.c:46: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 13 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from wprint.c:46: wprint.c: In function 'www_xref': ../include/ncbistr.h:331:19: warning: 'prefix' may be used uninitialized in this function [-Wmaybe-uninitialized] #define StringLen Nlm_StringLen ^~~~~~~~~~~~~ wprint.c:1358:19: note: 'prefix' was declared here CharPtr s, link, prefix, ss; ^~~~~~ In file included from ../include/ncbi.h:62, from wprint.c:46: ../include/ncbistr.h:331:19: warning: 'link' may be used uninitialized in this function [-Wmaybe-uninitialized] #define StringLen Nlm_StringLen ^~~~~~~~~~~~~ wprint.c:1358:13: note: 'link' was declared here CharPtr s, link, prefix, ss; ^~~~ In file included from ../include/ncbi.h:62, from wprint.c:46: wprint.c: In function 'www_xref_button': ../include/ncbistr.h:331:19: warning: 'prefix' may be used uninitialized in this function [-Wmaybe-uninitialized] #define StringLen Nlm_StringLen ^~~~~~~~~~~~~ wprint.c:1398:19: note: 'prefix' was declared here CharPtr s, link, prefix, ss; ^~~~~~ In file included from ../include/ncbi.h:62, from wprint.c:46: ../include/ncbistr.h:331:19: warning: 'link' may be used uninitialized in this function [-Wmaybe-uninitialized] #define StringLen Nlm_StringLen ^~~~~~~~~~~~~ wprint.c:1398:13: note: 'link' was declared here CharPtr s, link, prefix, ss; ^~~~ wprint.c: In function 'PrintSPBlock': wprint.c:1570:6: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized] AddLink(s); ^~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF satutil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/satutil.h:12, from satutil.c:87: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ satutil.c: In function 'CopyFeatureFromAlign': satutil.c:1011:10: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] Boolean check_gap; ^~~~~~~~~ At top level: satutil.c:168:16: warning: 'bk_map_one_location' defined but not used [-Wunused-function] static Boolean bk_map_one_location(SeqLocPtr source_loc, SeqAlignPtr align, SeqIdPtr target_sip, Boolean check_gap, Int4Ptr r_start, Int4Ptr r_stop, SeqLocPtr PNTR head_slp) ^~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmgr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from seqmgr.c:53: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ seqmgr.c: In function 'SeqEntrySetScope': seqmgr.c:311:13: warning: variable 'found' set but not used [-Wunused-but-set-variable] Boolean found; ^~~~~ seqmgr.c: In function 'ClearBioseqFindCache': seqmgr.c:897:14: warning: variable 'smp' set but not used [-Wunused-but-set-variable] SeqMgrPtr smp; ^~~ seqmgr.c: In function 'GetUniGeneIDForSeqId': seqmgr.c:3676:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(StringCmp(db_tag->db, "BSNR") == 0) ^~ seqmgr.c:3678:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(StringCmp(db_tag->db, "HUMGEN") == 0) ^~ seqmgr.c: In function 'SeqMgrGetExtraDataForOmdp': seqmgr.c:3736:14: warning: variable 'omp' set but not used [-Wunused-but-set-variable] ObjMgrPtr omp; ^~~ seqmgr.c: In function 'CheckForTransSplice': seqmgr.c:5657:14: warning: variable 'prev' set but not used [-Wunused-but-set-variable] SeqLocPtr prev, tmp; ^~~~ seqmgr.c: In function 'SeqEntryAsnOut': seqmgr.c:11799:41: warning: variable 'aopp_desc' set but not used [-Wunused-but-set-variable] AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL; ^~~~~~~~~ seqmgr.c:11799:23: warning: variable 'aopp_feat' set but not used [-Wunused-but-set-variable] AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL; ^~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from seqmgr.c:63: seqmgr.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmgr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from objmgr.c:51: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objmgr.c: In function 'ObjMgrReapOne': objmgr.c:2727:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (omp->reaping) /* protect against recursion caused by ObjMgrSendMsg */ ^~ objmgr.c:2730:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' lowest = UINT4_MAX; ^~~~~~ objmgr.c: In function 'ObjMgrDeSelectStructFunc': objmgr.c:3767:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (next != NULL) ^~ objmgr.c:3770:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' ObjMgrSendDeSelMsg (omp, ssp->entityID, ssp->itemID, ssp->itemtype, ssp->regiontype, ssp->region); ^~~~~~~~~~~~~~~~~~ objmgr.c: In function 'ObjMgrSelectFunc2': objmgr.c:4031:22: warning: variable 'retval' set but not used [-Wunused-but-set-variable] Boolean retval = FALSE; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gather.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from gather.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gather.c: In function 'AttachDataProc': gather.c:4827:30: warning: variable 'into_seqentry' set but not used [-Wunused-but-set-variable] Boolean no_good = FALSE, into_seqentry = FALSE; ^~~~~~~~~~~~~ gather.c: In function 'GatherSeqFeat': gather.c:1570:44: warning: 'newid' may be used uninitialized in this function [-Wmaybe-uninitialized] tslp = SeqLocReMap(newid, slp, cbp->loc, offset, rev); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gather.c:1530:86: warning: 'max_interval' may be used uninitialized in this function [-Wmaybe-uninitialized] lrdp = (GatherRangePtr)MemNew((size_t)((max_interval + 20) * sizeof(GatherRange))); ^ In file included from ../include/ncbi.h:59, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/gather.h:169, from gather.c:44: ../include/ncbimem.h:232:23: warning: 'lrdp' may be used uninitialized in this function [-Wmaybe-uninitialized] #define MemFree Nlm_MemFree ^~~~~~~~~~~ gather.c:1404:38: note: 'lrdp' was declared here GatherRangePtr rdp = NULL, trdp, lrdp; ^~~~ gather.c: In function 'gather_align_data': gather.c:2280:11: warning: 'h_stop' may be used uninitialized in this function [-Wmaybe-uninitialized] if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/ ^ gather.c:2280:12: warning: 'h_start' may be used uninitialized in this function [-Wmaybe-uninitialized] if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gather.c:2219:15: warning: 'master_loc' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqLocPtr master_loc, m_loc; ^~~~~~~~~~ gather.c:2470:90: warning: 'mag_val' may be used uninitialized in this function [-Wmaybe-uninitialized] stop = inverse ? SeqLocLen(master_loc) * mag_val : SeqLocLen(master_loc)/mag_val; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gather.c: In function 'GatherBioseqFunc': gather.c:3307:53: warning: 'tlen' may be used uninitialized in this function [-Wmaybe-uninitialized] rdp->right = offset + tlen - 1; ~~~~~~~^~~~~~ gather.c:3298:40: warning: 'trunc_r' may be used uninitialized in this function [-Wmaybe-uninitialized] if (trunc_r) ^ gather.c:3293:39: warning: 'trunc_l' may be used uninitialized in this function [-Wmaybe-uninitialized] if (trunc_l) ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accmmdbs.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from accmmdbs.c:120: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acccn3ds.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from acccn3ds.c:62: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lsqfetch.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/lsqfetch.h:110, from lsqfetch.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ lsqfetch.c: In function 'ChangeLocalToGenbank': lsqfetch.c:1403:21: warning: '%s' directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=] sprintf (tmp, "gb|%s", id); ^~ ~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/lsqfetch.h:110, from lsqfetch.c:44: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 44 bytes into a destination of size 41 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF findrepl.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from findrepl.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF codon.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/codon.h:61, from codon.c:2: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ codon.c: In function 'make_cds_paragraph': codon.c:262:7: warning: variable 'space_len' set but not used [-Wunused-but-set-variable] Int4 space_len, i; ^~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzcoll.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from jzcoll.c:54: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ jzcoll.c: In function 'load_default_matrix': jzcoll.c:99:6: warning: array subscript has type 'char' [-Wchar-subscripts] ss[pchars[i]][pchars[j]] = webb_blosum62[i][j]; ^ jzcoll.c:99:17: warning: array subscript has type 'char' [-Wchar-subscripts] ss[pchars[i]][pchars[j]] = webb_blosum62[i][j]; ^ jzcoll.c:101:5: warning: array subscript has type 'char' [-Wchar-subscripts] ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4; ^ jzcoll.c:101:31: warning: array subscript has type 'char' [-Wchar-subscripts] ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4; ^ jzcoll.c: In function 'GetUseThisGi': jzcoll.c:143:10: warning: unused variable 'retval' [-Wunused-variable] Boolean retval=FALSE; ^~~~~~ jzcoll.c: In function 'buffer_for_feature': jzcoll.c:514:7: warning: unused variable 'i' [-Wunused-variable] Int2 i=0; ^ jzcoll.c: In function 'ProcessTextInsertion': jzcoll.c:878:7: warning: variable 'last_ins' set but not used [-Wunused-but-set-variable] Int4 last_ins; ^~~~~~~~ jzcoll.c: In function 'satcollfunc': jzcoll.c:1723:12: warning: variable 'head' set but not used [-Wunused-but-set-variable] SeqLocPtr head; ^~~~ jzcoll.c:1721:8: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ jzcoll.c:1720:7: warning: variable 'current_pos' set but not used [-Wunused-but-set-variable] Int4 current_pos; ^~~~~~~~~~~ jzcoll.c:1714:12: warning: unused variable 'slp' [-Wunused-variable] SeqLocPtr slp = NULL; ^~~ jzcoll.c: In function 'coll_align_data': jzcoll.c:2631:20: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf(buf, "%d", gilist->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~~~~ %ld jzcoll.c: In function 'collect_anpnode_with_option': jzcoll.c:3053:13: warning: unused variable 'prev' [-Wunused-variable] ValNodePtr prev = NULL; ^~~~ jzcoll.c: In function 'ck_seqfeat_extra': jzcoll.c:3414:10: warning: unused variable 'has_gb' [-Wunused-variable] Boolean has_gb = FALSE, has_med = FALSE; ^~~~~~ jzcoll.c: In function 'collseqfunc': jzcoll.c:3768:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(omtp->labelfunc !=NULL) ^~ jzcoll.c:3770:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' fnp->landmark = check_feature_for_landmark(chp->thislabel, chp->gdata, sfp, gcp, chp->priority); ^~~ jzcoll.c: In function 'load_open_close_sts_mark': jzcoll.c:4010:10: warning: variable 'collected' set but not used [-Wunused-but-set-variable] Boolean collected = FALSE; ^~~~~~~~~ jzcoll.c: In function 'FeatNodeCompProc': jzcoll.c:4225:20: warning: variable 'gr2' set but not used [-Wunused-but-set-variable] GatherRange gr1, gr2; ^~~ jzcoll.c:4225:15: warning: variable 'gr1' set but not used [-Wunused-but-set-variable] GatherRange gr1, gr2; ^~~ At top level: jzcoll.c:2316:16: warning: 'stop_collecting_alignment' defined but not used [-Wunused-function] static Boolean stop_collecting_alignment(ValNodePtr anp_list, Int4 max_num) ^~~~~~~~~~~~~~~~~~~~~~~~~ jzcoll.c:1654:16: warning: 'collect_sequence_label' defined but not used [-Wunused-function] static Boolean collect_sequence_label(Uint1 format) ^~~~~~~~~~~~~~~~~~~~~~ jzcoll.c: In function 'load_text': jzcoll.c:421:41: warning: 'smtp' may be used uninitialized in this function [-Wmaybe-uninitialized] stdaa_res = SeqMapTableConvert(smtp, m_res); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzmisc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/jzmisc.h:86, from jzmisc.c:23: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF maputil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from maputil.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ maputil.c: In function 'load_gene_list': maputil.c:690:8: warning: variable 'val' set but not used [-Wunused-but-set-variable] Uint1 val; ^~~ maputil.c: In function 'gmarkfunc': maputil.c:985:13: warning: variable 'syn' set but not used [-Wunused-but-set-variable] ValNodePtr syn = NULL; ^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mconsist.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/sequtil.h:43, from ../include/mconsist.h:4, from mconsist.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macroapi.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from macroapi.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ macroapi.c: In function 'AdvancedStringCompare': macroapi.c:4463:23: warning: variable 'init_target_match_len' set but not used [-Wunused-but-set-variable] Int4 len1, len2, init_target_match_len = 0, target_match_len = 0; ^~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function 'RemoveGBQualMatch': macroapi.c:6981:27: warning: variable 'does_match' set but not used [-Wunused-but-set-variable] Boolean rval = FALSE, does_match, do_remove; ^~~~~~~~~~ macroapi.c: In function 'ParseCodonsRecognizedFromCommaDelimitedList': macroapi.c:7726:41: warning: pointer targets in passing argument 1 of 'ExpandWobbleCodon' differ in signedness [-Wpointer-sign] wobble_list = ExpandWobbleCodon(codon); ^~~~~ macroapi.c:7636:19: note: expected 'Nlm_CharPtr' {aka 'char *'} but argument is of type 'Nlm_Uint1 *' {aka 'unsigned char *'} static ValNodePtr ExpandWobbleCodon (CharPtr codon) ^~~~~~~~~~~~~~~~~ macroapi.c: In function 'GetQualFromFeatureAnyType': macroapi.c:8537:8: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (str == NULL ~~~~~~~~~~~ && (field->choice == FeatQualChoice_legal_qual && field->data.intvalue == Feat_qual_legal_pseudo) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:8681:23: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", vnp->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~ %ld macroapi.c: In function 'SetNameInPrimerList': macroapi.c:10682:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] PCRPrimerPtr pp, prev_pp = NULL; ^~~~~~~ macroapi.c: In function 'SetSeqInPrimerList': macroapi.c:10703:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable] PCRPrimerPtr pp, prev_pp = NULL; ^~~~~~~ macroapi.c: In function 'GetGenomeProjectIdFromBioseq': macroapi.c:12881:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", ufp->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~ %ld macroapi.c: In function 'RemoveGenomeProjectIdFromBioseq': macroapi.c:12916:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", ufp->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~ %ld macroapi.c: In function 'SetGenomeProjectIdOnBioseq': macroapi.c:12957:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", ufp->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~ %ld macroapi.c: In function 'GetPubFieldFromPub': macroapi.c:15043:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (str, "%d", the_pub->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~~~~~ %ld macroapi.c: In function 'GetCitListsForSeqEntry': macroapi.c:15825:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] Uint2 entityID; ^~~~~~~~ macroapi.c:15823:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable] Boolean okay; ^~~~ macroapi.c: In function 'GetPubclassQualFromPub': macroapi.c:18324:11: warning: unused variable 'str' [-Wunused-variable] CharPtr str = NULL; ^~~ macroapi.c: In function 'GetPubMLStatus': macroapi.c:18681:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable] CitSubPtr csp; ^~~ macroapi.c: In function 'CollectDBLinkObjectsForApply': macroapi.c:20029:72: warning: unused variable 'tmp_tail' [-Wunused-variable] ValNodePtr target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp; ^~~~~~~~ macroapi.c:20029:55: warning: unused variable 'tmp_list' [-Wunused-variable] ValNodePtr target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp; ^~~~~~~~ macroapi.c: In function 'DoConvertActionToObjectListEx': macroapi.c:20844:20: warning: unused variable 'already_added' [-Wunused-variable] Boolean already_added, field_change; ^~~~~~~~~~~~~ macroapi.c: In function 'ApplyPartial5SetActionToSeqFeat': macroapi.c:25749:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ macroapi.c: In function 'ApplyPartial3SetActionToSeqFeat': macroapi.c:25872:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ macroapi.c: In function 'ApplyPartialBothSetActionToSeqFeat': macroapi.c:25939:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable] Uint1 strand; ^~~~~~ macroapi.c: In function 'FindPosBeforeFeat': macroapi.c:26236:15: warning: variable 'regulator' set but not used [-Wunused-but-set-variable] SeqFeatPtr regulator = NULL, candidate; ^~~~~~~~~ macroapi.c: In function 'PerformAutofixInSeqEntry': macroapi.c:29471:8: warning: unused variable 'num_created' [-Wunused-variable] Int4 num_created = 0; ^~~~~~~~~~~ macroapi.c: In function 'AddFileDescriptors': macroapi.c:29871:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (sdp = SeqDescAsnRead (aip, NULL)) { ^~~ macroapi.c: In function 'ApplyMacroToSeqEntryExEx': macroapi.c:31907:28: warning: too many arguments for format [-Wformat-extra-args] fprintf (log_fp, "Instantiated protein titles\n", num); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function 'PreprocessAddDescriptorListMacro': macroapi.c:32020:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (sdp = SeqDescAsnRead (aip, NULL)) { ^~~ macroapi.c: In function 'FieldTypeFromString': macroapi.c:32370:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (ft == NULL && StringsAreEquivalent(str, "location") || StringsAreEquivalent(str, "genome")) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function 'SummarizeRemoveOutsideAction': macroapi.c:32939:11: warning: unused variable 'case_insensitive' [-Wunused-variable] CharPtr case_insensitive = " (case insensitive)"; ^~~~~~~~~~~~~~~~ macroapi.c: In function 'GetObjectTableForTabTable': macroapi.c:37508:63: warning: variable 'last' set but not used [-Wunused-but-set-variable] ValNodePtr obj_table = NULL, obj_row, last_obj = NULL, tmp, last = NULL; ^~~~ macroapi.c: In function 'FormatMultipleDestinationErrorMessage': macroapi.c:37987:21: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", vnp->data.intvalue + 1); ~^ ~~~~~~~~~~~~~~~~~~~~~~ %ld macroapi.c: In function 'CheckObjTableForExistingText': macroapi.c:38084:14: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] Uint2 entityID; ^~~~~~~~ macroapi.c: In function 'FixSuspectProductNamesInEntrezGene': macroapi.c:40352:18: warning: variable 'prefix' set but not used [-Wunused-but-set-variable] CharPtr prefix = NULL; ^~~~~~ In file included from ../include/tax3api.h:51, from macroapi.c:67: macroapi.c: At top level: ../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function] static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr )); ^~~~~~~~~~~~~~~ ../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function] static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~ ../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~ macroapi.c:37233:16: warning: 'IsFieldTypeProteinDesc' defined but not used [-Wunused-function] static Boolean IsFieldTypeProteinDesc (FieldTypePtr ft) ^~~~~~~~~~~~~~~~~~~~~~ macroapi.c:27097:13: warning: 'GetDescriptorTypeFromDescriptorChoice' defined but not used [-Wunused-function] static Int4 GetDescriptorTypeFromDescriptorChoice (Uint1 descriptor_choice) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:21298:13: warning: 'GetFieldsFromAECR' defined but not used [-Wunused-function] static void GetFieldsFromAECR (AECRActionPtr act, FieldTypePtr PNTR pField, ValNodePtr PNTR pFieldPair) ^~~~~~~~~~~~~~~~~ macroapi.c:20787:16: warning: 'NoFieldChange' defined but not used [-Wunused-function] static Boolean NoFieldChange (CharPtr new_val, ValNodePtr vnp, FieldTypePtr field_from, StringConstraintPtr scp, BatchExtraPtr batch_extra) ^~~~~~~~~~~~~ macroapi.c:16014:13: warning: 'InitBatchExtraForAECRActionAndObjectList' defined but not used [-Wunused-function] static void InitBatchExtraForAECRActionAndObjectList (BatchExtraPtr batch_extra, AECRActionPtr action, ValNodePtr object_list) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:10389:16: warning: 'HasMultiplePrimerSets' defined but not used [-Wunused-function] static Boolean HasMultiplePrimerSets (CharPtr value) ^~~~~~~~~~~~~~~~~~~~~ macroapi.c:5482:16: warning: 'DoesLocationMatchConstraint' defined but not used [-Wunused-function] static Boolean DoesLocationMatchConstraint (SeqLocPtr slp, LocationConstraintPtr lcp) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:4590:13: warning: 'TestAdvancedStringMatch' defined but not used [-Wunused-function] static void TestAdvancedStringMatch (void) ^~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:2806:13: warning: 'OriginFromOriginName' defined but not used [-Wunused-function] static Int4 OriginFromOriginName (CharPtr origin_name) ^~~~~~~~~~~~~~~~~~~~ macroapi.c:1200:16: warning: 'IsObjectAppropriateForFieldPair' defined but not used [-Wunused-function] static Boolean IsObjectAppropriateForFieldPair (Uint1 choice, Pointer data, FieldPairTypePtr fieldpair) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c: In function 'ReadNameListFromString': macroapi.c:14037:14: warning: 'ch_r1' may be used uninitialized in this function [-Wmaybe-uninitialized] *p_repl1 = ch_r1; ~~~~~~~~~^~~~~~~ macroapi.c:13946:11: note: 'ch_r1' was declared here Char ch_r1, ch_r2, ch_r3; ^~~~~ macroapi.c: In function 'AlsoChangeMrnaForObject': macroapi.c:20637:10: warning: 'mrna' may be used uninitialized in this function [-Wmaybe-uninitialized] if (mrna != NULL) { ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpedit.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from salpedit.c:2: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salpedit.c: In function 'SeqAlignInsert': salpedit.c:162:12: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] StdSegPtr ssp; ^~~ salpedit.c:161:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable] DenseDiagPtr ddp; ^~~ At top level: salpedit.c:4120:18: warning: 'build_slp_for_gcontig' defined but not used [-Wunused-function] static SeqLocPtr build_slp_for_gcontig (BioseqPtr gcontig_bsp, SeqIdPtr gcontig_sip) ^~~~~~~~~~~~~~~~~~~~~ salpedit.c:4073:17: warning: 'get_best_id' defined but not used [-Wunused-function] static SeqIdPtr get_best_id(BioseqPtr bsp) ^~~~~~~~~~~ salpedit.c:4046:16: warning: 'second_seq_has_gap' defined but not used [-Wunused-function] static Boolean second_seq_has_gap(BioseqPtr s_bsp) ^~~~~~~~~~~~~~~~~~ salpedit.c:4016:18: warning: 'dup_mul_locs' defined but not used [-Wunused-function] static SeqLocPtr dup_mul_locs(SeqLocPtr slp) ^~~~~~~~~~~~ salpedit.c:3968:18: warning: 'create_fake_bioseq' defined but not used [-Wunused-function] static BioseqPtr create_fake_bioseq(SeqLocPtr seq_loc, CharPtr fake_name) ^~~~~~~~~~~~~~~~~~ salpedit.c:3937:13: warning: 'reverse_seqloc' defined but not used [-Wunused-function] static void reverse_seqloc (SeqLocPtr s_loc) ^~~~~~~~~~~~~~ salpedit.c:3850:13: warning: 'save_output' defined but not used [-Wunused-function] static void save_output (SeqIdPtr sip, CharPtr f_name, SeqAlignPtr align) ^~~~~~~~~~~ salpedit.c:3836:13: warning: 'get_align_list_len' defined but not used [-Wunused-function] static Int4 get_align_list_len(SeqAlignPtr align) ^~~~~~~~~~~~~~~~~~ salpedit.c:2939:20: warning: 'open_annot' defined but not used [-Wunused-function] static SeqAnnotPtr open_annot(CharPtr f_name) ^~~~~~~~~~ salpedit.c:2835:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function] static void SeqAnnotWrite(SeqAlignPtr align) ^~~~~~~~~~~~~ salpedit.c:2653:16: warning: 'FigureAlignRange' defined but not used [-Wunused-function] static Boolean FigureAlignRange(SeqAlignPtr align, SeqLocPtr m_loc, SeqLocPtr s_loc) ^~~~~~~~~~~~~~~~ salpedit.c:1665:16: warning: 'free_diag_in_list' defined but not used [-Wunused-function] static Boolean free_diag_in_list(ValNodePtr ddp_list, DenseDiagPtr ddp) ^~~~~~~~~~~~~~~~~ salpedit.c:1605:16: warning: 'is_overlap' defined but not used [-Wunused-function] static Boolean is_overlap(BoolPtr status, Int4 from, Int4 len) ^~~~~~~~~~ salpedit.c:1560:13: warning: 'filter_wrong_orientation' defined but not used [-Wunused-function] static void filter_wrong_orientation (SeqAlignPtr align, Boolean same_orient) ^~~~~~~~~~~~~~~~~~~~~~~~ salpedit.c:1479:16: warning: 'filter_this_seg' defined but not used [-Wunused-function] static Boolean filter_this_seg (DenseDiagPtr curr, DenseDiagPtr PNTR h_list, Int2 order) ^~~~~~~~~~~~~~~ salpedit.c:1422:16: warning: 'convert_ddp_to_array' defined but not used [-Wunused-function] static Int4Ptr convert_ddp_to_array (ValNodePtr ddp_list, Uint1 strand, Int2 s_order, Int4Ptr p_num) ^~~~~~~~~~~~~~~~~~~~ salpedit.c:1387:14: warning: 'has_too_much_overlap' defined but not used [-Wunused-function] static Uint1 has_too_much_overlap (Int4 start_1, Int4 stop_1, Int4 start_2, Int4 stop_2) ^~~~~~~~~~~~~~~~~~~~ salpedit.c:1281:13: warning: 'attach_new_align' defined but not used [-Wunused-function] static void attach_new_align(SeqAlignPtr new_salp, SeqAlignPtr PNTR old) { ^~~~~~~~~~~~~~~~ salpedit.c:1169:20: warning: 'JZSeqAlignMerge' defined but not used [-Wunused-function] static SeqAlignPtr JZSeqAlignMerge(SeqAlignPtr f_align, SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr t_align) ^~~~~~~~~~~~~~~ salpedit.c:254:16: warning: 'is_gap_segment' defined but not used [-Wunused-function] static Boolean is_gap_segment(Int4Ptr c_starts, Int2 dim) ^~~~~~~~~~~~~~ salpedit.c:158:20: warning: 'SeqAlignInsert' defined but not used [-Wunused-function] static SeqAlignPtr SeqAlignInsert(SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr head, Boolean merge, Boolean add_insertion) ^~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpstat.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from salpstat.c:34: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salpstat.c: In function 'DenseSegStats': salpstat.c:310:10: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if(dsp && (((mmatches || mmismatches) && bsp_1 && bsp_2)) || !(mmatches || mmismatches)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salpstat.c: In function 'SeqAlignScoreFix': salpstat.c:172:20: warning: 'sp_last' may be used uninitialized in this function [-Wmaybe-uninitialized] sp_last->next = (ScorePtr) MemNew(sizeof(Score)); salpstat.c: In function 'DenseSegStats': salpstat.c:382:7: warning: 'spp_2' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqPortFree(spp_2); ^~~~~~~~~~~~~~~~~~ salpstat.c:363:36: warning: 'spp_1' may be used uninitialized in this function [-Wmaybe-uninitialized] res_1 = SeqPortGetResidue(spp_1); ^~~~~~~~~~~~~~~~~~~~~~~~ salpstat.c: In function 'SeqAlignWindowScoreFN': salpstat.c:2038:45: warning: 'score' may be used uninitialized in this function [-Wmaybe-uninitialized] residue_score[pos]=score; ~~~~~~~~~~~~~~~~~~^~~~~~ salpstat.c:2020:34: warning: 'pos' may be used uninitialized in this function [-Wmaybe-uninitialized] qgaps_score[last_pos]=-(g_open+len*g_ext); ^ salpstat.c: In function 'SeqAlignWindowScore': salpstat.c:2214:12: warning: 'scoreptr' may be used uninitialized in this function [-Wmaybe-uninitialized] return scoreptr; ^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpacc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salpacc.h:33, from salpacc.c:40: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salpacc.c: In function 'SeqAlignStrand': salpacc.c:334:20: warning: unused variable 'this_strand' [-Wunused-variable] Uint1Ptr this_strand=Seq_strand_unknown; ^~~~~~~~~~~ salpacc.c: In function 'SeqAlignStop': salpacc.c:561:13: warning: 'this_stop' may be used uninitialized in this function [-Wmaybe-uninitialized] if(this_stop!=-1) ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salprop.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salprop.h:46, from salprop.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salprop.c: In function 'CopySeqLocFromSeqAlign': salprop.c:398:13: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ salprop.c:401:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' if(crp != NULL) /*for coding region features*/ ^~ salprop.c:291:12: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable] Boolean check_gap; ^~~~~~~~~ salprop.c: In function 'FeatListToProp': salprop.c:1336:20: warning: variable 'feat_itemID' set but not used [-Wunused-but-set-variable] Uint4 feat_itemID; ^~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from salprop.c:46: salprop.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from salprop.c:42: ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] static CharPtr GBFeat[number_GBFeat] = { ^~~~~~ salprop.c: In function 'ApplyNewSeqFeat': salprop.c:620:11: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized] j = stop - SeqLocStop(sfp_location); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salprop.c:514:17: note: 'stop' was declared here stop, ^~~~ salprop.c:674:17: warning: 'sfp' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqFeatPtr sfp; ^~~ salprop.c:733:24: warning: '*((void *)&ppp+1)' may be used uninitialized in this function [-Wmaybe-uninitialized] if (!sfp_p5 && ppp.p5) ~~~~~~~~^~~~~~~~~ salprop.c:679:17: note: '*((void *)&ppp+1)' was declared here ParTials ppp; ^~~ salprop.c:737:12: warning: 'ppp' may be used uninitialized in this function [-Wmaybe-uninitialized] SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salprop.c:679:17: note: 'ppp' was declared here ParTials ppp; ^~~ salprop.c:861:40: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((val2=is_id_unique (entityID, SeqLocId(sfp->product)))) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsap.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salsap.h:57, from salsap.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salsap.c: In function 'DenseDiagToDenseSegFunc': salsap.c:2912:30: warning: variable 'slpstop2' set but not used [-Wunused-but-set-variable] slpstop1 = 0, slpstop2 = 0; ^~~~~~~~ salsap.c:2912:16: warning: variable 'slpstop1' set but not used [-Wunused-but-set-variable] slpstop1 = 0, slpstop2 = 0; ^~~~~~~~ salsap.c:2911:31: warning: variable 'slpstart2' set but not used [-Wunused-but-set-variable] Int4 slpstart1 = 0, slpstart2 = 0, ^~~~~~~~~ salsap.c:2911:16: warning: variable 'slpstart1' set but not used [-Wunused-but-set-variable] Int4 slpstart1 = 0, slpstart2 = 0, ^~~~~~~~~ salsap.c:2909:28: warning: variable 'start2' set but not used [-Wunused-but-set-variable] Int4 start1 = 0, start2 = 0, ^~~~~~ salsap.c:2909:16: warning: variable 'start1' set but not used [-Wunused-but-set-variable] Int4 start1 = 0, start2 = 0, ^~~~~~ In file included from ../include/sqnutils.h:51, from salsap.c:47: salsap.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ salsap.c:3631:13: warning: 'FindSeqAlignCallback' defined but not used [-Wunused-function] static void FindSeqAlignCallback (SeqEntryPtr sep, Pointer mydata, ^~~~~~~~~~~~~~~~~~~~ salsap.c:2157:16: warning: 'AreDenseSegSegmentsValid' defined but not used [-Wunused-function] static Boolean AreDenseSegSegmentsValid (DenseSegPtr dsp, Int4 start, Int4 num) ^~~~~~~~~~~~~~~~~~~~~~~~ salsap.c: In function 'SeqAlignEndExtend': salsap.c:986:18: warning: 'n_strands' may be used uninitialized in this function [-Wmaybe-uninitialized] Uint1Ptr n_strands; ^~~~~~~~~ salsap.c: In function 'CleanStrandsSeqAlign': salsap.c:1662:29: warning: 'dim' may be used uninitialized in this function [-Wmaybe-uninitialized] for (j=0; j < numseg*dim && strandp!