sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | paml 4.10.10+dfsg-1 (riscv64) Wed, 11 Nov 2026 22:41:15 +0000 | +==============================================================================+ Package: paml Version: 4.10.10+dfsg-1 Source Version: 4.10.10+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: riscv64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild.xJVggq_dLm... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Wed, 11 Nov 2026 22:41:19 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [12.2 MB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages [10.9 MB] Get:4 http://localhost:3142/debian unstable/main riscv64 Packages [10.5 MB] Fetched 33.7 MB in 3s (12.2 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: libperl5.42 perl-modules-5.42 The following NEW packages will be installed: libperl5.44 perl-modules-5.44 The following packages will be upgraded: linux-libc-dev perl perl-base 3 upgraded, 2 newly installed, 2 to remove and 0 not upgraded. Need to get 11.8 MB of archives. After this operation, 1320 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 perl-modules-5.44 all 5.44.0-3 [3261 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libperl5.44 amd64 5.44.0-3 [4354 kB] Get:3 http://localhost:3142/debian unstable/main amd64 perl amd64 5.44.0-3 [266 kB] Get:4 http://localhost:3142/debian unstable/main amd64 perl-base amd64 5.44.0-3 [1921 kB] Get:5 http://localhost:3142/debian unstable/main amd64 linux-libc-dev all 7.3.4-1 [2030 kB] Fetched 11.8 MB in 0s (187 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12045 files and directories currently installed.) Preparing to unpack .../perl_5.44.0-3_amd64.deb ... Unpacking perl (5.44.0-3) over (5.42.3-1) ... Selecting previously unselected package perl-modules-5.44. Preparing to unpack .../perl-modules-5.44_5.44.0-3_all.deb ... Unpacking perl-modules-5.44 (5.44.0-3) ... Selecting previously unselected package libperl5.44:amd64. Preparing to unpack .../libperl5.44_5.44.0-3_amd64.deb ... Unpacking libperl5.44:amd64 (5.44.0-3) ... Preparing to unpack .../perl-base_5.44.0-3_amd64.deb ... Unpacking perl-base (5.44.0-3) over (5.42.3-1) ... Setting up perl-base (5.44.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14228 files and directories currently installed.) Removing libperl5.42:amd64 (5.42.3-1) ... Removing perl-modules-5.42 (5.42.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12078 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_7.3.4-1_all.deb ... Unpacking linux-libc-dev (7.3.4-1) over (7.3.3-1) ... Setting up linux-libc-dev (7.3.4-1) ... Setting up perl-modules-5.44 (5.44.0-3) ... Setting up libperl5.44:amd64 (5.44.0-3) ... Setting up perl (5.44.0-3) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Fetch source files Wed, 11 Nov 2026 22:41:25 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'paml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/paml.git Please use: git clone https://salsa.debian.org/med-team/paml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1417 kB of source archives. Get:1 http://localhost:3142/debian unstable/main paml 4.10.10+dfsg-1 (dsc) [2135 B] Get:2 http://localhost:3142/debian unstable/main paml 4.10.10+dfsg-1 (tar) [1408 kB] Get:3 http://localhost:3142/debian unstable/main paml 4.10.10+dfsg-1 (diff) [6736 B] Fetched 1417 kB in 1s (2228 kB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 11 Nov 2026 22:41:26 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-riscv64:amd64, apt-utils:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 Filtered Build-Depends: debhelper-compat (= 14), libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-riscv64:amd64, apt-utils:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-9Rfvce/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ Sources [721 B] Get:5 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ Packages [766 B] Fetched 2096 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils cpp-16-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-16-base:riscv64 gcc-16-cross-base gcc-16-riscv64-linux-gnu gcc-16-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libc-gconv-modules-extra:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:riscv64 libgcc-16-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgomp1:riscv64 libgomp1-riscv64-cross libitm1:riscv64 libitm1-riscv64-cross liblsan0:riscv64 liblsan0-riscv64-cross libmagic-mgc libmagic1t64 libpipeline1 libstdc++-16-dev:riscv64 libstdc++-16-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-riscv64-cross m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-riscv64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:riscv64 libc-l10n:riscv64 locales:riscv64 libnss-nis:riscv64 manpages-dev:riscv64 libstdc++-16-doc:riscv64 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests libidn2-0:riscv64 libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils cpp-16-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-16-base:riscv64 gcc-16-cross-base gcc-16-riscv64-linux-gnu gcc-16-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libc-gconv-modules-extra:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:riscv64 libgcc-16-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgomp1:riscv64 libgomp1-riscv64-cross libitm1:riscv64 libitm1-riscv64-cross liblsan0:riscv64 liblsan0-riscv64-cross libmagic-mgc libmagic1t64 libpipeline1 libstdc++-16-dev:riscv64 