sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | paml 4.10.10+dfsg-1 (armhf) Thu, 12 Nov 2026 00:21:27 +0000 | +==============================================================================+ Package: paml Version: 4.10.10+dfsg-1 Source Version: 4.10.10+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild.Y6GV11b3bz... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Thu, 12 Nov 2026 00:21:30 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [12.2 MB] Get:3 http://localhost:3142/debian unstable/main armhf Packages [10.3 MB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages [10.9 MB] Fetched 33.5 MB in 3s (12.9 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: libperl5.42 perl-modules-5.42 The following NEW packages will be installed: libperl5.44 perl-modules-5.44 The following packages will be upgraded: linux-libc-dev perl perl-base 3 upgraded, 2 newly installed, 2 to remove and 0 not upgraded. Need to get 11.8 MB of archives. After this operation, 1320 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 perl-modules-5.44 all 5.44.0-3 [3261 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libperl5.44 amd64 5.44.0-3 [4354 kB] Get:3 http://localhost:3142/debian unstable/main amd64 perl amd64 5.44.0-3 [266 kB] Get:4 http://localhost:3142/debian unstable/main amd64 perl-base amd64 5.44.0-3 [1921 kB] Get:5 http://localhost:3142/debian unstable/main amd64 linux-libc-dev all 7.3.4-1 [2030 kB] Fetched 11.8 MB in 0s (188 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12045 files and directories currently installed.) Preparing to unpack .../perl_5.44.0-3_amd64.deb ... Unpacking perl (5.44.0-3) over (5.42.3-1) ... Selecting previously unselected package perl-modules-5.44. Preparing to unpack .../perl-modules-5.44_5.44.0-3_all.deb ... Unpacking perl-modules-5.44 (5.44.0-3) ... Selecting previously unselected package libperl5.44:amd64. Preparing to unpack .../libperl5.44_5.44.0-3_amd64.deb ... Unpacking libperl5.44:amd64 (5.44.0-3) ... Preparing to unpack .../perl-base_5.44.0-3_amd64.deb ... Unpacking perl-base (5.44.0-3) over (5.42.3-1) ... Setting up perl-base (5.44.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14228 files and directories currently installed.) Removing libperl5.42:amd64 (5.42.3-1) ... Removing perl-modules-5.42 (5.42.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12078 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_7.3.4-1_all.deb ... Unpacking linux-libc-dev (7.3.4-1) over (7.3.3-1) ... Setting up linux-libc-dev (7.3.4-1) ... Setting up perl-modules-5.44 (5.44.0-3) ... Setting up libperl5.44:amd64 (5.44.0-3) ... Setting up perl (5.44.0-3) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Fetch source files Thu, 12 Nov 2026 00:21:36 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'paml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/paml.git Please use: git clone https://salsa.debian.org/med-team/paml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1417 kB of source archives. Get:1 http://localhost:3142/debian unstable/main paml 4.10.10+dfsg-1 (dsc) [2135 B] Get:2 http://localhost:3142/debian unstable/main paml 4.10.10+dfsg-1 (tar) [1408 kB] Get:3 http://localhost:3142/debian unstable/main paml 4.10.10+dfsg-1 (diff) [6736 B] Fetched 1417 kB in 0s (110 MB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 12 Nov 2026 00:21:37 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-armhf:amd64, apt-utils:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 14), libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-armhf:amd64, apt-utils:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-U1gnTC/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ Sources [715 B] Get:5 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ Packages [758 B] Fetched 2082 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-16-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-16-arm-linux-gnueabihf gcc-16-arm-linux-gnueabihf-base gcc-16-base:armhf gcc-16-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc-gconv-modules-extra:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:armhf libgcc-16-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libmagic-mgc libmagic1t64 libpipeline1 libstdc++-16-dev:armhf libstdc++-16-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-armhf-cross m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf manpages-dev:armhf libstdc++-16-doc:armhf libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests libidn2-0:armhf libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-16-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-16-arm-linux-gnueabihf gcc-16-arm-linux-gnueabihf-base gcc-16-base:armhf gcc-16-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc-gconv-modules-extra:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:armhf libgcc-16-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libmagic-mgc libmagic1t64 libpipeline1 libstdc++-16-dev:armhf libstdc++-16-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-armhf-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 85.3 MB of archives. After this operation, 343 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.25.0-2 [1200 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.19-3 [892 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.47.50.20261021-1 [1627 kB] Get:18 http://localhost:3142/debian unstable/main amd64 gcc-16-arm-linux-gnueabihf-base amd64 16.2.0-3cross1 [38.9 kB] Get:19 http://localhost:3142/debian unstable/main amd64 cpp-16-arm-linux-gnueabihf amd64 16.2.0-3cross1 [12.0 MB] Get:20 http://localhost:3142/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:16.2.0-1 [4536 B] Get:21 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libc6-armhf-cross all 2.43-3cross8 [1305 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armhf-cross all 16.2.0-3cross1 [45.0 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libgomp1-armhf-cross all 16.2.0-3cross1 [119 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libatomic1-armhf-cross all 16.2.0-3cross1 [7248 B] Get:26 http://localhost:3142/debian unstable/main amd64 libasan8-armhf-cross all 16.2.0-3cross1 [2688 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libstdc++6-armhf-cross all 16.2.0-3cross1 [638 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libubsan1-armhf-cross all 16.2.0-3cross1 [1089 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-armhf-cross all 16.2.0-3cross1 [781 kB] Get:30 http://localhost:3142/debian unstable/main amd64 gcc-16-arm-linux-gnueabihf amd64 16.2.0-3cross1 [23.1 MB] Get:31 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:16.2.0-1 [1452 B] Get:32 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armhf-cross all 7.3.4-1 [12.0 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libc6-dev-armhf-cross all 2.43-3cross8 [1396 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-armhf-cross all 16.2.0-3cross1 [2625 kB] Get:35 http://localhost:3142/debian unstable/main amd64 g++-16-arm-linux-gnueabihf amd64 16.2.0-3cross1 [13.2 MB] Get:36 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:16.2.0-1 [1204 B] Get:37 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armhf all 12.12 [3548 B] Get:38 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:40 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:43 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:44 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:45 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1+b1 [684 kB] Get:48 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:49 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:50 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:51 http://localhost:3142/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:52 http://localhost:3142/debian unstable/main armhf gcc-16-base armhf 16.2.0-4 [39.3 kB] Get:53 http://localhost:3142/debian unstable/main armhf libgcc-s1 armhf 16.2.0-4 [44.9 kB] Get:54 http://localhost:3142/debian unstable/main armhf libc-gconv-modules-extra armhf 2.43-7 [1139 kB] Get:55 http://localhost:3142/debian unstable/main armhf libc6 armhf 2.43-7 [1539 kB] Get:56 http://localhost:3142/debian unstable/main armhf libasan8 armhf 16.2.0-4 [2698 kB] Get:57 http://localhost:3142/debian unstable/main armhf libatomic1 armhf 16.2.0-4 [7132 B] Get:58 http://localhost:3142/debian unstable/main armhf libc6-dev armhf 2.43-7 [1402 kB] Get:59 http://localhost:3142/debian unstable/main armhf libgomp1 armhf 16.2.0-4 [119 kB] Get:60 http://localhost:3142/debian unstable/main armhf libstdc++6 armhf 16.2.0-4 [662 kB] Get:61 http://localhost:3142/debian unstable/main armhf libubsan1 armhf 16.2.0-4 [1090 kB] Get:62 http://localhost:3142/debian unstable/main armhf libgcc-16-dev armhf 16.2.0-4 [791 kB] Get:63 http://localhost:3142/debian unstable/main armhf libstdc++-16-dev armhf 16.2.0-4 [2661 kB] Preconfiguring packages ... Fetched 85.3 MB in 0s (205 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12078 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-5_amd64.deb ... Unpacking gettext-base (1.0-5) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.25.0-2_amd64.deb ... Unpacking groff-base (1.25.0-2) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.42.4-1_amd64.deb ... Unpacking bsdextrautils (2.42.4-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.73-2_all.deb ... Unpacking autoconf (2.73-2) ... Selecting previously unselected package autotools-dev. 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Preparing to unpack .../17-cpp-16-arm-linux-gnueabihf_16.2.0-3cross1_amd64.deb ... Unpacking cpp-16-arm-linux-gnueabihf (16.2.0-3cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabihf. Preparing to unpack .../18-cpp-arm-linux-gnueabihf_4%3a16.2.0-1_amd64.deb ... Unpacking cpp-arm-linux-gnueabihf (4:16.2.0-1) ... Selecting previously unselected package gcc-16-cross-base. Preparing to unpack .../19-gcc-16-cross-base_16.2.0-3cross1_all.deb ... Unpacking gcc-16-cross-base (16.2.0-3cross1) ... Selecting previously unselected package libc6-armhf-cross. Preparing to unpack .../20-libc6-armhf-cross_2.43-3cross8_all.deb ... Unpacking libc6-armhf-cross (2.43-3cross8) ... Selecting previously unselected package libgcc-s1-armhf-cross. Preparing to unpack .../21-libgcc-s1-armhf-cross_16.2.0-3cross1_all.deb ... Unpacking libgcc-s1-armhf-cross (16.2.0-3cross1) ... Selecting previously unselected package libgomp1-armhf-cross. Preparing to unpack .../22-libgomp1-armhf-cross_16.2.0-3cross1_all.deb ... Unpacking libgomp1-armhf-cross (16.2.0-3cross1) ... Selecting previously unselected package libatomic1-armhf-cross. Preparing to unpack .../23-libatomic1-armhf-cross_16.2.0-3cross1_all.deb ... Unpacking libatomic1-armhf-cross (16.2.0-3cross1) ... Selecting previously unselected package libasan8-armhf-cross. Preparing to unpack .../24-libasan8-armhf-cross_16.2.0-3cross1_all.deb ... Unpacking libasan8-armhf-cross (16.2.0-3cross1) ... Selecting previously unselected package libstdc++6-armhf-cross. Preparing to unpack .../25-libstdc++6-armhf-cross_16.2.0-3cross1_all.deb ... Unpacking libstdc++6-armhf-cross (16.2.0-3cross1) ... Selecting previously unselected package libubsan1-armhf-cross. Preparing to unpack .../26-libubsan1-armhf-cross_16.2.0-3cross1_all.deb ... Unpacking libubsan1-armhf-cross (16.2.0-3cross1) ... Selecting previously unselected package libgcc-16-dev-armhf-cross. 