=NULL; j++, strandp++) ~~~~~~^~~~ salsap.c:1669:39: warning: 'numseg' may be used uninitialized in this function [-Wmaybe-uninitialized] for (j=0, k=numseg-1; j>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salstruc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salstruc.h:56, from salstruc.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salstruc.c: In function 'prot_to_rputprot': salstruc.c:734:18: warning: comparison between pointer and zero character constant [-Wpointer-compare] if (strptmp == '\0') break; ^~ salstruc.c:734:10: note: did you mean to dereference the pointer? if (strptmp == '\0') break; ^ salstruc.c: In function 'data_collect_arrange': salstruc.c:1338:22: warning: variable 'maxscroll' set but not used [-Wunused-but-set-variable] Int4 maxscroll; ^~~~~~~~~ salstruc.c: In function 'ShowAlignmentText': salstruc.c:2203:29: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable] Uint2 entityID, itemtype; ^~~~~~~~ In file included from ../include/sqnutils.h:51, from salstruc.c:40: salstruc.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from salstruc.c:41: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ salstruc.c: In function 'data_collect_arrange': salstruc.c:920:22: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized] bspssp = new_seledstruct (entityID, itemID, OBJ_(tdp->feattype), 0,itemID, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ from + adp->bufferstart, to + adp->bufferstart, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bspsip, Seq_strand_plus, TRUE, NULL, (Pointer) tdp, 0, 1); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salstruc.c:872:19: note: 'entityID' was declared here Uint2 entityID; ^~~~~~~~ salstruc.c:1093:44: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized] seq_info->entityID=entityID; ~~~~~~~~~~~~~~~~~~^~~~~~~~~ salstruc.c:1005:17: note: 'entityID' was declared here Uint2 entityID; ^~~~~~~~ salstruc.c: In function 'ShowAlignmentText': salstruc.c:2194:19: warning: 'bspsip' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqIdPtr bspsip; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salutil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from salutil.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salutil.c: In function 'ReadBufferFromSap': salutil.c:128:24: warning: variable 'buffstart' set but not used [-Wunused-but-set-variable] Int4 bufflen, buffstart; ^~~~~~~~~ salutil.c:127:15: warning: variable 'sumstart' set but not used [-Wunused-but-set-variable] Int4 sumstart; ^~~~~~~~ salutil.c: In function 'IS_protSeqLoc': salutil.c:594:11: warning: variable 'seq' set but not used [-Wunused-but-set-variable] CharPtr seq; ^~~ salutil.c: In function 'ReplaceSeqIdWithSeqId': salutil.c:1236:20: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable] SeqEntryPtr oldscope; ^~~~~~~~ salutil.c: In function 'del_ssp_fromid': salutil.c:1722:24: warning: variable 'pressp' set but not used [-Wunused-but-set-variable] SelEdStructPtr ssp, pressp = NULL; ^~~~~~ salutil.c: In function 'checkCDSselect_forprotein': salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (feat != NULL) ^ salutil.c: In function 'NoMoreSegGapForOneAlignment': salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration] AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from salutil.c:53: salutil.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ salutil.c: In function 'sesp_to_slp': salutil.c:1927:18: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized] Int2 j,k; ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvseq.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udvseq.h:100, from udvseq.c:112: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ udvseq.c: In function 'UDV_EncodeIdxFeat': udvseq.c:448:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] return *((Int4Ptr) index_g); ~^~~~~~~~~~~~~~~~~~ udvseq.c: In function 'UDV_BigEncodeIdxFeat': udvseq.c:473:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] return *((Uint8Ptr) index_g); ~^~~~~~~~~~~~~~~~~~~ udvseq.c: In function 'UDV_ParaGFTableFeatures': udvseq.c:947:22: warning: 'nFeatLines' may be used uninitialized in this function [-Wmaybe-uninitialized] pgp->nFeatLines=nFeatLines/*-decal*/; ~~~~~~~~~~~~~~~^~~~~~~~~~~ udvseq.c:753:19: warning: 'PosFeat' may be used uninitialized in this function [-Wmaybe-uninitialized] Int4 BeginLines=0,PosFeat,StartLetter,StopLetter; ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blocks.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/blocks.h:88, from blocks.c:93: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ blocks.c: In function 'IndexBlocks': blocks.c:928:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] segp_align->to = segp_align->to = -1; ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ blocks.c: In function 'IndexNewBlocks': blocks.c:1084:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point] segp_align->to = segp_align->to = -1; ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ blocks.c: In function 'GetBlockOrientation': blocks.c:2383:11: warning: 'orient' may be used uninitialized in this function [-Wmaybe-uninitialized] return orient; ^~~~~~ blocks.c: In function 'SAMergeBlocks': blocks.c:2165:21: warning: 'tmp2' may be used uninitialized in this function [-Wmaybe-uninitialized] tmp2 = tmp2->next; ~~~~~^~~~~~~~~~~~ blocks.c:1572:28: warning: 'tmp_head' may be used uninitialized in this function [-Wmaybe-uninitialized] merged->segp_head = tmp_head; ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ blocks.c:1470:27: warning: 'tmp_curr' may be used uninitialized in this function [-Wmaybe-uninitialized] tmp1->prev = tmp_curr; ~~~~~~~~~~~^~~~~~~~~~ blocks.c:1709:27: warning: 'prev' may be used uninitialized in this function [-Wmaybe-uninitialized] tmp1->prev = prev; ~~~~~~~~~~~^~~~~~ blocks.c:1670:34: warning: 'new_sabp1' may be used uninitialized in this function [-Wmaybe-uninitialized] new_sabp1->segp_head = tmp_head; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ blocks.c: In function 'SASplitBlock': blocks.c:2796:25: warning: 'segp2_prev' may be used uninitialized in this function [-Wmaybe-uninitialized] segp2->prev = segp2_prev; ~~~~~~~~~~~~^~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pgppop.c pgppop.c:58:2: warning: missing braces around initializer [-Wmissing-braces] { ^ pgppop.c:60:4: 255, 255, 255, /* default 0 0xffffff - */ { } 255, 00, 153, /* hotpink 1 0xff1493 0xff0099 */ { } 255, 0, 255, /* magenta 2 0xff00ff - */ { } 153, 51, 255, /* purple 3 0x9b30ff 0x9933ff */ { } 0, 0, 255, /* blue 4 0x0000ff - */ { } 00, 153, 255, /* sky 5 0x1e90ff 0x0099ff */ { } 0, 255, 255, /* cyan 6 0x00ffff - */ { } 0, 255, 153, /* sea 7 0x00ff8f 0x00ff99 */ { } 0, 255, 0, /* green 8 0x00ff00 - */ { } 255, 255, 0, /* yellow 9 0xffff00 - */ { } 255, 204, 0, /* gold 10 0xffa500 0xffcc00 */ { } 255, 102, 0, /* orange 11 0xff4500 0xff6600 */ { } 255, 0, 0, /* red 12 0xff0000 - */ { } 255, 153, 153, /* pink 13 0xff7256 0xff9999 */ { } 255, 204, 204, /* pinktint 14 0xffaeb9 0xffcccc */ { } 255, 255, 255, /* white 15 0xffffff -*/ { } 0, 0, 0, /* black 16 0x000000 - */ { } 204, 204, 255, /* bluetint 17 0xb0e2ff - 0xccccff*/ { } 153, 255, 153, /* greentint 18 0x9aff9a - 0x99ff99 */ { } 255, 255, 153, /* yellowtint 19 0xffec8b - 0xffff99 */ { } 102, 102, 102, /* gray 20 0x7d7d7d 0x666666 */ { } 153, 102, 51, /* brown 21 0x8b5742 01x996633 */ { } 255, 0, 0, /* perm colors 22: red 0xff0000 - */ { } 0, 255, 0, /* perm colors 23: green 0x00ff00 - */ { } 255, 0, 255, /* perm colors 24: magenta 0xff00ff - */ { } 00, 153, 255, /* perm colors 25: sky 0x1e90ff 0x0099ff */ { } 153, 51, 255, /* perm colors 26: purple 0x9b30ff 0x9933ff */ { } 0, 255, 0, /* SS colors 27: helix, green 0x00ff00 - */ { } 255, 204, 0, /* SS colors 28: strand, gold 0xffa500 0xffcc00 */ { } 255, 102, 0, /* SS colors 29: turn, orange 0xff4500 0xff6600 */ { } 0, 255, 255, /* SS colors 30: coil, cyan ox00ffff - */ { } 255, 255, 0, /* highlight colors 31: yellow 0xffff00 - */ { } 0, 0, 0 /* background colors 32: black 0x000000 - */ { }; } pgppop.c: In function 'DDV_WWW_get_CDS_minus': pgppop.c:329:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] Boolean bGiForProductOk=FALSE; ^~~~~~~~~~~~~~~ pgppop.c:327:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] numivals2=0; ^~~~~~~~~ pgppop.c: In function 'DDV_WWW_get_CDS_plus': pgppop.c:451:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] Boolean bGiForProductOk=FALSE; ^~~~~~~~~~~~~~~ pgppop.c: In function 'DDV_DisplayTopScale': pgppop.c:1300:7: warning: unused variable 'szBlank' [-Wunused-variable] Char szBlank[TABLE_LEFT_MARGIN+5]={""}; ^~~~~~~ pgppop.c: In function 'DDV_GetBLASTCompLine_1': pgppop.c:1736:31: warning: array subscript has type 'char' [-Wchar-subscripts] if (matrix[s][q]>0){ ^ pgppop.c:1736:34: warning: array subscript has type 'char' [-Wchar-subscripts] if (matrix[s][q]>0){ ^ pgppop.c: In function 'DDV_DisplayDefaultAlign': pgppop.c:3169:13: warning: unused variable 'sabp' [-Wunused-variable] SABlockPtr sabp=NULL;/*indexed SeqAlign*/ ^~~~ pgppop.c: In function 'DDV_ShowSeqAlign': pgppop.c:3512:10: warning: unused variable 'szPopSetAuth' [-Wunused-variable] Char szPopSetAuth[INFO_SIZE+1]={""}; ^~~~~~~~~~~~ pgppop.c:3510:10: warning: unused variable 'szPopSetName' [-Wunused-variable] Char szPopSetName[INFO_SIZE+1]={""};/*article title of the Pop-Set*/ ^~~~~~~~~~~~ pgppop.c: In function 'DDV_PrintPopSetSummary': pgppop.c:3683:9: warning: variable 'bPairwise' set but not used [-Wunused-but-set-variable] Boolean bPairwise=TRUE,bPrintTax,bPrintCom; ^~~~~~~~~ In file included from ../include/sqnutils.h:51, from pgppop.c:49: pgppop.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/ddvcreate.h:143, from pgppop.c:54: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ pgppop.c:2664:13: warning: 'DDV_PrintFastaGappedSequence' defined but not used [-Wunused-function] static void DDV_PrintFastaGappedSequence(CharPtr szSequence,FILE *fp) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pgppop.c:2617:13: warning: 'DDV_GetGappedSequence' defined but not used [-Wunused-function] static void DDV_GetGappedSequence(SegmentPtr segp,CharPtr szSequence, ^~~~~~~~~~~~~~~~~~~~~ pgppop.c:1841:13: warning: 'DDV_HideMaskedLetters' defined but not used [-Wunused-function] static void DDV_HideMaskedLetters(CharPtr szSeqMaster,ParaGPtr pgp,ValNodePtr mask) ^~~~~~~~~~~~~~~~~~~~~ pgppop.c:314:13: warning: 'DDV_WWW_get_CDS_minus' defined but not used [-Wunused-function] static void DDV_WWW_get_CDS_minus(SeqMgrFeatContextPtr context,Int4 start, ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from pgppop.c:51: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ pgppop.c: In function 'DDV_GetPubValues': pgppop.c:2873:20: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(szBuf,"%d",year); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from pgppop.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 7 bytes into a destination of size 6 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pgppop.c: In function 'DDV_PopDisplay2': pgppop.c:997:23: warning: 'pgp2' may be used uninitialized in this function [-Wmaybe-uninitialized] if (pgp2 && ((pgp2->StopLetter-pgp2->StartLetter+1)>=AbsLengthAli)) { ~~~~^~~~~~~~~~~~ pgppop.c:1004:14: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized] vnp->next=NULL; ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF samutil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbistd.h:61, from ../include/samutil.h:230, from samutil.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ samutil.c: In function 'SAM_AlignIdComp': samutil.c:796:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((a == NULL) || (b == NULL)) ^~ samutil.c:799:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' choice = a->choice; ^~~~~~ samutil.c: In function 'SAM_AlignIdDup': samutil.c:852:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (oldid == NULL) ^~ samutil.c:855:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' newid = ValNodeNew(NULL); ^~~~~ samutil.c: In function 'DDE_FreeStack': samutil.c:1556:11: warning: operation on 'Index' may be undefined [-Wsequence-point] Index = ++Index % DDE_STACK_SIZE; samutil.c: In function 'DDE_Add': samutil.c:1611:22: warning: operation on 'pStack->StackMin' may be undefined [-Wsequence-point] pStack->StackMin = ++pStack->StackMin % DDE_STACK_SIZE; samutil.c:1622:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE; samutil.c: In function 'DDE_Prev': samutil.c:1686:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE; samutil.c: In function 'DDE_Next': samutil.c:1717:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point] pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE; samutil.c: In function 'DDE_ShowRow': samutil.c:1984:26: warning: variable 'NumRows' set but not used [-Wunused-but-set-variable] Int4 i, NumRows, HiRow, LowRow, tmp1, tmp2; ^~~~~~~ samutil.c: In function 'DDE_AddGapToEndOfAllRows': samutil.c:3106:41: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] ValNodePtr ptxtList, last_vnp, vnp; ^~~ samutil.c: In function 'DDE_RightAddNode': samutil.c:3707:33: warning: variable 'new_vnp' set but not used [-Wunused-but-set-variable] ValNodePtr vnp, next_vnp, new_vnp; ^~~~~~~ samutil.c: In function 'DDE_LeftMergeAndAddNodeList': samutil.c:3757:24: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] Boolean RetVal1, RetVal2, IsLeftAlignedGap, NodeDeleted; ^~~~~~~ samutil.c: In function 'DDE_RightMergeAndAddNodeList': samutil.c:3813:38: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable] Boolean RetVal=FALSE, RetVal1, RetVal2, HeadChanged; ^~~~~~~ samutil.c: In function 'DDE_ShiftRightBoundaryLeft1': samutil.c:4592:41: warning: variable 'Index' set but not used [-Wunused-but-set-variable] Int4 NumBlocks, i, NumRows, Index, BlockCount=0; ^~~~~ samutil.c: In function 'DDE_CreateArraysForDenseSeg': samutil.c:5028:22: warning: variable 'NumSegs' set but not used [-Wunused-but-set-variable] Int4 NumRows, NumSegs, i, StartIndex, StopIndex, ArrayIndex=0; ^~~~~~~ samutil.c: In function 'DDE_GetLastVNP': samutil.c:3143:9: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized] return(last_vnp); ^ samutil.c: In function 'DDE_GetNumResidues': samutil.c:3166:13: warning: 'to' may be used uninitialized in this function [-Wmaybe-uninitialized] return((to-from) + 1); ~~~^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcolor.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ddvcolor.c:160: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ddvcolor.c: In function 'DDV_GetColor': ddvcolor.c:1422:10: warning: unused variable 'retval' [-Wunused-variable] Int4 retval = 0; ^~~~~~ In file included from ../include/samutil.h:234, from ddvcolor.c:165: ddvcolor.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewmgr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/viewmgr.h:111, from viewmgr.c:165: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from viewmgr.c:167: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from viewmgr.c:168: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ viewmgr.c:683:13: warning: 'ViewMgr_Swap' defined but not used [-Wunused-function] static void ViewMgr_Swap(SeqAlign *salp1, SeqAlign *salp2) ^~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcreate.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ddvcreate.h:142, from ddvcreate.c:245: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ddvcreate.c:290:2: warning: missing braces around initializer [-Wmissing-braces] { ^ ddvcreate.c:292:4: 255, 255, 255, /* default 0 0xffffff - */ { } 255, 0, 153, /* hotpink 1 0xff1493 0xff0099 */ { } 255, 0, 255, /* magenta 2 0xff00ff - */ { } 153, 51, 255, /* purple 3 0x9b30ff 0x9933ff */ { } 0, 0, 255, /* blue 4 0x0000ff - */ { } 00, 153, 255, /* sky 5 0x1e90ff 0x0099ff */ { } 0, 255, 255, /* cyan 6 0x00ffff - */ { } 0, 255, 153, /* sea 7 0x00ff8f 0x00ff99 */ { } 0, 192, 0, /* green 8 0x00ff00 - */ { } 255, 255, 0, /* yellow 9 0xffff00 - */ { } 255, 204, 0, /* gold 10 0xffa500 0xffcc00 */ { } 255, 102, 0, /* orange 11 0xff4500 0xff6600 */ { } 255, 0, 0, /* red 12 0xff0000 - */ { } 255, 153, 153, /* pink 13 0xff7256 0xff9999 */ { } 255, 204, 204, /* pinktint 14 0xffaeb9 0xffcccc */ { } 255, 255, 255, /* white 15 0xffffff -*/ { } 0, 0, 0, /* black 16 0x000000 - */ { } 204, 204, 255, /* bluetint 17 0xb0e2ff - 0xccccff*/ { } 153, 255, 153, /* greentint 18 0x9aff9a - 0x99ff99 */ { } 255, 255, 153, /* yellowtint 19 0xffec8b - 0xffff99 */ { } 102, 102, 102, /* gray 20 0x7d7d7d 0x666666 */ { } 153, 102, 51, /* brown 21 0x8b5742 01x996633 */ { } 255, 0, 0, /* perm colors 22: red 0xff0000 - */ { } 0, 255, 0, /* perm colors 23: green 0x00ff00 - */ { } 255, 0, 255, /* perm colors 24: magenta 0xff00ff - */ { } 00, 153, 255, /* perm colors 25: sky 0x1e90ff 0x0099ff */ { } 153, 51, 255, /* perm colors 26: purple 0x9b30ff 0x9933ff */ { } 0, 255, 0, /* SS colors 27: helix, green 0x00ff00 - */ { } 255, 204, 0, /* SS colors 28: strand, gold 0xffa500 0xffcc00 */ { } 255, 102, 0, /* SS colors 29: turn, orange 0xff4500 0xff6600 */ { } 0, 255, 255, /* SS colors 30: coil, cyan ox00ffff - */ { } 255, 255, 0, /* highlight colors 31: yellow 0xffff00 - */ { } 0, 0, 0 /* background colors 32: black 0x000000 - */ { }; } ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_1': ddvcreate.c:493:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) ^~~~ ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_2': ddvcreate.c:529:21: warning: variable 'more' set but not used [-Wunused-but-set-variable] Boolean more; ^~~~ ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_EX2': ddvcreate.c:779:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) ^~~~ ddvcreate.c:690:21: warning: variable 'last' set but not used [-Wunused-but-set-variable] Boolean last; ^~~~ ddvcreate.c:686:21: warning: variable 'PopulateTo' set but not used [-Wunused-but-set-variable] Int4 PopulateTo; ^~~~~~~~~~ ddvcreate.c: In function 'DDV_DisplayNewBLAST': ddvcreate.c:1942:16: warning: variable 'what' set but not used [-Wunused-but-set-variable] Uint1 what; ^~~~ ddvcreate.c: In function 'UDV_BigEncodeIdxFeat4': ddvcreate.c:2878:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] return *((Uint8Ptr) index_g); ~^~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from ../include/ddvcreate.h:143, from ddvcreate.c:245: ddvcreate.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ In file included from ../include/sqnutils.h:51, from ddvcreate.c:249: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ ddvcreate.c:2362:16: warning: 'DDV_DisplayBlastSAP' defined but not used [-Wunused-function] static Boolean DDV_DisplayBlastSAP(SeqAlignPtr sap, ValNodePtr mask, ^~~~~~~~~~~~~~~~~~~ ddvcreate.c:525:16: warning: 'DDV_CreateDisplayFromIndex_2' defined but not used [-Wunused-function] static Boolean DDV_CreateDisplayFromIndex_2(SeqAlignPtr sap, MsaParaGPopListPtr mpplp, Int2 LineSize) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c: In function 'UAMgrIntUAMsg': ddvcreate.c:1141:11: warning: 'stop_middle' may be used uninitialized in this function [-Wmaybe-uninitialized] ubd->from=Start; ~~~~~~~~~^~~~~~ ddvcreate.c:1158:73: note: 'stop_middle' was declared here Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle; ^~~~~~~~~~~ ddvcreate.c:1195:4: warning: 'start_middle' may be used uninitialized in this function [-Wmaybe-uninitialized] UABitDescrInit(&uamp->ubd[0],0,start_middle-1,TRUE); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c:1158:60: note: 'start_middle' was declared here Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle; ^~~~~~~~~~~~ ddvcreate.c:1201:60: warning: 'halfBspLengthSeqR' may be used uninitialized in this function [-Wmaybe-uninitialized] UABitDescrInit(&uamp->ubd[1],halfBspLengthSeqL,MaxLength-halfBspLengthSeqR-1,TRUE); ~~~~~~~~~^~~~~~~~~~~~~~~~~~ ddvcreate.c:1158:24: note: 'halfBspLengthSeqR' was declared here Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle; ^~~~~~~~~~~~~~~~~ ddvcreate.c:1200:50: warning: 'halfBspLengthSeqL' may be used uninitialized in this function [-Wmaybe-uninitialized] UABitDescrInit(&uamp->ubd[0],BspStart,BspStart+halfBspLengthSeqL-1,FALSE); ~~~~~~~~^~~~~~~~~~~~~~~~~~ ddvcreate.c:1158:6: note: 'halfBspLengthSeqL' was declared here Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle; ^~~~~~~~~~~~~~~~~ ddvcreate.c: In function 'DDV_PopulateDisplayForDisc': ddvcreate.c:1048:16: warning: 'vnp_para' may be used uninitialized in this function [-Wmaybe-uninitialized] vnp_list[n-1]=vnp_para; ~~~~~~~~~~~~~^~~~~~~~~ ddvcreate.c: In function 'UABuildDescriptor2': ddvcreate.c:1541:13: warning: 'stopcopy' may be used uninitialized in this function [-Wmaybe-uninitialized] *TotLength+=(stopcopy-startcopy);/*to be used for the display coord. system*/ ^~ ddvcreate.c: In function 'DDV_DumpSAPInAFile': ddvcreate.c:1798:2: warning: 'matrix' may be used uninitialized in this function [-Wmaybe-uninitialized] DDV_AffichageParaG(mpplp,0,0,mpplp->LengthAli-1,mpplp->LengthAli,0,option, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LineSize,hFile,byteSpp,matrix,gclr,NULL); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c: In function 'DDV_ReadSeqBin': ddvcreate.c:2593:9: warning: 'btr' may be used uninitialized in this function [-Wmaybe-uninitialized] return btr; ^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jsavlt.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/jsavlt.h:4, from jsavlt.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF needleman.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/needleman.h:40, from needleman.c:78: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ needleman.c: In function 'NeedlemanWunschQuadraticByLoc': needleman.c:281:24: warning: variable 'bestDbPos' set but not used [-Wunused-but-set-variable] Int4 bestQueryPos, bestDbPos; /*position ending best score in ^~~~~~~~~ needleman.c:281:10: warning: variable 'bestQueryPos' set but not used [-Wunused-but-set-variable] Int4 bestQueryPos, bestDbPos; /*position ending best score in ^~~~~~~~~~~~ needleman.c: In function 'FetchSequenceByLoc': needleman.c:243:12: warning: 'query' may be used uninitialized in this function [-Wmaybe-uninitialized] return query; ^~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF txalign.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ txalign.c: In function 'addLinkoutForDefline': txalign.c:188:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] Boolean hasLinkout=FALSE; ^~~~~~~~~~ txalign.c: In function 'addLinkoutForBioseq': txalign.c:256:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable] Boolean hasLinkout=FALSE; ^~~~~~~~~~ txalign.c: In function 'DrawTextToBuffer': txalign.c:1254:88: warning: format '%d' expects argument of type 'int', but argument 4 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] snprintf(checkboxBuf, 200, "", sip->data.intvalue, query_number_glb); ~^ ~~~~~~~~~~~~~~~~~~ %ld txalign.c: In function 'load_align_sum_for_StdSeg': txalign.c:2230:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) { ^~~ txalign.c: In function 'ShowAlignNodeText2Ex': txalign.c:3030:13: warning: variable 'is_end' set but not used [-Wunused-but-set-variable] Boolean is_end, strip_semicolon=TRUE; ^~~~~~ txalign.c: In function 'Tx_PrintDefLine': txalign.c:4079:7: warning: unused variable 'seqid_length' [-Wunused-variable] Int4 seqid_length = 0, total_length = 0; ^~~~~~~~~~~~ txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath': txalign.c:4494:39: warning: suggest parentheses around '&&' within '||' [-Wparentheses] } else if (bestid != NULL && !(options & TXALIGN_NO_DUMPGNL) || (options & TXALIGN_NO_ENTREZ)) ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4498:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (bsp = BioseqLockById(bestid)) { ^~~ txalign.c:4200:10: warning: unused variable 'ColumnDistance' [-Wunused-variable] Int2 ColumnDistance=2, extraSpace=0, extraSpace2=0, strLen=0, maxEvalWidth=5, maxNWidth=2; ^~~~~~~~~~~~~~ txalign.c:4192:43: warning: unused variable 'sip_list' [-Wunused-variable] SeqIdPtr bestid, gi_list, subject_id, sip_list=NULL, last_id; ^~~~~~~~ txalign.c:4188:17: warning: variable 'ptr_start' set but not used [-Wunused-but-set-variable] Char *ptr, *ptr_start, *eval_buff_ptr, *bit_score_buff_ptr; ^~~~~~~~~ txalign.c: In function 'FormatScoreFromSeqAlignEx': txalign.c:4817:25: warning: unused variable 't_adj' [-Wunused-variable] Int4 m_adj = 0, t_adj = 0; ^~~~~ txalign.c:4816:29: warning: unused variable 'last_t_to' [-Wunused-variable] Int4 last_m_to = 0, last_t_to = 0; ^~~~~~~~~ txalign.c: In function 'FSFPrintOneDefline': txalign.c:4925:14: warning: variable 'seqid_len' set but not used [-Wunused-but-set-variable] Int4 gi, seqid_len = 0; ^~~~~~~~~ txalign.c: In function 'FormatScoreFunc': txalign.c:5142:13: warning: variable 'allocated' set but not used [-Wunused-but-set-variable] Boolean allocated, first; ^~~~~~~~~ txalign.c: In function 'OOFShowSingleAlignment': txalign.c:5808:27: warning: array subscript has type 'char' [-Wchar-subscripts] else if(matrix[line1[line_index]][line2[line_index]] > 0) ^ txalign.c:5808:46: warning: array subscript has type 'char' [-Wchar-subscripts] else if(matrix[line1[line_index]][line2[line_index]] > 0) ^ txalign.c:5575:13: warning: variable 'lines' set but not used [-Wunused-but-set-variable] Int4 i, lines, k, shift_info = 0; ^~~~~ txalign.c: In function 'OOFDisplayTraceBack1': txalign.c:6063:33: warning: unused variable 'st' [-Wunused-variable] tmp[10] = " ", *st; ^~ txalign.c:6063:9: warning: unused variable 'tmp' [-Wunused-variable] tmp[10] = " ", *st; ^~~ txalign.c: In function 'OOFDisplayTraceBack2': txalign.c:6137:33: warning: unused variable 'st' [-Wunused-variable] tmp[10] = " ", *st; ^~ txalign.c: In function 'FDGetTaxNamesFromBioseq': txalign.c:6239:21: warning: variable 'bdsp' set but not used [-Wunused-but-set-variable] BlastDefLinePtr bdsp; ^~~~ txalign.c: At top level: txalign.c:310:19: warning: 'ProcessTextInsertion' declared 'static' but never defined [-Wunused-function] static ValNodePtr ProcessTextInsertion PROTO((AlignNodePtr anp, Int4 m_left, Int4 m_right, BioseqPtr bsp, Int4 line_len, Int1 frame)); ^~~~~~~~~~~~~~~~~~~~ txalign.c:6137:33: warning: 'st' defined but not used [-Wunused-variable] tmp[10] = " ", *st; ^~ txalign.c:6063:9: warning: 'tmp' defined but not used [-Wunused-variable] tmp[10] = " ", *st; ^~~ txalign.c:6063:33: warning: 'st' defined but not used [-Wunused-variable] tmp[10] = " ", *st; ^~ txalign.c:2915:1: warning: 'get_seq_id' defined but not used [-Wunused-function] get_seq_id(SeqAlignPtr sap, Int2 index) ^~~~~~~~~~ txalign.c:1820:16: warning: 'has_hit_in_region' defined but not used [-Wunused-function] static Boolean has_hit_in_region(Uint1Ptr all_frame) ^~~~~~~~~~~~~~~~~ txalign.c:112:16: warning: 'getNameInitials' defined but not used [-Wunused-function] static CharPtr getNameInitials(CharPtr name){ ^~~~~~~~~~~~~~~ In file included from ../include/ncbi.h:62, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: txalign.c: In function 'DrawTextToBuffer': ../include/ncbistr.h:331:19: warning: 'HTML_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized] #define StringLen Nlm_StringLen ^~~~~~~~~~~~~ txalign.c:1094:10: note: 'HTML_buffer' was declared here CharPtr HTML_buffer; ^~~~~~~~~~~ txalign.c: In function 'OOFShowSingleAlignment.isra.17': txalign.c:73:17: warning: 'pro_line_start' may be used uninitialized in this function [-Wmaybe-uninitialized] #define fprintf tx_fprintf ^~~~~~~~~~ txalign.c:5571:48: note: 'pro_line_start' was declared here Int4 dna_index, pro_index, dna_line_start, pro_line_start; ^~~~~~~~~~~~~~ txalign.c:73:17: warning: 'dna_line_start' may be used uninitialized in this function [-Wmaybe-uninitialized] #define fprintf tx_fprintf ^~~~~~~~~~ txalign.c:5571:32: note: 'dna_line_start' was declared here Int4 dna_index, pro_index, dna_line_start, pro_line_start; ^~~~~~~~~~~~~~ txalign.c: In function 'find_score_in_align': txalign.c:2080:35: warning: 'smtp' may be used uninitialized in this function [-Wmaybe-uninitialized] stdaa_res = SeqMapTableConvert(smtp, t_res); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:1980:20: note: 'smtp' was declared here SeqMapTablePtr smtp; ^~~~ txalign.c:1945:13: warning: 't_spp' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqPortFree(t_spp); ^~~~~~~~~~~~~~~~~~ txalign.c:1876:23: note: 't_spp' was declared here SeqPortPtr m_spp, t_spp; ^~~~~ txalign.c:1961:5: warning: 'm_spp' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqPortFree(m_spp); ^~~~~~~~~~~~~~~~~~ txalign.c:1876:16: note: 'm_spp' was declared here SeqPortPtr m_spp, t_spp; ^~~~~ txalign.c: In function 'ShowAlignNodeText2Ex.isra.18': txalign.c:3025:10: warning: 'm_len' may be used uninitialized in this function [-Wmaybe-uninitialized] Int4 m_len; /*length of the master sequence*/ ^~~~~ txalign.c: In function 'ShowTextAlignFromAnnot3': txalign.c:949:12: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] return retval; ^~~~~~ txalign.c: In function 'FormatScoreFunc': txalign.c:5359:37: warning: '%s' directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=] sprintf(buffer, " " ^~ txalign.c:5362:17: id_buffer, (long) score, id_buffer, (long) score, ~~~~~~~~~ txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647] sprintf(buffer, " " ^~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647] txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647] txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 63 and 4265 bytes into a destination of size 2049 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath.part.21': txalign.c:4647:50: warning: '%s' directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=] sprintf(buffer1, "%s", id_buffer, bit_score_buff_ptr); ^~ ~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 17 and 2074 bytes into a destination of size 2049 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4645:51: warning: '%s' directive writing up to 2048 bytes into a region of size 2037 [-Wformat-overflow=] sprintf(buffer1, " %s", id_buffer, bit_score_buff_ptr); ^~ ~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/txalign.h:228, from txalign.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 18 or more bytes (assuming 2066) into a destination of size 2049 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fdlobj.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from fdlobj.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fdlobj.c: In function 'BlastDefLineSetAsnRead': fdlobj.