libstdc++-16-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-riscv64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:riscv64 sensible-utils 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 143 MB of archives. After this operation, 847 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [904 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.25.0-2 [1200 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.19-3 [892 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-riscv64-linux-gnu amd64 2.47.50.20261021-1 [1588 kB] Get:18 http://localhost:3142/debian unstable/main amd64 gcc-16-riscv64-linux-gnu-base amd64 16.2.0-3cross1 [38.9 kB] Get:19 http://localhost:3142/debian unstable/main amd64 cpp-16-riscv64-linux-gnu amd64 16.2.0-3cross1 [17.5 MB] Get:20 http://localhost:3142/debian unstable/main amd64 cpp-riscv64-linux-gnu amd64 4:16.2.0-1 [4524 B] Get:21 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libc6-riscv64-cross all 2.43-3cross8 [1229 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libgcc-s1-riscv64-cross all 16.2.0-3cross1 [74.3 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libgomp1-riscv64-cross all 16.2.0-3cross1 [137 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libitm1-riscv64-cross all 16.2.0-3cross1 [25.6 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libatomic1-riscv64-cross all 16.2.0-3cross1 [8604 B] Get:27 http://localhost:3142/debian unstable/main amd64 libasan8-riscv64-cross all 16.2.0-3cross1 [2982 kB] Get:28 http://localhost:3142/debian unstable/main amd64 liblsan0-riscv64-cross all 16.2.0-3cross1 [1341 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libtsan2-riscv64-cross all 16.2.0-3cross1 [2695 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libstdc++6-riscv64-cross all 16.2.0-3cross1 [750 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libubsan1-riscv64-cross all 16.2.0-3cross1 [1190 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-riscv64-cross all 16.2.0-3cross1 [5847 kB] Get:33 http://localhost:3142/debian unstable/main amd64 gcc-16-riscv64-linux-gnu amd64 16.2.0-3cross1 [34.3 MB] Get:34 http://localhost:3142/debian unstable/main amd64 gcc-riscv64-linux-gnu amd64 4:16.2.0-1 [1444 B] Get:35 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-riscv64-cross all 7.3.4-1 [12.0 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libc6-dev-riscv64-cross all 2.43-3cross8 [3495 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-riscv64-cross all 16.2.0-3cross1 [6916 kB] Get:38 http://localhost:3142/debian unstable/main amd64 g++-16-riscv64-linux-gnu amd64 16.2.0-3cross1 [18.6 MB] Get:39 http://localhost:3142/debian unstable/main amd64 g++-riscv64-linux-gnu amd64 4:16.2.0-1 [1200 B] Get:40 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-riscv64 all 12.12 [3544 B] Get:41 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:43 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:46 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:47 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:48 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1+b1 [684 kB] Get:51 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:52 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:53 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:54 http://localhost:3142/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:55 http://localhost:3142/debian unstable/main riscv64 gcc-16-base riscv64 16.2.0-4 [39.3 kB] Get:56 http://localhost:3142/debian unstable/main riscv64 libgcc-s1 riscv64 16.2.0-4 [74.2 kB] Get:57 http://localhost:3142/debian unstable/main riscv64 libc-gconv-modules-extra riscv64 2.43-7 [1104 kB] Get:58 http://localhost:3142/debian unstable/main riscv64 libc6 riscv64 2.43-7 [1465 kB] Get:59 http://localhost:3142/debian unstable/main riscv64 libasan8 riscv64 16.2.0-4 [2994 kB] Get:60 http://localhost:3142/debian unstable/main riscv64 libatomic1 riscv64 16.2.0-4 [8508 B] Get:61 http://localhost:3142/debian unstable/main riscv64 libc6-dev riscv64 2.43-7 [3497 kB] Get:62 http://localhost:3142/debian unstable/main riscv64 libgomp1 riscv64 16.2.0-4 [137 kB] Get:63 http://localhost:3142/debian unstable/main riscv64 libitm1 riscv64 16.2.0-4 [25.5 kB] Get:64 http://localhost:3142/debian unstable/main riscv64 liblsan0 riscv64 16.2.0-4 [1342 kB] Get:65 http://localhost:3142/debian unstable/main riscv64 libtsan2 riscv64 16.2.0-4 [2706 kB] Get:66 http://localhost:3142/debian unstable/main riscv64 libstdc++6 riscv64 16.2.0-4 [774 kB] Get:67 http://localhost:3142/debian unstable/main riscv64 libubsan1 riscv64 16.2.0-4 [1191 kB] Get:68 http://localhost:3142/debian unstable/main riscv64 libgcc-16-dev riscv64 16.2.0-4 [5793 kB] Get:69 http://localhost:3142/debian unstable/main riscv64 libstdc++-16-dev riscv64 16.2.0-4 [10.6 MB] Preconfiguring packages ... Fetched 143 MB in 1s (209 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12078 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-5_amd64.deb ... Unpacking gettext-base (1.0-5) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.25.0-2_amd64.deb ... Unpacking groff-base (1.25.0-2) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.42.4-1_amd64.deb ... Unpacking bsdextrautils (2.42.4-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.73-2_all.deb ... Unpacking autoconf (2.73-2) ... Selecting previously unselected package autotools-dev. 