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Unpacking libstdc++-16-dev:armhf (16.2.0-4) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armhf. Preparing to unpack .../62-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Setting up libc-gconv-modules-extra:armhf (2.43-7) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up libc6-armhf-cross (2.43-3cross8) ... Setting up bsdextrautils (2.42.4-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1+b1) ... Setting up libdebhelper-perl (14.5) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-5) ... Setting up m4 (1.4.21-1) ... Setting up gcc-16-base:armhf (16.2.0-4) ... Setting up file (1:5.47-4) ... Setting up gcc-16-cross-base (16.2.0-3cross1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up linux-libc-dev-armhf-cross (7.3.4-1) ... Setting up autopoint (1.0-5) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up gcc-16-arm-linux-gnueabihf-base:amd64 (16.2.0-3cross1) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up binutils-arm-linux-gnueabihf (2.47.50.20261021-1) ... Setting up automake (1:1.19-3) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (16.2.0-3cross1) ... Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up libgcc-s1-armhf-cross (16.2.0-3cross1) ... Setting up libc6-dev-armhf-cross (2.43-3cross8) ... Setting up libatomic1-armhf-cross (16.2.0-3cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up libstdc++6-armhf-cross (16.2.0-3cross1) ... Setting up cpp-16-arm-linux-gnueabihf (16.2.0-3cross1) ... Setting up libubsan1-armhf-cross (16.2.0-3cross1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.25.0-2) ... Setting up cpp-arm-linux-gnueabihf (4:16.2.0-1) ... Setting up libasan8-armhf-cross (16.2.0-3cross1) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-16-dev-armhf-cross (16.2.0-3cross1) ... Setting up gcc-16-arm-linux-gnueabihf (16.2.0-3cross1) ... Setting up debhelper (14.5) ... Setting up libstdc++-16-dev-armhf-cross (16.2.0-3cross1) ... Setting up gcc-arm-linux-gnueabihf (4:16.2.0-1) ... Setting up g++-16-arm-linux-gnueabihf (16.2.0-3cross1) ... Setting up g++-arm-linux-gnueabihf (4:16.2.0-1) ... Setting up crossbuild-essential-armhf (12.12) ... Setting up libgcc-s1:armhf (16.2.0-4) ... Setting up libc6:armhf (2.43-7) ... Setting up libasan8:armhf (16.2.0-4) ... Setting up libc6-dev:armhf (2.43-7) ... Setting up libstdc++6:armhf (16.2.0-4) ... Setting up libgomp1:armhf (16.2.0-4) ... Setting up libatomic1:armhf (16.2.0-4) ... Setting up libubsan1:armhf (16.2.0-4) ... Setting up libgcc-16-dev:armhf (16.2.0-4) ... Setting up libstdc++-16-dev:armhf (16.2.0-4) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Check architectures Thu, 12 Nov 2026 00:21:48 +0000 | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment Thu, 12 Nov 2026 00:21:48 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47.50.20261021-1 dpkg-dev_1.23.11 g++-16_16.2.0-4 gcc-16_16.2.0-4 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-4 libstdc++-16-dev-armhf-cross_16.2.0-3cross1 libstdc++6_16.2.0-4 libstdc++6-armhf-cross_16.2.0-3cross1 linux-libc-dev_7.3.4-1 Package versions: apt_3.3.7 apt-utils_3.3.7 autoconf_2.73-2 automake_1:1.19-3 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4+b1 binutils_2.47.50.20261021-1 binutils-arm-linux-gnueabihf_2.47.50.20261021-1 binutils-common_2.47.50.20261021-1 binutils-x86-64-linux-gnu_2.47.50.20261021-1 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.12-0.3 cpp_4:16.2.0-1 cpp-16_16.2.0-4 cpp-16-arm-linux-gnueabihf_16.2.0-3cross1 cpp-16-x86-64-linux-gnu_16.2.0-4 cpp-arm-linux-gnueabihf_4:16.2.0-1 cpp-x86-64-linux-gnu_4:16.2.0-1 crossbuild-essential-armhf_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-3 g++_4:16.2.0-1 g++-16_16.2.0-4 g++-16-arm-linux-gnueabihf_16.2.0-3cross1 g++-16-x86-64-linux-gnu_16.2.0-4 g++-arm-linux-gnueabihf_4:16.2.0-1 g++-x86-64-linux-gnu_4:16.2.0-1 gcc_4:16.2.0-1 gcc-16_16.2.0-4 gcc-16-arm-linux-gnueabihf_16.2.0-3cross1 gcc-16-arm-linux-gnueabihf-base_16.2.0-3cross1 gcc-16-base_16.2.0-4 gcc-16-cross-base_16.2.0-3cross1 gcc-16-x86-64-linux-gnu_16.2.0-4 gcc-arm-linux-gnueabihf_4:16.2.0-1 gcc-x86-64-linux-gnu_4:16.2.0-1 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1 groff-base_1.25.0-2 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.7 libarchive-zip-perl_1.68-1 libasan8_16.2.0-4 libasan8-armhf-cross_16.2.0-3cross1 libatomic1_16.2.0-4 libatomic1-armhf-cross_16.2.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1+b1 libbinutils_2.47.50.20261021-1 libblkid1_2.42.4-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-7 libc-dev-bin_2.43-7 libc-gconv-modules-extra_2.43-7 libc6_2.43-7 libc6-armhf-cross_2.43-3cross8 libc6-dev_2.43-7 libc6-dev-armhf-cross_2.43-3cross8 libcap-ng0_0.9.6-1+b1 libcap2_1:2.78-1+b2 libcc1-0_16.2.0-4 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47.50.20261021-1 libctf0_2.47.50.20261021-1 libdb5.3t64_5.3.28+dfsg2-12 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-4 libgcc-16-dev-armhf-cross_16.2.0-3cross1 libgcc-s1_16.2.0-4 libgcc-s1-armhf-cross_16.2.0-3cross1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-4 libgomp1-armhf-cross_16.2.0-3cross1 libgprofng0_2.47.50.20261021-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-4 libisl23_0.28-1 libitm1_16.2.0-4 libjansson4_2.15.1-1 liblsan0_16.2.0-4 liblz4-1_1.10.0-10 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.3.0-1 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libnettle8t64_3.10.2-1+b1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.49-1 libperl5.44_5.44.0-3 libpipeline1_1.5.8-3 libquadmath0_16.2.0-4 libseccomp2_2.6.1-1+b2 libselinux1_3.11-2.1+b1 libsframe3_2.47.50.20261021-1 libsmartcols1_2.42.4-1 libssl3t64_3.6.5-1 libstdc++-16-dev_16.2.0-4 libstdc++-16-dev-armhf-cross_16.2.0-3cross1 libstdc++6_16.2.0-4 libstdc++6-armhf-cross_16.2.0-3cross1 libsystemd0_262.2-1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-4 libubsan1_16.2.0-4 libubsan1-armhf-cross_16.2.0-3cross1 libuchardet0_0.0.8-2+b2 libudev1_262.2-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libxml2-16_2.15.4+dfsg-1+b1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.3.4-1 linux-libc-dev-armhf-cross_7.3.4-1 login_1:4.16.0-2+really2.42.4-1 login.defs_1:4.20.