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ fdlobj.c: In function 'BlastDefLineAsnRead': fdlobj.c:202:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/alignmgr2.h:110, from alignmgr2.c:242: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ alignmgr2.c: In function 'AlnMgr2IndexSingleDenseSegSA': alignmgr2.c:885:13: warning: statement with no effect [-Wunused-value] for (j; jnumseg && next == -1; j++) ^~~ alignmgr2.c: In function 'AlnMgr2CopySeg': alignmgr2.c:2984:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ldelta = ABS(s->beg - beg)) { ^~~~~~ alignmgr2.c: In function 'AlnMgr2AddInNewPairwiseSA': alignmgr2.c:3221:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (a = AlnMgr2GetNextSeqPiece(a)) { ^ alignmgr2.c:3223:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) { ^ alignmgr2.c:3233:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (A = AlnMgr2GetNextSeqPiece(A)) { ^ alignmgr2.c:3237:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {}; ^ alignmgr2.c: In function 'AlnMgr2SetUnaln': alignmgr2.c:5410:22: warning: variable 'dsp' set but not used [-Wunused-but-set-variable] DenseSegPtr dsp; ^~~ alignmgr2.c: In function 'AlnMgr2PrintSeqAlign': alignmgr2.c:5623:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (more = AlnMgr2GetNextAlnBit(sap, amp)) ^~~~ alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:5719:21: warning: variable 'found' set but not used [-Wunused-but-set-variable] Boolean found; ^~~~~ alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6085:22: warning: variable 'saip' set but not used [-Wunused-but-set-variable] SAIndex2Ptr saip; ^~~~ alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6331:7: warning: statement with no effect [-Wunused-value] for (i; isegnum; i++) ^~~ alignmgr2.c: In function 'AlnMgr2GetAlnLength': alignmgr2.c:6774:20: warning: comparison between pointer and zero character constant [-Wpointer-compare] if (saip->unaln == FALSE || fill_in == FALSE) ^~ alignmgr2.c:6774:8: note: did you mean to dereference the pointer? if (saip->unaln == FALSE || fill_in == FALSE) ^ alignmgr2.c: In function 'AlnMgr2ComputeScoreForSeqAlign': alignmgr2.c:8341:17: warning: variable 'numseqs' set but not used [-Wunused-but-set-variable] Int4 numseqs; ^~~~~~~ alignmgr2.c:8339:17: warning: variable 'mismatch' set but not used [-Wunused-but-set-variable] Int4 mismatch; ^~~~~~~~ alignmgr2.c:8338:17: warning: variable 'len' set but not used [-Wunused-but-set-variable] Int4 len; ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from alignmgr2.c:242: alignmgr2.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ alignmgr2.c:3557:13: warning: 'AlnMgr2AddInNewSA' defined but not used [-Wunused-function] static void AlnMgr2AddInNewSA(SeqAlignPtr parent, SeqAlignPtr sap) ^~~~~~~~~~~~~~~~~ alignmgr2.c:2368:18: warning: 'AlnMgr2GetEdgeList' defined but not used [-Wunused-function] static AMEdgePtr AlnMgr2GetEdgeList(Int4 vertexnum, AMEdgePtr edge_head, AMEdgePtr already_used) ^~~~~~~~~~~~~~~~~~ alignmgr2.c:2140:13: warning: 'AlnMgr2SortVerticesByNumEdges' defined but not used [-Wunused-function] static void AlnMgr2SortVerticesByNumEdges(AMVertexPtr PNTR vertexarray, Int4 numvertices) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:1061:13: warning: 'AlnMgr2UnpackSeqAlignChain' defined but not used [-Wunused-function] static void AlnMgr2UnpackSeqAlignChain(SeqAlignPtr sap) ^~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function 'AlnMgr2GetLongestSeqLoc': alignmgr2.c:10131:15: warning: 'slp_longest' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqLocPtr slp_longest; ^~~~~~~~~~~ alignmgr2.c: In function 'AlnMgr2IndexLite': alignmgr2.c:1001:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wmaybe-uninitialized] sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs); ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:968:17: note: 'sap_segs_prev' was declared here SeqAlignPtr sap_segs_prev; ^~~~~~~~~~~~~ alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo': alignmgr2.c:6122:54: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] *from = dsp->starts[dsp->dim*i+row-1]+dsp->lens[i]; ~~~^~~~~~ alignmgr2.c: In function 'AlnMgr2GetMaxUnalignedLength': alignmgr2.c:7068:23: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] for (i=0; isrdp[row]->numunaln && !found; i++) ~~~~^~~~~~ alignmgr2.c:7077:19: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] for (i=0; idim; i++) ~~~^~~~~ alignmgr2.c: In function 'AlnMgr2GetInterruptInfo': alignmgr2.c:6353:16: warning: 'iip' may be used uninitialized in this function [-Wmaybe-uninitialized] iip->strand = strand; ~~~~~~~~~~~~^~~~~~~~ alignmgr2.c:6182:19: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] trans = saip->srdp[saip->anchor-1]->sect; ~~~~^~~~~~ alignmgr2.c:6337:48: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] iip->starts[k] = dsp->starts[dsp->dim*i + interrupt->row-1]; ~~~^~~~~ alignmgr2.c: In function 'AlnMgr2GetNthSeqRangeInSA': alignmgr2.c:6478:15: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] srdp = saip->srdp[n-1]; ~~~~^~~~~~ alignmgr2.c:6489:57: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] beg = dsp->starts[srdp->sect[srdp->numsect-1]*(dsp->dim) + n-1]; ~~~~^~~~~~ alignmgr2.c: In function 'AlnMgr2GetNthRowSpanInSA': alignmgr2.c:6550:20: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] *start = saip->aligncoords[i]; ~~~~^~~~~~~~~~~~~ alignmgr2.c:6558:41: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] *stop = saip->aligncoords[i] + dsp->lens[srdp->sect[srdp->numsect-1]] - 1; ~~~^~~~~~ alignmgr2.c: In function 'AlnMgr2GetAlnLength': alignmgr2.c:6789:17: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized] len += AlnMgr2GetMaxUnalignedLength(salp, i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:6780:24: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] lastseg = saip->srdp[saip->anchor-1]->sect[saip->srdp[saip->anchor-1]->numsect-1]; ~~~~^~~~~~ alignmgr2.c:6788:20: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] len += dsp->lens[i]; ~~~^~~~~~ alignmgr2.c: In function 'AlnMgr2GetNextAlnBit': alignmgr2.c:6025:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] if (saip->anchor <= 0) ~~~~^~~~~~~~ alignmgr2.c:6006:17: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] len += dsp->lens[trans[i]]; ~~~^~~~~~ alignmgr2.c: In function 'AlnMgr2IsSAPDiscAli': alignmgr2.c:6813:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] if (saip->numunaln > 0) ~~~~^~~~~~~~~~ alignmgr2.c: In function 'AlnMgr2GetNumAlnBlocks': alignmgr2.c:6836:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] if (saip->numunaln >= 0) ~~~~^~~~~~~~~~ alignmgr2.c: In function 'AlnMgr2GetNthBlockRange': alignmgr2.c:6870:20: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] *start = saip->aligncoords[saip->unaln[n-1]+1]; ~~~~^~~~~~~~~~~~~ alignmgr2.c: In function 'AlnMgr2GetNthUnalignedForNthRow': alignmgr2.c:6889:22: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] SAIndex2Ptr saip; ^~~~ alignmgr2.c:6936:65: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] *start = dsp->starts[(saip->srdp[row-1]->unaligned[i])*dsp->dim+row-1] + dsp->lens[(saip->srdp[row-1]->unaligned[i])]; ~~~^~~~~ alignmgr2.c: In function 'AlnMgr2GetNextLengthBit': alignmgr2.c:7019:26: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] maxseg = saip->unaln[*seg]; ~~~~^~~~~~~ alignmgr2.c:7024:26: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] (*len) += dsp->lens[i]; ~~~^~~~~~ alignmgr2.c: In function 'AlnMgr2GetNumSegsInRange': alignmgr2.c:7185:62: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] start = binary_search_on_uint4_list(aligncoords, from, dsp->numseg); ~~~^~~~~~~~ alignmgr2.c:7150:21: warning: 'aligncoords' may be used uninitialized in this function [-Wmaybe-uninitialized] Uint4Ptr aligncoords; ^~~~~~~~~~~ alignmgr2.c: In function 'AlnMgr2MapBioseqToSeqAlign': alignmgr2.c:7652:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] if (saip->anchor > 0) ~~~~^~~~~~~~ alignmgr2.c:7590:21: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] DenseSegPtr dsp; ^~~ alignmgr2.c: In function 'AlnMgr2MapSeqAlignToBioseq': alignmgr2.c:7715:11: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized] sect = binary_search_on_uint4_list(saip->aligncoords, pos, saip->numseg); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:7730:36: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized] return (dsp->starts[sect*(dsp->dim)+row-1] + dsp->lens[sect] - 1 - offset); ~~~~^~~~~~ alignmgr2.c: In function 'AlnMgr2GetSubAlign': alignmgr2.c:8036:13: warning: 'sap_real' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((a = AlnMgr2FindAnchor(sap_real)) > 0) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c: In function 'AlnMgr2FillInUnaligned': alignmgr2.c:9869:12: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized] curr = curr + 1 + offset; ~~~~~^~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alnread.c In file included from /usr/s390x-linux-gnu/include/string.h:494, from alnread.c:35: In function 'strcpy', inlined from 's_RemoveBasePairCountCommentsFromData' at alnread.c:4419:25, inlined from 's_ProcessAlignFileRawForMarkedIDs' at alnread.c:4453:5, inlined from 'ReadAlignmentFileEx2' at alnread.c:6096:9: /usr/s390x-linux-gnu/include/bits/string_fortified.h:90:10: warning: '__builtin_strcpy' accessing 1 byte at offsets 0 and [0, 9223372036854775807] may overlap 1 byte at offset 0 [-Wrestrict] return __builtin___strcpy_chk (__dest, __src, __bos (__dest)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acerdapi.c acerdapi.c: In function 'DoesSeqStringMatchBsp': acerdapi.c:201:30: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable] Int4 ctr, pos = 0, i, len, seq_len; ^~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from acerdapi.c:40: acerdapi.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aceread.c aceread.c:3308:12: warning: 's_GetUngappedPosition' defined but not used [-Wunused-function] static int s_GetUngappedPosition (int gapped_pos, char *seq) ^~~~~~~~~~~~~~~~~~~~~ aceread.c:276:13: warning: 'AdjustGapInfoFor3Trim' defined but not used [-Wunused-function] static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len) ^~~~~~~~~~~~~~~~~~~~~ aceread.c:247:13: warning: 'AdjustGapInfoFor5Trim' defined but not used [-Wunused-function] static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim) ^~~~~~~~~~~~~~~~~~~~~ aceread.c:134:12: warning: 's_IsGapChar' defined but not used [-Wunused-function] static int s_IsGapChar (char ch, char *gap_chars) ^~~~~~~~~~~ aceread.c: In function 's_ReadContig': aceread.c:1477:12: warning: 'linestring' may be used uninitialized in this function [-Wmaybe-uninitialized] if (linestring != NULL) free (linestring); ^ rm -f libncbiobj.a ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiobj.a ../lib ranlib ../lib/libncbiobj.a s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdentrez.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cdentrez.c:283:23: warning: 'CdEntMlSumGet' declared 'static' but never defined [-Wunused-function] static DocSumPtr NEAR CdEntMlSumGet PROTO((Int4 uid)); ^~~~~~~~~~~~~ cdentrez.c:310:23: warning: 'CdEntSeqSumGet' declared 'static' but never defined [-Wunused-function] static DocSumPtr NEAR CdEntSeqSumGet PROTO((Int4 uid, DocType type)); ^~~~~~~~~~~~~~ cdentrez.c:2935:23: warning: 'MedSumAsnRead' defined but not used [-Wunused-function] static DocSumPtr NEAR MedSumAsnRead (AsnIoPtr aip, DocUid uid) ^~~~~~~~~~~~~ cdentrez.c:1616:26: warning: 'FreePostingList' defined but not used [-Wunused-function] static ByteStorePtr NEAR FreePostingList (ByteStorePtr lst) ^~~~~~~~~~~~~~~ cdentrez.c:307:20: warning: 'BIOSEQ_id_E' defined but not used [-Wunused-variable] static AsnTypePtr BIOSEQ_id_E = NULL; ^~~~~~~~~~~ cdentrez.c: In function 'CdEntrezMergeTerm': cdentrez.c:2675:17: warning: 'total' may be used uninitialized in this function [-Wmaybe-uninitialized] *totl = total; ~~~~~~^~~~~~~ cdentrez.c:2672:17: warning: 'special' may be used uninitialized in this function [-Wmaybe-uninitialized] *spcl = special; ~~~~~~^~~~~~~~~ cdentrez.c:2640:5: warning: 'termpage' may be used uninitialized in this function [-Wmaybe-uninitialized] cd3_CdTermScan (db, fld, termpage, (Int4)0, ScanAndFreeProc); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdentrez.c: In function 'CdLinkUidList': cdentrez.c:938:9: warning: 'count' may be used uninitialized in this function [-Wmaybe-uninitialized] return count; ^~~~~ cdentrez.c: In function 'CdTermListByTerm': cdentrez.c:1036:12: warning: 'first' may be used uninitialized in this function [-Wmaybe-uninitialized] rsult = cd3_CdTermScan(type,field,first,0,TermListTermScanProc); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdentrez.c: In function 'CdEntTLAddTerm': cdentrez.c:1895:24: warning: 'total' may be used uninitialized in this function [-Wmaybe-uninitialized] if (scanOk && total > 0) { ~~~~~~~^~~~~~~~~~~~ cdentrez.c:1787:13: note: 'total' was declared here Int4 total; ^~~~~ cdentrez.c: In function 'CdEntrezFindTerm': cdentrez.c:1123:3: warning: 'ctp' may be used uninitialized in this function [-Wmaybe-uninitialized] CdTermFree(ctp); ^~~~~~~~~~~~~~~ cdentrez.c: In function 'CdEntMedlineEntryListGet': cdentrez.c:2720:6: warning: 'aip' may be used uninitialized in this function [-Wmaybe-uninitialized] cd3_CdDocAsnClose(aip); ^~~~~~~~~~~~~~~~~~~~~~ cdentrez.c: In function 'CdSeqSumAsnRead': cdentrez.c:3424:34: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf (cds, " cds%d", (int) proteins); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 11 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdentrez.c:3503:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf (caption, "%s, %s", author, year); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from cdentrez.c:162: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 51 bytes into a destination of size 50 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdromlib.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdromlib.c:73: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdnewlib.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cdnewlib.c:600:27: warning: missing braces around initializer [-Wmissing-braces] struct CdFInfo _finfo[] = { ^ "", 0, 0, { } "hca", MAGIC_hca, FORMAT_hca, { } "sum", MAGIC_sum, FORMAT_sum, { } "lnk", MAGIC_lnk, FORMAT_lnk, { } "ofs", MAGIC_ofs, FORMAT_ofs, { } "oix", MAGIC_oix, FORMAT_oix, { } "trm", MAGIC_trm, FORMAT_trm, { } "tix", MAGIC_tix, FORMAT_tix, { } "pst", MAGIC_pst, FORMAT_pst, { } "inf", MAGIC_inf, FORMAT_inf { }; } cdnewlib.c:614:27: warning: missing braces around initializer [-Wmissing-braces] struct CdDirInfo _dir[] = { ^ cdnewlib.c: In function 'cd3_CdDocAsnOpen': cdnewlib.c:1342:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (AsnIo*) CatastrophicFailure(1); ^ cdnewlib.c:1327:9: warning: unused variable 'fdir' [-Wunused-variable] char *fdir = NULL; ^~~~ cdnewlib.c: In function 'UidIndex_ReadPage': cdnewlib.c:1937:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (long*)CatastrophicFailure(1); ^ cdnewlib.c:1945:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] return (long*)CatastrophicFailure(1); ^ cdnewlib.c: In function 'CdDevice_Init': cdnewlib.c:2739:6: warning: variable 'cd_num' set but not used [-Wunused-but-set-variable] int cd_num; ^~~~~~ At top level: cdnewlib.c:3605:13: warning: 'Cache_Purge' defined but not used [-Wunused-function] static void Cache_Purge (Cache *cache) ^~~~~~~~~~~ cdnewlib.c:3592:14: warning: 'Cache_Peek' defined but not used [-Wunused-function] static void* Cache_Peek (Cache *cache, long id) ^~~~~~~~~~ cdnewlib.c:3569:12: warning: 'Cache_Touch' defined but not used [-Wunused-function] static int Cache_Touch (Cache *cache, long id) ^~~~~~~~~~~ cdnewlib.c:3506:12: warning: 'Cache_Delete' defined but not used [-Wunused-function] static int Cache_Delete (Cache *cache, long id) ^~~~~~~~~~~~ cdnewlib.c:638:18: warning: '_div' defined but not used [-Wunused-variable] static DivInfo * _div; ^~~~ cdnewlib.c:582:15: warning: '_empty_string' defined but not used [-Wunused-variable] static char * _empty_string = ""; ^~~~~~~~~~~~~ cdnewlib.c: In function 'trmncmp': cdnewlib.c:2375:5: warning: 'c1' may be used uninitialized in this function [-Wmaybe-uninitialized] if (c1 == '/') ^ cdnewlib.c:2362:13: warning: 'c2' may be used uninitialized in this function [-Wmaybe-uninitialized] int i, c1, c2; ^~ In file included from /usr/s390x-linux-gnu/include/string.h:494, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: In function 'strncat', inlined from 'CdDevice_FileBuildPath.part.21' at cdnewlib.c:2679:5: /usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' specified bound 16 equals destination size [-Wstringop-overflow=] return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdnewlib.c: In function 'UnixFileGets': cdnewlib.c:1509:6: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ch == '\0') { ^ In file included from /usr/s390x-linux-gnu/include/string.h:494, from ../include/ncbilcl.h:156, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objacces.h:64, from ../include/cdromlib.h:71, from cdnewlib.c:208: In function 'strncat', inlined from 'CdDevice_Init' at cdnewlib.c:2751:3: /usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' specified bound 256 equals destination size [-Wstringop-overflow=] return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'CdDevice_Init' at cdnewlib.c:2769:6: /usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' specified bound 256 equals destination size [-Wstringop-overflow=] return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdnewlib.c: In function 'TrmIndex_Lookup': cdnewlib.c:2168:27: warning: 'term' may be used uninitialized in this function [-Wmaybe-uninitialized] if (d==0 && len == (int)strlen(term)) ^~~~~~~~~~~~ cdnewlib.c:2168:6: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] if (d==0 && len == (int)strlen(term)) ^ cdnewlib.c:2136:14: warning: 'mid' may be used uninitialized in this function [-Wmaybe-uninitialized] int lo, hi, mid, len, d; ^~~ cdnewlib.c: In function 'UidIndex_Lookup': cdnewlib.c:1986:20: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized] page_num = (uid < *p && mid >0) ? mid-1 : mid; ^~ cdnewlib.c:1986:42: warning: 'mid' may be used uninitialized in this function [-Wmaybe-uninitialized] page_num = (uid < *p && mid >0) ? mid-1 : mid; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF casn.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from casn.c:84: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdconfig.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from cdconfig.c:75: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from ../include/ncbi.h:58, from cdconfig.c:75: cdconfig.c: In function 'ChangeMedia': ../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value] #define FALSE ((Nlm_Boolean)0) ^ ../include/ncbifile.h:144:76: note: in expansion of macro 'FALSE' #define EjectCd(sVolume, deviceName, rawDeviceName, mountPoint, mountCmd) FALSE ^~~~~ cdconfig.c:941:29: note: in expansion of macro 'EjectCd' EjectCd(toBeEjected->entrez_info->volume_label, ^~~~~~~ ../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value] #define FALSE ((Nlm_Boolean)0) ^ ../include/ncbifile.h:145:76: note: in expansion of macro 'FALSE' #define MountCd(sVolume, deviceName, mountPoint, mountCmd) FALSE ^~~~~ cdconfig.c:960:17: note: in expansion of macro 'MountCd' MountCd(newMedia->entrez_info->volume_label, cdm->device_name, ^~~~~~~ cdconfig.c: At top level: cdconfig.c:191:17: warning: 'UnMarkLRUineligible' declared 'static' but never defined [-Wunused-function] static void UnMarkLRUineligible PROTO((void)); ^~~~~~~~~~~~~~~~~~~ cdconfig.c: In function 'EntrezInfoMerge': cdconfig.c:1257:45: warning: 'besttype' may be used uninitialized in this function [-Wmaybe-uninitialized] besttype->fields[f].num_terms; ~~~~~~~~^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/cdrom.h:9, from objentr.c:102: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ objentr.c: In function 'CdRomAsnLoad': objentr.c:170:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (loaded) ^~ objentr.c:172:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' loaded = TRUE; ^~~~~~ objentr.c: In function 'DocSumAsnRead': objentr.c:970:16: warning: variable 'func' set but not used [-Wunused-but-set-variable] AsnReadFunc func; ^~~~ objentr.c:969:12: warning: unused variable 'isError' [-Wunused-variable] Boolean isError = FALSE; ^~~~~~~ At top level: objentr.c:806:23: warning: 'EntrezDivInfo_Destruct' defined but not used [-Wunused-function] static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div) ^~~~~~~~~~~~~~~~~~~~~~ objentr.c:771:16: warning: 'EntrezLinkInfo_AsnWrite' defined but not used [-Wunused-function] static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type) ^~~~~~~~~~~~~~~~~~~~~~~ objentr.c: In function 'EntrezInfoAsnRead': objentr.c:392:4: warning: 'div' may be used uninitialized in this function [-Wmaybe-uninitialized] EntrezDivInfo_AsnRead(div++,stream,atp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ objentr.c:763:17: warning: 'link' may be used uninitialized in this function [-Wmaybe-uninitialized] link->datasize = (int) val.intvalue; ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ objentr.c:240:18: note: 'link' was declared here EntrezLinkInfo *link; ^~~~ objentr.c:704:19: warning: 'fld' may be used uninitialized in this function [-Wmaybe-uninitialized] fld->post_type = (PostType) val.intvalue; ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ objentr.c:239:19: note: 'fld' was declared here EntrezFieldInfo *fld; ^~~ objentr.c:649:18: warning: 'tinf' may be used uninitialized in this function [-Wmaybe-uninitialized] tinf->asntype = (char*) val.ptrvalue; ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ objentr.c:238:18: note: 'tinf' was declared here EntrezTypeInfo *tinf; ^~~~ objentr.c:856:16: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized] div->docs[i++] = val.intvalue; ~^~ objentr.c:824:7: note: 'i' was declared here int i; ^ rm -f libncbicdr.a ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbicdr.a ../lib ranlib ../lib/libncbicdr.a s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibbutns.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibbutns.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:354:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] Nlm_ControlTool c; ^ vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:373:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] Nlm_ControlTool c; ^ vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:694:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] Nlm_Int2 val; ^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibextra.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibextra.c:87: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibfiles.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibfiles.c: In function 'Nlm_CardToStr': vibfiles.c:715:19: warning: '%*u' directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] sprintf (temp, "%*u", length, (int)cardval); ^~~ vibfiles.c:715:18: note: directive argument in the range [0, 65535] sprintf (temp, "%*u", length, (int)cardval); ^~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function 'Nlm_IntToStr': vibfiles.c:725:19: warning: '%*d' directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] sprintf (temp, "%*d", length, intval); ^~~ vibfiles.c:725:18: note: directive argument in the range [-32768, 32767] sprintf (temp, "%*d", length, intval); ^~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function 'Nlm_LongToStr': vibfiles.c:735:19: warning: '%*ld' directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] sprintf (temp, "%*ld", length, (long)longval); ^~~~ vibfiles.c:735:18: note: directive argument in the range [-2147483648, 2147483647] sprintf (temp, "%*ld", length, (long)longval); ^~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibforms.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibforms.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibgroup.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibgroup.c:84: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viblists.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from viblists.c:164: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ viblists.c: In function 'Nlm_SetListPosition': viblists.c:1121:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] Nlm_Boolean is_realized; ^~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmenus.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmenus.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:2006:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] Nlm_Int2 itm; ^~~ vibmenus.c:2005:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2072:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2122:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2166:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] Nlm_Int2 itm; ^~~ vibmenus.c:2164:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2329:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] Nlm_Int2 itm; ^~~ vibmenus.c:2328:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2395:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2489:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] Nlm_Int2 itm; ^~~ vibmenus.c:2487:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2627:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3056:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3239:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3349:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] Nlm_MenU m; ^ vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3978:17: warning: unused variable 'accel' [-Wunused-variable] Nlm_Char accel; ^~~~~ vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4969:19: warning: unused variable 'lbl' [-Wunused-variable] Widget lbl; ^~~ vibmenus.c:4967:19: warning: unused variable 'color' [-Wunused-variable] Pixel color; ^~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibprmpt.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibprmpt.c:78: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibsbars.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibsbars.c:135: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibslate.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibslate.c:53: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_SlateTool h; ^ vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_SlateTool h; ^ vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (h, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (h, XmNforeground, &color, 0); ^~~~~~~~~~~~~ vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (h, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (h, XmNforeground, &color, 0); ^~~~~~~~~~~~~ vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_SlateTool h; ^ vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (w, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (w, XmNforeground, &color, 0); ^~~~~~~~~~~~~ vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=] XtVaGetValues(w, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=] XtVaGetValues(w, XmNforeground, &color, 0); ^~~~~~~~~~~~~ vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (w, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (w, XmNforeground, &color, 0); ^~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibtexts.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibtexts.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data; ^~~ vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] XmAnyCallbackStruct *cbs; ^~~ vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] XKeyEvent *event; ^~~~~ vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] XKeyEvent *event; ^~~~~ vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] XmAnyCallbackStruct *cbs; ^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibutils.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from vibutils.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibutils.c: In function 'Nlm_VibMessageHook': vibutils.c:776:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] percent = (Nlm_Int4)Nlm_GetAppProperty( "VibrantMessageWidthMax" ); ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibwndws.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibwndws.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] int defaultdepth; ^~~~~~~~~~~~ vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] int screen_num; ^~~~~~~~~~ vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6800:13: warning: unused variable 'retval' [-Wunused-variable] Nlm_Int2 retval; ^~~~~~ vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6922:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmain.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmain.c:40: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibmain.c:121:1: warning: return type defaults to 'int' [-Wimplicit-int] main (int argc, char *argv[]) ^~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidraw.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ncbidraw.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawing.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from drawing.c:128: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mapping.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from mapping.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] Int4 curScale; ^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF picture.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from picture.c:100: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from viewer.c:120: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF document.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from document.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ document.c: In function 'Nlm_PrintDocument': document.c:4419:7: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ document.c:4423:7: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF table.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from table.c:62: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF palette.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from palette.c:62: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF diagnost.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from diagnost.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF image.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from image.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ image.c: In function 'ShiftXMask': image.c:840:26: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] if(!((mask >> hi + low) & (unsigned long)1)) break; ~~~^~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pictur3d.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/pictur3d.h:49, from ../include/ppict3d.h:49, from pictur3d.c:47: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ pictur3d.c: In function 'Nlm_DeleteFromSeg': pictur3d.c:114:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else seg->first = b->next; ^~~~ pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' if ( seg->last == b ) seg->last = bprev; ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d1.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d1.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d2.c:65: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d3.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d3.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d4.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d4.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d5.