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Setting up m4 (1.4.21-1) ... Setting up gcc-16-base:riscv64 (16.2.0-4) ... Setting up file (1:5.47-4) ... Setting up gcc-16-cross-base (16.2.0-3cross1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up autopoint (1.0-5) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up linux-libc-dev-riscv64-cross (7.3.4-1) ... Setting up libc6-riscv64-cross (2.43-3cross8) ... Setting up libgomp1-riscv64-cross (16.2.0-3cross1) ... Setting up libatomic1-riscv64-cross (16.2.0-3cross1) ... Setting up cpp-16-riscv64-linux-gnu (16.2.0-3cross1) ... Setting up automake (1:1.19-3) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up libitm1-riscv64-cross (16.2.0-3cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up libgcc-s1-riscv64-cross (16.2.0-3cross1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.25.0-2) ... Setting up libc6-dev-riscv64-cross (2.43-3cross8) ... Setting up libasan8-riscv64-cross (16.2.0-3cross1) ... Setting up cpp-riscv64-linux-gnu (4:16.2.0-1) ... Setting up libstdc++6-riscv64-cross (16.2.0-3cross1) ... Setting up libubsan1-riscv64-cross (16.2.0-3cross1) ... Setting up po-debconf (1.0.22) ... Setting up liblsan0-riscv64-cross (16.2.0-3cross1) ... Setting up libtsan2-riscv64-cross (16.2.0-3cross1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-16-dev-riscv64-cross (16.2.0-3cross1) ... Setting up debhelper (14.5) ... Setting up libstdc++-16-dev-riscv64-cross (16.2.0-3cross1) ... Setting up gcc-16-riscv64-linux-gnu (16.2.0-3cross1) ... Setting up gcc-riscv64-linux-gnu (4:16.2.0-1) ... Setting up g++-16-riscv64-linux-gnu (16.2.0-3cross1) ... Setting up g++-riscv64-linux-gnu (4:16.2.0-1) ... Setting up crossbuild-essential-riscv64 (12.12) ... Setting up libgcc-s1:riscv64 (16.2.0-4) ... Setting up libc6:riscv64 (2.43-7) ... Setting up libasan8:riscv64 (16.2.0-4) ... Setting up libc6-dev:riscv64 (2.43-7) ... Setting up libtsan2:riscv64 (16.2.0-4) ... Setting up libstdc++6:riscv64 (16.2.0-4) ... Setting up liblsan0:riscv64 (16.2.0-4) ... Setting up libitm1:riscv64 (16.2.0-4) ... Setting up libgomp1:riscv64 (16.2.0-4) ... Setting up libatomic1:riscv64 (16.2.0-4) ... Setting up libubsan1:riscv64 (16.2.0-4) ... Setting up libgcc-16-dev:riscv64 (16.2.0-4) ... Setting up libstdc++-16-dev:riscv64 (16.2.0-4) ... Setting up sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Check architectures Wed, 11 Nov 2026 22:41:40 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment Wed, 11 Nov 2026 22:41:40 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47.50.20261021-1 dpkg-dev_1.23.11 g++-16_16.2.0-4 gcc-16_16.2.0-4 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-4 libstdc++-16-dev-riscv64-cross_16.2.0-3cross1 libstdc++6_16.2.0-4 libstdc++6-riscv64-cross_16.2.0-3cross1 linux-libc-dev_7.3.4-1 Package versions: apt_3.3.7 apt-utils_3.3.7 autoconf_2.73-2 automake_1:1.19-3 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4+b1 binutils_2.47.50.20261021-1 binutils-common_2.47.50.20261021-1 binutils-riscv64-linux-gnu_2.47.50.20261021-1 binutils-x86-64-linux-gnu_2.47.50.20261021-1 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.12-0.3 cpp_4:16.2.0-1 cpp-16_16.2.0-4 cpp-16-riscv64-linux-gnu_16.2.0-3cross1 cpp-16-x86-64-linux-gnu_16.2.0-4 cpp-riscv64-linux-gnu_4:16.2.0-1 cpp-x86-64-linux-gnu_4:16.2.0-1 crossbuild-essential-riscv64_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-3 g++_4:16.2.0-1 g++-16_16.2.0-4 g++-16-riscv64-linux-gnu_16.2.0-3cross1 g++-16-x86-64-linux-gnu_16.2.0-4 g++-riscv64-linux-gnu_4:16.2.0-1 g++-x86-64-linux-gnu_4:16.2.0-1 gcc_4:16.2.0-1 gcc-16_16.2.0-4 gcc-16-base_16.2.0-4 gcc-16-cross-base_16.2.0-3cross1 gcc-16-riscv64-linux-gnu_16.2.0-3cross1 gcc-16-riscv64-linux-gnu-base_16.2.0-3cross1 gcc-16-x86-64-linux-gnu_16.2.0-4 gcc-riscv64-linux-gnu_4:16.2.0-1 gcc-x86-64-linux-gnu_4:16.2.0-1 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1 groff-base_1.25.0-2 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.7 libarchive-zip-perl_1.68-1 libasan8_16.2.0-4 libasan8-riscv64-cross_16.2.0-3cross1 libatomic1_16.2.0-4 libatomic1-riscv64-cross_16.2.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1+b1 libbinutils_2.47.50.20261021-1 libblkid1_2.42.4-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-7 libc-dev-bin_2.43-7 libc-gconv-modules-extra_2.43-7 libc6_2.43-7 libc6-dev_2.43-7 libc6-dev-riscv64-cross_2.43-3cross8 libc6-riscv64-cross_2.43-3cross8 libcap-ng0_0.9.6-1+b1 libcap2_1:2.78-1+b2 libcc1-0_16.2.0-4 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47.50.20261021-1 libctf0_2.47.50.20261021-1 libdb5.3t64_5.3.28+dfsg2-12 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-4 libgcc-16-dev-riscv64-cross_16.2.0-3cross1 libgcc-s1_16.2.0-4 libgcc-s1-riscv64-cross_16.2.0-3cross1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-4 libgomp1-riscv64-cross_16.2.0-3cross1 libgprofng0_2.47.50.20261021-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-4 libisl23_0.28-1 libitm1_16.2.0-4 libitm1-riscv64-cross_16.2.0-3cross1 libjansson4_2.15.1-1 liblsan0_16.2.0-4 liblsan0-riscv64-cross_16.2.0-3cross1 liblz4-1_1.10.0-10 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.3.0-1 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libnettle8t64_3.10.2-1+b1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.49-1 libperl5.44_5.44.0-3 libpipeline1_1.5.8-3 libquadmath0_16.2.0-4 libseccomp2_2.6.1-1+b2 libselinux1_3.11-2.1+b1 libsframe3_2.47.50.20261021-1 libsmartcols1_2.42.4-1 libssl3t64_3.6.5-1 libstdc++-16-dev_16.2.0-4 libstdc++-16-dev-riscv64-cross_16.2.0-3cross1 libstdc++6_16.2.0-4 libstdc++6-riscv64-cross_16.2.0-3cross1 libsystemd0_262.2-1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-4 libtsan2-riscv64-cross_16.2.0-3cross1 libubsan1_16.2.0-4 libubsan1-riscv64-cross_16.2.0-3cross1 libuchardet0_0.0.8-2+b2 libudev1_262.2-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libxml2-16_2.15.4+dfsg-1+b1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.3.4-1 linux-libc-dev-riscv64-cross_7.3.4-1 login_1:4.16.0-2+really2.42.4-1 login.defs_1:4.20.