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-2 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.5-1 patch_2.8.1-1 perl_5.44.0-3 perl-base_5.44.0-3 perl-modules-5.44_5.44.0-3 po-debconf_1.0.22 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-2 tar_1.35+dfsg-7 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-4 +------------------------------------------------------------------------------+ | Build Thu, 12 Nov 2026 00:21:48 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: paml Binary: paml, paml-doc Architecture: any all Version: 4.10.10+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Pjotr Prins , Steffen Moeller , Andreas Tille , Étienne Mollier Homepage: https://github.com/abacus-gene/paml Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/paml Vcs-Git: https://salsa.debian.org/med-team/paml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 14) Package-List: paml deb science optional arch=any paml-doc deb doc optional arch=all Checksums-Sha1: 51b9df0b7e2bd77a0f6c410d564ea5745a436123 1408168 paml_4.10.10+dfsg.orig.tar.xz 6a71b681deb1dacaf19d8c896e23ea3f501b3cf0 6736 paml_4.10.10+dfsg-1.debian.tar.xz Checksums-Sha256: 7c7f75db97626daadc2cca90a2a5c3b8dae059e52987b0019386a07da93aa0ae 1408168 paml_4.10.10+dfsg.orig.tar.xz 07d3f5d3c993fbb8fd7f7609a47cad7265a27b406512edbe1c7bec8591bdd3ba 6736 paml_4.10.10+dfsg-1.debian.tar.xz Files: c4b1303d59b005c55763834a9724d3b2 1408168 paml_4.10.10+dfsg.orig.tar.xz 5d8bbaf0a52e6fff5f6269584a9a445d 6736 paml_4.10.10+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmrq1NkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGmHhAAgzSl9wV9GOUFDZoUIMz5aUEg0UZauH+s IKXsbMdsARVCp9KOMhpKmlq8XeSbd2LYKAlkSOHi8DAoEqlwyWIqKbTVMbUhJaEW X7eJdHxQS8RVvA/4N7Sffu/AjLo3AsetvL78/+V42gLxmjs0cUAcIegSzuM57eku bl9HePXfjXQeOCY1hveQq29AwWfs7uc/yMwnFS6YrB3BT21RAXyoBonj/A080r0j vGGUF0EqeNblykmVBWCF5BJdMd5W/TVXDRWzNPAJyhy59cRKnXRHNZi9fqTtwQFY MzyOcMJQ87SsFulyDhVtNhAIKEMfMw9aXL2QfxHecbqTD5e34xG5C0iSUDgZRut+ nCVYTh76fENSmueh2QUoe69Yg0HjKqmIhVp6YzqYWbhmrlpdxeArdJFxHC8CNU5A KxGGJTMx9TKR90KpM+svDwkpnf7nanFUlyBzB1oxLaR/crCjo2lwghMpg30ugiLO 22meQ203D/CwOwnd/7K8mZ2B+IcvMNvfyA+3/4FTW4FPltn/yUI+av5T/E5SmbuD 8Sj3Bw+rnR4TAtg1rMkQI62RxAUhYqLhpytaR4vltOufGHNvVmAU2wM3PEq49Fmv uGFS3iwjVAeY9e7uFbjLYpQ1VlCoWBh3096Pch5TNmuDsN9GB0cmAUr3htpK0Z3/ 1J9r5ZDMMVo= =BzJS -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./paml_4.10.10+dfsg-1.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./paml_4.10.10+dfsg-1.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting paml in /build/reproducible-path/paml-4.10.10+dfsg dpkg-source: info: unpacking paml_4.10.10+dfsg.orig.tar.xz dpkg-source: info: unpacking paml_4.10.10+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.oBklrNzO9I/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package paml dpkg-buildpackage: info: source version 4.10.10+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_auto_clean cd src && make -j1 clean make[2]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg/src' rm *.o baseml codeml basemlg mcmctree pamp evolver yn00 chi2 ds rm: cannot remove '*.o': No such file or directory rm: cannot remove 'baseml': No such file or directory rm: cannot remove 'codeml': No such file or directory rm: cannot remove 'basemlg': No such file or directory rm: cannot remove 'mcmctree': No such file or directory rm: cannot remove 'pamp': No such file or directory rm: cannot remove 'evolver': No such file or directory rm: cannot remove 'yn00': No such file or directory rm: cannot remove 'chi2': No such file or directory rm: cannot remove 'ds': No such file or directory make[2]: [Makefile:49: clean] Error 1 (ignored) make[2]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg/src' rm -f src/baseml src/basemlg src/chi2 src/codeml src/evolver src/infinitesites src/mcmctree src/pamp src/yn00 make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j1 INSTALL="install --strip-program=true" CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg/src' arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c baseml.c In file included from baseml.c:140: treesub.c: In function ‘Perturbation’: treesub.c:4648:8: warning: variable ‘step’ set but not used [-Wunused-but-set-variable=] 4648 | int step = 0, ntree = 0, nmove = 0, improve = 0, ineighb, i; | ^~~~ treesub.c: In function ‘AncestralMarginal’: treesub.c:6312:35: warning: variable ‘nchange’ set but not used [-Wunused-but-set-variable=] 6312 | int nid = tree.nnode - com.ns, nchange; | ^~~~~~~ baseml.c: In function ‘main’: baseml.c:407:7: warning: ‘memset’ used with length equal to number of elements without multiplication by element size [-Wmemset-elt-size] 407 | memset(com.spname, 0, NS * sizeof(char)); | ^~~~~~ arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c tools.c tools.c: In function ‘PopEmptyLines’: tools.c:104:8: warning: variable ‘i’ set but not used [-Wunused-but-set-variable=] 104 | int i; | ^ tools.c: In function ‘LineSearch’: tools.c:6165:30: warning: variable ‘percentUse’ set but not used [-Wunused-but-set-variable=] 6165 | double factor = 2, step1, percentUse = 0; | ^~~~~~~~~~ arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o baseml baseml.o tools.o -lm arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c codeml.c In file included from codeml.c:244: treesub.c: In function ‘setmark_61_64’: treesub.c:2342:11: warning: variable ‘nSilent’ set but not used [-Wunused-but-set-variable=] 2342 | double nSilent, nStop, nRepl; | ^~~~~~~ treesub.c: In function ‘DistanceMatNG86’: treesub.c:2385:20: warning: variable ‘SEdn’ set but not used [-Wunused-but-set-variable=] 2385 | double SEds=-1, SEdn=-1, p; | ^~~~ treesub.c:2385:11: warning: variable ‘SEds’ set but not used [-Wunused-but-set-variable=] 2385 | double SEds=-1, SEdn=-1, p; | ^~~~ treesub.c: In function ‘Perturbation’: treesub.c:4648:8: warning: variable ‘step’ set but not used [-Wunused-but-set-variable=] 4648 | int step = 0, ntree = 0, nmove = 0, improve = 0, ineighb, i; | ^~~~ treesub.c: In function ‘AncestralMarginal’: treesub.c:6312:35: warning: variable ‘nchange’ set but not used [-Wunused-but-set-variable=] 6312 | int nid = tree.nnode - com.ns, nchange; | ^~~~~~~ codeml.c: In function ‘main’: codeml.c:582:7: warning: ‘memset’ used with length equal to number of elements without multiplication by element size [-Wmemset-elt-size] 582 | memset(com.spname, 0, NS * sizeof(char)); | ^~~~~~ arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o codeml codeml.o tools.o -lm arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c basemlg.c arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o basemlg basemlg.o tools.o -lm arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c mcmctree.c mcmctree.c: In function ‘lnptC’: mcmctree.c:3000:14: warning: variable ‘nfossil’ set but not used [-Wunused-but-set-variable=] 3000 | int i, j, nfossil = 0, fossil; | ^~~~~~~ arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o mcmctree mcmctree.c tools.o -lm mcmctree.c: In function ‘lnptC’: mcmctree.c:3000:14: warning: variable ‘nfossil’ set but not used [-Wunused-but-set-variable=] 3000 | int i, j, nfossil = 0, fossil; | ^~~~~~~ arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o infinitesites -D INFINITESITES mcmctree.c tools.o -lm mcmctree.c: In function ‘lnptC’: mcmctree.c:3000:14: warning: variable ‘nfossil’ set but not used [-Wunused-but-set-variable=] 3000 | int i, j, nfossil = 0, fossil; | ^~~~~~~ arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c pamp.c arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o pamp pamp.o tools.o -lm arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c evolver.c arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o evolver evolver.o tools.o -lm arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c yn00.c In file included from yn00.c:69: treesub.c: In function ‘setmark_61_64’: treesub.c:2342:11: warning: variable ‘nSilent’ set but not used [-Wunused-but-set-variable=] 2342 | double nSilent, nStop, nRepl; | ^~~~~~~ treesub.c: In function ‘DistanceMatNG86’: treesub.c:2385:20: warning: variable ‘SEdn’ set but not used [-Wunused-but-set-variable=] 2385 | double SEds=-1, SEdn=-1, p; | ^~~~ treesub.c:2385:11: warning: variable ‘SEds’ set but not used [-Wunused-but-set-variable=] 2385 | double SEds=-1, SEdn=-1, p; | ^~~~ arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o yn00 yn00.o tools.o -lm arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chi2.o chi2.c arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o chi2 chi2.c -lm arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c ds.c arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o ds ds.o tools.o -lm make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg/src' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_install -a for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ for item in seqfile treefile ; do \ sed -i -e "s?\(${item} =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ -e "s?\(${item} =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ ${datfile} ; \ done ; \ done sed -i 's?\(aaRatefile = \)\(dat/jones.dat\)?\1/usr/lib/paml/data/\2?' debian/paml//usr/lib/paml/data/codeml.ctl make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_installexamples for d in `find debian -name examples -a -type d`; do \ find $d \! -type d | xargs -r chmod -x ; \ done make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link-arch make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_link -a mkdir -p debian/paml/etc/paml/ for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ ln -s /usr/lib/paml/data/`basename ${datfile}` debian/paml/etc/paml ; \ done make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_missing -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged debian/rules override_dh_fixperms-arch make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_fixperms -a find debian/*/usr/lib/paml/data -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_computeautosubstvars -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: Depends field of package paml: substitution variable ${misc:Depends} used, but is not defined dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'paml' in '../paml_4.10.10+dfsg-1_armhf.deb'. dpkg-deb: building package 'paml-dbgsym' in '../paml-dbgsym_4.10.10+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=any -O../paml_4.10.10+dfsg-1_armhf.buildinfo dpkg-genchanges --build=any -O../paml_4.10.10+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-11-12T00:23:02Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Thu, 