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d5.c:66: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer3d.c s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmouse.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibmouse.c:67: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF netscape.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from netscape.c:62: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] Bool waited = False; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF imagelst.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/imagelst.h:52, from imagelst.c:61: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF treeview.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/treemgr.h:67, from treeview.c:91: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ treeview.c: In function 'getNodeLength': treeview.c:177:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] length= (Int4)tree_getNode(cursor, TREE_NODE_FMT_DISTANCE, &size); ^ treeview.c: In function 'getIconId': treeview.c:187:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] a= (Int4) tree_getNode(cursor, TREE_NODE_FMT_ICON, &size); ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF shim3d.c shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3470:46: warning: unused variable 'tmp' [-Wunused-variable] *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; ^~~ shim3d.c:3470:40: warning: unused variable 'pCz' [-Wunused-variable] *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; ^~~ shim3d.c:3470:34: warning: unused variable 'pCy' [-Wunused-variable] *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; ^~~ shim3d.c:3470:28: warning: unused variable 'pCx' [-Wunused-variable] *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; ^~~ shim3d.c:3470:22: warning: unused variable 'pNz' [-Wunused-variable] *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; ^~~ shim3d.c:3470:16: warning: unused variable 'pNy' [-Wunused-variable] *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; ^~~ shim3d.c:3470:10: warning: unused variable 'pNx' [-Wunused-variable] *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL; ^~~ shim3d.c:3469:47: warning: unused variable 'Cz' [-Wunused-variable] GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, ^~ shim3d.c:3469:42: warning: unused variable 'Cy' [-Wunused-variable] GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, ^~ shim3d.c:3469:37: warning: unused variable 'Cx' [-Wunused-variable] GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, ^~ shim3d.c:3469:32: warning: unused variable 'Nz' [-Wunused-variable] GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, ^~ shim3d.c:3469:27: warning: unused variable 'Ny' [-Wunused-variable] GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, ^~ shim3d.c:3469:15: warning: unused variable 'Nx' [-Wunused-variable] GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz, ^~ shim3d.c:3468:21: warning: unused variable 'pi' [-Wunused-variable] cosj, sinj, pi = 3.14159265358979323846; ^~ shim3d.c:3468:15: warning: unused variable 'sinj' [-Wunused-variable] cosj, sinj, pi = 3.14159265358979323846; ^~~~ shim3d.c:3468:9: warning: unused variable 'cosj' [-Wunused-variable] cosj, sinj, pi = 3.14159265358979323846; ^~~~ shim3d.c:3467:33: warning: unused variable 'prevlen' [-Wunused-variable] Hx, Hy, Hz, Vx, Vy, Vz, prevlen, ^~~~~~~ shim3d.c:3467:29: warning: unused variable 'Vz' [-Wunused-variable] Hx, Hy, Hz, Vx, Vy, Vz, prevlen, ^~ shim3d.c:3467:25: warning: unused variable 'Vy' [-Wunused-variable] Hx, Hy, Hz, Vx, Vy, Vz, prevlen, ^~ shim3d.c:3467:21: warning: unused variable 'Vx' [-Wunused-variable] Hx, Hy, Hz, Vx, Vy, Vz, prevlen, ^~ shim3d.c:3467:17: warning: unused variable 'Hz' [-Wunused-variable] Hx, Hy, Hz, Vx, Vy, Vz, prevlen, ^~ shim3d.c:3467:13: warning: unused variable 'Hy' [-Wunused-variable] Hx, Hy, Hz, Vx, Vy, Vz, prevlen, ^~ shim3d.c:3467:9: warning: unused variable 'Hx' [-Wunused-variable] Hx, Hy, Hz, Vx, Vy, Vz, prevlen, ^~ shim3d.c:3466:21: warning: unused variable 'dQtz' [-Wunused-variable] dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/ ^~~~ shim3d.c:3466:15: warning: unused variable 'dQty' [-Wunused-variable] dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/ ^~~~ shim3d.c:3466:9: warning: unused variable 'dQtx' [-Wunused-variable] dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/ ^~~~ shim3d.c:3464:14: warning: unused variable 'len' [-Wunused-variable] GLdouble len, R1x, R1y, R1z, R2x, R2y, R2z, MG[4][3], ^~~ shim3d.c:3463:26: warning: unused variable 'offset' [-Wunused-variable] Nlm_Int4 i, j, k, m, offset; ^~~~~~ shim3d.c:3463:23: warning: unused variable 'm' [-Wunused-variable] Nlm_Int4 i, j, k, m, offset; ^ shim3d.c:3463:20: warning: unused variable 'k' [-Wunused-variable] Nlm_Int4 i, j, k, m, offset; ^ shim3d.c:3463:17: warning: unused variable 'j' [-Wunused-variable] Nlm_Int4 i, j, k, m, offset; ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF odlbox.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from odlbox.c:50: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] Boolean IsGoUp=FALSE; ^~~~~~ rm -f libvibrant.a ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibrant.a ../lib ranlib ../lib/libvibrant.a mv vibbutns.o vibbutns.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibbutns.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibbutns.c: In function 'Nlm_CheckCallback': vibbutns.c:354:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] Nlm_ControlTool c; ^ vibbutns.c: In function 'Nlm_RadioCallback': vibbutns.c:373:20: warning: variable 'c' set but not used [-Wunused-but-set-variable] Nlm_ControlTool c; ^ vibbutns.c: In function 'Nlm_SetButtonStatus': vibbutns.c:694:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] Nlm_Int2 val; ^~~ mv vibbutns.o vibbutns.glo mv vibbutns.tmp vibbutns.o mv vibextra.o vibextra.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibextra.c:87: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv vibextra.o vibextra.glo mv vibextra.tmp vibextra.o mv vibfiles.o vibfiles.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibfiles.c: In function 'Nlm_CardToStr': vibfiles.c:715:19: warning: '%*u' directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] sprintf (temp, "%*u", length, (int)cardval); ^~~ vibfiles.c:715:18: note: directive argument in the range [0, 65535] sprintf (temp, "%*u", length, (int)cardval); ^~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function 'Nlm_IntToStr': vibfiles.c:725:19: warning: '%*d' directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] sprintf (temp, "%*d", length, intval); ^~~ vibfiles.c:725:18: note: directive argument in the range [-32768, 32767] sprintf (temp, "%*d", length, intval); ^~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vibfiles.c: In function 'Nlm_LongToStr': vibfiles.c:735:19: warning: '%*ld' directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=] sprintf (temp, "%*ld", length, (long)longval); ^~~~ vibfiles.c:735:18: note: directive argument in the range [-2147483648, 2147483647] sprintf (temp, "%*ld", length, (long)longval); ^~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibfiles.c:54: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mv vibfiles.o vibfiles.glo mv vibfiles.tmp vibfiles.o mv vibforms.o vibforms.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibforms.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv vibforms.o vibforms.glo mv vibforms.tmp vibforms.o mv vibgroup.o vibgroup.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibgroup.c:84: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv vibgroup.o vibgroup.glo mv vibgroup.tmp vibgroup.o mv viblists.o viblists.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from viblists.c:164: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ viblists.c: In function 'Nlm_SetListPosition': viblists.c:1121:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable] Nlm_Boolean is_realized; ^~~~~~~~~~~ mv viblists.o viblists.glo mv viblists.tmp viblists.o mv vibmenus.o vibmenus.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmenus.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibmenus.c: In function 'Nlm_IsMenuItemChecked': vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_CheckMenuItem': vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_EnableMenuItem': vibmenus.c:2006:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] Nlm_Int2 itm; ^~~ vibmenus.c:2005:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_EnableChoice': vibmenus.c:2072:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_EnableChoiceGroup': vibmenus.c:2122:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_EnableChoiceItem': vibmenus.c:2166:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] Nlm_Int2 itm; ^~~ vibmenus.c:2164:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_DisableMenuItem': vibmenus.c:2329:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] Nlm_Int2 itm; ^~~ vibmenus.c:2328:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_DisableChoice': vibmenus.c:2395:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_DisableChoiceItem': vibmenus.c:2489:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable] Nlm_Int2 itm; ^~~ vibmenus.c:2487:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_RemoveSubMenu': vibmenus.c:2627:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_CountMenuItems': vibmenus.c:3056:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_GetMenuItem': vibmenus.c:3239:17: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_MenuTool h; ^ vibmenus.c: In function 'Nlm_GetPopListTitle': vibmenus.c:3349:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] Nlm_MenU m; ^ vibmenus.c: In function 'Nlm_AppendItems': vibmenus.c:3978:17: warning: unused variable 'accel' [-Wunused-variable] Nlm_Char accel; ^~~~~ vibmenus.c: In function 'Nlm_NewPopupList': vibmenus.c:4969:19: warning: unused variable 'lbl' [-Wunused-variable] Widget lbl; ^~~ vibmenus.c:4967:19: warning: unused variable 'color' [-Wunused-variable] Pixel color; ^~~~~ mv vibmenus.o vibmenus.glo mv vibmenus.tmp vibmenus.o mv vibprmpt.o vibprmpt.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibprmpt.c:78: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv vibprmpt.o vibprmpt.glo mv vibprmpt.tmp vibprmpt.o mv vibsbars.o vibsbars.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibsbars.c:135: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv vibsbars.o vibsbars.glo mv vibsbars.tmp vibsbars.o mv vibslate.o vibslate.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibslate.c:53: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibslate.c: In function 'Nlm_EnableSlate': vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_SlateTool h; ^ vibslate.c: In function 'Nlm_DisableSlate': vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_SlateTool h; ^ vibslate.c: In function 'Nlm_SelectSlate': vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (h, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (h, XmNforeground, &color, 0); ^~~~~~~~~~~~~ vibslate.c: In function 'Nlm_SelectPanel': vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (h, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (h, XmNforeground, &color, 0); ^~~~~~~~~~~~~ vibslate.c: In function 'Nlm_SlateClick': vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable] Nlm_SlateTool h; ^ vibslate.c: In function 'Nlm_SlateClickCallback': vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (w, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (w, XmNforeground, &color, 0); ^~~~~~~~~~~~~ vibslate.c: In function 'Nlm_SlateInputCallback': vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=] XtVaGetValues(w, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=] XtVaGetValues(w, XmNforeground, &color, 0); ^~~~~~~~~~~~~ vibslate.c: In function 'Nlm_SlateDrawCallback': vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (w, XmNbackground, &color, 0); ^~~~~~~~~~~~~ vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=] XtVaGetValues (w, XmNforeground, &color, 0); ^~~~~~~~~~~~~ vibslate.c: In function 'Nlm_Set3DColorMap': vibslate.c:2686:17: warning: unused variable 'testvisual' [-Wunused-variable] Boolean testvisual; ^~~~~~~~~~ vibslate.c:2685:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] int defaultdepth; ^~~~~~~~~~~~ mv vibslate.o vibslate.glo mv vibslate.tmp vibslate.o mv vibtexts.o vibtexts.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibtexts.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibtexts.c: In function 'Nlm_TextCallback': vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable] XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data; ^~~ vibtexts.c: In function 'Nlm_LoseFocusCallback': vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] XmAnyCallbackStruct *cbs; ^~~ vibtexts.c: In function 'Nlm_TabCallback': vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] XKeyEvent *event; ^~~~~ vibtexts.c: In function 'Nlm_HiddenReturnCallback': vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable] XKeyEvent *event; ^~~~~ vibtexts.c: In function 'Nlm_HiddenActivateCallback': vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable] XmAnyCallbackStruct *cbs; ^~~ mv vibtexts.o vibtexts.glo mv vibtexts.tmp vibtexts.o mv vibutils.o vibutils.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from vibutils.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibutils.c: In function 'Nlm_VibMessageHook': vibutils.c:776:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] percent = (Nlm_Int4)Nlm_GetAppProperty( "VibrantMessageWidthMax" ); ^ mv vibutils.o vibutils.glo mv vibutils.tmp vibutils.o mv vibwndws.o vibwndws.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibwndws.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibwndws.c: In function 'Nlm_SetColorMap': vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable] int defaultdepth; ^~~~~~~~~~~~ vibwndws.c: In function 'Nlm_SetWindowTitle': vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_GetWindowTitle': vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_NewWindow': vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable] int screen_num; ^~~~~~~~~~ vibwndws.c: In function 'Nlm_HideWindow': vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_ShowNormal': vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_ShowModal': vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_ShowDocument': vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ vibwndws.c: In function 'Nlm_VibMainPrelude': vibwndws.c:6800:13: warning: unused variable 'retval' [-Wunused-variable] Nlm_Int2 retval; ^~~~~~ vibwndws.c: In function 'Nlm_RemoveDyingWindows': vibwndws.c:6922:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable] Nlm_WindowTool wptr; ^~~~ At top level: vibwndws.c:1318:16: warning: 'Nlm_StandardColormap' defined but not used [-Wunused-function] static Boolean Nlm_StandardColormap(Colormap *cMap, ^~~~~~~~~~~~~~~~~~~~ mv vibwndws.o vibwndws.glo mv vibwndws.tmp vibwndws.o mv vibmain.o vibmain.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from vibmain.c:40: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vibmain.c:121:1: warning: return type defaults to 'int' [-Wimplicit-int] main (int argc, char *argv[]) ^~~~ mv vibmain.o vibmain.glo mv vibmain.tmp vibmain.o mv ncbidraw.o ncbidraw.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ncbidraw.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv ncbidraw.o ncbidraw.glo mv ncbidraw.tmp ncbidraw.o mv drawing.o drawing.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from drawing.c:128: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv drawing.o drawing.glo mv drawing.tmp drawing.o mv mapping.o mapping.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from mapping.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mapping.c: In function 'Nlm_MapRectToWorldBox': mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable] Int4 curScale; ^~~~~~~~ mv mapping.o mapping.glo mv mapping.tmp mapping.o mv picture.o picture.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/ncbidraw.h:47, from picture.c:100: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv picture.o picture.glo mv picture.tmp picture.o mv viewer.o viewer.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from viewer.c:120: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv viewer.o viewer.glo mv viewer.tmp viewer.o mv document.o document.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from document.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ document.c: In function 'Nlm_PrintDocument': document.c:4419:7: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ document.c:4423:7: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ mv document.o document.glo mv document.tmp document.o mv table.o table.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from table.c:62: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv table.o table.glo mv table.tmp table.o mv palette.o palette.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/panels.h:68, from palette.c:62: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv palette.o palette.glo mv palette.tmp palette.o mv diagnost.o diagnost.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from diagnost.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv diagnost.o diagnost.glo mv diagnost.tmp diagnost.o mv image.o image.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from image.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ image.c: In function 'ShiftXMask': image.c:840:26: warning: suggest parentheses around '+' inside '>>' [-Wparentheses] if(!((mask >> hi + low) & (unsigned long)1)) break; ~~~^~~~~ mv image.o image.glo mv image.tmp image.o mv pictur3d.o pictur3d.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/pictur3d.h:49, from ../include/ppict3d.h:49, from pictur3d.c:47: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ pictur3d.c: In function 'Nlm_DeleteFromSeg': pictur3d.c:114:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else seg->first = b->next; ^~~~ pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' if ( seg->last == b ) seg->last = bprev; ^~ mv pictur3d.o pictur3d.glo mv pictur3d.tmp pictur3d.o mv prim3d1.o prim3d1.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d1.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv prim3d1.o prim3d1.glo mv prim3d1.tmp prim3d1.o mv prim3d2.o prim3d2.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d2.c:65: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv prim3d2.o prim3d2.glo mv prim3d2.tmp prim3d2.o mv prim3d3.o prim3d3.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d3.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv prim3d3.o prim3d3.glo mv prim3d3.tmp prim3d3.o mv prim3d4.o prim3d4.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d4.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv prim3d4.o prim3d4.glo mv prim3d4.tmp prim3d4.o mv prim3d5.o prim3d5.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from prim3d5.c:66: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv prim3d5.o prim3d5.glo mv prim3d5.tmp prim3d5.o mv viewer3d.o viewer3d.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c mv viewer3d.o viewer3d.glo mv viewer3d.tmp viewer3d.o mv vibmouse.o vibmouse.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vibmouse.c:67: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv vibmouse.o vibmouse.glo mv vibmouse.tmp vibmouse.o mv netscape.o netscape.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from netscape.c:62: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ netscape.c: In function 'NS_Obtain_lock': netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable] Bool waited = False; ^~~~~~ mv netscape.o netscape.glo mv netscape.tmp netscape.o mv imagelst.o imagelst.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/imagelst.h:52, from imagelst.c:61: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mv imagelst.o imagelst.glo mv imagelst.tmp imagelst.o mv treeview.o treeview.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/treemgr.h:67, from treeview.c:91: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ treeview.c: In function 'getNodeLength': treeview.c:177:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] length= (Int4)tree_getNode(cursor, TREE_NODE_FMT_DISTANCE, &size); ^ treeview.c: In function 'getIconId': treeview.c:187:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] a= (Int4) tree_getNode(cursor, TREE_NODE_FMT_ICON, &size); ^ mv treeview.o treeview.glo mv treeview.tmp treeview.o mv shim3d.o shim3d.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c shim3d.c: In function 'OGL_AddCylinder3D': shim3d.c:918:14: warning: unused variable 'iCount' [-Wunused-variable] Nlm_Int4 iCount; ^~~~~~ shim3d.c: In function 'OGL_AddText3D': shim3d.c:1210:22: warning: unused variable 'i' [-Wunused-variable] Nlm_Int4 Length, i; ^ shim3d.c: In function 'OGL_Zoom_DragMA': shim3d.c:1770:16: warning: unused variable 'OGL_Data' [-Wunused-variable] TOGL_Data *OGL_Data = MAToOGL(ma); ^~~~~~~~ shim3d.c: In function 'write_row_callback': shim3d.c:2923:48: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized] (((float) row) / (-nRows)) * ((end - start) / 15) ~~~~~^~~~~~~~ shim3d.c:2923:48: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized] shim3d.c: In function 'SetOGLFont': shim3d.c:2381:64: warning: 'closest' may be used uninitialized in this function [-Wmaybe-uninitialized] fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]); ^ shim3d.c:2381:64: warning: 'list' may be used uninitialized in this function [-Wmaybe-uninitialized] shim3d.c: In function 'Nlm_AddHalfWorm3D': shim3d.c:3667:28: warning: 'prevlen' may be used uninitialized in this function [-Wmaybe-uninitialized] if (m == 0 || len < prevlen) { ~~~~~~~^~~~~~~~~~~~~~~~ shim3d.c:3463:26: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized] Nlm_Int4 i, j, k, m, offset; ^~~~~~ mv shim3d.o shim3d.glo mv shim3d.tmp shim3d.o mv odlbox.o odlbox.tmp s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from odlbox.c:50: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ odlbox.c: In function 'LB_onVScroll': odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable] Boolean IsGoUp=FALSE; ^~~~~~ mv odlbox.o odlbox.glo mv odlbox.tmp odlbox.o rm -f libvibrantOGL.a ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo ar: `u' modifier ignored since `D' is the default (see `U') cp -p libvibrantOGL.a ../lib ranlib ../lib/libvibrantOGL.a s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accentr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from accentr.c:297: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ accentr.c: In function 'EntrezBiostrucGet': accentr.c:2113:17: warning: unused variable 'retval' [-Wunused-variable] BiostrucPtr retval = NULL; ^~~~~~ accentr.c: In function 'EntrezGIForSeqIdFunc': accentr.c:3283:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (! gi) return OM_MSG_RET_OK; ^~ accentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' sip2 = ValNodeNew(NULL); ^~~~ accentr.c: In function 'EntrezMedlineEntryGet': accentr.c:1978:58: warning: ')' directive writing 1 byte into a region of size between 0 and 10 [-Wformat-overflow=] sprintf(errorString, "(EntrezMedlineEntryGet: %ld)",(long)uid); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from accentr.c:297: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 27 and 37 bytes into a destination of size 35 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ accentr.c: In function 'EntrezSeqEntryGet': accentr.c:2383:55: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(errorString, "(EntrezSeqEntryGet: %ld)",(long)uid); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from accentr.c:297: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 23 and 33 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accutils.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/accentr.h:125, from ../include/accutils.h:119, from accutils.c:149: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ rm -f libncbiacc.a ar cru libncbiacc.a accentr.o accutils.o ar: `u' modifier ignored since `D' is the default (see `U') cp -p libncbiacc.a ../lib ranlib ../lib/libncbiacc.a s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawseq.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from drawseq.c:3: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ drawseq.c: In function 'AddFlatNodeSymbol': drawseq.c:811:7: warning: unused variable 'symbol_height' [-Wunused-variable] Int4 symbol_height = 8; ^~~~~~~~~~~~~ drawseq.c: In function 'AddAlignBlocks': drawseq.c:970:7: warning: variable 'c_num' set but not used [-Wunused-but-set-variable] Int2 c_num; ^~~~~ drawseq.c: In function 'AddAlignFeature': drawseq.c:1369:8: warning: unused variable 'ptype' [-Wunused-variable] Uint1 ptype = 0; ^~~~~ drawseq.c: In function 'AddAlignmentMismatch': drawseq.c:1523:7: warning: variable 'i_right' set but not used [-Wunused-but-set-variable] Int4 i_right; ^~~~~~~ drawseq.c: In function 'DrawRestrictionMap': drawseq.c:1811:10: warning: unused variable 'retval' [-Wunused-variable] Boolean retval = FALSE; ^~~~~~ drawseq.c:1802:15: warning: variable 'center' set but not used [-Wunused-but-set-variable] Int4 x1, x2, center; ^~~~~~ drawseq.c: In function 'DrawFeatures': drawseq.c:2563:7: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] Int2 entityID; ^~~~~~~~ drawseq.c: In function 'DrawOneSeqLoc': drawseq.c:3020:10: warning: variable 'show_seq_label' set but not used [-Wunused-but-set-variable] Boolean show_seq_label = TRUE; /*show the label of a sequence*/ ^~~~~~~~~~~~~~ drawseq.c:3009:10: warning: variable 'ends' set but not used [-Wunused-but-set-variable] Boolean ends; ^~~~ drawseq.c: In function 'Label_GData': drawseq.c:3439:10: warning: variable 'success' set but not used [-Wunused-but-set-variable] Boolean success = FALSE; ^~~~~~~ drawseq.c: In function 'DrawEquivAlign': drawseq.c:3594:8: warning: unused variable 'my_gray_color' [-Wunused-variable] Uint1 my_gray_color[]={63, 63, 63}; ^~~~~~~~~~~~~ drawseq.c: In function 'load_align_label_rectangle': drawseq.c:4352:10: warning: variable 'found_it' set but not used [-Wunused-but-set-variable] Boolean found_it; ^~~~~~~~ drawseq.c: In function 'PicForAlignNode': drawseq.c:4558:18: warning: variable 'min_scale' set but not used [-Wunused-but-set-variable] Int4 max_width, min_scale; ^~~~~~~~~ At top level: drawseq.c:3525:22: warning: 'get_ith_arp' defined but not used [-Wunused-function] static AlignRangePtr get_ith_arp(AlignRangePtr arp, Int2 i) ^~~~~~~~~~~ drawseq.c:3511:18: warning: 'get_map_pos' defined but not used [-Wunused-function] static MapPosPtr get_map_pos(MapLayoutPtr mlp, SeqIdPtr sip) ^~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotmatrx.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dotmatrx.h:47, from dotmatrx.c:32: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fea2seg.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from fea2seg.c:74: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fstyle.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from fstyle.c:55: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg1.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smdlg1.c:53: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smdlg2.c:48: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ smdlg2.c: In function 'Nlm_CreateDlgGroup': smdlg2.c:631:12: warning: variable 'toAlign' set but not used [-Wunused-but-set-variable] Handle toAlign[3]; ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg3.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smdlg3.c:48: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smtools.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from smtools.c:48: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF styleman.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from styleman.c:48: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF stylemui.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from stylemui.c:48: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF glbpic.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from glbpic.c:22: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ glbpic.c: In function 'label_linear_mark': glbpic.c:1295:7: warning: unused variable 'tick_len' [-Wunused-variable] Int4 tick_len = TICK_LEN; ^~~~~~~~ glbpic.c: In function 'add_alignment_to_global': glbpic.c:1552:8: warning: variable 'p_val' set but not used [-Wunused-but-set-variable] Uint1 p_val; ^~~~~ At top level: glbpic.c:1748:16: warning: 'get_print_score' defined but not used [-Wunused-function] static Boolean get_print_score(FloatHi min_score, FloatHi max_score, CharPtr label, Uint1 status) ^~~~~~~~~~~~~~~ glbpic.c:584:19: warning: 'extract_align_range' defined but not used [-Wunused-function] static ValNodePtr extract_align_range(ValNodePtr PNTR arp_list, Uint1 displayOrder) ^~~~~~~~~~~~~~~~~~~ glbpic.c: In function 'get_circle_label_align': glbpic.c:2349:9: warning: 'align' may be used uninitialized in this function [-Wmaybe-uninitialized] return align; ^~~~~ In file included from ../include/glbpic.h:7, from glbpic.c:23: glbpic.c: In function 'add_alignment_to_global': ../include/picture.h:520:22: warning: 'g_top' may be used uninitialized in this function [-Wmaybe-uninitialized] #define AddTextLabel Nlm_AddTextLabel ^~~~~~~~~~~~~~~~ glbpic.c:1560:7: note: 'g_top' was declared here Int4 g_top, g_bottom; ^~~~~ glbpic.c: In function 'label_circle_mark': glbpic.c:2479:6: warning: 'first_align' may be used uninitialized in this function [-Wmaybe-uninitialized] switch(label_align) ^~~~~~ glbpic.c:2483:26: warning: 'first_left' may be used uninitialized in this function [-Wmaybe-uninitialized] if(ABS(first_left - left) < (t_width +3)) ^ glbpic.c:2469:28: warning: 'first_width' may be used uninitialized in this function [-Wmaybe-uninitialized] t_width = (first_width + width)/2; ~~~~~~~~~~~~~^~~~~~~~ glbpic.c:2473:24: warning: 'first_top' may be used uninitialized in this function [-Wmaybe-uninitialized] if(ABS(first_top - top )< (font_height+3)) ^ glbpic.c: In function 'Draw_Global': glbpic.c:1943:8: warning: 'seglen' may be used uninitialized in this function [-Wmaybe-uninitialized] Int4 seglen; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF layout.