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-2 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.5-1 patch_2.8.1-1 perl_5.44.0-3 perl-base_5.44.0-3 perl-modules-5.44_5.44.0-3 po-debconf_1.0.22 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-2 tar_1.35+dfsg-7 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-4 +------------------------------------------------------------------------------+ | Build Wed, 11 Nov 2026 22:41:40 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: paml Binary: paml, paml-doc Architecture: any all Version: 4.10.10+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Pjotr Prins , Steffen Moeller , Andreas Tille , Étienne Mollier Homepage: https://github.com/abacus-gene/paml Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/paml Vcs-Git: https://salsa.debian.org/med-team/paml.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 14) Package-List: paml deb science optional arch=any paml-doc deb doc optional arch=all Checksums-Sha1: 51b9df0b7e2bd77a0f6c410d564ea5745a436123 1408168 paml_4.10.10+dfsg.orig.tar.xz 6a71b681deb1dacaf19d8c896e23ea3f501b3cf0 6736 paml_4.10.10+dfsg-1.debian.tar.xz Checksums-Sha256: 7c7f75db97626daadc2cca90a2a5c3b8dae059e52987b0019386a07da93aa0ae 1408168 paml_4.10.10+dfsg.orig.tar.xz 07d3f5d3c993fbb8fd7f7609a47cad7265a27b406512edbe1c7bec8591bdd3ba 6736 paml_4.10.10+dfsg-1.debian.tar.xz Files: c4b1303d59b005c55763834a9724d3b2 1408168 paml_4.10.10+dfsg.orig.tar.xz 5d8bbaf0a52e6fff5f6269584a9a445d 6736 paml_4.10.10+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmrq1NkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGmHhAAgzSl9wV9GOUFDZoUIMz5aUEg0UZauH+s IKXsbMdsARVCp9KOMhpKmlq8XeSbd2LYKAlkSOHi8DAoEqlwyWIqKbTVMbUhJaEW X7eJdHxQS8RVvA/4N7Sffu/AjLo3AsetvL78/+V42gLxmjs0cUAcIegSzuM57eku bl9HePXfjXQeOCY1hveQq29AwWfs7uc/yMwnFS6YrB3BT21RAXyoBonj/A080r0j vGGUF0EqeNblykmVBWCF5BJdMd5W/TVXDRWzNPAJyhy59cRKnXRHNZi9fqTtwQFY MzyOcMJQ87SsFulyDhVtNhAIKEMfMw9aXL2QfxHecbqTD5e34xG5C0iSUDgZRut+ nCVYTh76fENSmueh2QUoe69Yg0HjKqmIhVp6YzqYWbhmrlpdxeArdJFxHC8CNU5A KxGGJTMx9TKR90KpM+svDwkpnf7nanFUlyBzB1oxLaR/crCjo2lwghMpg30ugiLO 22meQ203D/CwOwnd/7K8mZ2B+IcvMNvfyA+3/4FTW4FPltn/yUI+av5T/E5SmbuD 8Sj3Bw+rnR4TAtg1rMkQI62RxAUhYqLhpytaR4vltOufGHNvVmAU2wM3PEq49Fmv uGFS3iwjVAeY9e7uFbjLYpQ1VlCoWBh3096Pch5TNmuDsN9GB0cmAUr3htpK0Z3/ 1J9r5ZDMMVo= =BzJS -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./paml_4.10.10+dfsg-1.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./paml_4.10.10+dfsg-1.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting paml in /build/reproducible-path/paml-4.10.10+dfsg dpkg-source: info: unpacking paml_4.10.10+dfsg.orig.tar.xz dpkg-source: info: unpacking paml_4.10.10+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.riscv64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.sKvaQTKWjr/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ariscv64 -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package paml dpkg-buildpackage: info: source version 4.10.10+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type riscv64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_auto_clean cd src && make -j1 clean make[2]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg/src' rm *.o baseml codeml basemlg mcmctree pamp evolver yn00 chi2 ds rm: cannot remove '*.o': No such file or directory rm: cannot remove 'baseml': No such file or directory rm: cannot remove 'codeml': No such file or directory rm: cannot remove 'basemlg': No such file or directory rm: cannot remove 'mcmctree': No such file or directory rm: cannot remove 'pamp': No such file or directory rm: cannot remove 'evolver': No such file or directory rm: cannot remove 'yn00': No such file or directory rm: cannot remove 'chi2': No such file or directory rm: cannot remove 'ds': No such file or directory make[2]: [Makefile:49: clean] Error 1 (ignored) make[2]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg/src' rm -f src/baseml src/basemlg src/chi2 src/codeml src/evolver src/infinitesites src/mcmctree src/pamp src/yn00 make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j1 INSTALL="install --strip-program=true" CXX=riscv64-linux-gnu-g\+\+ CC=riscv64-linux-gnu-gcc make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg/src' riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c baseml.c In file included from baseml.c:140: treesub.c: In function ‘Perturbation’: treesub.c:4648:8: warning: variable ‘step’ set but not used [-Wunused-but-set-variable=] 4648 | int step = 0, ntree = 0, nmove = 0, improve = 0, ineighb, i; | ^~~~ treesub.c: In function ‘AncestralMarginal’: treesub.c:6312:35: warning: variable ‘nchange’ set but not used [-Wunused-but-set-variable=] 6312 | int nid = tree.nnode - com.ns, nchange; | ^~~~~~~ baseml.c: In function ‘main’: baseml.c:407:7: warning: ‘memset’ used with length equal to number of elements without multiplication by element size [-Wmemset-elt-size] 407 | memset(com.spname, 0, NS * sizeof(char)); | ^~~~~~ riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c tools.c tools.c: In function ‘PopEmptyLines’: tools.c:104:8: warning: variable ‘i’ set