12 Nov 2026 00:23:02 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/paml-4.10.10+dfsg/ -------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/paml-4.10.10+dfsg/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 12 Nov 2026 00:23:03 +0000 | +------------------------------------------------------------------------------+ paml_4.10.10+dfsg-1_armhf.changes: ---------------------------------- Format: 1.8 Date: Tue, 03 Nov 2026 11:17:32 +0100 Source: paml Binary: paml paml-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 4.10.10+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: paml - Phylogenetic Analysis by Maximum Likelihood (PAML) Closes: 1134548 Changes: paml (4.10.10+dfsg-1) unstable; urgency=medium . * Project migrated to Github - fix Homepage and Source Closes: #1134548 * d/watch: - version=5 - Use Github * New upstream version * Standards-Version: 4.7.4 (routine-update) * Reflow Uploaders field (cme) * Remove Priority field (cme) * Drop 'Rules-Requires-Root: no' from d/control (routine-update) * Set upstream metadata fields: Bug-Database, Repository-Browse. * debputy lint --auto-fix (routine-update) Checksums-Sha1: 7f98a84d0e819ad90cdcc88c85d7535889cbb143 2426544 paml-dbgsym_4.10.10+dfsg-1_armhf.deb 5a72d9518734295b09d3404600170d847f0b82fd 4829 paml_4.10.10+dfsg-1_armhf.buildinfo d7c9575fd2e7dae7a5af17394c76b2850aa640ab 616792 paml_4.10.10+dfsg-1_armhf.deb Checksums-Sha256: 4f42b4479dcf340ce15a42b844c7e3e119dae7baea94476ab1c53f81c111472f 2426544 paml-dbgsym_4.10.10+dfsg-1_armhf.deb 11ff893b47a96e567f1e303ba34fa94255f4e7f145355cef015c2a39cb1d6f3c 4829 paml_4.10.10+dfsg-1_armhf.buildinfo 4da39e5f7516fee2b35816d3544518e7fa943c68ceaf65a469651cf04ef28ed0 616792 paml_4.10.10+dfsg-1_armhf.deb Files: 2a8d59aed70ef19a957eaaec05dce46c 2426544 debug optional paml-dbgsym_4.10.10+dfsg-1_armhf.deb 42d70a6b5ae88bf9cbbbbc80be3408d9 4829 science optional paml_4.10.10+dfsg-1_armhf.buildinfo 5b20095f998703b1eae21fc70a776470 616792 science optional paml_4.10.10+dfsg-1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo Thu, 12 Nov 2026 00:23:03 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: paml Binary: paml paml-dbgsym Architecture: armhf Version: 4.10.10+dfsg-1 Checksums-Md5: 2a8d59aed70ef19a957eaaec05dce46c 2426544 paml-dbgsym_4.10.10+dfsg-1_armhf.deb 5b20095f998703b1eae21fc70a776470 616792 paml_4.10.10+dfsg-1_armhf.deb Checksums-Sha1: 7f98a84d0e819ad90cdcc88c85d7535889cbb143 2426544 paml-dbgsym_4.10.10+dfsg-1_armhf.deb d7c9575fd2e7dae7a5af17394c76b2850aa640ab 616792 paml_4.10.10+dfsg-1_armhf.deb Checksums-Sha256: 4f42b4479dcf340ce15a42b844c7e3e119dae7baea94476ab1c53f81c111472f 2426544 paml-dbgsym_4.10.10+dfsg-1_armhf.deb 4da39e5f7516fee2b35816d3544518e7fa943c68ceaf65a469651cf04ef28ed0 616792 paml_4.10.10+dfsg-1_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 12 Nov 2026 00:23:02 +0000 Build-Path: /build/reproducible-path/paml-4.10.10+dfsg Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.19-3), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4+b1), binutils (= 2.47.50.20261021-1), binutils-common (= 2.47.50.20261021-1), binutils-x86-64-linux-gnu (= 2.47.50.20261021-1), bsdextrautils (= 2.42.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.12-0.3), cpp (= 4:16.2.0-1), cpp-16 (= 16.2.0-4), cpp-16-x86-64-linux-gnu (= 16.2.0-4), cpp-x86-64-linux-gnu (= 4:16.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-3), g++ (= 4:16.2.0-1), g++-16 (= 16.2.0-4), g++-16-x86-64-linux-gnu (= 16.2.0-4), g++-x86-64-linux-gnu (= 4:16.2.0-1), gcc (= 4:16.2.0-1), gcc-16 (= 16.2.0-4), gcc-16-base (= 16.2.0-4), gcc-16-x86-64-linux-gnu (= 16.2.0-4), gcc-x86-64-linux-gnu (= 4:16.2.0-1), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1), groff-base (= 1.25.0-2), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-4), libatomic1 (= 16.2.0-4), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1+b1), libbinutils (= 2.47.50.20261021-1), libblkid1 (= 2.42.4-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcap-ng0 (= 0.9.6-1+b1), libcap2 (= 1:2.78-1+b2), libcc1-0 (= 16.2.0-4), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47.50.20261021-1), libctf0 (= 2.47.50.20261021-1), libdb5.3t64 (= 5.3.28+dfsg2-12), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-4), libgcc-s1 (= 16.2.0-4), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.2.0-4), libgprofng0 (= 2.47.50.20261021-1), libhwasan0 (= 16.2.0-4), libisl23 (= 0.28-1), libitm1 (= 16.2.0-4), libjansson4 (= 2.15.1-1), liblsan0 (= 16.2.0-4), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.49-1), libperl5.44 (= 5.44.0-3), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.2.0-4), libseccomp2 (= 2.6.1-1+b2), libselinux1 (= 3.11-2.1+b1), libsframe3 (= 2.47.50.20261021-1), libsmartcols1 (= 2.42.4-1), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-4), libstdc++6 (= 16.2.0-4), libsystemd0 (= 262.2-1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-4), libubsan1 (= 16.2.0-4), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1+b1), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.3.4-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8.1-1), perl (= 5.44.0-3), perl-base (= 5.44.0-3), perl-modules-5.44 (= 5.44.0-3), po-debconf (= 1.0.22), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-2), tar (= 1.35+dfsg-7), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1793701052" +------------------------------------------------------------------------------+ | Package contents Thu, 12 Nov 2026 00:23:03 +0000 | +------------------------------------------------------------------------------+ paml-dbgsym_4.10.10+dfsg-1_armhf.deb ------------------------------------ new Debian package, version 2.0. size 2426544 bytes: control archive=912 bytes. 