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/maputil.h:113, from ../include/jzcoll.h:123, from ../include/layout.h:3, from layout.c:2: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ layout.c: In function 'LayoutNodeFlat': layout.c:326:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable] ValNodePtr vnp, next, prev; ^~~~ layout.c: In function 'layout_uncompressed_group': layout.c:1244:20: warning: variable 'group_stop' set but not used [-Wunused-but-set-variable] Int2 group_start, group_stop; ^~~~~~~~~~ layout.c: In function 'LayoutFeatNode': layout.c:1365:17: warning: variable 'y_next' set but not used [-Wunused-but-set-variable] Int4 cur_line, y_next; ^~~~~~ layout.c:1364:17: warning: variable 'labelstyle' set but not used [-Wunused-but-set-variable] Int4 segstyle, labelstyle; ^~~~~~~~~~ layout.c:1363:10: warning: variable 'show_trunc' set but not used [-Wunused-but-set-variable] Boolean show_trunc = FALSE; ^~~~~~~~~~ layout.c:1350:10: warning: variable 'k' set but not used [-Wunused-but-set-variable] Int2 i, k; ^ layout.c: In function 'LayoutAlignNode': layout.c:2208:7: warning: unused variable 'num' [-Wunused-variable] Int4 num = 0; ^~~ At top level: layout.c:1779:16: warning: 'modify_master_line' defined but not used [-Wunused-function] static Boolean modify_master_line(ValNodePtr vnp, Int4Ptr m_left, Int4Ptr m_right, Int4 maxScale, Uint1 label_align) ^~~~~~~~~~~~~~~~~~ layout.c: In function 'GroupFeatNode': layout.c:636:14: warning: 'prev' may be used uninitialized in this function [-Wmaybe-uninitialized] prev->next = new; ~~~~~~~~~~~^~~~~ layout.c:594:35: note: 'prev' was declared here ValNodePtr my_node = NULL, curr, prev, next; ^~~~ layout.c: In function 'OrderCdsmRNA': layout.c:963:9: warning: 'm_missed' may be used uninitialized in this function [-Wmaybe-uninitialized] if(missed < m_missed) ^ layout.c:940:15: note: 'm_missed' was declared here Int2 missed, m_missed; /*number of exons missed at both end*/ ^~~~~~~~ layout.c: In function 'LayoutFeatNode': layout.c:1503:12: warning: 'p_right' may be used uninitialized in this function [-Wmaybe-uninitialized] p_right = MAX(right, p_right); layout.c:1502:11: warning: 'p_left' may be used uninitialized in this function [-Wmaybe-uninitialized] p_left = MIN(left, p_left); layout.c: In function 'LayoutAlignNode': layout.c:2215:17: warning: 'next_line' may be used uninitialized in this function [-Wmaybe-uninitialized] Int4 cur_line, next_line; ^~~~~~~~~ layout.c:2251:7: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized] i = find_align_line_number(anp, vnp->next, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ label_align, &next, &line_status_list, m_right, maxScale); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saldist.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/saldist.h:48, from saldist.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ saldist.c: In function 'AAcode': saldist.c:1003:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='A') return(1); if (car=='B') return(2); ^~ saldist.c:1003:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='A') return(1); if (car=='B') return(2); ^~ saldist.c:1004:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='C') return(3); if (car=='D') return(4); ^~ saldist.c:1004:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='C') return(3); if (car=='D') return(4); ^~ saldist.c:1005:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='E') return(5); if (car=='F') return(6); ^~ saldist.c:1005:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='E') return(5); if (car=='F') return(6); ^~ saldist.c:1006:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='G') return(7); if (car=='H') return(8); ^~ saldist.c:1006:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='G') return(7); if (car=='H') return(8); ^~ saldist.c:1007:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='I') return(9); if (car=='K') return(10); ^~ saldist.c:1007:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='I') return(9); if (car=='K') return(10); ^~ saldist.c:1008:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='L') return(11); if (car=='M') return(12); ^~ saldist.c:1008:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='L') return(11); if (car=='M') return(12); ^~ saldist.c:1009:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='N') return(13); if (car=='P') return(14); ^~ saldist.c:1009:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='N') return(13); if (car=='P') return(14); ^~ saldist.c:1010:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='Q') return(15); if (car=='R') return(16); ^~ saldist.c:1010:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='Q') return(15); if (car=='R') return(16); ^~ saldist.c:1011:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='S') return(17); if (car=='T') return(18); ^~ saldist.c:1011:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='S') return(17); if (car=='T') return(18); ^~ saldist.c:1012:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='V') return(19); if (car=='W') return(20); ^~ saldist.c:1012:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='V') return(19); if (car=='W') return(20); ^~ saldist.c:1013:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='X') return(21); if (car=='Y') return(22); ^~ saldist.c:1013:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='X') return(21); if (car=='Y') return(22); ^~ saldist.c:1014:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (car=='Z') return(23); if (car=='U') return(24); ^~ saldist.c:1014:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (car=='Z') return(23); if (car=='U') return(24); ^~ saldist.c: In function 'copy_string': saldist.c:1289:12: warning: value computed is not used [-Wunused-value] *from++; ^~~~~~~ saldist.c:1302:11: warning: value computed is not used [-Wunused-value] *from++; ^~~~~~~ saldist.c: In function 'nss_ref_complength': saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-') ^ saldist.c:1455:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] c1, c2; ^~ saldist.c:1455:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] c1, c2; ^~ saldist.c: In function 'nss_pw_complength': saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-') ^ saldist.c:1547:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] c1, c2; ^~ saldist.c:1547:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] c1, c2; ^~ saldist.c: In function 'nss_gp_complength': saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-') ^ saldist.c:1640:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable] c1, c2; ^~ saldist.c:1640:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable] c1, c2; ^~ saldist.c: In function 'SortbySimProc': saldist.c:2139:31: warning: variable 'newsalpd' set but not used [-Wunused-but-set-variable] SeqAlignPtr newsalp, newsalpd; ^~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from saldist.c:49: saldist.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ saldist.c:1853:22: warning: 'scangp_calcul' defined but not used [-Wunused-function] static Int4Ptr PNTR scangp_calcul (EditAlignDataPtr adp, Int2 seq1, Int2 seq2, Int4 from, Int4 to, Int2 group, Int2 choice, Int2 win_width) ^~~~~~~~~~~~~ saldist.c:1080:24: warning: 'FloatLomatrix' defined but not used [-Wunused-function] static FloatLoPtr PNTR FloatLomatrix (Int2 nrows, Int2 ncol) ^~~~~~~~~~~~~ saldist.c:999:13: warning: 'AAcode' defined but not used [-Wunused-function] static Int2 AAcode(Char car) ^~~~~~ saldist.c:928:16: warning: 'new_matrice' defined but not used [-Wunused-function] static Boolean new_matrice (Int2 simmatrix, CharPtr path) ^~~~~~~~~~~ saldist.c:910:14: warning: 'matrixlst' defined but not used [-Wunused-variable] static Char *matrixlst [] = {"", "idmat", ^~~~~~~~~ saldist.c: In function 'writematrixhalf.constprop': saldist.c:1225:18: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized] vnp=vnp->next; ~~~^~~~~~~~~~ saldist.c: In function 'PwDistanceItem': saldist.c:1151:18: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized] vnp=vnp->next; ~~~^~~~~~~~~~ saldist.c:1104:19: note: 'vnp' was declared here ValNodePtr vnp, ^~~ saldist.c: In function 'SortbyLenItem': saldist.c:2191:14: warning: 'mink' may be used uninitialized in this function [-Wmaybe-uninitialized] sortlst [mink] = j + 1; ^ saldist.c:2172:28: note: 'mink' was declared here Int2 j, k, mink; ^~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saled.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/saledit.h:48, from saled.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ saled.c: In function 'ReadAlignmentForSeqEntry': saled.c:3310:21: warning: unused variable 'dirty' [-Wunused-variable] dirty = FALSE; ^~~~~ saled.c:3306:21: warning: unused variable 'salp' [-Wunused-variable] SeqAlignPtr salp=NULL, ^~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from saled.c:49: saled.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from saled.c:55: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salfiles.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/saledit.h:48, from ../include/salfiles.h:48, from salfiles.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salfiles.c: In function 'NewFastaRead': salfiles.c:315:30: warning: variable 'lastsegsip' set but not used [-Wunused-but-set-variable] SeqIdPtr segsip=NULL, lastsegsip=NULL; ^~~~~~~~~~ salfiles.c: In function 'ReadAlignmentToStrings': salfiles.c:664:16: warning: unused variable 'nseq' [-Wunused-variable] Int2 nseq = 0; ^~~~ salfiles.c: In function 'MacawRead': salfiles.c:1257:15: warning: unused variable 'vnp' [-Wunused-variable] vnp = NULL; ^~~ salfiles.c: In function 'ReadLocalAlign': salfiles.c:1444:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (tmp!='\0' && !isdigit (*tmp)) ^~ salfiles.c:1444:22: note: did you mean to dereference the pointer? while (tmp!='\0' && !isdigit (*tmp)) ^ salfiles.c:1446:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] if (tmp!='\0') ^~ salfiles.c:1446:19: note: did you mean to dereference the pointer? if (tmp!='\0') ^ salfiles.c:1455:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (tmp!='\0' && !isdigit (*tmp)) ^~ salfiles.c:1455:22: note: did you mean to dereference the pointer? while (tmp!='\0' && !isdigit (*tmp)) ^ salfiles.c:1457:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] if (tmp!='\0') ^~ salfiles.c:1457:19: note: did you mean to dereference the pointer? if (tmp!='\0') ^ salfiles.c:1536:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (tmp!='\0' && !isdigit (*tmp)) ^~ salfiles.c:1536:22: note: did you mean to dereference the pointer? while (tmp!='\0' && !isdigit (*tmp)) ^ salfiles.c:1538:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] if (tmp!='\0') ^~ salfiles.c:1538:19: note: did you mean to dereference the pointer? if (tmp!='\0') ^ salfiles.c:1547:25: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (tmp!='\0' && !isdigit (*tmp)) ^~ salfiles.c:1547:22: note: did you mean to dereference the pointer? while (tmp!='\0' && !isdigit (*tmp)) ^ salfiles.c:1549:22: warning: comparison between pointer and zero character constant [-Wpointer-compare] if (tmp!='\0') ^~ salfiles.c:1549:19: note: did you mean to dereference the pointer? if (tmp!='\0') ^ salfiles.c:1370:14: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable] tmp1; ^~~~ salfiles.c: In function 'ImportFromFile': salfiles.c:2072:20: warning: unused variable 'sep' [-Wunused-variable] SeqEntryPtr sep = NULL; ^~~ salfiles.c:2071:20: warning: unused variable 'sap' [-Wunused-variable] SeqAnnotPtr sap = NULL; ^~~ salfiles.c: In function 'FindSeqEntryForSeqIdCallback': salfiles.c:2672:12: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (SeqIdForSameBioseq(cip->sip, sip)) ^~ salfiles.c:2674:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' cip->bsp = bsp; ^~~ salfiles.c: In function 'sesp_to_pept': salfiles.c:2713:18: warning: unused variable 'bufferPtr' [-Wunused-variable] bufferPtr = NULL; ^~~~~~~~~ salfiles.c: In function 'SaveFeatProc': salfiles.c:3387:22: warning: variable 'handled' set but not used [-Wunused-but-set-variable] Int2 handled; ^~~~~~~ salfiles.c: In function 'CCReadAnythingLoop': salfiles.c:3685:16: warning: variable 'entityID' set but not used [-Wunused-but-set-variable] Uint2 entityID; ^~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salfiles.c:48: salfiles.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ salfiles.c:501:19: warning: 'get_lens_fromseqalign' defined but not used [-Wunused-function] static ValNodePtr get_lens_fromseqalign (SeqAlignPtr salp) ^~~~~~~~~~~~~~~~~~~~~ salfiles.c: In function 'CCDownloadProc': salfiles.c:2218:9: warning: 'new_sep' may be used uninitialized in this function [-Wmaybe-uninitialized] vnp = SeqEntryToSeqLoc (sep, &n, adp->mol_type); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salfiles.c:2286:15: note: 'new_sep' was declared here SeqEntryPtr new_sep; ^~~~~~~ salfiles.c: In function 'NewFastaRead.constprop': salfiles.c:460:6: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized] if (sip!=NULL) ^ salfiles.c: In function 'GapFastaRead': salfiles.c:654:16: warning: 'seqstr' may be used uninitialized in this function [-Wmaybe-uninitialized] seqstr; ^~~~~~ salfiles.c:724:15: warning: 'startp' may be used uninitialized in this function [-Wmaybe-uninitialized] if (!startp) { ^ salfiles.c:660:16: note: 'startp' was declared here Boolean startp; ^~~~~~ salfiles.c: In function 'ReadLocalAlignment': salfiles.c:1287:3: warning: 'seqvnp' may be used uninitialized in this function [-Wmaybe-uninitialized] ValNodeFree (seqvnp); ^~~~~~~~~~~~~~~~~~~~ salfiles.c:1113:19: note: 'seqvnp' was declared here ValNodePtr vnp, seqvnp; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpanel.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/saledit.h:48, from salpanel.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salpanel.c: In function 'go_to_next_to_draw': salpanel.c:331:17: warning: statement with no effect [-Wunused-value] offsettmp; ^~~~~~~~~ salpanel.c: In function 'next_to_draw': salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if ( curstr != NULL ) ^ salpanel.c: In function 'AssociatePropagatedSubloc': salpanel.c:3131:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] ValNodePtr vnp; ^~~ salpanel.c: In function 'FeaturePropagateForm': salpanel.c:4674:15: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] PrompT ppt; ^~~ salpanel.c:4669:15: warning: variable 'b' set but not used [-Wunused-but-set-variable] ButtoN b; ^ salpanel.c: In function 'OkToContinueWithFeatureApply': salpanel.c:6103:14: warning: unused variable 'num_missing' [-Wunused-variable] Int4 num_missing = 0, seq_num, start_num; ^~~~~~~~~~~ salpanel.c: In function 'DoApplyFeatureToAlignment': salpanel.c:6219:31: warning: unused variable 'found_null' [-Wunused-variable] Boolean found_null = FALSE; ^~~~~~~~~~ salpanel.c: In function 'ApplyFeatureToAlignment': salpanel.c:6421:31: warning: variable 'b' set but not used [-Wunused-but-set-variable] ButtoN b; ^ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salpanel.c:45: salpanel.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from salpanel.c:52: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ salpanel.c:5059:13: warning: 'BatchApplyFeatureDetailsMessage' defined but not used [-Wunused-function] static void BatchApplyFeatureDetailsMessage (DialoG d, Int2 mssg) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salpanel.c:224:13: warning: 'get_client_rectxy' defined but not used [-Wunused-function] static void get_client_rectxy (PaneL p, RectPtr prc, Int2 x, Int2 y) ^~~~~~~~~~~~~~~~~ salpanel.c:113:14: warning: 'leftOvalFillSym' defined but not used [-Wunused-variable] static Uint1 leftOvalFillSym [] = { ^~~~~~~~~~~~~~~ salpanel.c:110:14: warning: 'rightOvalFillSym' defined but not used [-Wunused-variable] static Uint1 rightOvalFillSym [] = { ^~~~~~~~~~~~~~~~ salpanel.c:107:14: warning: 'leftOvalSym' defined but not used [-Wunused-variable] static Uint1 leftOvalSym [] = { ^~~~~~~~~~~ salpanel.c:104:14: warning: 'rightOvalSym' defined but not used [-Wunused-variable] static Uint1 rightOvalSym [] = { ^~~~~~~~~~~~ salpanel.c:101:14: warning: 'downTriFillSym' defined but not used [-Wunused-variable] static Uint1 downTriFillSym [] = { ^~~~~~~~~~~~~~ salpanel.c:98:14: warning: 'upTriFillSym' defined but not used [-Wunused-variable] static Uint1 upTriFillSym [] = { ^~~~~~~~~~~~ salpanel.c:89:14: warning: 'ovalFillSym' defined but not used [-Wunused-variable] static Uint1 ovalFillSym [] = { ^~~~~~~~~~~ salpanel.c:86:14: warning: 'diamondFillSym' defined but not used [-Wunused-variable] static Uint1 diamondFillSym [] = { ^~~~~~~~~~~~~~ salpanel.c:80:14: warning: 'downTriSym' defined but not used [-Wunused-variable] static Uint1 downTriSym [] = { ^~~~~~~~~~ salpanel.c:77:14: warning: 'upTriSym' defined but not used [-Wunused-variable] static Uint1 upTriSym [] = { ^~~~~~~~ salpanel.c:68:14: warning: 'ovalSym' defined but not used [-Wunused-variable] static Uint1 ovalSym [] = { ^~~~~~~ salpanel.c:65:14: warning: 'diamondSym' defined but not used [-Wunused-variable] static Uint1 diamondSym [] = { ^~~~~~~~~~ salpanel.c: In function 'draw_feat.isra.16.part.17': salpanel.c:1939:17: warning: 'col1' may be used uninitialized in this function [-Wmaybe-uninitialized] Int4 col1; ^~~~ salpanel.c: In function 'on_draw': salpanel.c:2527:23: warning: 'draw_diff' may be used uninitialized in this function [-Wmaybe-uninitialized] draw_seq (adp, curssp, from_inseq, drw_width, ptlh, curstr, draw_diff, masterstr, TRUE, itemsubtype, FALSE); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salparam.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salparam.c: In function 'mergelst': salparam.c:1325:20: warning: variable 'val' set but not used [-Wunused-but-set-variable] Boolean val; ^~~ salparam.c: In function 'unmergelst': salparam.c:1340:20: warning: variable 'dbdp' set but not used [-Wunused-but-set-variable] DialogBoxDataPtr dbdp; ^~~~ salparam.c: In function 'FormulaDialog': salparam.c:1398:36: warning: variable 'b5' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3, b4, b5; ^~ salparam.c: In function 'JK_NTPattern2Ex': salparam.c:1596:19: warning: variable 'debug_str' set but not used [-Wunused-but-set-variable] CharPtr debug_str; ^~~~~~~~~ salparam.c: In function 'DotPlotBtn': salparam.c:1936:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] Int2 status; ^~~~~~ salparam.c: In function 'DotPlotDialog': salparam.c:1973:20: warning: variable 'bt1' set but not used [-Wunused-but-set-variable] ButtoN bt1, bt2; ^~~ salparam.c: In function 'DotPlotItem': salparam.c:2004:22: warning: variable 'status' set but not used [-Wunused-but-set-variable] Int2 status; ^~~~~~ salparam.c: In function 'SelectSeqFunc': salparam.c:2308:20: warning: variable 'str' set but not used [-Wunused-but-set-variable] CharPtr str; ^~~ salparam.c: In function 'HighlightSelectionFunc': salparam.c:2344:22: warning: variable 'wdp' set but not used [-Wunused-but-set-variable] SeqEditViewFormPtr wdp; ^~~ salparam.c: In function 'PropagateFeatureProc': salparam.c:2623:25: warning: variable 'iID' set but not used [-Wunused-but-set-variable] Uint2 eID, iID, ^~~ salparam.c:2614:20: warning: variable 'salp' set but not used [-Wunused-but-set-variable] SeqAlignPtr salp; ^~~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salparam.c:49: salparam.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from salparam.c:58: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ salparam.c: In function 'FileInProc': salparam.c:782:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d %ld", &n, &lens); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c: In function 'DotPlotBtn': salparam.c:1951:13: warning: 'sep' may be used uninitialized in this function [-Wmaybe-uninitialized] bsp = (BioseqPtr) sep->data.ptrvalue; ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c: In function 'SalsaExportDialog': salparam.c:2258:19: warning: '%ld' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf (str2, "%ld", (long) adp->int4value); ^~~ salparam.c:2258:18: note: directive argument in the range [-2147483648, 2147483647] sprintf (str2, "%ld", (long) adp->int4value); ^~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c:2261:19: warning: '%ld' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf (str2, "%ld", (long) adp->int4value2); ^~~ salparam.c:2261:18: note: directive argument in the range [-2147483648, 2147483647] sprintf (str2, "%ld", (long) adp->int4value2); ^~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 12 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c: In function 'PropagateFeatDialog': salparam.c:2964:32: warning: '%ld' directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=] sprintf (str2, " (%ld..%ld)", (long)start, (long)stop); ^~~ salparam.c:2964:24: note: directive argument in the range [-2147483647, 2147483647] sprintf (str2, " (%ld..%ld)", (long)start, (long)stop); ^~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 28 bytes into a destination of size 24 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ salparam.c:2962:32: warning: '%ld' directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=] sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop); ^~~ salparam.c:2962:24: note: directive argument in the range [-2147483647, 2147483647] sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/salsa.h:48, from ../include/salparam.h:48, from salparam.c:44: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 21 and 41 bytes into a destination of size 24 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsa.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/salsa.h:48, from salsa.c:43: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ salsa.c: In function 'SelectSubsProc': salsa.c:2140:23: warning: variable 'svpp' set but not used [-Wunused-but-set-variable] SeqEditViewProcsPtr svpp=NULL; ^~~~ salsa.c: In function 'SetSeqInfo': salsa.c:3195:17: warning: unused variable 'vnp' [-Wunused-variable] ValNodePtr vnp = NULL; ^~~ salsa.c: In function 'SetupAlignDataSap': salsa.c:3410:16: warning: variable 'entityID_sap' set but not used [-Wunused-but-set-variable] Uint2 entityID_sap; ^~~~~~~~~~~~ salsa.c: In function 'get_bestpos_formerge': salsa.c:4304:17: warning: variable 'insert_after' set but not used [-Wunused-but-set-variable] insert_after=FALSE; ^~~~~~~~~~~~ salsa.c:4303:17: warning: variable 'insert_before' set but not used [-Wunused-but-set-variable] Boolean insert_before=FALSE, ^~~~~~~~~~~~~ salsa.c: In function 'CreateSeqAlignViewForm': salsa.c:4689:22: warning: variable 'mergebtn' set but not used [-Wunused-but-set-variable] ButtoN mergebtn; ^~~~~~~~ salsa.c: In function 'AlgEditFunc': salsa.c:4976:23: warning: unused variable 'wdp' [-Wunused-variable] SeqEditViewFormPtr wdp = NULL; ^~~ salsa.c:4974:23: warning: unused variable 'w' [-Wunused-variable] WindoW w = NULL; ^ salsa.c: In function 'OldAlignmentEditor': salsa.c:5106:16: warning: variable 'rval' set but not used [-Wunused-but-set-variable] Int2 rval; ^~~~ salsa.c: In function 'LaunchAnnotAlignEditor': salsa.c:5293:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] Int2 handled; ^~~~~~~ salsa.c: In function 'LaunchAlignEditor': salsa.c:5310:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] Int2 handled; ^~~~~~~ salsa.c: In function 'LaunchAlignViewer': salsa.c:5327:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable] Int2 handled; ^~~~~~~ salsa.c: In function 'LaunchAlignEditorFromDesktop': salsa.c:5342:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] OMProcControlPtr ompcp; ^~~~~ salsa.c: In function 'LaunchAlignEditorFromDesktop2': salsa.c:5359:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] OMProcControlPtr ompcp; ^~~~~ salsa.c: In function 'InsertSeqProc': salsa.c:5538:17: warning: variable 'cnclbt' set but not used [-Wunused-but-set-variable] ButtoN insbt, cnclbt; ^~~~~~ salsa.c:5536:10: warning: variable 'insprt' set but not used [-Wunused-but-set-variable] PrompT insprt; ^~~~~~ salsa.c: In function 'SeqAlignBestHit': salsa.c:5605:22: warning: variable 'last' set but not used [-Wunused-but-set-variable] Int4 last; ^~~~ salsa.c: In function 'SeqAlignStartUpdate': salsa.c:5791:22: warning: variable 'k' set but not used [-Wunused-but-set-variable] Int2 index, k, j; ^ salsa.c:5790:15: warning: variable 'start' set but not used [-Wunused-but-set-variable] start; ^~~~~ salsa.c:5789:15: warning: variable 'len_sum' set but not used [-Wunused-but-set-variable] Int4 len_sum, ^~~~~~~ salsa.c:5786:15: warning: variable 'lenp' set but not used [-Wunused-but-set-variable] Int4Ptr lenp, ^~~~ salsa.c:5785:15: warning: variable 'pre' set but not used [-Wunused-but-set-variable] SeqIdPtr pre, sip, next; ^~~ salsa.c: In function 'CCNormalizeSeqAlignId': salsa.c:6746:23: warning: unused variable 'gi' [-Wunused-variable] Int4 gi = 0; ^~ salsa.c:6745:17: warning: unused variable 'missing_fmt' [-Wunused-variable] CharPtr missing_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\n"; ^~~~~~~~~~~ salsa.c:6744:17: warning: unused variable 'missing_cont_fmt' [-Wunused-variable] CharPtr missing_cont_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\nContinue anyway?\n"; ^~~~~~~~~~~~~~~~ salsa.c: In function 'ValidateSeqAlignandACCEx': salsa.c:7106:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable] MsgAnswer ans; ^~~ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/salpanel.h:53, from salsa.c:48: salsa.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr.h:266, from salsa.c:68: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ salsa.c:87:13: warning: 'InsertSequenceDlg' declared 'static' but never defined [-Wunused-function] static void InsertSequenceDlg (ButtoN b); ^~~~~~~~~~~~~~~~~ salsa.c:5973:13: warning: 'SWPrintFarpointerAln' defined but not used [-Wunused-function] static void SWPrintFarpointerAln(SeqAlignPtr sap, FILE *fp) ^~~~~~~~~~~~~~~~~~~~ salsa.c:2360:13: warning: 'MakeCdRgnrProc' defined but not used [-Wunused-function] static void MakeCdRgnrProc (IteM i) { ^~~~~~~~~~~~~~ salsa.c:2356:13: warning: 'MakeCdRgnProc' defined but not used [-Wunused-function] static void MakeCdRgnProc (IteM i) { ^~~~~~~~~~~~~ salsa.c:1760:13: warning: 'AcceptCloseWindowButton' defined but not used [-Wunused-function] static void AcceptCloseWindowButton (ButtoN b) ^~~~~~~~~~~~~~~~~~~~~~~ In file included from salsa.c:52: ../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable] static CharPtr GBFeat[number_GBFeat] = { ^~~~~~ In file included from ../include/ncbi.h:65, from ../include/salsa.h:48, from salsa.c:43: salsa.c: In function 'ExportFASTAForUnselectedUpdates': ../include/ncbifile.h:113:19: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized] #define FileClose Nlm_FileClose ^~~~~~~~~~~~~ salsa.c:6350:23: note: 'fp' was declared here FILE *fp; ^~ In file included from ../include/ncbi.h:65, from ../include/salsa.h:48, from salsa.c:43: salsa.c: In function 'ExportBadAlignments': ../include/ncbifile.h:113:19: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized] #define FileClose Nlm_FileClose ^~~~~~~~~~~~~ salsa.c:6318:23: note: 'fp' was declared here FILE *fp; ^~ salsa.c: In function 'SeqAlignBestHit.isra.17': salsa.c:5746:23: warning: 'nctr' may be used uninitialized in this function [-Wmaybe-uninitialized] *nonly = nctr+beg+end; ~~~~^~~~ salsa.c:5748:24: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized] *nonly = -(beg+end); ~~~~^~~~~ salsa.c:5746:23: warning: 'beg' may be used uninitialized in this function [-Wmaybe-uninitialized] *nonly = nctr+beg+end; ~~~~^~~~ salsa.c: In function 'BioseqEditMsgFunc': salsa.c:912:51: warning: 'anp' may be used uninitialized in this function [-Wmaybe-uninitialized] ssp = SelStructNew (anp->seq_entityID, anp->bsp_itemID, OBJ_BIOSEQ, from, to, anp->sip, Seq_strand_plus, FALSE); ~~~^~~~~~~~~~~~ salsa.c:890:20: note: 'anp' was declared here AlignNodePtr anp; ^~~ salsa.c: In function 'DeleteProc': salsa.c:1955:165: warning: 'sap' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((adp->sap1_original && (FindSeqIdinSeqAlign ((SeqAlignPtr)adp->sap1_original->data, SeqLocId(slp))) > 0) || (FindSeqIdinSeqAlign ((SeqAlignPtr)sap->data, SeqLocId(slp))) > 0) ~~~^~~~~~ salsa.c: In function 'SkipThisWindowProc': salsa.c:4591:6: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized] LaunchAlignViewer(salp); ^~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqfltr.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from seqfltr.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ seqfltr.c: In function 'FilterSeq': seqfltr.c:259:21: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized] sgp->values = (Pointer) fptr; ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgraph.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from seqgraph.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ seqgraph.c: In function 'EndPointDialogToEndPointValNode': seqgraph.c:140:10: warning: 'eplist' may be used uninitialized in this function [-Wmaybe-uninitialized] return (Pointer) eplist; ^~~~~~~~~~~~~~~~ seqgraph.c: In function 'SeqLocGraphViewProc': seqgraph.c:1155:17: warning: 'eplist' may be used uninitialized in this function [-Wmaybe-uninitialized] if (eplist->next == NULL) ~~~~~~^~~~~~ seqgraph.c: In function 'CutOffProc': seqgraph.c:911:11: warning: 'fval' may be used uninitialized in this function [-Wmaybe-uninitialized] val = fval/2; ~~~~^~~~~~~~ seqgraph.c:841:14: note: 'fval' was declared here FloatHi fval; ^~~~ seqgraph.c:1050:20: warning: 'eplist' may be used uninitialized in this function [-Wmaybe-uninitialized] eplist->next = NULL; ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgrphx.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from seqgrphx.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ seqgrphx.c:301:13: warning: 'CleanupGCFilterForm' defined but not used [-Wunused-function] static void CleanupGCFilterForm (GraphiC g, VoidPtr data) ^~~~~~~~~~~~~~~~~~~ seqgrphx.c:152:25: warning: 'FilterMsgFunc' defined but not used [-Wunused-function] static Int2 LIBCALLBACK FilterMsgFunc (OMMsgStructPtr ommsp) ^~~~~~~~~~~~~ seqgrphx.c:28:25: warning: 'MatrixMsgFunc' defined but not used [-Wunused-function] static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp) ^~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmtrx.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from seqmtrx.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ seqmtrx.c:387:20: warning: 'MatrixSearch' defined but not used [-Wunused-function] static SeqGraphPtr MatrixSearch (BioseqPtr bsp, Int2 matrixtype) ^~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpcc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from seqpcc.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ seqpcc.c: In function 'PCCProc': seqpcc.c:229:14: warning: 'pbsp' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((spp = SeqPortNew (pbsp, start, end, 0, Seq_code_iupacaa)) != NULL) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqanal.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from seqanal.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aacomp.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objres.h:73, from aacomp.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ aacomp.c:86:20: warning: 'AACGraph' defined but not used [-Wunused-function] static SeqGraphPtr AACGraph (SeqPortPtr spp, Int4 start, Int4 end, Int4 window, ^~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqscrl.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from ../include/seqscrl.h:4, from seqscrl.c:1: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valdlg.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/vibforms.h:46, from valdlg.