but not used [-Wunused-but-set-variable=] 104 | int i; | ^ tools.c: In function ‘LineSearch’: tools.c:6165:30: warning: variable ‘percentUse’ set but not used [-Wunused-but-set-variable=] 6165 | double factor = 2, step1, percentUse = 0; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o baseml baseml.o tools.o -lm riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c codeml.c In file included from codeml.c:244: treesub.c: In function ‘setmark_61_64’: treesub.c:2342:11: warning: variable ‘nSilent’ set but not used [-Wunused-but-set-variable=] 2342 | double nSilent, nStop, nRepl; | ^~~~~~~ treesub.c: In function ‘DistanceMatNG86’: treesub.c:2385:20: warning: variable ‘SEdn’ set but not used [-Wunused-but-set-variable=] 2385 | double SEds=-1, SEdn=-1, p; | ^~~~ treesub.c:2385:11: warning: variable ‘SEds’ set but not used [-Wunused-but-set-variable=] 2385 | double SEds=-1, SEdn=-1, p; | ^~~~ treesub.c: In function ‘Perturbation’: treesub.c:4648:8: warning: variable ‘step’ set but not used [-Wunused-but-set-variable=] 4648 | int step = 0, ntree = 0, nmove = 0, improve = 0, ineighb, i; | ^~~~ treesub.c: In function ‘AncestralMarginal’: treesub.c:6312:35: warning: variable ‘nchange’ set but not used [-Wunused-but-set-variable=] 6312 | int nid = tree.nnode - com.ns, nchange; | ^~~~~~~ codeml.c: In function ‘main’: codeml.c:582:7: warning: ‘memset’ used with length equal to number of elements without multiplication by element size [-Wmemset-elt-size] 582 | memset(com.spname, 0, NS * sizeof(char)); | ^~~~~~ riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o codeml codeml.o tools.o -lm riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c basemlg.c riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o basemlg basemlg.o tools.o -lm riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c mcmctree.c mcmctree.c: In function ‘lnptC’: mcmctree.c:3000:14: warning: variable ‘nfossil’ set but not used [-Wunused-but-set-variable=] 3000 | int i, j, nfossil = 0, fossil; | ^~~~~~~ riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o mcmctree mcmctree.c tools.o -lm mcmctree.c: In function ‘lnptC’: mcmctree.c:3000:14: warning: variable ‘nfossil’ set but not used [-Wunused-but-set-variable=] 3000 | int i, j, nfossil = 0, fossil; | ^~~~~~~ riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o infinitesites -D INFINITESITES mcmctree.c tools.o -lm mcmctree.c: In function ‘lnptC’: mcmctree.c:3000:14: warning: variable ‘nfossil’ set but not used [-Wunused-but-set-variable=] 3000 | int i, j, nfossil = 0, fossil; | ^~~~~~~ riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c pamp.c riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o pamp pamp.o tools.o -lm riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c evolver.c riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o evolver evolver.o tools.o -lm riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c yn00.c In file included from yn00.c:69: treesub.c: In function ‘setmark_61_64’: treesub.c:2342:11: warning: variable ‘nSilent’ set but not used [-Wunused-but-set-variable=] 2342 | double nSilent, nStop, nRepl; | ^~~~~~~ treesub.c: In function ‘DistanceMatNG86’: treesub.c:2385:20: warning: variable ‘SEdn’ set but not used [-Wunused-but-set-variable=] 2385 | double SEds=-1, SEdn=-1, p; | ^~~~ treesub.c:2385:11: warning: variable ‘SEds’ set but not used [-Wunused-but-set-variable=] 2385 | double SEds=-1, SEdn=-1, p; | ^~~~ riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o yn00 yn00.o tools.o -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chi2.o chi2.c riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o chi2 chi2.c -lm riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -c ds.c riscv64-linux-gnu-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.10.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wno-unused-variable -Wno-unused-result -Wl,-z,relro -Wl,-z,now -o ds ds.o tools.o -lm make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg/src' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_install -a for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ for item in seqfile treefile ; do \ sed -i -e "s?\(${item} =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ -e "s?\(${item} =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ ${datfile} ; \ done ; \ done sed -i 's?\(aaRatefile = \)\(dat/jones.dat\)?\1/usr/lib/paml/data/\2?' debian/paml//usr/lib/paml/data/codeml.ctl make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_installexamples for d in `find debian -name examples -a -type d`; do \ find $d \! -type d | xargs -r chmod -x ; \ done make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link-arch make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_link -a mkdir -p debian/paml/etc/paml/ for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ ln -s /usr/lib/paml/data/`basename ${datfile}` debian/paml/etc/paml ; \ done make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_missing -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged debian/rules override_dh_fixperms-arch make[1]: Entering directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_fixperms -a find debian/*/usr/lib/paml/data -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/paml-4.10.10+dfsg' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_computeautosubstvars -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: Depends field of package paml: substitution variable ${misc:Depends} used, but is not