660 bytes, 12 lines control 848 bytes, 8 lines md5sums Package: paml-dbgsym Source: paml Version: 4.10.10+dfsg-1 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 4289 Depends: paml (= 4.10.10+dfsg-1) Section: debug Priority: optional Description: debug symbols for paml Build-Ids: 2492caf1696c361a0473867192908c56ad437266 2be6fc146531e676c4c37f4c7c100b8f5f07f8b3 308855964415aa654d0e1b1ea15551378a461ca6 43211d403929571cfb0a06294e200ec5af740baa 4bee0eaa8bbb0f8db09e9e9c32c43354acf841fc 4e69d5e5bd318cc59f8d0ff10a38089ccb5d4950 5ae7cf1f7a54e027bae4cd2da93057f87d06fa07 950a3806931a6db7371e9b99a8e039ec4d9b83a6 drwxr-xr-x root/root 0 2026-11-03 10:17 ./ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/24/ -rw-r--r-- root/root 479264 2026-11-03 10:17 ./usr/lib/debug/.build-id/24/92caf1696c361a0473867192908c56ad437266.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/2b/ -rw-r--r-- root/root 645296 2026-11-03 10:17 ./usr/lib/debug/.build-id/2b/e6fc146531e676c4c37f4c7c100b8f5f07f8b3.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/30/ -rw-r--r-- root/root 491468 2026-11-03 10:17 ./usr/lib/debug/.build-id/30/8855964415aa654d0e1b1ea15551378a461ca6.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/43/ -rw-r--r-- root/root 469304 2026-11-03 10:17 ./usr/lib/debug/.build-id/43/211d403929571cfb0a06294e200ec5af740baa.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/4b/ -rw-r--r-- root/root 23216 2026-11-03 10:17 ./usr/lib/debug/.build-id/4b/ee0eaa8bbb0f8db09e9e9c32c43354acf841fc.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/4e/ -rw-r--r-- root/root 1044168 2026-11-03 10:17 ./usr/lib/debug/.build-id/4e/69d5e5bd318cc59f8d0ff10a38089ccb5d4950.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/5a/ -rw-r--r-- root/root 443068 2026-11-03 10:17 ./usr/lib/debug/.build-id/5a/e7cf1f7a54e027bae4cd2da93057f87d06fa07.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/95/ -rw-r--r-- root/root 774728 2026-11-03 10:17 ./usr/lib/debug/.build-id/95/0a3806931a6db7371e9b99a8e039ec4d9b83a6.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/share/doc/paml-dbgsym -> paml paml_4.10.10+dfsg-1_armhf.deb ----------------------------- new Debian package, version 2.0. size 616792 bytes: control archive=2468 bytes. 758 bytes, 16 lines control 4269 bytes, 66 lines md5sums Package: paml Version: 4.10.10+dfsg-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 2197 Depends: libc6 (>= 2.38) Section: science Priority: optional Homepage: https://github.com/abacus-gene/paml Description: Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. Commands: baseml, basemlg, chi2, codeml, mcmctree, paml-evolver, pamp, yn00 drwxr-xr-x root/root 0 2026-11-03 10:17 ./ drwxr-xr-x root/root 0 2026-11-03 10:17 ./etc/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./etc/paml/ lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/aaml.ctl -> /usr/lib/paml/data/aaml.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/baseml.ctl -> /usr/lib/paml/data/baseml.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/codeml.ctl -> /usr/lib/paml/data/codeml.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/codonml.ctl -> /usr/lib/paml/data/codonml.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/mcmctree.ctl -> /usr/lib/paml/data/mcmctree.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/pamp.ctl -> /usr/lib/paml/data/pamp.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/yn00.ctl -> /usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/bin/ lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/baseml -> ../lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/basemlg -> ../lib/debian-med/bin/basemlg lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/chi2 -> ../lib/debian-med/bin/chi2 lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/codeml -> ../lib/debian-med/bin/codeml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/mcmctree -> ../lib/debian-med/bin/mcmctree lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/paml-evolver -> ../lib/debian-med/bin/evolver lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/pamp -> ../lib/debian-med/bin/pamp lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/yn00 -> ../lib/debian-med/bin/yn00 drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 190 2026-11-03 10:17 ./usr/lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/basemlg -> baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/chi2 -> ../../paml/bin/chi2 lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/codeml -> baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/evolver -> ../../paml/bin/evolver lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/mcmctree -> baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/pamp -> baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/yn00 -> baseml drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/paml/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/paml/bin/ -rwxr-xr-x root/root 332996 2026-11-03 10:17 ./usr/lib/paml/bin/baseml -rwxr-xr-x root/root 201540 2026-11-03 10:17 ./usr/lib/paml/bin/basemlg -rwxr-xr-x root/root 66980 2026-11-03 10:17 ./usr/lib/paml/bin/chi2 -rwxr-xr-x root/root 465012 2026-11-03 10:17 ./usr/lib/paml/bin/codeml -rwxr-xr-x root/root 201460 2026-11-03 10:17 ./usr/lib/paml/bin/evolver -rwxr-xr-x root/root 267188 2026-11-03 10:17 ./usr/lib/paml/bin/mcmctree -rwxr-xr-x root/root 201380 2026-11-03 10:17 ./usr/lib/paml/bin/pamp -rwxr-xr-x root/root 201380 2026-11-03 10:17 ./usr/lib/paml/bin/yn00 drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/paml/data/ -rw-r--r-- root/root 50 2026-01-29 17:04 ./usr/lib/paml/data/3s.trees -rw-r--r-- root/root 86 2026-01-29 17:04 ./usr/lib/paml/data/4s.trees -rw-r--r-- root/root 285 2026-01-29 17:04 ./usr/lib/paml/data/5s.trees -rw-r--r-- root/root 118 2026-01-29 17:04 ./usr/lib/paml/data/6s.trees -rw-r--r-- root/root 147 2026-01-29 17:04 ./usr/lib/paml/data/9s.trees -rw-r--r-- root/root 1372 2026-01-29 17:04 ./usr/lib/paml/data/MCaa.dat -rw-r--r-- root/root 1744 2026-01-29 17:04 ./usr/lib/paml/data/MCbase.dat -rw-r--r-- root/root 1988 2026-01-29 17:04 ./usr/lib/paml/data/MCbaseRandomTree.dat -rw-r--r-- root/root 4174 2026-01-29 17:04 ./usr/lib/paml/data/MCcodon.dat -rw-r--r-- root/root 457 2026-11-03 10:17 ./usr/lib/paml/data/aaml.ctl -rw-r--r-- root/root 1675 2026-01-29 17:04 ./usr/lib/paml/data/abglobin.aa -rw-r--r-- root/root 6088 2026-01-29 17:04 ./usr/lib/paml/data/abglobin.nuc -rw-r--r-- root/root 330 2026-01-29 17:04 ./usr/lib/paml/data/abglobin.trees -rw-r--r-- root/root 1760 2026-11-03 10:17 ./usr/lib/paml/data/baseml.ctl -rw-r--r-- root/root 5720 2026-01-29 17:04 ./usr/lib/paml/data/brown.nuc -rw-r--r-- root/root 268 2026-01-29 17:04 ./usr/lib/paml/data/brown.rooted.trees -rw-r--r-- root/root 94 2026-01-29 17:04 ./usr/lib/paml/data/brown.trees -rw-r--r-- root/root 2925 2026-11-03 10:17 ./usr/lib/paml/data/codeml.ctl -rw-r--r-- root/root 608 2026-11-03 10:17 ./usr/lib/paml/data/codonml.ctl -rw-r--r-- root/root 5697 2026-01-29 17:04 ./usr/lib/paml/data/dNdSGene1.nuc drwxr-xr-x root/root 0 2026-01-29 17:04 ./usr/lib/paml/data/dat/ -rw-r--r-- root/root 1823 2026-01-29 17:04 ./usr/lib/paml/data/dat/MtZoa.dat -rw-r--r-- root/root 9944 2026-01-29 17:04 ./usr/lib/paml/data/dat/cpREV10.dat -rw-r--r-- root/root 1846 2026-01-29 17:04 ./usr/lib/paml/data/dat/cpREV64.dat -rw-r--r-- root/root 2921 2026-01-29 17:04 ./usr/lib/paml/data/dat/dayhoff-dcmut.dat -rw-r--r-- root/root 5152 2026-01-29 17:04 ./usr/lib/paml/data/dat/dayhoff.dat -rw-r--r-- root/root 1507 2026-01-29 17:04 ./usr/lib/paml/data/dat/g1974a.dat -rw-r--r-- root/root 1344 2026-01-29 17:04 ./usr/lib/paml/data/dat/g1974c.dat -rw-r--r-- root/root 1102 2026-01-29 17:04 ./usr/lib/paml/data/dat/g1974p.dat -rw-r--r-- root/root 1331 2026-01-29 17:04 ./usr/lib/paml/data/dat/g1974v.dat -rw-r--r-- root/root 1632 2026-01-29 17:04 ./usr/lib/paml/data/dat/grantham.dat -rw-r--r-- root/root 2910 2026-01-29 17:04 ./usr/lib/paml/data/dat/jones-dcmut.dat -rw-r--r-- root/root 11978 2026-01-29 17:04 ./usr/lib/paml/data/dat/jones.dat -rw-r--r-- root/root 2674 2026-01-29 17:04 ./usr/lib/paml/data/dat/lg.dat -rw-r--r-- root/root 1230 2026-01-29 17:04 ./usr/lib/paml/data/dat/miyata.dat -rw-r--r-- root/root 4772 2026-01-29 17:04 ./usr/lib/paml/data/dat/mtArt.dat -rw-r--r-- root/root 2329 2026-01-29 17:04 ./usr/lib/paml/data/dat/mtREV24.dat -rw-r--r-- root/root 3766 2026-01-29 17:04 ./usr/lib/paml/data/dat/mtmam.dat -rw-r--r-- root/root 3287 2026-01-29 17:04 ./usr/lib/paml/data/dat/wag.dat -rw-r--r-- root/root 40569 2026-01-29 17:04 ./usr/lib/paml/data/horai.nuc -rw-r--r-- root/root 62 2026-01-29 17:04 ./usr/lib/paml/data/horai.trees -rw-r--r-- root/root 4060 2026-01-29 17:04 ./usr/lib/paml/data/lysozymeSmall.nuc -rw-r--r-- root/root 734 2026-01-29 17:04 ./usr/lib/paml/data/lysozymeSmall.trees -rw-r--r-- root/root 1268 2026-11-03 10:17 ./usr/lib/paml/data/mcmctree.ctl -rw-r--r-- root/root 328 2026-01-29 17:04 ./usr/lib/paml/data/mtCDNApri.trees -rw-r--r-- root/root 70440 2026-01-29 17:04 ./usr/lib/paml/data/mtCDNApri123.txt -rw-r--r-- root/root 11521 2026-01-29 17:04 ./usr/lib/paml/data/mtprim9.nuc -rw-r--r-- root/root 366 2026-11-03 10:17 ./usr/lib/paml/data/pamp.ctl -rw-r--r-- root/root 997 2026-01-29 17:04 ./usr/lib/paml/data/stewart.aa -rw-r--r-- root/root 138 2026-01-29 17:04 ./usr/lib/paml/data/stewart.trees -rw-r--r-- root/root 703 2026-11-03 10:17 ./usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/doc/paml/ -rw-r--r-- root/root 898 2026-11-03 10:17 ./usr/share/doc/paml/README.Debian -rw-r--r-- root/root 4367 2026-01-29 17:04 ./usr/share/doc/paml/README.md.gz -rw-r--r-- root/root 278 2026-11-03 10:17 ./usr/share/doc/paml/README.test -rw-r--r-- root/root 821 2026-11-03 10:17 ./usr/share/doc/paml/changelog.Debian.gz -rw-r--r-- root/root 791 2026-11-03 10:17 ./usr/share/doc/paml/copyright drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/doc/paml/profile.d/ -rw-r--r-- root/root 147 2026-11-03 10:17 ./usr/share/doc/paml/profile.d/paml -rw-r--r-- root/root 1665 2026-11-03 10:17 ./usr/share/doc/paml/run-unit-test lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-U1gnTC/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ Sources [1297 B] Get:5 copy:/build/reproducible-path/resolver-U1gnTC/apt_archive ./ Packages [1376 B] Fetched 3288 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: sbuild-build-depends-lintian-dummy:armhf : Depends: lintian:amd64 Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:armhf : Depends: lintian:amd64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build Thu, 12 Nov 2026 00:23:09 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Thu, 12 Nov 2026 00:23:09 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 12 Nov 2026 00:23:10 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 73 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 11 Job: paml_4.10.10+dfsg-1 Lintian: error Machine Architecture: amd64 Package: paml Package-Time: 95 Source-Version: 4.10.10+dfsg-1 Space: n/a Status: successful Version: 4.10.10+dfsg-1 -------------------------------------------------------------------------------- Finished at 2026-11-12T00:23:02Z Build needed 00:01:35, no disk space