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ valdlg.c: In function 'ClickRulesDoc': valdlg.c:373:22: warning: unused variable 'scroll_pos' [-Wunused-variable] Int2 scroll_pos = 0; ^~~~~~~~~~ valdlg.c:372:22: warning: unused variable 'sb_vert' [-Wunused-variable] BaR sb_vert = NULL; ^~~~~~~ valdlg.c: In function 'UpdateRuleList': valdlg.c:479:26: warning: unused variable 'last_cr' [-Wunused-variable] CommentRulePtr new_cr, last_cr = NULL; ^~~~~~~ valdlg.c: In function 'SaveRuleChanges': valdlg.c:540:23: warning: variable 'dlg' set but not used [-Wunused-but-set-variable] CommentSetDlgPtr dlg; ^~~ valdlg.c: In function 'LaunchCommentRulesEditor': valdlg.c:553:23: warning: unused variable 'm' [-Wunused-variable] MenU m; ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsm.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/vsmpriv.h:48, from vsm.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vsm.c: In function 'VSMDrawAbout': vsm.c:1436:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (vsmp->title != NULL) ^~ vsm.c:1438:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (vsmp->aboutinfo != NULL) ^~ vsm.c: In function 'VSMAboutProc': vsm.c:1466:8: warning: variable 'p' set but not used [-Wunused-but-set-variable] PaneL p; ^ vsm.c: In function 'VSeqMgrCreateMainWindow': vsm.c:1569:12: warning: variable 'omp' set but not used [-Wunused-but-set-variable] ObjMgrPtr omp; ^~~ vsm.c: In function 'VSeqMgrPopulateMain': vsm.c:1710:13: warning: variable 'atp' set but not used [-Wunused-but-set-variable] AsnTypePtr atp; ^~~ vsm.c: In function 'VSMGatherPictProc': vsm.c:2193:15: warning: variable 'bssp' set but not used [-Wunused-but-set-variable] BioseqSetPtr bssp; ^~~~ vsm.c:2188:30: warning: variable 'bottom' set but not used [-Wunused-but-set-variable] Int4 top, lineheight, left, bottom, width, maxwidth; ^~~~~~ vsm.c: In function 'VSMAddPictureToEntity': vsm.c:2821:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] Pointer ptr; ^~~ vsm.c:2820:13: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] ValNodePtr vnp; ^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmfile.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/vsmpriv.h:48, from vsmfile.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vsmfile.c: In function 'VSMGenericBinAsnOpen': vsmfile.c:259:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ButtoN b; ^ vsmfile.c: In function 'VSMGenericFastaSave': vsmfile.c:395:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] Uint1 code; ^~~~ vsmfile.c: In function 'VSMFastaProtSaveWithProduct': vsmfile.c:527:11: warning: variable 'code' set but not used [-Wunused-but-set-variable] Uint1 code; ^~~~ vsmfile.c: In function 'VSMSaveSetsAsFiles': vsmfile.c:1368:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable] OMProcControlPtr ompcp; ^~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmutil.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vsmutil.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vsmutil.c: In function 'GetDocPosForError': vsmutil.c:1743:18: warning: variable 'val' set but not used [-Wunused-but-set-variable] Int2 val; ^~~ At top level: vsmutil.c:1628:16: warning: 'MakeFieldReports' defined but not used [-Wunused-function] static Boolean MakeFieldReports (ValNodePtr report_list, ValNodePtr field_list, FILE *fp) ^~~~~~~~~~~~~~~~ vsmutil.c:387:20: warning: 'GetSeqDescGivenIDs' defined but not used [-Wunused-function] static SeqDescrPtr GetSeqDescGivenIDs (Uint2 entityID, Uint4 itemID, Uint2 itemtype) ^~~~~~~~~~~~~~~~~~ vsmutil.c: In function 'ContinueProc': vsmutil.c:2256:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [i] = 0; ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2255:5: note: within this loop for (i = SEV_NONE; i <= SEV_MAX; i++) { ^~~ vsmutil.c: In function 'RevalidateProc': vsmutil.c:2223:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [i] = 0; ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2222:5: note: within this loop for (i = SEV_NONE; i <= SEV_MAX; i++) { ^~~ vsmutil.c: In function 'SetVerbosityAndRepopulate': vsmutil.c:2297:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [i] = 0; ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2296:5: note: within this loop for (i = SEV_NONE; i <= SEV_MAX; i++) { ^~~ vsmutil.c: In function 'ClearValidateWindow': vsmutil.c:613:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [sev] = 0; ~~~~~~~~~~~~~~~~~~^~~ vsmutil.c:612:7: note: within this loop for (sev = SEV_NONE; sev <= SEV_MAX; sev++) { ^~~ vsmutil.c: In function 'CreateValidateWindowExExEx': vsmutil.c:2620:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations] vep->counts [i] = 0; ~~~~~~~~~~~~~~~~^~~ vsmutil.c:2619:9: note: within this loop for (i = SEV_NONE; i <= SEV_MAX; i++) { ^~~ vsmutil.c: In function 'ContinueProc': vsmutil.c:2256:19: warning: array subscript 6 is above array bounds of 'Nlm_Int4[6]' {aka 'int[6]'} [-Warray-bounds] vep->counts [i] = 0; ~~~~~~~~~~~~^~~ vsmutil.c: In function 'RevalidateProc': vsmutil.c:2223:19: warning: array subscript 6 is above array bounds of 'Nlm_Int4[6]' {aka 'int[6]'} [-Warray-bounds] vep->counts [i] = 0; ~~~~~~~~~~~~^~~ vsmutil.c: In function 'SetVerbosityAndRepopulate': vsmutil.c:2297:19: warning: array subscript 6 is above array bounds of 'Nlm_Int4[6]' {aka 'int[6]'} [-Warray-bounds] vep->counts [i] = 0; ~~~~~~~~~~~~^~~ vsmutil.c: In function 'ClearValidateWindow': vsmutil.c:613:21: warning: array subscript 6 is above array bounds of 'Nlm_Int4[6]' {aka 'int[6]'} [-Warray-bounds] vep->counts [sev] = 0; ~~~~~~~~~~~~^~~~~ vsmutil.c: In function 'CreateValidateWindowExExEx': vsmutil.c:2620:23: warning: array subscript 6 is above array bounds of 'Nlm_Int4[6]' {aka 'int[6]'} [-Warray-bounds] vep->counts [i] = 0; ~~~~~~~~~~~~^~~ vsmutil.c: In function 'ShowValidateDoc': vsmutil.c:2758:61: warning: ' REJECT: ' directive writing 14 bytes into a region of size between 13 and 43 [-Wformat-overflow=] sprintf (str, "INFO: %ld WARNING: %ld ERROR: %ld REJECT: %ld", ^~~~~~~~~~~~~~ vsmutil.c:2758:17: note: directive argument in the range [-2147483648, 2147483647] sprintf (str, "INFO: %ld WARNING: %ld ERROR: %ld REJECT: %ld", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from vsmutil.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 53 and 93 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvgraph.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvgraph.c:177: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ udvgraph.c: In function 'UDV_click_item': udvgraph.c:877:9: warning: unused variable 'IsTransNeeded' [-Wunused-variable] Boolean IsTransNeeded=FALSE; ^~~~~~~~~~~~~ udvgraph.c: In function 'UDV_SendBSPSelectMsg': udvgraph.c:1230:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable] Boolean bDeselectAll=TRUE; ^~~~~~~~~~~~ udvgraph.c:1226:30: warning: variable 'bsp_coord_old' set but not used [-Wunused-but-set-variable] Int4 first_bsp_coord, bsp_coord_old,old_pos; ^~~~~~~~~~~~~ udvgraph.c: In function 'UDV_draw_helixDNA': udvgraph.c:1827:15: warning: variable 'cyChar_2' set but not used [-Wunused-but-set-variable] Int2 cxChar_2,cyChar_2; ^~~~~~~~ udvgraph.c: In function 'draw_logo': udvgraph.c:1940:38: warning: variable 'cyGlobal' set but not used [-Wunused-but-set-variable] Int2 pos,cxChar=7,cyChar=13,cxGlobal,cyGlobal; ^~~~~~~~ udvgraph.c: In function 'UDV_draw_CDS_minus': udvgraph.c:2337:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] Boolean bGiForProductOk=FALSE; ^~~~~~~~~~~~~~~ udvgraph.c:2332:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable] numivals2=0, ^~~~~~~~~ udvgraph.c: In function 'UDV_draw_CDS_plus': udvgraph.c:2461:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable] Boolean bGiForProductOk=FALSE; ^~~~~~~~~~~~~~~ udvgraph.c: In function 'UDV_draw_panel': udvgraph.c:4111:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(vdp->vgp->MasterViewer == SAMVIEWDDV) ^~ udvgraph.c:4113:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' Row = ViewMgr_GetRow(svpp, vdp->userkey); ^~~ udvgraph.c:4041:21: warning: unused variable 'vnp_seqinfo' [-Wunused-variable] ValNodePtr vnp_seqinfo=NULL; ^~~~~~~~~~~ udvgraph.c:4035:45: warning: variable 'nLinesDraw' set but not used [-Wunused-but-set-variable] Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw; ^~~~~~~~~~ udvgraph.c:4035:37: warning: variable 'nTotRow' set but not used [-Wunused-but-set-variable] Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw; ^~~~~~~ At top level: udvgraph.c:3921:14: warning: 'UDV_calc_decalRC' defined but not used [-Wunused-function] static Int4 UDV_calc_decalRC(ValNodePtr ParaG,Int4 ScrollPos, ^~~~~~~~~~~~~~~~ udvgraph.c:3433:14: warning: 'UDV_Draw_features_label' defined but not used [-Wunused-function] static void UDV_Draw_features_label(UnDViewerGraphDataPtr GrData, ^~~~~~~~~~~~~~~~~~~~~~~ udvgraph.c:1298:13: warning: 'UDV_AutoSelectAllSeq' defined but not used [-Wunused-function] static void UDV_AutoSelectAllSeq(ViewerDialogDataPtr vdp,Boolean bSelect) ^~~~~~~~~~~~~~~~~~~~ udvgraph.c:971:14: warning: 'UDV_draw_horz_cursor' defined but not used [-Wunused-function] static void UDV_draw_horz_cursor(UnDViewerGraphDataPtr GrData, ^~~~~~~~~~~~~~~~~~~~ udvgraph.c:948:13: warning: 'UDV_draw_vert_cursor' defined but not used [-Wunused-function] static void UDV_draw_vert_cursor(RecT rcClip,PoinT pos) ^~~~~~~~~~~~~~~~~~~~ In file included from ../include/asn2ff6.h:142, from udvgraph.c:180: ../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = NULL; ^~~ ../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "asnprt.h60"; ^~~~~~~~~~~ udvgraph.c: In function 'UDV_GetCurrentDispRange': udvgraph.c:638:15: warning: 'pgp' may be used uninitialized in this function [-Wmaybe-uninitialized] *from_bsp=pgp->StartLetter; ~~~^~~~~~~~~~~~~ udvgraph.c: In function 'UDV_select_feature': udvgraph.c:813:25: warning: ' [from ' directive writing 7 bytes into a region of size between 1 and 255 [-Wformat-overflow=] sprintf(szTmp,"%s [from %d to %d]. ", ^~~~~~~ udvgraph.c:813:22: note: directive argument in the range [-2147483647, 2147483647] sprintf(szTmp,"%s [from %d to %d]. ", ^~~~~~~~~~~~~~~~~~~~~~ udvgraph.c:813:22: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvgraph.c:177: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 17 and 291 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ udvgraph.c:808:25: warning: ' [from ' directive writing 7 bytes into a region of size between 1 and 255 [-Wformat-overflow=] sprintf(szTmp,"%s [from %d to %d in %d segments]. ", ^~~~~~~ udvgraph.c:808:22: note: directive argument in the range [-2147483647, 2147483647] sprintf(szTmp,"%s [from %d to %d in %d segments]. ", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ udvgraph.c:808:22: note: directive argument in the range [-2147483647, 2147483647] udvgraph.c:808:22: note: directive argument in the range [2, 32767] In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvgraph.c:177: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 31 and 309 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ udvgraph.c: In function 'UDV_Draw_features': udvgraph.c:3203:58: warning: 'idx6' may be used uninitialized in this function [-Wmaybe-uninitialized] UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y, ~~~~~~~^~~~~~ udvgraph.c:3203:38: warning: 'idx5' may be used uninitialized in this function [-Wmaybe-uninitialized] UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y, ~~~~~~~~^~~~~~ udvgraph.c:3196:47: warning: 'idx4' may be used uninitialized in this function [-Wmaybe-uninitialized] stop2=_min_(pgp->StopLetter,context->ivals[idx4]); ^ udvgraph.c:3189:58: warning: 'idx3' may be used uninitialized in this function [-Wmaybe-uninitialized] UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y, ~~~~~~~^~~~~~ udvgraph.c:3189:38: warning: 'idx2' may be used uninitialized in this function [-Wmaybe-uninitialized] UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y, ~~~~~~~~^~~~~~ udvgraph.c:3182:49: warning: 'idx1' may be used uninitialized in this function [-Wmaybe-uninitialized] start2=_max_(pgp->StartLetter,context->ivals[idx1]); ^ In file included from ../include/udviewer.h:225, from udvgraph.c:177: ../include/udvdef.h:187:40: warning: 'stop_x2' may be used uninitialized in this function [-Wmaybe-uninitialized] #define _max_(a,b) ((a)>=(b)?(a):(b)) ^ udvgraph.c:2803:21: note: 'stop_x2' was declared here Int2 start_x,stop_x,stop_x2, /*id. but in pixels*/ ^~~~~~~ udvgraph.c: In function 'UDV_ClickProc': udvgraph.c:1461:8: warning: 'vmp' may be used uninitialized in this function [-Wmaybe-uninitialized] UDV_SelectFeatInFeatDlg(vmp,entityID,itemID); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvopen.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvopen.c:101: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ udvopen.c: In function 'UDV_FileOpen': udvopen.c:875:16: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ButtoN b,b1,b2; ^~ udvopen.c:875:11: warning: variable 'b' set but not used [-Wunused-but-set-variable] ButtoN b,b1,b2; ^ udvopen.c: In function 'UDV_CreateListBioseqDlg': udvopen.c:1180:9: warning: the address of 'szName' will always evaluate as 'true' [-Waddress] if (szName){ ^~~~~~ udvopen.c: In function 'UDV_FOpenCancelProc': udvopen.c:792:23: warning: 'vmp' may be used uninitialized in this function [-Wmaybe-uninitialized] UDV_set_PullMenus(&vmp->MainMenu,TRUE); ^~~~~~~~~~~~~~ udvopen.c: In function 'UDV_analyze_SEP_for_open': udvopen.c:325:15: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized] vmp->entityID=entityID; ~~~~~~~~~~~~~^~~~~~~~~ udvopen.c:327:14: warning: 'dataptr' may be used uninitialized in this function [-Wmaybe-uninitialized] vmp->dataptr=dataptr; ~~~~~~~~~~~~^~~~~~~~ udvopen.c: In function 'UDV_FOpenAcceptProc': udvopen.c:855:23: warning: 'vmp' may be used uninitialized in this function [-Wmaybe-uninitialized] UDV_set_PullMenus(&vmp->MainMenu,TRUE); ^~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvpanel.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objsset.h:48, from ../include/explore.h:49, from ../include/udviewer.h:209, from udvpanel.c:197: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ udvpanel.c: In function 'UDV_GotoBtnProc': udvpanel.c:2080:22: warning: variable 'old_ivalue' set but not used [-Wunused-but-set-variable] Int4 iValue,old_ivalue,line_num,from_bsp,to_bsp, ^~~~~~~~~~ udvpanel.c:2079:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable] ValNodePtr vnp; ^~~ udvpanel.c: In function 'CreateMainControls': udvpanel.c:2165:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable] Int2 cxChar,cyChar,Margins; ^~~~~~ udvpanel.c: In function 'UDV_SearchFeatForKey': udvpanel.c:3478:14: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ButtoN b1,b2; ^~ At top level: udvpanel.c:2773:28: warning: 'FeaturesListBoxScan' defined but not used [-Wunused-function] static Boolean LIBCALLBACK FeaturesListBoxScan (SeqFeatPtr sfp, ^~~~~~~~~~~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/udviewer.h:220, from udvpanel.c:197: udvpanel.c: In function 'InitFeaturesListDlg': ../include/vibdefns.h:342:19: warning: 'pop' may be used uninitialized in this function [-Wmaybe-uninitialized] #define PopupItem Nlm_PopupItem ^~~~~~~~~~~~~ udvpanel.c:3194:7: note: 'pop' was declared here PopuP pop; ^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotvibrant.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/dotviewer.h:15, from dotvibrant.c:84: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ dotvibrant.c: In function 'DOT_DisplayHits': dotvibrant.c:564:18: warning: variable 'ycomp' set but not used [-Wunused-but-set-variable] Int4 ycomp, xcomp; ^~~~~ dotvibrant.c: In function 'DOT_VscrlProc': dotvibrant.c:918:16: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] Int2 visLines, vmargin, hmargin; ^~~~~~~~ dotvibrant.c: In function 'DOT_HscrlProc': dotvibrant.c:972:20: warning: variable 'visLines' set but not used [-Wunused-but-set-variable] Int2 dx, visLines, offset, hmargin, vmargin; ^~~~~~~~ dotvibrant.c: In function 'DOT_VCrossHairs': dotvibrant.c:1402:10: warning: unused variable 'cursor_size' [-Wunused-variable] Int4 cursor_size =15; ^~~~~~~~~~~ dotvibrant.c: In function 'DOT_HCrossHairs': dotvibrant.c:1427:9: warning: unused variable 'cursor_size' [-Wunused-variable] Int4 cursor_size = 15; ^~~~~~~~~~~ dotvibrant.c: In function 'DOT_MoveCrossHairs': dotvibrant.c:1453:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] DOTSelDataPtr data; ^~~~ dotvibrant.c:1452:10: warning: unused variable 'cursor_size' [-Wunused-variable] Int4 cursor_size = 15; ^~~~~~~~~~~ dotvibrant.c: In function 'DOT_DrawXAxis': dotvibrant.c:1532:38: warning: unused variable 'title' [-Wunused-variable] Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/ ^~~~~ dotvibrant.c: In function 'DOT_DrawYAxis': dotvibrant.c:1642:38: warning: unused variable 'title' [-Wunused-variable] Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/ ^~~~~ dotvibrant.c:1641:55: warning: variable 'Fh_4' set but not used [-Wunused-but-set-variable] Int4 pos, ylen, x, y, scale_pos, i, j, Fh_2,Fh_4; ^~~~ dotvibrant.c: In function 'DOT_SVDisplayDiags': dotvibrant.c:1770:28: warning: variable 'aln_diag' set but not used [-Wunused-but-set-variable] Int4 diag, aln_diag; ^~~~~~~~ dotvibrant.c:1770:22: warning: variable 'diag' set but not used [-Wunused-but-set-variable] Int4 diag, aln_diag; ^~~~ dotvibrant.c:1766:22: warning: variable 'width' set but not used [-Wunused-but-set-variable] Int4 width, height; ^~~~~ dotvibrant.c:1765:31: warning: variable 'p_HFrom' set but not used [-Wunused-but-set-variable] Int4 p_VFrom, p_HFrom; ^~~~~~~ dotvibrant.c:1765:22: warning: variable 'p_VFrom' set but not used [-Wunused-but-set-variable] Int4 p_VFrom, p_HFrom; ^~~~~~~ dotvibrant.c:1762:28: warning: unused variable 'cutoff' [-Wunused-variable] Int4 stop, cutoff=0, q_start, s_start, length; ^~~~~~ dotvibrant.c:1760:34: warning: variable 'seg3' set but not used [-Wunused-but-set-variable] SegmenT seg1, seg2, seg3, seg4; ^~~~ dotvibrant.c: In function 'DOT_FillNewSeqBufs': dotvibrant.c:2197:19: warning: unused variable 'alp' [-Wunused-variable] DOTAlignInfoPtr alp=NULL; ^~~ dotvibrant.c: In function 'DOT_InitCInfo': dotvibrant.c:2258:14: warning: unused variable 'colBuf' [-Wunused-variable] Char colBuf[12]={""}; ^~~~~~ dotvibrant.c: In function 'DOT_SVDisplaySequence': dotvibrant.c:2379:16: warning: variable 'matrix' set but not used [-Wunused-but-set-variable] Int4Ptr PNTR matrix; ^~~~~~ dotvibrant.c:2367:14: warning: variable 'vis_2' set but not used [-Wunused-but-set-variable] Int4 vis_2, buf_len; ^~~~~ dotvibrant.c:2364:14: warning: unused variable 'prot_threshold' [-Wunused-variable] Int4 prot_threshold=0, bloc_cntr; ^~~~~~~~~~~~~~ dotvibrant.c:2350:24: warning: variable 'mip2' set but not used [-Wunused-but-set-variable] DOTMainDataPtr mip1, mip2; ^~~~ dotvibrant.c: In function 'DOT_SVClickProc': dotvibrant.c:2807:17: warning: unused variable 'handled' [-Wunused-variable] Int2 handled=0; ^~~~~~~ dotvibrant.c: In function 'DOT_ResizeFeatWindow': dotvibrant.c:3016:63: warning: variable 'SubjectHeight' set but not used [-Wunused-but-set-variable] Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw; ^~~~~~~~~~~~~ dotvibrant.c:3016:51: warning: variable 'QueryHeight' set but not used [-Wunused-but-set-variable] Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw; ^~~~~~~~~~~ dotvibrant.c:3016:37: warning: variable 'gap' set but not used [-Wunused-but-set-variable] Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw; ^~~ dotvibrant.c: In function 'DOT_ResizeSequenceWindow': dotvibrant.c:3098:25: warning: variable 'is_visible2' set but not used [-Wunused-but-set-variable] Boolean is_visible1, is_visible2; ^~~~~~~~~~~ dotvibrant.c:3098:12: warning: variable 'is_visible1' set but not used [-Wunused-but-set-variable] Boolean is_visible1, is_visible2; ^~~~~~~~~~~ dotvibrant.c:3095:51: warning: variable 'V1Height' set but not used [-Wunused-but-set-variable] Int2 height,width,gap,vsbWidth,in,hsbHeight,V1Height,V2Height, goHeight; ^~~~~~~~ dotvibrant.c: In function 'DOT_HideFeatDlg': dotvibrant.c:3745:12: warning: variable 'b' set but not used [-Wunused-but-set-variable] ButtoN b; ^ dotvibrant.c: In function 'DOT_SVBuildDiagViewer': dotvibrant.c:4031:18: warning: variable 'mip' set but not used [-Wunused-but-set-variable] DOTMainDataPtr mip; ^~~ dotvibrant.c:4029:28: warning: unused variable 'str2' [-Wunused-variable] Char str1[41]={""}, str2[41]={""}; ^~~~ dotvibrant.c:4029:13: warning: unused variable 'str1' [-Wunused-variable] Char str1[41]={""}, str2[41]={""}; ^~~~ dotvibrant.c:4022:18: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] PrompT pr1, pr2; ^~~ dotvibrant.c:4022:13: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] PrompT pr1, pr2; ^~~ dotvibrant.c: In function 'DOT_UpdateDataRects': dotvibrant.c:4166:19: warning: variable 'dy' set but not used [-Wunused-but-set-variable] Int4 comp, dx, dy, xstart, ystart; ^~ dotvibrant.c:4166:15: warning: variable 'dx' set but not used [-Wunused-but-set-variable] Int4 comp, dx, dy, xstart, ystart; ^~ dotvibrant.c: In function 'DOT_MsgFunc': dotvibrant.c:4215:17: warning: variable 'vdp2' set but not used [-Wunused-but-set-variable] DOTVibDataPtr vdp2 = NULL; ^~~~ dotvibrant.c: In function 'DOT_ReleaseProc': dotvibrant.c:4373:32: warning: unused variable 'yaxis_incr' [-Wunused-variable] Boolean xaxis_incr=TRUE, yaxis_incr=TRUE; ^~~~~~~~~~ dotvibrant.c:4373:15: warning: unused variable 'xaxis_incr' [-Wunused-variable] Boolean xaxis_incr=TRUE, yaxis_incr=TRUE; ^~~~~~~~~~ dotvibrant.c:4371:19: warning: variable 'alp' set but not used [-Wunused-but-set-variable] DOTAlignInfoPtr alp=NULL; ^~~ dotvibrant.c:4370:18: warning: variable 'mip1' set but not used [-Wunused-but-set-variable] DOTMainDataPtr mip1=NULL; ^~~~ dotvibrant.c: In function 'DOT_StartDOTPLOT': dotvibrant.c:4891:23: warning: variable 'vdp' set but not used [-Wunused-but-set-variable] DOTVibDataPtr vdp; ^~~ dotvibrant.c: In function 'DOT_DoZoom': dotvibrant.c:5106:18: warning: variable 'data' set but not used [-Wunused-but-set-variable] DOTSelDataPtr data; ^~~~ dotvibrant.c: In function 'DOT_ZoomProc': dotvibrant.c:5204:23: warning: variable 'temport' set but not used [-Wunused-but-set-variable] WindoW temport, w; ^~~~~~~ dotvibrant.c: In function 'AlnMgr2GetNextLine': dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value] *n++; ^~~~ dotvibrant.c: In function 'DOT_GetAlign': dotvibrant.c:5332:44: warning: variable 'n' set but not used [-Wunused-but-set-variable] Int4 x1, y1, x2, y2, numlines=0, n=0, i=0; ^ dotvibrant.c: In function 'DOT_FillAlignInfoPointer': dotvibrant.c:5565:16: warning: unused variable 'i' [-Wunused-variable] Int4 i=0, n=0; ^ dotvibrant.c: In function 'DOT_Prob_FillAlignInfoPointer': dotvibrant.c:5681:16: warning: unused variable 'i' [-Wunused-variable] Int4 i=0, n=0; ^ dotvibrant.c:5680:16: warning: unused variable 'numsaps' [-Wunused-variable] Int4 numsaps = 0, numlines = 0; ^~~~~~~ dotvibrant.c:5678:37: warning: unused variable 'sap_tmp' [-Wunused-variable] SeqAlignPtr sap=NULL, salp=NULL, sap_tmp=NULL; ^~~~~~~ dotvibrant.c: In function 'DOT_DoBlast': dotvibrant.c:5918:23: warning: unused variable 'eval' [-Wunused-variable] Char eval[11]={""}; ^~~~ dotvibrant.c:5917:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] Boolean is_local; ^~~~~~~~ dotvibrant.c:5915:23: warning: unused variable 'entityID' [-Wunused-variable] Uint2 entityID=0; ^~~~~~~~ dotvibrant.c: In function 'DOT_CreateWindowDetails': dotvibrant.c:6214:27: warning: variable 'pr2' set but not used [-Wunused-but-set-variable] PrompT pr1, pr2; ^~~ dotvibrant.c:6214:22: warning: variable 'pr1' set but not used [-Wunused-but-set-variable] PrompT pr1, pr2; ^~~ dotvibrant.c:6207:21: warning: variable 'g1' set but not used [-Wunused-but-set-variable] GrouP g, g1, g2; ^~ dotvibrant.c: In function 'DOT_ResizeMainWindow': dotvibrant.c:6273:35: warning: variable 'gap' set but not used [-Wunused-but-set-variable] Int2 height, width, in , gap; ^~~ dotvibrant.c: In function 'DOT_FindAlignment': dotvibrant.c:6662:29: warning: unused variable 'rb_fixed' [-Wunused-variable] Boolean lt_fixed=FALSE, rb_fixed=FALSE; ^~~~~~~~ dotvibrant.c:6662:13: warning: unused variable 'lt_fixed' [-Wunused-variable] Boolean lt_fixed=FALSE, rb_fixed=FALSE; ^~~~~~~~ dotvibrant.c:6661:17: warning: variable 'data' set but not used [-Wunused-but-set-variable] DOTSelDataPtr data; ^~~~ dotvibrant.c: In function 'SCP_CompareOrderOrganizeBioseqs': dotvibrant.c:6792:25: warning: variable 'itemID' set but not used [-Wunused-but-set-variable] Uint4 itemID=0; ^~~~~~ dotvibrant.c: In function 'SCP_OrganizeAlnsInSet': dotvibrant.c:6873:21: warning: variable 'indextype' set but not used [-Wunused-but-set-variable] Int4 indextype; ^~~~~~~~~ In file included from ../include/sqnutils.h:51, from ../include/alignmgr2.h:111, from ../include/actutils.h:105, from ../include/dotviewer.h:32, from dotvibrant.c:84: dotvibrant.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/dotviewer.h:32, from dotvibrant.c:84: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ dotvibrant.c:6642:16: warning: 'DOT_DeselectPrim' defined but not used [-Wunused-function] static Boolean DOT_DeselectPrim (SegmenT seg, PrimitivE prim, Uint2 segID,Uint2 primID, Uint2 primCt, VoidPtr userdata) ^~~~~~~~~~~~~~~~ dotvibrant.c:6346:13: warning: 'DOT_NewAnalysis' defined but not used [-Wunused-function] static void DOT_NewAnalysis (ButtoN b) ^~~~~~~~~~~~~~~ dotvibrant.c:5894:16: warning: 'DOT_get_eval' defined but not used [-Wunused-function] static FloatHi DOT_get_eval(Int4 exp) ^~~~~~~~~~~~ dotvibrant.c:5325:16: warning: 'DOT_GetAlign' defined but not used [-Wunused-function] static Boolean DOT_GetAlign (DOTAlignInfoPtr alp) ^~~~~~~~~~~~ dotvibrant.c:5281:16: warning: 'AlnMgr2GetNextLine' defined but not used [-Wunused-function] static Boolean AlnMgr2GetNextLine(SeqAlignPtr sap, AlnMsg2Ptr amp1, AlnMsg2Ptr amp2, Int4Ptr x1, Int4Ptr y1, Int4Ptr x2, Int4Ptr y2, Int4Ptr n) ^~~~~~~~~~~~~~~~~~ dotvibrant.c:4767:13: warning: 'DOT_FeatAnalysisProc' defined but not used [-Wunused-function] static void DOT_FeatAnalysisProc(ButtoN b) ^~~~~~~~~~~~~~~~~~~~ dotvibrant.c:4749:13: warning: 'DOT_GetInfoProc' defined but not used [-Wunused-function] static void DOT_GetInfoProc (IteM i) ^~~~~~~~~~~~~~~ dotvibrant.c:4213:25: warning: 'DOT_MsgFunc' defined but not used [-Wunused-function] static Int2 LIBCALLBACK DOT_MsgFunc (OMMsgStructPtr ommsp) ^~~~~~~~~~~ dotvibrant.c:3688:13: warning: 'DOT_HideAcceptProc' defined but not used [-Wunused-function] static void DOT_HideAcceptProc(ButtoN b) ^~~~~~~~~~~~~~~~~~ dotvibrant.c:3318:13: warning: 'DOT_AddFeatureToSegment' defined but not used [-Wunused-function] static void DOT_AddFeatureToSegment(SeqMgrFeatContextPtr context, ^~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2954:13: warning: 'DOT_SVChangeLabels' defined but not used [-Wunused-function] static void DOT_SVChangeLabels (GrouP g) ^~~~~~~~~~~~~~~~~~ dotvibrant.c:2760:16: warning: 'DOT_SVGetDiag' defined but not used [-Wunused-function] static Boolean DOT_SVGetDiag (Uint2 segID, Uint2 primID, VoidPtr userdata) ^~~~~~~~~~~~~ dotvibrant.c: In function 'DOT_GetNthSeqFromAlign': dotvibrant.c:5087:3: warning: 'spp' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqPortFree(spp); ^~~~~~~~~~~~~~~~ dotvibrant.c: In function 'DOT_SVPopulateSequenceViewer.part.24': dotvibrant.c:2611:19: warning: 'strand2' may be used uninitialized in this function [-Wmaybe-uninitialized] DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2380:23: note: 'strand2' was declared here Uint1 strand1, strand2; ^~~~~~~ dotvibrant.c:2611:19: warning: 'strand1' may be used uninitialized in this function [-Wmaybe-uninitialized] DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2380:14: note: 'strand1' was declared here Uint1 strand1, strand2; ^~~~~~~ dotvibrant.c:2561:45: warning: 'residue_names' may be used uninitialized in this function [-Wmaybe-uninitialized] sBuf[c]=*residue_names[(int)*s]; ^ dotvibrant.c:2378:16: note: 'residue_names' was declared here CharPtr PNTR residue_names; ^~~~~~~~~~~~~ dotvibrant.c:2611:19: warning: 's_pos' may be used uninitialized in this function [-Wmaybe-uninitialized] DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2370:42: note: 's_pos' was declared here Int4 hit_start, hit_stop, q_pos, s_pos; ^~~~~ dotvibrant.c:2611:19: warning: 'q_pos' may be used uninitialized in this function [-Wmaybe-uninitialized] DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dotvibrant.c:2370:35: note: 'q_pos' was declared here Int4 hit_start, hit_stop, q_pos, s_pos; ^~~~~ dotvibrant.c:2504:21: warning: 'hit_stop' may be used uninitialized in this function [-Wmaybe-uninitialized] hit_stop+=hit_stop/10; ~~~~~~~~^~~ dotvibrant.c:2370:25: note: 'hit_stop' was declared here Int4 hit_start, hit_stop, q_pos, s_pos; ^~~~~~~~ dotvibrant.c:2570:26: warning: 'hit_start' may be used uninitialized in this function [-Wmaybe-uninitialized] if (hit_start<=i && i<=(hit_stop+bloc_size)) ^ dotvibrant.c:2370:14: note: 'hit_start' was declared here Int4 hit_start, hit_stop, q_pos, s_pos; ^~~~~~~~~ dotvibrant.c:2503:16: warning: 'buf_len' may be used uninitialized in this function [-Wmaybe-uninitialized] end=s+buf_len-1; ^ dotvibrant.c:2367:21: note: 'buf_len' was declared here Int4 vis_2, buf_len; ^~~~~~~ dotvibrant.c:2545:18: warning: 'is_na' may be used uninitialized in this function [-Wmaybe-uninitialized] if (is_na) ^ dotvibrant.c:2361:27: note: 'is_na' was declared here Boolean ambig=FALSE, is_na; ^~~~~ dotvibrant.c:2503:6: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized] end=s+buf_len-1; ~~~^~~~~~~~~~~~ dotvibrant.c:2357:14: note: 's' was declared here Uint1Ptr s; ^ dotvibrant.c:2626:16: warning: 'q' may be used uninitialized in this function [-Wmaybe-uninitialized] q++; ~^~ dotvibrant.c:2356:14: note: 'q' was declared here Uint1Ptr q; ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil1.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from dlgutil1.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ dlgutil1.c: In function 'IsAuthList': dlgutil1.c:2962:8: warning: variable 'len' set but not used [-Wunused-but-set-variable] Int4 len; ^~~ dlgutil1.c: In function 'TestIntervalEditor': dlgutil1.c:5324:20: warning: variable 'fuzz_to' set but not used [-Wunused-but-set-variable] Int2 fuzz_to; ^~~~~~~ dlgutil1.c:5323:20: warning: variable 'fuzz_from' set but not used [-Wunused-but-set-variable] Int2 fuzz_from; ^~~~~~~~~ dlgutil1.c:5322:41: warning: variable 'fuzz_before' set but not used [-Wunused-but-set-variable] Boolean isInterval, isPoint, fuzz_before, fuzz_after; ^~~~~~~~~~~ dlgutil1.c: In function 'DbtagDialogToDbtagPtr': dlgutil1.c:7254:16: warning: unused variable 'val' [-Wunused-variable] long int val; ^~~ dlgutil1.c:7250:16: warning: unused variable 'ptr' [-Wunused-variable] CharPtr ptr; ^~~ dlgutil1.c:7247:16: warning: unused variable 'num_digits' [-Wunused-variable] Int2 num_digits; ^~~~~~~~~~ dlgutil1.c:7246:16: warning: unused variable 'notallzero' [-Wunused-variable] Boolean notallzero; ^~~~~~~~~~ dlgutil1.c:7243:16: warning: unused variable 'leadingzero' [-Wunused-variable] Boolean leadingzero; ^~~~~~~~~~~ dlgutil1.c:7238:16: warning: unused variable 'alldigits' [-Wunused-variable] Boolean alldigits; ^~~~~~~~~ dlgutil1.c: In function 'CreateStandardEditMenu': dlgutil1.c:9427:8: warning: variable 'i' set but not used [-Wunused-but-set-variable] IteM i; ^ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from dlgutil1.c:55: dlgutil1.