defined dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'paml' in '../paml_4.10.10+dfsg-1_riscv64.deb'. dpkg-deb: building package 'paml-dbgsym' in '../paml-dbgsym_4.10.10+dfsg-1_riscv64.deb'. dpkg-genbuildinfo --build=any -O../paml_4.10.10+dfsg-1_riscv64.buildinfo dpkg-genchanges --build=any -O../paml_4.10.10+dfsg-1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-11-11T22:42:59Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Wed, 11 Nov 2026 22:42:59 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/paml-4.10.10+dfsg/ -------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/paml-4.10.10+dfsg/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 11 Nov 2026 22:42:59 +0000 | +------------------------------------------------------------------------------+ paml_4.10.10+dfsg-1_riscv64.changes: ------------------------------------ Format: 1.8 Date: Tue, 03 Nov 2026 11:17:32 +0100 Source: paml Binary: paml paml-dbgsym Built-For-Profiles: cross nocheck Architecture: riscv64 Version: 4.10.10+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: paml - Phylogenetic Analysis by Maximum Likelihood (PAML) Closes: 1134548 Changes: paml (4.10.10+dfsg-1) unstable; urgency=medium . * Project migrated to Github - fix Homepage and Source Closes: #1134548 * d/watch: - version=5 - Use Github * New upstream version * Standards-Version: 4.7.4 (routine-update) * Reflow Uploaders field (cme) * Remove Priority field (cme) * Drop 'Rules-Requires-Root: no' from d/control (routine-update) * Set upstream metadata fields: Bug-Database, Repository-Browse. * debputy lint --auto-fix (routine-update) Checksums-Sha1: 8e4c087937d00b7b68d052c602c528d54afcf99d 2668968 paml-dbgsym_4.10.10+dfsg-1_riscv64.deb 35212d7ed8515528f91d7c432d2c1d6367912146 4843 paml_4.10.10+dfsg-1_riscv64.buildinfo 9eeceb9e3594681eef8e8126fd479c984d9b4dfc 689196 paml_4.10.10+dfsg-1_riscv64.deb Checksums-Sha256: 45a469de9effeb1cf18b5ad8cc8bbebd5dae160812ac8e158b2e24ed60ed00e2 2668968 paml-dbgsym_4.10.10+dfsg-1_riscv64.deb 463470db1fa2d1d468edf90cca7862d8b045ab49e09001dd1932c0c2379b1f37 4843 paml_4.10.10+dfsg-1_riscv64.buildinfo 0c2b13a2ef128247e6811d0946f6faf2161fb06bc4dde28409c14c0b8a46f997 689196 paml_4.10.10+dfsg-1_riscv64.deb Files: c76b230e9e50f6a41472e5dffca85ded 2668968 debug optional paml-dbgsym_4.10.10+dfsg-1_riscv64.deb 1a669b3db45613f273a61dd1a755fd3e 4843 science optional paml_4.10.10+dfsg-1_riscv64.buildinfo be3ffa2350fef8f8b77c280ddea8f3d5 689196 science optional paml_4.10.10+dfsg-1_riscv64.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 11 Nov 2026 22:42:59 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: paml Binary: paml paml-dbgsym Architecture: riscv64 Version: 4.10.10+dfsg-1 Checksums-Md5: c76b230e9e50f6a41472e5dffca85ded 2668968 paml-dbgsym_4.10.10+dfsg-1_riscv64.deb be3ffa2350fef8f8b77c280ddea8f3d5 689196 paml_4.10.10+dfsg-1_riscv64.deb Checksums-Sha1: 8e4c087937d00b7b68d052c602c528d54afcf99d 2668968 paml-dbgsym_4.10.10+dfsg-1_riscv64.deb 9eeceb9e3594681eef8e8126fd479c984d9b4dfc 689196 paml_4.10.10+dfsg-1_riscv64.deb Checksums-Sha256: 45a469de9effeb1cf18b5ad8cc8bbebd5dae160812ac8e158b2e24ed60ed00e2 2668968 paml-dbgsym_4.10.10+dfsg-1_riscv64.deb 0c2b13a2ef128247e6811d0946f6faf2161fb06bc4dde28409c14c0b8a46f997 689196 paml_4.10.10+dfsg-1_riscv64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 11 Nov 2026 22:42:58 +0000 Build-Path: /build/reproducible-path/paml-4.10.10+dfsg Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.19-3), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4+b1), binutils (= 2.47.50.20261021-1), binutils-common (= 2.47.50.20261021-1), binutils-x86-64-linux-gnu (= 2.47.50.20261021-1), bsdextrautils (= 2.42.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.12-0.3), cpp (= 4:16.2.0-1), cpp-16 (= 16.2.0-4), cpp-16-x86-64-linux-gnu (= 16.2.0-4), cpp-x86-64-linux-gnu (= 4:16.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-3), g++ (= 4:16.2.0-1), g++-16 (= 16.2.0-4), g++-16-x86-64-linux-gnu (= 16.2.0-4), g++-x86-64-linux-gnu (= 4:16.2.0-1), gcc (= 4:16.2.0-1), gcc-16 (= 16.2.0-4), gcc-16-base (= 16.2.0-4), gcc-16-x86-64-linux-gnu (= 16.2.0-4), gcc-x86-64-linux-gnu (= 4:16.2.0-1), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1), groff-base (= 1.25.0-2), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-4), libatomic1 (= 16.2.0-4), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1+b1), libbinutils (= 2.47.50.20261021-1), libblkid1 (= 2.42.4-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcap-ng0 (= 0.9.6-1+b1), libcap2 (= 1:2.78-1+b2), libcc1-0 (= 16.2.0-4), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47.50.20261021-1), libctf0 (= 2.47.50.20261021-1), libdb5.3t64 (= 5.3.28+dfsg2-12), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-4), libgcc-s1 (= 16.2.0-4), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.2.0-4), libgprofng0 (= 2.47.50.20261021-1), libhwasan0 (= 16.2.0-4), libisl23 (= 0.28-1), libitm1 (= 16.2.0-4), libjansson4 (= 2.15.1-1), liblsan0 (= 16.2.0-4), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.49-1), libperl5.44 (= 5.44.0-3), libpipeline1 (= 1.5.8-3), libquadmath0 (= 16.2.0-4), libseccomp2 (= 2.6.1-1+b2), libselinux1 (= 3.11-2.1+b1), libsframe3 (= 2.47.50.20261021-1), libsmartcols1 (= 2.42.4-1), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-4), libstdc++6 (= 16.2.0-4), libsystemd0 (= 262.2-1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-4), libubsan1 (= 16.2.0-4), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1+b1), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.3.4-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8.1-1), perl (= 5.44.0-3), perl-base (= 5.44.0-3), perl-modules-5.44 (= 5.44.0-3), po-debconf (= 1.0.22), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-2), tar (= 1.35+dfsg-7), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1793701052" +------------------------------------------------------------------------------+ | Package contents Wed, 11 Nov 2026 22:42:59 +0000 | +------------------------------------------------------------------------------+ paml-dbgsym_4.10.10+dfsg-1_riscv64.deb -------------------------------------- new Debian package, version 2.0. size 2668968 bytes: control archive=912 bytes. 