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ dlgutil1.c:8603:25: warning: 'GetNthNameValuePair' defined but not used [-Wunused-function] static NameValuePairPtr GetNthNameValuePair (Int4 n, ValNodePtr list) ^~~~~~~~~~~~~~~~~~~ dlgutil1.c:8051:16: warning: 'ParseSpecimenVoucherOk' defined but not used [-Wunused-function] static Boolean ParseSpecimenVoucherOk (CharPtr str) ^~~~~~~~~~~~~~~~~~~~~~ dlgutil1.c:1293:13: warning: 'GbqualsToVisStringDialog' defined but not used [-Wunused-function] static void GbqualsToVisStringDialog (SeqFeatPtr sfp, DialoG d, CharPtr qual) ^~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil2.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from dlgutil2.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ dlgutil2.c: In function 'CreateImportFields': dlgutil2.c:1401:19: warning: variable 'is_gap' set but not used [-Wunused-but-set-variable] Boolean is_gap = FALSE; ^~~~~~ dlgutil2.c: In function 'UpdateTableDisplayDialogScrollBars': dlgutil2.c:3552:11: warning: variable 'y' set but not used [-Wunused-but-set-variable] Int4 x, y; ^ dlgutil2.c:3552:8: warning: variable 'x' set but not used [-Wunused-but-set-variable] Int4 x, y; ^ dlgutil2.c: In function 'GetTableDisplayCell': dlgutil2.c:3951:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable] Int4 start_row, start_col; ^~~~~~~~~ dlgutil2.c: In function 'NewCreateInferenceDialog': dlgutil2.c:7633:19: warning: variable 'fnt' set but not used [-Wunused-but-set-variable] FonT fnt; ^~~ dlgutil2.c: In function 'ClickableListOnKey': dlgutil2.c:10479:20: warning: variable 'clp' set but not used [-Wunused-but-set-variable] ClickableListPtr clp; ^~~ dlgutil2.c: In function 'GetSelectedClickableListText': dlgutil2.c:11151:36: warning: variable 'char_offset' set but not used [-Wunused-but-set-variable] Int2 item, row, col, char_offset; ^~~~~~~~~~~ dlgutil2.c: In function 'AutomatchFeatures': dlgutil2.c:14210:36: warning: variable 's3' set but not used [-Wunused-but-set-variable] SeqIntPtr s1, s2, s3; ^~ At top level: dlgutil2.c:12342:16: warning: 'ParseMultiListQualOk' defined but not used [-Wunused-function] static Boolean ParseMultiListQualOk (CharPtr val) ^~~~~~~~~~~~~~~~~~~~ dlgutil2.c:10336:13: warning: 'ClickClickableListItem' defined but not used [-Wunused-function] static void ClickClickableListItem (DoC d, PoinT pt) ^~~~~~~~~~~~~~~~~~~~~~ dlgutil2.c:10316:13: warning: 'DrawClickableListItem' defined but not used [-Wunused-function] static void DrawClickableListItem (DoC d, RectPtr r, Int2 item, Int2 firstLine) ^~~~~~~~~~~~~~~~~~~~~ dlgutil2.c:8854:13: warning: 'GetCategoryNumFromName' defined but not used [-Wunused-function] static Int4 GetCategoryNumFromName (CharPtr category) ^~~~~~~~~~~~~~~~~~~~~~ dlgutil2.c:1676:16: warning: 'GetNameForFeature' defined but not used [-Wunused-function] static CharPtr GetNameForFeature (SeqFeatPtr sfp) ^~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2trmlst.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from e2trmlst.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ e2trmlst.c: In function 'ReadAFew': e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value] for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) { ^ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2docsum.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from e2docsum.c:42: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ e2docsum.c: In function 'FormatCdsSeq': e2docsum.c:1523:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable] SeqFeatPtr gene = NULL; ^~~~ e2docsum.c: In function 'FetchSequence': e2docsum.c:1591:16: warning: variable 'currDbName' set but not used [-Wunused-but-set-variable] CharPtr currDbName; ^~~~~~~~~~ e2docsum.c:1580:16: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] Uint1 group_segs = 0; ^~~~~~~~~~ e2docsum.c: In function 'SaveDocsumProject': e2docsum.c:3606:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable] SummFormPtr sfp; ^~~ e2docsum.c: In function 'RetrieveGeneration': e2docsum.c:4135:19: warning: variable 'e2ip' set but not used [-Wunused-but-set-variable] Entrez2InfoPtr e2ip; ^~~~ e2docsum.c: In function 'SetupMenus': e2docsum.c:4849:16: warning: variable 'c' set but not used [-Wunused-but-set-variable] ChoicE c; ^ In file included from ../include/sqnutils.h:51, from ../include/dlogutil.h:50, from ../include/bspview.h:48, from e2docsum.c:53: e2docsum.c: At top level: ../include/objentgene.h:177:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr )); ^~~~~~~~~~~~~~~~~ ../include/objentgene.h:178:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function] static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objentgene.h:179:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strucapi.h:52, from e2docsum.c:62: ../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function] static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr )); ^~~~~~~~~~~~~ ../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function] static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~ ../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~ ../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function] static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function] static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ e2docsum.c: In function 'LaunchStructureViewer': e2docsum.c:2981:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ e2docsum.c: In function 'LaunchSequin': e2docsum.c:2838:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ At top level: e2docsum.c:2883:13: warning: 'GetBiostrucMaxModels' defined but not used [-Wunused-function] static Int4 GetBiostrucMaxModels (void) ^~~~~~~~~~~~~~~~~~~~ e2docsum.c:2850:13: warning: 'GetBiostrucComplexity' defined but not used [-Wunused-function] static Int4 GetBiostrucComplexity (void) ^~~~~~~~~~~~~~~~~~~~~ e2docsum.c:2154:20: warning: 'cddDocProcs' defined but not used [-Wunused-variable] static DocPrntProc cddDocProcs [] = { Query_FetchDocSum, Query_FetchFields, FetchUid, NULL }; ^~~~~~~~~~~ e2docsum.c: In function 'LaunchStructureViewer': e2docsum.c:2980:24: warning: '%s' directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=] sprintf (cmmd, "Cn3D %s &", path); ^~ ~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from e2docsum.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ e2docsum.c: In function 'LaunchSequin.isra.4': e2docsum.c:2837:31: warning: '%s' directive writing up to 4095 bytes into a region of size 4084 [-Wformat-overflow=] sprintf (cmmd, "sequin -x < %s &", path); ^~ ~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from e2docsum.c:42: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2graphic.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ asn2graphic.c: In function 'ParseFilterItem': asn2graphic.c:1191:21: warning: variable 'j' set but not used [-Wunused-but-set-variable] Int2 i, j; ^ asn2graphic.c: In function 'GeneProductsLayoutInternal': asn2graphic.c:3730:36: warning: variable 'featureStart' set but not used [-Wunused-but-set-variable] Int4 newLeft, featureStart, rowMaxRight; ^~~~~~~~~~~~ asn2graphic.c: In function 'ScaleSntDrawProc': asn2graphic.c:4402:28: warning: variable 'r' set but not used [-Wunused-but-set-variable] RecT r; ^ asn2graphic.c: In function 'GphSentProc': asn2graphic.c:4997:16: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] Int4 scaleY; ^~~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from asn2graphic.c:46: asn2graphic.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ asn2graphic.c: In function 'ParseConfigFile': asn2graphic.c:1198:27: warning: '%s' directive writing up to 127 bytes into a region of size 120 [-Wformat-overflow=] sprintf (sect, "filters.%s", filterItemName); ^~ asn2graphic.c:1500:30: FIP = ParseFilterItem (buf, defaultRowPadding, defaultGroupPadding, defaultLayout, VCP); ~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 136 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:946:21: warning: '.master' directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] sprintf (sect, "%s.master", appearanceNameInFile); ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 135 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1006:29: warning: '.bioseq' directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] sprintf (outputBuffer, "%s.bioseq", appearanceNameInFile); ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 135 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1008:29: warning: '.imp' directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=] sprintf (outputBuffer, "%s.imp", appearanceNameInFile); ^~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 132 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1011:31: warning: '.import' directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] sprintf (outputBuffer, "%s.import", appearanceNameInFile); ^~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 8 and 135 bytes into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asn2graphic.c:1021:34: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i)); ^ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2graphic.h:45, from ../include/asn2graphicp.h:45, from asn2graphic.c:41: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 129) into a destination of size 128 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF medview.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/medview.h:48, from medview.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ medview.c: In function 'PrintMedlineViewForm': medview.c:588:7: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bspview.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from bspview.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from bspview.c:61: ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfview.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from gbfview.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gbfview.c: In function 'RelModeFailText': gbfview.c:1004:22: warning: variable 'hasPubs' set but not used [-Wunused-but-set-variable] Boolean hasPubs; ^~~~~~~ gbfview.c: In function 'PopulateFlatFile': gbfview.c:1292:22: warning: variable 'doColors' set but not used [-Wunused-but-set-variable] Boolean doColors; ^~~~~~~~ gbfview.c: In function 'PopulateFasta': gbfview.c:1717:33: warning: left-hand operand of comma expression has no effect [-Wunused-value] if (ISA_na (bsp->mol)) {TRUE, ^ gbfview.c:1649:20: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable] Uint1 group_segs; ^~~~~~~~~~ gbfview.c: In function 'PopulateAsnOrXML': gbfview.c:1972:16: warning: variable 'lookupFar' set but not used [-Wunused-but-set-variable] Boolean lookupFar = FALSE; ^~~~~~~~~ gbfview.c:1971:16: warning: variable 'lockFar' set but not used [-Wunused-but-set-variable] Boolean lockFar = FALSE; ^~~~~~~ gbfview.c: In function 'PrintFlatFileFastaOrAsn': gbfview.c:2494:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ gbfview.c: In function 'ReleaseIcon': gbfview.c:667:21: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system (cmmd); ^~~~~~~~~~~~~ At top level: gbfview.c:1234:13: warning: 'LookForFarProds' defined but not used [-Wunused-function] static void LookForFarProds ( ^~~~~~~~~~~~~~~ gbfview.c:1215:13: warning: 'LookForFarBsp' defined but not used [-Wunused-function] static void LookForFarBsp ( ^~~~~~~~~~~~~ gbfview.c:944:13: warning: 'LookForPubs' defined but not used [-Wunused-function] static void LookForPubs (BioseqPtr bsp, Pointer userdata) ^~~~~~~~~~~ gbfview.c:289:16: warning: 'ColorIcon' defined but not used [-Wunused-function] static Boolean ColorIcon ( ^~~~~~~~~ gbfview.c: In function 'ReleaseIcon': gbfview.c:666:42: warning: '%s' directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=] sprintf (cmmd, "open %s", path); ^~ ~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from gbfview.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 4101 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphview.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from gphview.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gphview.c: In function 'ReleaseAlignment': gphview.c:1306:18: warning: variable 'slp' set but not used [-Wunused-but-set-variable] SeqLocPtr slp; ^~~ gphview.c: In function 'DrawAlignOnAllSequences': gphview.c:1391:10: warning: variable 'vn' set but not used [-Wunused-but-set-variable] ValNode vn; ^~ gphview.c: In function 'ReleaseDesktop': gphview.c:1836:18: warning: variable 'seg' set but not used [-Wunused-but-set-variable] SegmenT seg; ^~~ gphview.c: In function 'AutoScrollGeneName': gphview.c:2100:21: warning: variable 'num' set but not used [-Wunused-but-set-variable] Int2 num; ^~~ gphview.c: In function 'DisplayGeneChoiceWindow': gphview.c:2426:22: warning: variable 'p' set but not used [-Wunused-but-set-variable] PrompT p; ^ gphview.c: In function 'PrintGraphical': gphview.c:3268:14: warning: unused variable 'ans' [-Wunused-variable] MsgAnswer ans; ^~~ gphview.c: In function 'PopulateAsn2GphGraphic': gphview.c:3868:16: warning: variable 'min' set but not used [-Wunused-but-set-variable] Int4 min; ^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphdraw.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from gphdraw.c:59: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gphdraw.c: In function 'GraphSentProc': gphdraw.c:195:18: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable] Int4 scaleY; ^~~~~~ gphdraw.c: In function 'DrawGraphToPanel': gphdraw.c:453:27: warning: variable 'xp' set but not used [-Wunused-but-set-variable] Int4Ptr xpoints, xp; ^~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gxydraw.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from gxydraw.c:50: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gxydraw.c: In function 'DotXYPlot': gxydraw.c:259:19: warning: 'xaxiscount' may be used uninitialized in this function [-Wmaybe-uninitialized] gsp->xaxiscount = xaxiscount; ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ gxydraw.c:182:19: note: 'xaxiscount' was declared here Int4 xaxiscount, yaxiscount; ^~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gtrdraw.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from gtrdraw.c:53: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpanel.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ seqpanel.c: In function 'FillFeatureInfo': seqpanel.c:427:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] Int4 j, start, stop; ^~~~ seqpanel.c:427:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] Int4 j, start, stop; ^~~~~ seqpanel.c: In function 'DrawFeatureCodonLines': seqpanel.c:1897:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] Char tmp[2]; ^~~ seqpanel.c: In function 'DrawFeature': seqpanel.c:2127:21: warning: variable 'prot_len' set but not used [-Wunused-but-set-variable] Int4 prot_len; ^~~~~~~~ seqpanel.c: In function 'GetSeqChapterFeatureInfo': seqpanel.c:3136:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable] Int4 j, start, stop; ^~~~ seqpanel.c:3136:11: warning: variable 'start' set but not used [-Wunused-but-set-variable] Int4 j, start, stop; ^~~~~ seqpanel.c: In function 'onSeqEdVScrollBarSeqPanel': seqpanel.c:3406:17: warning: variable 'totallines' set but not used [-Wunused-but-set-variable] Int4 totallines; ^~~~~~~~~~ seqpanel.c: In function 'PrintFeature': seqpanel.c:3812:28: warning: variable 'fRight' set but not used [-Wunused-but-set-variable] Int4 fLeft, fRight, swap; ^~~~~~ seqpanel.c:3812:21: warning: variable 'fLeft' set but not used [-Wunused-but-set-variable] Int4 fLeft, fRight, swap; ^~~~~ seqpanel.c: In function 'PrintTranslatedFrame': seqpanel.c:3966:17: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] Char tmp[2]; ^~~ seqpanel.c: In function 'ExportSequenceText': seqpanel.c:4372:44: warning: pointer targets in passing argument 1 of 'complement_string' differ in signedness [-Wpointer-sign] complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET); ^ In file included from ../include/alignmgr2.h:112, from seqpanel.c:39: ../include/salutil.h:78:20: note: expected 'Nlm_CharPtr' {aka 'char *'} but argument is of type 'Nlm_Uint1Ptr' {aka 'unsigned char *'} NLM_EXTERN CharPtr complement_string (CharPtr str); ^~~~~~~~~~~~~~~~~ seqpanel.c:4236:17: warning: variable 'curr_para_strings' set but not used [-Wunused-but-set-variable] ValNodePtr curr_para_strings = NULL; ^~~~~~~~~~~~~~~~~ seqpanel.c:4229:17: warning: variable 'buf' set but not used [-Wunused-but-set-variable] Uint1Ptr buf; ^~~ seqpanel.c: In function 'SeqEdOnClick': seqpanel.c:4946:21: warning: variable 'direction' set but not used [-Wunused-but-set-variable] Int4 direction; ^~~~~~~~~ seqpanel.c: In function 'SeqAlnOnDrag': seqpanel.c:5685:34: warning: variable 'is_ctrl' set but not used [-Wunused-but-set-variable] Boolean is_double_click, is_ctrl; ^~~~~~~ seqpanel.c:5685:17: warning: variable 'is_double_click' set but not used [-Wunused-but-set-variable] Boolean is_double_click, is_ctrl; ^~~~~~~~~~~~~~~ seqpanel.c: In function 'ResizeSeqEdView': seqpanel.c:5760:8: warning: variable 'sequence_pos' set but not used [-Wunused-but-set-variable] Int4 sequence_pos = 0; ^~~~~~~~~~~~ seqpanel.c:5755:8: warning: variable 'height' set but not used [-Wunused-but-set-variable] Int4 height, width; ^~~~~~ seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx': seqpanel.c:8665:22: warning: passing argument 1 of 'fputs' from incompatible pointer type [-Wincompatible-pointer-types] fputs (fp, printed_line); ^~ In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/s390x-linux-gnu/include/stdio.h:632:42: note: expected 'const char * restrict' but argument is of type 'FILE *' {aka 'struct _IO_FILE *'} extern int fputs (const char *__restrict __s, FILE *__restrict __stream); ~~~~~~~~~~~~~~~~~~~~~~~^~~ seqpanel.c:8665:26: warning: passing argument 2 of 'fputs' from incompatible pointer type [-Wincompatible-pointer-types] fputs (fp, printed_line); ^~~~~~~~~~~~ In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/s390x-linux-gnu/include/stdio.h:632:64: note: expected 'FILE * restrict' {aka 'struct _IO_FILE * restrict'} but argument is of type 'Nlm_CharPtr' {aka 'char *'} extern int fputs (const char *__restrict __s, FILE *__restrict __stream); ~~~~~~~~~~~~~~~~~^~~~~~~~ seqpanel.c: In function 'WriteAlignmentContiguousToFile': seqpanel.c:8761:20: warning: passing argument 1 of 'fputs' from incompatible pointer type [-Wincompatible-pointer-types] fputs (fp, printed_line); ^~ In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/s390x-linux-gnu/include/stdio.h:632:42: note: expected 'const char * restrict' but argument is of type 'FILE *' {aka 'struct _IO_FILE *'} extern int fputs (const char *__restrict __s, FILE *__restrict __stream); ~~~~~~~~~~~~~~~~~~~~~~~^~~ seqpanel.c:8761:24: warning: passing argument 2 of 'fputs' from incompatible pointer type [-Wincompatible-pointer-types] fputs (fp, printed_line); ^~~~~~~~~~~~ In file included from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: /usr/s390x-linux-gnu/include/stdio.h:632:64: note: expected 'FILE * restrict' {aka 'struct _IO_FILE * restrict'} but argument is of type 'Nlm_CharPtr' {aka 'char *'} extern int fputs (const char *__restrict __s, FILE *__restrict __stream); ~~~~~~~~~~~~~~~~~^~~~~~~~ seqpanel.c: In function 'ReverseSequenceStrandsInAlignment': seqpanel.c:9008:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable] SeqEntryPtr sep; ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from seqpanel.c:39: seqpanel.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ seqpanel.c:1171:16: warning: 'GetAlignmentColumnPercentIDsForAlignmentSection' defined but not used [-Wunused-function] static double *GetAlignmentColumnPercentIDsForAlignmentSection (BioseqViewPtr bvp, Int4 line, Int4 aln_idx) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: seqpanel.c: In function 'SeqEdFindPatternDialog': ../include/vibdefns.h:535:22: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] #define AlignObjects Nlm_AlignObjects ^~~~~~~~~~~~~~~~ seqpanel.c:7632:25: note: 'g1' was declared here GrouP h, g1, g2; ^~ In file included from ../include/ncbi.h:62, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/bspview.h:48, from seqpanel.c:33: seqpanel.c: In function 'PrintFeature': ../include/ncbistr.h:331:19: warning: 'str_prot' may be used uninitialized in this function [-Wmaybe-uninitialized] #define StringLen Nlm_StringLen ^~~~~~~~~~~~~ seqpanel.c:3810:21: note: 'str_prot' was declared here CharPtr str_prot; ^~~~~~~~ seqpanel.c: In function 'SeqEdExportProc': seqpanel.c:4329:13: warning: 'seq_pos' may be used uninitialized in this function [-Wmaybe-uninitialized] SeqEdPrintTextLineToFile ((CharPtr)file_line, from, to, seq_pos, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqpanel.c:4233:17: note: 'seq_pos' was declared here Int4 seq_pos; ^~~~~~~ seqpanel.c: In function 'onDrawSeqPanel': seqpanel.c:1301:24: warning: 'alnbuf' may be used uninitialized in this function [-Wmaybe-uninitialized] MemCpy(buf, alnbuf + from, len); ~~~~~~~^~~~~~ seqpanel.c:2466:33: note: 'alnbuf' was declared here Uint1Ptr buf, seqbuf, alnbuf; ^~~~~~ seqpanel.c:1252:3: warning: 'seqbuf' may be used uninitialized in this function [-Wmaybe-uninitialized] AlignmentIntervalToString (tmp_salp, row, start, stop, bvp->TargetRow, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bvp->viewWholeEntity, seqbuf, alnbuf, &alnbuf_len, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bvp->showAlnSubstitutions); ~~~~~~~~~~~~~~~~~~~~~~~~~~ seqpanel.c:2466:25: note: 'seqbuf' was declared here Uint1Ptr buf, seqbuf, alnbuf; ^~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingengraph.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/ingengraph.h:52, from ingengraph.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ingengraph.c: In function 'Ing_BigEncodeIdxFeat': ingengraph.c:262:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] return *((Uint8Ptr) index_g); ~^~~~~~~~~~~~~~~~~~~ ingengraph.c: In function 'Ing_AddOneAlignToOverviewPage': ingengraph.c:355:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ ingengraph.c:357:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' prim = AddRectangle(seg, start, (row)*(-20), stop, (row)*(-20)+j, NO_ARROW, FALSE,0); ^~~~ ingengraph.c:347:13: warning: unused variable 'bsp' [-Wunused-variable] BioseqPtr bsp=NULL; ^~~ ingengraph.c: In function 'Ing_AddAlignsToOverviewPage': ingengraph.c:372:18: warning: unused variable 'buf' [-Wunused-variable] Char buf[41]={""}; ^~~ ingengraph.c:367:18: warning: variable 'NewLine' set but not used [-Wunused-but-set-variable] Boolean NewLine=FALSE; ^~~~~~~ ingengraph.c: In function 'Ing_DrawOverviewPage': ingengraph.c:492:14: warning: variable 'offset' set but not used [-Wunused-but-set-variable] Int4 offset; ^~~~~~ In file included from ../include/vibrant.h:130, from ../include/ingengraph.h:54, from ingengraph.c:45: ../include/vibdefns.h:468:17: warning: unused variable 'Nlm_Visible' [-Wunused-variable] #define Visible Nlm_Visible ^~~~~~~~~~~ ingengraph.c:488:14: note: in expansion of macro 'Visible' Boolean Visible=FALSE; ^~~~~~~ ingengraph.c: In function 'Ing_PopOverviewPage': ingengraph.c:715:16: warning: variable 'margin' set but not used [-Wunused-but-set-variable] Int4 margin, len; ^~~~~~ ingengraph.c:714:16: warning: unused variable 'buf' [-Wunused-variable] Char buf[50]={""}; ^~~ ingengraph.c:708:16: warning: unused variable 'sanp' [-Wunused-variable] SeqAnnotPtr sanp=NULL; ^~~~ ingengraph.c: In function 'Ing_AddAlignsToDetailedPage': ingengraph.c:1097:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((start - offset - (label_len - feat_len)/2)<0) ^~ ingengraph.c:1099:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (bOver_the_edge) ^~ ingengraph.c: In function 'Ing_PopDetailedPage': ingengraph.c:1437:16: warning: variable 'CurrentSeg' set but not used [-Wunused-but-set-variable] SegmenT CurrentSeg=NULL; ^~~~~~~~~~ ingengraph.c: In function 'Ing_ExploreSegments': ingengraph.c:1829:22: warning: unused variable 'isDraft' [-Wunused-variable] Boolean isDraft = FALSE; ^~~~~~~ ingengraph.c:1827:22: warning: unused variable 'vnp' [-Wunused-variable] ValNodePtr vnp = NULL; ^~~ ingengraph.c:1826:22: warning: unused variable 'gbp' [-Wunused-variable] GBBlockPtr gbp = NULL; ^~~ ingengraph.c:1824:33: warning: variable 'black' set but not used [-Wunused-but-set-variable] Uint1 orange[3], black[3]; ^~~~~ ingengraph.c:1823:33: warning: variable 'lime' set but not used [-Wunused-but-set-variable] Uint1 indigo[3], lime[3]; ^~~~ ingengraph.c:1823:22: warning: variable 'indigo' set but not used [-Wunused-but-set-variable] Uint1 indigo[3], lime[3]; ^~~~~~ ingengraph.c: In function 'Ing_AddGCRect': ingengraph.c:1933:17: warning: variable 'comp2' set but not used [-Wunused-but-set-variable] FloatHi comp2, comp_prev; ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/ingengraph.h:63, from ingengraph.c:45: ingengraph.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ ingengraph.c:71:13: warning: 'Ing_GetNamesZoomedVal' declared 'static' but never defined [-Wunused-function] static void Ing_GetNamesZoomedVal(VieweR vNames,Int4Ptr from, Int4Ptr to, ^~~~~~~~~~~~~~~~~~~~~ ingengraph.c:602:28: warning: 'Ing_CollectFeatures1' defined but not used [-Wunused-function] static Boolean LIBCALLBACK Ing_CollectFeatures1(SeqFeatPtr sfp, SeqMgrFeatContextPtr sfc) ^~~~~~~~~~~~~~~~~~~~ ingengraph.c:583:24: warning: 'Ing_SortByChoice' defined but not used [-Wunused-function] static int LIBCALLBACK Ing_SortByChoice (VoidPtr ptr1, VoidPtr ptr2) ^~~~~~~~~~~~~~~~ ingengraph.c: In function 'Ing_PopDetailedPage': ingengraph.c:1092:27: warning: '%s' directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=] sprintf(label,"gi|%s", buf); ^~ ~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objmgr.h:51, from ../include/seqmgr.h:48, from ../include/ingengraph.h:52, from ingengraph.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 44 bytes into a destination of size 41 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenext.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ingenext.c: In function 'Ing_KeepTheBestAlignments': ingenext.c:167:20: warning: variable 'amaip' set but not used [-Wunused-but-set-variable] AMAlignIndex2Ptr amaip = NULL; ^~~~~ ingenext.c: In function 'Ing_HandleQBlastResults': ingenext.c:272:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ ^~~~~~~ ingenext.c: In function 'Ing_HandleResults': ingenext.c:535:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ ^~~~~~~ ingenext.c: In function 'Ing_AccepttRNAargsProc': ingenext.c:739:18: warning: unused variable 'paramlist' [-Wunused-variable] ValNodePtr paramlist = NULL; ^~~~~~~~~ ingenext.c: In function 'Ing_tRNAscanProc': ingenext.c:915:22: warning: unused variable 'moveMe' [-Wunused-variable] ValNodePtr moveMe = NULL; ^~~~~~ ingenext.c:906:22: warning: unused variable 'first' [-Wunused-variable] TexT first = NULL; ^~~~~ ingenext.c:902:22: warning: variable 'b' set but not used [-Wunused-but-set-variable] ButtoN b; ^ ingenext.c:896:17: warning: unused variable 'args' [-Wunused-variable] CharPtr args = NULL; ^~~~ ingenext.c: In function 'Ing_ReadtRNAConfigFile': ingenext.c:1125:15: warning: variable 'demomode' set but not used [-Wunused-but-set-variable] Boolean demomode = FALSE; ^~~~~~~~ ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1312:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable] Boolean is_local, first_bsp=TRUE; ^~~~~~~~ ingenext.c: In function 'Ing_CreateDotMatrixForm': ingenext.c:1834:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) ^~~~~~~ ingenext.c: In function 'Ing_RunSpidey': ingenext.c:1994:20: warning: unused variable 'sanp' [-Wunused-variable] SeqAnnotPtr sanp = NULL; ^~~~ ingenext.c:1993:20: warning: unused variable 'spidp_next' [-Wunused-variable] SPI_mRNAPtr spidp_next = NULL; ^~~~~~~~~~ ingenext.c:1992:20: warning: unused variable 'spidp_head' [-Wunused-variable] SPI_mRNAPtr spidp_head = NULL; ^~~~~~~~~~ ingenext.c: In function 'Ing_ReadmRNAs_ext': ingenext.c:2025:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) ^~~~~~~ ingenext.c: In function 'Ing_DeleteInsertInGenomic': ingenext.c:2522:16: warning: unused variable 'newsegs' [-Wunused-variable] Int2 newsegs = 0, offset = 0; ^~~~~~~ ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2777:11: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!All) ^~ ingenext.c:2781:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' SeqLocReplace(msip, mmis, mmis, mstrand, gsip, gmis, gmis, gstrand); ^~~~~~~~~~~~~ ingenext.c:2615:21: warning: unused variable 'str' [-Wunused-variable] Char str[200] = {""}; ^~~ ingenext.c:2612:22: warning: unused variable 'amaip' [-Wunused-variable] AMAlignIndex2Ptr amaip = NULL; ^~~~~ ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3025:15: warning: unused variable 'sip' [-Wunused-variable] SeqIdPtr sip = NULL; ^~~ ingenext.c: In function 'Ing_PrintSpideyReport': ingenext.c:3471:27: warning: variable 'gmis' set but not used [-Wunused-but-set-variable] Int4 mmis, gmis, miscount = 0; ^~~~ ingenext.c: In function 'Ing_PrintBlastReport': ingenext.c:3853:18: warning: unused variable 'more' [-Wunused-variable] Boolean more = FALSE; ^~~~ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ../include/ingenext.h:53, from ingenext.c:46: ../include/vibdefns.h:652:16: warning: variable 'Nlm_DkGray' set but not used [-Wunused-but-set-variable] #define DkGray Nlm_DkGray ^~~~~~~~~~ ingenext.c:3850:18: note: in expansion of macro 'DkGray' Uint1 DkGray[3]; ^~~~~~ ingenext.c: In function 'Ing_PopulateReport': ingenext.c:4328:20: warning: unused variable 'sip' [-Wunused-variable] SeqIdPtr sip=NULL; ^~~ ingenext.c:4324:20: warning: unused variable 'temp' [-Wunused-variable] CharPtr temp = NULL; ^~~~ ingenext.c: In function 'Ing_ResizeReportWindow': ingenext.c:4484:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] BaR hsb; ^~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/ingenwin.h:60, from ../include/ingenext.h:53, from ingenext.c:46: ingenext.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:135, from ../include/ingenwin.h:62, from ../include/ingenext.h:53, from ingenext.c:46: ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr )); ^~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr )); ^~~~~~~~~~~~~~~~~ ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ ingenext.c:130:13: warning: 'querytimercount' defined but not used [-Wunused-variable] static Int4 querytimercount = 0; ^~~~~~~~~~~~~~~ ingenext.c:129:13: warning: 'querytimerlimit' defined but not used [-Wunused-variable] static Int4 querytimerlimit = 100; ^~~~~~~~~~~~~~~ ingenext.c:59:28: warning: 'Ing_BlastCallback' defined but not used [-Wunused-function] static Boolean LIBCALLBACK Ing_BlastCallback (BlastResponse *brp, ^~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from ../include/ingenwin.h:62, from ../include/ingenext.h:53, from ingenext.c:46: ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = avnx; ^~~ ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "blstspc.h23"; ^~~~~~~~~~~ ingenext.c: In function 'Ing_DoBlast2Seqs': ingenext.c:1457:17: warning: 'e_head' may be used uninitialized in this function [-Wmaybe-uninitialized] e_tmp->next=e_head; ~~~~~~~~~~~^~~~~~~ ingenext.c: In function 'Ing_RunSpidey': ingenext.c:2003:45: warning: '%s' directive writing up to 30 bytes into a region of size 14 [-Wformat-overflow=] sprintf(buf, "Spidey returned NULL for %s", str); ^~ ~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 27 and 57 bytes into a destination of size 40 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c: In function 'Ing_PrintBlastReport.isra.9': ingenext.c:3893:19: warning: ', ' directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=] sprintf(tmp, "%s, ", defline); ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 257 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c:3911:19: warning: ', ' directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=] sprintf(tmp, "%s, ", defline); ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 257 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c: In function 'Ing_MismatchProc': ingenext.c:3170:32: warning: 'gstart' may be used uninitialized in this function [-Wmaybe-uninitialized] gstart = start + (stop - gstart); ~~~~~~^~~~~~~~~ ingenext.c:3206:45: warning: 'mstart' may be used uninitialized in this function [-Wmaybe-uninitialized] else if (mstart == R1 || mstart == R2 || mstart == R3){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation': ingenext.c:2617:33: warning: 'nmismatches' may be used uninitialized in this function [-Wmaybe-uninitialized] Int4 gmis, mmis, nmismatches, nkeep = 0; ^~~~~~~~~~~ ingenext.c: In function 'Ing_PrintSpideyReport.isra.14': ingenext.c:3534:19: warning: ', ' directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=] sprintf(tmp, "%s, ", defline); ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 257 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c:3552:19: warning: ', ' directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=] sprintf(tmp, "%s, ", defline); ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ../include/ingenext.h:53, from ingenext.c:46: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 257 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenwin.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ingenwin.c: In function 'Ing_PopulateDetailedPage': ingenwin.c:134:22: warning: unused variable 'bSelected' [-Wunused-variable] Boolean bSelected = FALSE; ^~~~~~~~~ ingenwin.c: In function 'Ing_DoRange': ingenwin.c:394:22: warning: variable 'bsp' set but not used [-Wunused-but-set-variable] BioseqPtr bsp; ^~~ ingenwin.c: In function 'Ing_PopulateCpG': ingenwin.c:576:19: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] Int2 cxChar, nchars; ^~~~~~ ingenwin.c: In function 'Ing_ResizeCpGWindow': ingenwin.c:642:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] BaR hsb; ^~~ ingenwin.c: In function 'Ing_PopulateMotif': ingenwin.c:718:26: warning: variable 'nchars' set but not used [-Wunused-but-set-variable] Int2 cxChar, nchars; ^~~~~~ ingenwin.c:717:24: warning: variable 'swidth' set but not used [-Wunused-but-set-variable] Int4 slen, swidth; ^~~~~~ ingenwin.c:717:18: warning: variable 'slen' set but not used [-Wunused-but-set-variable] Int4 slen, swidth; ^~~~ ingenwin.c: In function 'Ing_ResizeMotifWindow': ingenwin.c:785:12: warning: unused variable 'name' [-Wunused-variable] CharPtr name = NULL; ^~~~ ingenwin.c:783:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable] BaR hsb; ^~~ ingenwin.c: In function 'Ing_ShowComplexity': ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){ ^ ingenwin.c: In function 'Ing_CreateNewFeature': ingenwin.c:1301:22: warning: unused variable 'rnatype' [-Wunused-variable] Uint1 rnatype=0; ^~~~~~~ ingenwin.c: In function 'Ing_GetAlignmentIntervals': ingenwin.c:1418:20: warning: unused variable 'master' [-Wunused-variable] SeqIdPtr master = NULL; ^~~~~~ ingenwin.c: In function 'Ing_OldGetAlignmentIntervals': ingenwin.c:1494:20: warning: unused variable 'master' [-Wunused-variable] SeqIdPtr master = NULL; ^~~~~~ ingenwin.c: In function 'Ing_OldMakeLocListFromSAP': ingenwin.c:1613:26: warning: unused variable 'slp2' [-Wunused-variable] SeqLocPtr slp1 = NULL, slp2 = NULL; ^~~~ ingenwin.c:1613:13: warning: unused variable 'slp1' [-Wunused-variable] SeqLocPtr slp1 = NULL, slp2 = NULL; ^~~~ ingenwin.c: In function 'Ing_OM_MsgFunc': ingenwin.c:2380:15: warning: the address of 'sfc' will always evaluate as 'true' [-Waddress] if (&sfc) ^ ingenwin.c:2284:22: warning: unused variable 'segID' [-Wunused-variable] Uint2 segID=0; ^~~~~ ingenwin.c:2280:22: warning: unused variable 'sep' [-Wunused-variable] SeqEntryPtr sep=NULL; ^~~ ingenwin.c:2271:31: warning: unused variable 'number' [-Wunused-variable] Int4 score=0, number=0; ^~~~~~ ingenwin.c:2271:22: warning: unused variable 'score' [-Wunused-variable] Int4 score=0, number=0; ^~~~~ ingenwin.c:2270:34: warning: unused variable 'n' [-Wunused-variable] Int4 s1=0, s2=0, n=1; ^ ingenwin.c:2270:28: warning: unused variable 's2' [-Wunused-variable] Int4 s1=0, s2=0, n=1; ^~ ingenwin.c:2270:22: warning: unused variable 's1' [-Wunused-variable] Int4 s1=0, s2=0, n=1; ^~ ingenwin.c: In function 'Ing_MoveCursor': ingenwin.c:2631:9: warning: variable 'grayClr2' set but not used [-Wunused-but-set-variable] Uint1 grayClr2[3]; ^~~~~~~~ ingenwin.c: In function 'Ing_FeatViewerClickProc': ingenwin.c:2814:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){ ^~~~~~ ingenwin.c:2804:14: warning: unused variable 'slp' [-Wunused-variable] SeqLocPtr slp=NULL; ^~~ ingenwin.c: In function 'Ing_SequenceClickProc': ingenwin.c:2908:22: warning: variable 'ssp' set but not used [-Wunused-but-set-variable] SelStructPtr ssp=NULL; ^~~ ingenwin.c: In function 'Ing_ReadInBlastAsn': ingenwin.c:3077:19: warning: unused variable 'Report' [-Wunused-variable] IngReportPtr Report=NULL; ^~~~~~ ingenwin.c:3075:19: warning: unused variable 'sip' [-Wunused-variable] SeqIdPtr sip=NULL; ^~~ ingenwin.c:3074:19: warning: unused variable 'salp' [-Wunused-variable] SeqAlignPtr salp=NULL; ^~~~ ingenwin.c:3073:19: warning: unused variable 'n_sap' [-Wunused-variable] SeqAlignPtr n_sap=NULL; ^~~~~ ingenwin.c: In function 'Ing_ParseSeqIdFile': ingenwin.c:3142:20: warning: unused variable 'bsp' [-Wunused-variable] BioseqPtr bsp=NULL; ^~~ ingenwin.c: In function 'Ing_ReadInFeatureTable': ingenwin.c:3194:20: warning: variable 'sanp' set but not used [-Wunused-but-set-variable] SeqAnnotPtr sanp; ^~~~ ingenwin.c: In function 'Ing_AssembleGenscanInfo': ingenwin.c:3258:17: warning: unused variable 'slp' [-Wunused-variable] SeqLocPtr slp=NULL; ^~~ ingenwin.c: In function 'Ing_ReadInGenscan': ingenwin.c:3300:33: warning: unused variable 'str' [-Wunused-variable] CharPtr letter=NULL, str=NULL; ^~~ ingenwin.c:3300:20: warning: unused variable 'letter' [-Wunused-variable] CharPtr letter=NULL, str=NULL; ^~~~~~ ingenwin.c:3298:33: warning: unused variable 'first_pass' [-Wunused-variable] Boolean found=FALSE, first_pass=FALSE; ^~~~~~~~~~ ingenwin.c: In function 'Ing_AssembleTabDelimited': ingenwin.c:3519:17: warning: variable 'score' set but not used [-Wunused-but-set-variable] Int4 score; ^~~~~ ingenwin.c:3516:17: warning: unused variable 'tmp' [-Wunused-variable] CharPtr tmp=NULL; ^~~ ingenwin.c: In function 'Ing_ReadInTabDelimited': ingenwin.c:3659:40: warning: variable 'label_str' set but not used [-Wunused-but-set-variable] CharPtr tmp=NULL, str=NULL, label_str=NULL; ^~~~~~~~~ ingenwin.c:3659:20: warning: unused variable 'tmp' [-Wunused-variable] CharPtr tmp=NULL, str=NULL, label_str=NULL; ^~~ ingenwin.c:3653:20: warning: unused variable 'lip_tmp' [-Wunused-variable] IngInfoPtr lip_tmp=NULL; ^~~~~~~ ingenwin.c:3650:20: warning: unused variable 'letter' [-Wunused-variable] CharPtr letter=NULL; ^~~~~~ ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3984:16: warning: unused variable 'Report' [-Wunused-variable] IngReportPtr Report=NULL; ^~~~~~ ingenwin.c: In function 'Ing_FileOpenMain': ingenwin.c:4078:21: warning: unused variable 'sep_orig' [-Wunused-variable] SeqEntryPtr sep_orig=NULL, sep=NULL; ^~~~~~~~ ingenwin.c: In function 'Ing_ResizeMainWindow': ingenwin.c:4187:25: warning: variable 'InfoHeight' set but not used [-Wunused-but-set-variable] Int2 RulerHeight, InfoHeight; ^~~~~~~~~~ ingenwin.c: In function 'Ing_OpenFromFileORNetwork': ingenwin.c:4491:25: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ButtoN b,b2; ^~ ingenwin.c: In function 'Ing_EditFeature': ingenwin.c:4640:22: warning: variable 'igvp' set but not used [-Wunused-but-set-variable] IngGenomeViewerPtr igvp=NULL; ^~~~ ingenwin.c: In function 'Ing_MarkSeqAnnot': ingenwin.c:4713:16: warning: unused variable 'bNoParent' [-Wunused-variable] Boolean bNoParent = FALSE; ^~~~~~~~~ ingenwin.c: In function 'Ing_CreateMismatchedDialog': ingenwin.c:4924:31: warning: 'main' is usually a function [-Wmain] GrouP g, g1, g2, main; ^~~~ ingenwin.c: In function 'Ing_PropagateClickProc': ingenwin.c:5064:22: warning: unused variable 'primID' [-Wunused-variable] Uint2 primID=0; ^~~~~~ ingenwin.c:5063:22: warning: unused variable 'itemtype' [-Wunused-variable] Uint2 itemtype=0; ^~~~~~~~ ingenwin.c:5062:22: warning: unused variable 'itemID' [-Wunused-variable] Uint4 itemID=0; ^~~~~~ ingenwin.c:5061:22: warning: unused variable 'entityID' [-Wunused-variable] Uint2 entityID=0; ^~~~~~~~ ingenwin.c:5060:22: warning: unused variable 'ssp' [-Wunused-variable] SelStructPtr ssp=NULL; ^~~ ingenwin.c:5059:22: warning: unused variable 'igvp' [-Wunused-variable] IngGenomeViewerPtr igvp=NULL; ^~~~ ingenwin.c: In function 'Ing_PrintCompProteins': ingenwin.c:5146:32: warning: unused variable 'str2' [-Wunused-variable] Char str1[200] = {""}, str2[10] = {""}; ^~~~ ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5282:14: warning: variable 'ARROW' set but not used [-Wunused-but-set-variable] Uint1 ARROW=NO_ARROW; ^~~~~ ingenwin.c:5279:14: warning: unused variable 'stringwidth' [-Wunused-variable] Int4 stringwidth = 0; ^~~~~~~~~~~ ingenwin.c:5277:14: warning: unused variable 'left' [-Wunused-variable] Int4 left = 10; ^~~~ ingenwin.c:5276:14: warning: variable 'prim' set but not used [-Wunused-but-set-variable] PrimitivE prim; ^~~~ ingenwin.c: In function 'Ing_DoPropagate': ingenwin.c:5596:14: warning: unused variable 'strErr' [-Wunused-variable] Char strErr[50]={""}; ^~~~~~ ingenwin.c: In function 'Ing_GetFromNetwork': ingenwin.c:7518:11: warning: unused variable 'szAppName' [-Wunused-variable] Char szAppName [10]={"Ingenue"}; ^~~~~~~~~ ingenwin.c: In function 'Ing_SetupMainWindow': ingenwin.c:7761:16: warning: unused variable 'szAppName' [-Wunused-variable] Char szAppName [10]={"Ingenue"}; ^~~~~~~~~ ingenwin.c:7760:48: warning: unused variable 'str2' [-Wunused-variable] Char title[100]={""}, str1[20]={""}, str2[20]={""}; ^~~~ ingenwin.c:7760:33: warning: unused variable 'str1' [-Wunused-variable] Char title[100]={""}, str1[20]={""}, str2[20]={""}; ^~~~ ingenwin.c:7760:16: warning: unused variable 'title' [-Wunused-variable] Char title[100]={""}, str1[20]={""}, str2[20]={""}; ^~~~~ In file included from ../include/samutil.h:234, from ../include/alignmgr2.h:114, from ../include/actutils.h:105, from ../include/ingenwin.h:60, from ingenwin.c:45: ingenwin.c: At top level: ../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr )); ^~~~~~~~~~~ ../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function] static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~ ../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:72, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function] static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:73, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr )); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function] static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr )); ^~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function] static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/strimprt.h:74, from ../include/mmdbapi1.h:234, from ../include/accentr.h:143, from ../include/ingenwin.h:61, from ingenwin.c:45: ../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function] static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr )); ^~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function] static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr )); ^~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function] static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:135, from ../include/ingenwin.h:62, from ingenwin.c:45: ../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function] static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr )); ^~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function] static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function] static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr )); ^~~~~~~~~~~~~~~~~ ../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function] static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~ ../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function] static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr)); ^~~~~~~~~~~~~~~~~~~~~ ingenwin.c:7552:13: warning: 'Ing_ItemtoNetwork' defined but not used [-Wunused-function] static void Ing_ItemtoNetwork(IteM i){ ^~~~~~~~~~~~~~~~~ ingenwin.c:6717:13: warning: 'Ing_BspListProc' defined but not used [-Wunused-function] static void Ing_BspListProc(IteM i) ^~~~~~~~~~~~~~~ ingenwin.c:5535:16: warning: 'Ing_KeywordAlreadyInList' defined but not used [-Wunused-function] static Boolean Ing_KeywordAlreadyInList (ValNodePtr head, CharPtr kwd) ^~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:1869:16: warning: 'Ing_DeSelectPrim' defined but not used [-Wunused-function] static Boolean Ing_DeSelectPrim (SegmenT seg, PrimitivE prim, Uint2 segID, Uint2 primID, Uint2 primCt, VoidPtr userdata) ^~~~~~~~~~~~~~~~ ingenwin.c:1610:18: warning: 'Ing_OldMakeLocListFromSAP' defined but not used [-Wunused-function] static SeqLocPtr Ing_OldMakeLocListFromSAP(SeqAlignPtr sap) ^~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:1487:23: warning: 'Ing_OldGetAlignmentIntervals' defined but not used [-Wunused-function] static IngIvalInfoPtr Ing_OldGetAlignmentIntervals (SeqAlignPtr sap, Int4 from_row, Int4 to_row, Int4 from, Int4 to, Uint1 strand) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../include/netblap3.h:134, from ../include/ingenwin.h:62, from ingenwin.c:45: ../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable] static AsnModulePtr amp = ampx; ^~~ ../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable] static AsnTypePtr at = atx; ^~ ../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable] static AsnValxNodePtr avn = avnx; ^~~ ../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable] static char * asnfilename = "blstspc.h23"; ^~~~~~~~~~~ ingenwin.c: In function 'Ing_ReplaceMismatchedProc': ingenwin.c:4902:3: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized] Ing_ReplaceAllMismatchedInLocation(igvp, rmp->sap, start, stop, GetStatus(rmp->all), GetStatus(rmp->gaps), GetStatus(rmp->inserts)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:4902:3: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized] ingenwin.c: In function 'Ing_SearchOK': ingenwin.c:7355:22: warning: '%s' directive writing up to 254 bytes into a region of size 50 [-Wformat-overflow=] sprintf(strErr, "%s was not found in record", str); ^~ ~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 25 and 279 bytes into a destination of size 50 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c: In function 'Ing_AnnotateAlignmentForm': ingenwin.c:6113:30: warning: '%s' directive writing up to 99 bytes into a region of size 94 [-Wformat-overflow=] sprintf(buf_mrna, "from: %s", str_mrna); ^~ ~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 106 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:6117:27: warning: '%s' directive writing up to 99 bytes into a region of size 96 [-Wformat-overflow=] sprintf(buf_gen, "to: %s", str_gen); ^~ ~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 104 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c: In function 'Ing_PropagateReport': ingenwin.c:5353:17: warning: '%s' directive writing up to 299 bytes into a region of size 255 [-Wformat-overflow=] sprintf(str, "%s", pfp->name); ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 1 and 300 bytes into a destination of size 255 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:5229:37: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized] for (i = last_pos; i <= exit; i += nchars_row){ ~~^~~~~~~~~~~~~ ingenwin.c:5137:17: note: 'j' was declared here Int4 i, j, k, row; ^ ingenwin.c: In function 'Ing_DoPropagate': ingenwin.c:5625:26: warning: ' already exists. Do you stil...' directive writing 51 bytes into a region of size between 1 and 300 [-Wformat-overflow=] sprintf (str_buf, "%s already exists. Do you still want to propagate it?", pfp->name); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 52 and 351 bytes into a destination of size 300 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c: In function 'Ing_FileOpenSpecial': ingenwin.c:3290:13: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized] slp_list=Ing_MakeSlpList(NULL, n/2, ivals, strand, igvp->bsp->id); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:3255:17: note: 'strand' was declared here Uint1 strand; ^~~~~~ ingenwin.c: In function 'Ing_FindMotif': ingenwin.c:1145:17: warning: '%s' directive writing up to 99 bytes into a region of size 50 [-Wformat-overflow=] sprintf(str, "%s", motif); ^~ ~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/asn2ff.h:113, from ../include/ingenwin.h:58, from ingenwin.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 1 and 100 bytes into a destination of size 50 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c: In function 'Ing_KozakProc': ingenwin.c:1048:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ans == ANS_NO) ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized] #define Select Nlm_Select ^~~~~~~~~~ ingenwin.c:1006:22: note: 'ReportW' was declared here WindoW ReportW; ^~~~~~~ ingenwin.c: In function 'Ing_SignalPeptideProc': ingenwin.c:1099:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ans == ANS_NO) ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized] #define Select Nlm_Select ^~~~~~~~~~ ingenwin.c:1057:22: note: 'ReportW' was declared here WindoW ReportW; ^~~~~~~ ingenwin.c: In function 'Ing_RepeatsProc': ingenwin.c:997:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ans == ANS_NO) ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized] #define Select Nlm_Select ^~~~~~~~~~ ingenwin.c:955:22: note: 'ReportW' was declared here WindoW ReportW; ^~~~~~~ ingenwin.c: In function 'Ing_PolyAProc': ingenwin.c:946:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ans == ANS_NO) ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized] #define Select Nlm_Select ^~~~~~~~~~ ingenwin.c:904:22: note: 'ReportW' was declared here WindoW ReportW; ^~~~~~~ ingenwin.c: In function 'Ing_CpGProc': ingenwin.c:895:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ans == ANS_NO) ^ In file included from ../include/vibrant.h:130, from ../include/dlogutil.h:48, from ../include/import.h:48, from ../include/ingenwin.h:64, from ingenwin.c:45: ../include/vibdefns.h:476:16: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized] #define Select Nlm_Select ^~~~~~~~~~ ingenwin.c:857:22: note: 'ReportW' was declared here WindoW ReportW; ^~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macrodlg.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/asn.h:54, from ../include/objseq.h:48, from macrodlg.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ macrodlg.c: In function 'ExistingTextDialog': macrodlg.c:1959:22: warning: variable 'ppt' set but not used [-Wunused-but-set-variable] PrompT ppt; ^~~ macrodlg.c: In function 'EndDistanceToDialog': macrodlg.c:3076:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", v->data.intvalue); ~^ ~~~~~~~~~~~~~~~~ %ld macrodlg.c:3082:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", v->data.intvalue); ~^ ~~~~~~~~~~~~~~~~ %ld macrodlg.c:3088:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", v->data.intvalue); ~^ ~~~~~~~~~~~~~~~~ %ld macrodlg.c: In function 'SourceQualChoiceDialog': macrodlg.c:3757:48: warning: variable 'b4' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3 = NULL, b4 = NULL; ^~ macrodlg.c:3757:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3 = NULL, b4 = NULL; ^~ macrodlg.c:3757:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3 = NULL, b4 = NULL; ^~ macrodlg.c:3757:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3 = NULL, b4 = NULL; ^~ macrodlg.c: In function 'SourceConstraintDialog': macrodlg.c:3995:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3; ^~ macrodlg.c:3995:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3; ^~ macrodlg.c:3995:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3; ^~ macrodlg.c: In function 'CDSGeneProtQualConstraintDialog': macrodlg.c:4309:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3; ^~ macrodlg.c:4309:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3; ^~ macrodlg.c:4309:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable] ButtoN b1, b2, b3; ^~ macrodlg.c: In function 'QuantityConstraintToDialog': macrodlg.c:7368:21: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", vnp->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~ %ld macrodlg.c:7373:21: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", vnp->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~ %ld macrodlg.c:7378:21: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", vnp->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~ %ld macrodlg.c: In function 'TestApplyActionDialog': macrodlg.c:12965:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] Int2 field_type = 0; ^~~~~~~~~~ macrodlg.c: In function 'TestEditActionDialog': macrodlg.c:13170:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] Int2 field_type = 0; ^~~~~~~~~~ macrodlg.c: In function 'TestRemoveOutsideActionDialog': macrodlg.c:13328:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable] Int2 field_type = 0; ^~~~~~~~~~ macrodlg.c: In function 'ApplyFeatureActionToDialog': macrodlg.c:15186:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (num, "%d^", action->location->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %ld macrodlg.c:15188:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (num, "%d", action->location->data.intvalue + 1); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %ld macrodlg.c: In function 'AddMacroActions': macrodlg.c:20523:25: warning: variable 'rval' set but not used [-Wunused-but-set-variable] Boolean rval = FALSE; ^~~~ macrodlg.c: In function 'PointerToSampleDialog': macrodlg.c:20659:19: warning: variable 'max_char_per_line' set but not used [-Wunused-but-set-variable] Int4 max_char_per_line; ^~~~~~~~~~~~~~~~~ macrodlg.c: In function 'SampleDialogCopy': macrodlg.c:20779:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable] Int2 start_col = 0, end_col = 0, first_col, last_col; ^~~~~~~~ macrodlg.c:20779:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable] Int2 start_col = 0, end_col = 0, first_col, last_col; ^~~~~~~~~ macrodlg.c: In function 'SingleMacroAcceptButton': macrodlg.c:22071:33: warning: variable 'num_features' set but not used [-Wunused-but-set-variable] Int4 num_fields, num_features; ^~~~~~~~~~~~ macrodlg.c:22071:21: warning: variable 'num_fields' set but not used [-Wunused-but-set-variable] Int4 num_fields, num_features; ^~~~~~~~~~ macrodlg.c: In function 'LaunchMacroTemplateEditor': macrodlg.c:23785:23: warning: variable 'bfp' set but not used [-Wunused-but-set-variable] BaseFormPtr bfp; ^~~ macrodlg.c: In function 'SearchFuncToDialog': macrodlg.c:25755:23: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", func->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~~ %ld macrodlg.c:25776:23: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Nlm_Int8' {aka 'long int'} [-Wformat=] sprintf (buf, "%d", func->data.intvalue); ~^ ~~~~~~~~~~~~~~~~~~~ %ld At top level: macrodlg.c:20095:13: warning: 'ChangeMacroActionPopup' defined but not used [-Wunused-function] static void ChangeMacroActionPopup (LisT t) ^~~~~~~~~~~~~~~~~~~~~~ macrodlg.c:20038:13: warning: 'GetPopupChoiceForActionChoice' defined but not used [-Wunused-function] static Int2 GetPopupChoiceForActionChoice (Uint1 action_choice) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macrodlg.c:19715:13: warning: 'GetCategoryForActionChoice' defined but not used [-Wunused-function] static Int2 GetCategoryForActionChoice (Uint1 action_choice) ^~~~~~~~~~~~~~~~~~~~~~~~~~ macrodlg.c:19698:14: warning: 'GetActionChoiceForCategoryPopupChoice' defined but not used [-Wunused-function] static Uint1 GetActionChoiceForCategoryPopupChoice (Int2 category, Int2 popup_choice) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ macrodlg.c: In function 'ActionToSingleMacroActionForm': macrodlg.c:22216:25: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] Int2 val, i; ^~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF biosrc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/biosrc.h:48, from biosrc.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ biosrc.c: In function 'CreateSimpleBioSourceDialog': biosrc.c:2455:18: warning: variable 'indexerVersion' set but not used [-Wunused-but-set-variable] Boolean indexerVersion; ^~~~~~~~~~~~~~ biosrc.c: In function 'CreateBioSourceDialog': biosrc.c:3615:18: warning: variable 'y' set but not used [-Wunused-but-set-variable] PrompT y; ^ At top level: biosrc.c:3291:26: warning: 'EnumListFromQualNameAssoc' defined but not used [-Wunused-function] static EnumFieldAssocPtr EnumListFromQualNameAssoc (Nlm_QualNameAssocPtr qp) ^~~~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:3100:16: warning: 'SubsourceDialogToSubSourcePtr' defined but not used [-Wunused-function] static Pointer SubsourceDialogToSubSourcePtr (DialoG d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:2677:13: warning: 'SubSourcePtrToSubsourceDialog' defined but not used [-Wunused-function] static void SubSourcePtrToSubsourceDialog (DialoG d, Pointer data) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:2617:16: warning: 'OrgmodDialogToOrgModPtr' defined but not used [-Wunused-function] static Pointer OrgmodDialogToOrgModPtr (DialoG d) ^~~~~~~~~~~~~~~~~~~~~~~ biosrc.c:2568:13: warning: 'OrgModPtrToOrgmodDialog' defined but not used [-Wunused-function] static void OrgModPtrToOrgmodDialog (DialoG d, Pointer data) ^~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdrgn.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/cdrgn.h:89, from cdrgn.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cdrgn.c: In function 'SetBestProteinFeature': cdrgn.c:1003:21: warning: unused variable 'prp' [-Wunused-variable] ProtRefPtr prp; ^~~ cdrgn.c: In function 'CdRegionPtrToForm': cdrgn.c:1050:19: warning: unused variable 'vnp' [-Wunused-variable] ValNodePtr vnp; ^~~ cdrgn.c: In function 'ProductToSeqLocPtr': cdrgn.c:1293:19: warning: variable 'rfp' set but not used [-Wunused-but-set-variable] RnaFormPtr rfp = NULL; ^~~ cdrgn.c: In function 'CreateCodeBreakAlist': cdrgn.c:1926:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] Uint1 first; ^~~~~ cdrgn.c: In function 'CodeBreakPtrToCodeBreakDialog': cdrgn.c:1977:19: warning: variable 'aa' set but not used [-Wunused-but-set-variable] Uint1 aa; ^~ cdrgn.c: In function 'PopulateAAPopup': cdrgn.c:7041:20: warning: variable 'first' set but not used [-Wunused-but-set-variable] Uint1 first; ^~~~~ cdrgn.c: In function 'RnaRefPtrToForm': cdrgn.c:7557:17: warning: unused variable 'is_iMet' [-Wunused-variable] Boolean is_iMet = FALSE; ^~~~~~~ cdrgn.c:7556:17: warning: unused variable 'is_fMet' [-Wunused-variable] Boolean is_fMet = FALSE; ^~~~~~~ At top level: cdrgn.c:6851:13: warning: 'ConvertRnaRefNameToProductQual' defined but not used [-Wunused-function] static void ConvertRnaRefNameToProductQual (SeqFeatPtr sfp) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdrgn.c:6789:13: warning: 'RemoveQualByName' defined but not used [-Wunused-function] static void RemoveQualByName (SeqFeatPtr sfp, CharPtr qual_name) ^~~~~~~~~~~~~~~~ cdrgn.c:6770:18: warning: 'FindOrAddQual' defined but not used [-Wunused-function] static GBQualPtr FindOrAddQual (SeqFeatPtr sfp, CharPtr qual_name) ^~~~~~~~~~~~~ cdrgn.c:6323:15: warning: 'CreateMrnaUserObjectDialog' defined but not used [-Wunused-function] static DialoG CreateMrnaUserObjectDialog (GrouP h, CharPtr label, SeqEntryPtr sep, BaseFormPtr bfp) ^~~~~~~~~~~~~~~~~~~~~~~~~~ cdrgn.c:6246:14: warning: 'check_rna_type' defined but not used [-Wunused-function] static Uint1 check_rna_type (Uint1 type) ^~~~~~~~~~~~~~ cdrgn.c:3183:13: warning: 'SetComment' defined but not used [-Wunused-function] static void SetComment (CharPtr new_comment, WindoW w) ^~~~~~~~~~ cdrgn.c:2149:13: warning: 'AccessionToGi' defined but not used [-Wunused-function] static Int4 AccessionToGi (CharPtr string) ^~~~~~~~~~~~~ cdrgn.c:961:13: warning: 'FormToProtRef' defined but not used [-Wunused-function] static void FormToProtRef(CdRgnFormPtr cfp, ProtRefPtr prp) ^~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF import.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/import.h:48, from import.c:45: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ import.c:3776:22: warning: 'kDoNotEditTitle' initialized and declared 'extern' extern const CharPtr kDoNotEditTitle = "You are manually editing a title. If you continue, the title will not be automatically updated if the taxonomy information changes. Are you sure you want to do this? It is a very bad idea."; ^~~~~~~~~~~~~~~ import.c: In function 'ExpandSecondaries': import.c:3394:30: warning: '%*ld' directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=] sprintf (numbers, "%*ld", digits, (long) idx); ^~~~ import.c:3394:29: note: directive argument in the range [-2147483648, 2147483647] sprintf (numbers, "%*ld", digits, (long) idx); ^~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:873, from ../include/ncbilcl.h:154, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/import.h:48, from import.c:45: /usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 32769 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pubdesc.c In file included from /usr/s390x-linux-gnu/include/sys/types.h:25, from ../include/ncbilcl.h:150, from ../include/ncbi.h:57, from ../include/vibtypes.h:94, from ../include/vibrant.h:124, from ../include/dlogutil.h:48, from ../include/pubdesc.h:48, from pubdesc.c:44: /usr/s390x-linux-gnu/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ pubdesc.c: In function 'MakeReplaceAuthorsForm': pubdesc.c:4303:24: warning: variable 'pepp' set but not used [-Wunused-but-set-variable] PubdescEditProcsPtr pepp; ^~~~ pubdesc.c: In function 'DisplayDocSum': pubdesc.c:4865:9: warning: variable 'lineheight' set but not used [-Wunused-but-set-variable] Int2 lineheight; ^~~~~~~~~~ At top level: pubdesc.c:5377:13: warning: 'Quit' defined but not used [-Wunused-function] static void Quit (ButtoN b) ^~~~ pubdesc.c:5113:14: warning: 'AddAll' defined but not used [-Wunused-function] static void AddAll(Entrez2RequestPtr e2rp, CharPtr term, Boolean is_1st) ^~~~~~ pubdesc.c: In function 'SendQuery': pubdesc.c:5096:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the