662 bytes, 12 lines control 848 bytes, 8 lines md5sums Package: paml-dbgsym Source: paml Version: 4.10.10+dfsg-1 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 4680 Depends: paml (= 4.10.10+dfsg-1) Section: debug Priority: optional Description: debug symbols for paml Build-Ids: 1409f04b27add83de6b13030f8a7f1e426ed88d8 24fa0088b804000e8e539de1e1674f4179158dae 481ef3f243fa717fa30f7a0b46e2884899f2b692 58a70840517d85ee714eceedae16a5ce99540e7e 7bb367b90e0ae40571149e5ce398f782147c18bb 899a2d885601e078b0209c4ff12c53885587259b d3c866ddbc3acb7f916be8b0fb46b3f23b731db6 e3b2e94b354953311b39ccfeaa7e093bf1d2affa drwxr-xr-x root/root 0 2026-11-03 10:17 ./ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/14/ -rw-r--r-- root/root 517784 2026-11-03 10:17 ./usr/lib/debug/.build-id/14/09f04b27add83de6b13030f8a7f1e426ed88d8.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/24/ -rw-r--r-- root/root 704984 2026-11-03 10:17 ./usr/lib/debug/.build-id/24/fa0088b804000e8e539de1e1674f4179158dae.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/48/ -rw-r--r-- root/root 1128856 2026-11-03 10:17 ./usr/lib/debug/.build-id/48/1ef3f243fa717fa30f7a0b46e2884899f2b692.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/58/ -rw-r--r-- root/root 25712 2026-11-03 10:17 ./usr/lib/debug/.build-id/58/a70840517d85ee714eceedae16a5ce99540e7e.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/7b/ -rw-r--r-- root/root 841160 2026-11-03 10:17 ./usr/lib/debug/.build-id/7b/b367b90e0ae40571149e5ce398f782147c18bb.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/89/ -rw-r--r-- root/root 523448 2026-11-03 10:17 ./usr/lib/debug/.build-id/89/9a2d885601e078b0209c4ff12c53885587259b.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/d3/ -rw-r--r-- root/root 537840 2026-11-03 10:17 ./usr/lib/debug/.build-id/d3/c866ddbc3acb7f916be8b0fb46b3f23b731db6.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debug/.build-id/e3/ -rw-r--r-- root/root 489952 2026-11-03 10:17 ./usr/lib/debug/.build-id/e3/b2e94b354953311b39ccfeaa7e093bf1d2affa.debug drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/share/doc/paml-dbgsym -> paml paml_4.10.10+dfsg-1_riscv64.deb ------------------------------- new Debian package, version 2.0. size 689196 bytes: control archive=2464 bytes. 760 bytes, 16 lines control 4269 bytes, 66 lines md5sums Package: paml Version: 4.10.10+dfsg-1 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 2261 Depends: libc6 (>= 2.38) Section: science Priority: optional Homepage: https://github.com/abacus-gene/paml Description: Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. Commands: baseml, basemlg, chi2, codeml, mcmctree, paml-evolver, pamp, yn00 drwxr-xr-x root/root 0 2026-11-03 10:17 ./ drwxr-xr-x root/root 0 2026-11-03 10:17 ./etc/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./etc/paml/ lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/aaml.ctl -> /usr/lib/paml/data/aaml.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/baseml.ctl -> /usr/lib/paml/data/baseml.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/codeml.ctl -> /usr/lib/paml/data/codeml.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/codonml.ctl -> /usr/lib/paml/data/codonml.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/mcmctree.ctl -> /usr/lib/paml/data/mcmctree.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/pamp.ctl -> /usr/lib/paml/data/pamp.ctl lrwxrwxrwx root/root 0 2026-11-03 10:17 ./etc/paml/yn00.ctl -> /usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/bin/ lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/baseml -> ../lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/basemlg -> ../lib/debian-med/bin/basemlg lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/chi2 -> ../lib/debian-med/bin/chi2 lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/codeml -> ../lib/debian-med/bin/codeml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/mcmctree -> ../lib/debian-med/bin/mcmctree lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/paml-evolver -> ../lib/debian-med/bin/evolver lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/pamp -> ../lib/debian-med/bin/pamp lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/bin/yn00 -> ../lib/debian-med/bin/yn00 drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 190 2026-11-03 10:17 ./usr/lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/basemlg -> baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/chi2 -> ../../paml/bin/chi2 lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/codeml -> baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/evolver -> ../../paml/bin/evolver lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/mcmctree -> baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/pamp -> baseml lrwxrwxrwx root/root 0 2026-11-03 10:17 ./usr/lib/debian-med/bin/yn00 -> baseml drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/paml/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/paml/bin/ -rwxr-xr-x root/root 354728 2026-11-03 10:17 ./usr/lib/paml/bin/baseml -rwxr-xr-x root/root 223056 2026-11-03 10:17 ./usr/lib/paml/bin/basemlg -rwxr-xr-x root/root 14512 2026-11-03 10:17 ./usr/lib/paml/bin/chi2 -rwxr-xr-x root/root 486992 2026-11-03 10:17 ./usr/lib/paml/bin/codeml -rwxr-xr-x root/root 210584 2026-11-03 10:17 ./usr/lib/paml/bin/evolver -rwxr-xr-x root/root 292848 2026-11-03 10:17 ./usr/lib/paml/bin/mcmctree -rwxr-xr-x root/root 218608 2026-11-03 10:17 ./usr/lib/paml/bin/pamp -rwxr-xr-x root/root 202256 2026-11-03 10:17 ./usr/lib/paml/bin/yn00 drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/lib/paml/data/ -rw-r--r-- root/root 50 2026-01-29 17:04 ./usr/lib/paml/data/3s.trees -rw-r--r-- root/root 86 2026-01-29 17:04 ./usr/lib/paml/data/4s.trees -rw-r--r-- root/root 285 2026-01-29 17:04 ./usr/lib/paml/data/5s.trees -rw-r--r-- root/root 118 2026-01-29 17:04 ./usr/lib/paml/data/6s.trees -rw-r--r-- root/root 147 2026-01-29 17:04 ./usr/lib/paml/data/9s.trees -rw-r--r-- root/root 1372 2026-01-29 17:04 ./usr/lib/paml/data/MCaa.dat -rw-r--r-- root/root 1744 2026-01-29 17:04 ./usr/lib/paml/data/MCbase.dat -rw-r--r-- root/root 1988 2026-01-29 17:04 ./usr/lib/paml/data/MCbaseRandomTree.dat -rw-r--r-- root/root 4174 2026-01-29 17:04 ./usr/lib/paml/data/MCcodon.dat -rw-r--r-- root/root 457 2026-11-03 10:17 ./usr/lib/paml/data/aaml.ctl -rw-r--r-- root/root 1675 2026-01-29 17:04 ./usr/lib/paml/data/abglobin.aa -rw-r--r-- root/root 6088 2026-01-29 17:04 ./usr/lib/paml/data/abglobin.nuc -rw-r--r-- root/root 330 2026-01-29 17:04 ./usr/lib/paml/data/abglobin.trees -rw-r--r-- root/root 1760 2026-11-03 10:17 ./usr/lib/paml/data/baseml.ctl -rw-r--r-- root/root 5720 2026-01-29 17:04 ./usr/lib/paml/data/brown.nuc -rw-r--r-- root/root 268 2026-01-29 17:04 ./usr/lib/paml/data/brown.rooted.trees -rw-r--r-- root/root 94 2026-01-29 17:04 ./usr/lib/paml/data/brown.trees -rw-r--r-- root/root 2925 2026-11-03 10:17 ./usr/lib/paml/data/codeml.ctl -rw-r--r-- root/root 608 2026-11-03 10:17 ./usr/lib/paml/data/codonml.ctl -rw-r--r-- root/root 5697 2026-01-29 17:04 ./usr/lib/paml/data/dNdSGene1.nuc drwxr-xr-x root/root 0 2026-01-29 17:04 ./usr/lib/paml/data/dat/ -rw-r--r-- root/root 1823 2026-01-29 17:04 ./usr/lib/paml/data/dat/MtZoa.dat -rw-r--r-- root/root 9944 2026-01-29 17:04 ./usr/lib/paml/data/dat/cpREV10.dat -rw-r--r-- root/root 1846 2026-01-29 17:04 ./usr/lib/paml/data/dat/cpREV64.dat -rw-r--r-- root/root 2921 2026-01-29 17:04 ./usr/lib/paml/data/dat/dayhoff-dcmut.dat -rw-r--r-- root/root 5152 2026-01-29 17:04 ./usr/lib/paml/data/dat/dayhoff.dat -rw-r--r-- root/root 1507 2026-01-29 17:04 ./usr/lib/paml/data/dat/g1974a.dat -rw-r--r-- root/root 1344 2026-01-29 17:04 ./usr/lib/paml/data/dat/g1974c.dat -rw-r--r-- root/root 1102 2026-01-29 17:04 ./usr/lib/paml/data/dat/g1974p.dat -rw-r--r-- root/root 1331 2026-01-29 17:04 ./usr/lib/paml/data/dat/g1974v.dat -rw-r--r-- root/root 1632 2026-01-29 17:04 ./usr/lib/paml/data/dat/grantham.dat -rw-r--r-- root/root 2910 2026-01-29 17:04 ./usr/lib/paml/data/dat/jones-dcmut.dat -rw-r--r-- root/root 11978 2026-01-29 17:04 ./usr/lib/paml/data/dat/jones.dat -rw-r--r-- root/root 2674 2026-01-29 17:04 ./usr/lib/paml/data/dat/lg.dat -rw-r--r-- root/root 1230 2026-01-29 17:04 ./usr/lib/paml/data/dat/miyata.dat -rw-r--r-- root/root 4772 2026-01-29 17:04 ./usr/lib/paml/data/dat/mtArt.dat -rw-r--r-- root/root 2329 2026-01-29 17:04 ./usr/lib/paml/data/dat/mtREV24.dat -rw-r--r-- root/root 3766 2026-01-29 17:04 ./usr/lib/paml/data/dat/mtmam.dat -rw-r--r-- root/root 3287 2026-01-29 17:04 ./usr/lib/paml/data/dat/wag.dat -rw-r--r-- root/root 40569 2026-01-29 17:04 ./usr/lib/paml/data/horai.nuc -rw-r--r-- root/root 62 2026-01-29 17:04 ./usr/lib/paml/data/horai.trees -rw-r--r-- root/root 4060 2026-01-29 17:04 ./usr/lib/paml/data/lysozymeSmall.nuc -rw-r--r-- root/root 734 2026-01-29 17:04 ./usr/lib/paml/data/lysozymeSmall.trees -rw-r--r-- root/root 1268 2026-11-03 10:17 ./usr/lib/paml/data/mcmctree.ctl -rw-r--r-- root/root 328 2026-01-29 17:04 ./usr/lib/paml/data/mtCDNApri.trees -rw-r--r-- root/root 70440 2026-01-29 17:04 ./usr/lib/paml/data/mtCDNApri123.txt -rw-r--r-- root/root 11521 2026-01-29 17:04 ./usr/lib/paml/data/mtprim9.nuc -rw-r--r-- root/root 366 2026-11-03 10:17 ./usr/lib/paml/data/pamp.ctl -rw-r--r-- root/root 997 2026-01-29 17:04 ./usr/lib/paml/data/stewart.aa -rw-r--r-- root/root 138 2026-01-29 17:04 ./usr/lib/paml/data/stewart.trees -rw-r--r-- root/root 703 2026-11-03 10:17 ./usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/doc/paml/ -rw-r--r-- root/root 898 2026-11-03 10:17 ./usr/share/doc/paml/README.Debian -rw-r--r-- root/root 4367 2026-01-29 17:04 ./usr/share/doc/paml/README.md.gz -rw-r--r-- root/root 278 2026-11-03 10:17 ./usr/share/doc/paml/README.test -rw-r--r-- root/root 821 2026-11-03 10:17 ./usr/share/doc/paml/changelog.Debian.gz -rw-r--r-- root/root 791 2026-11-03 10:17 ./usr/share/doc/paml/copyright drwxr-xr-x root/root 0 2026-11-03 10:17 ./usr/share/doc/paml/profile.d/ -rw-r--r-- root/root 147 2026-11-03 10:17 ./usr/share/doc/paml/profile.d/paml -rw-r--r-- root/root 1665 2026-11-03 10:17 ./usr/share/doc/paml/run-unit-test lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-9Rfvce/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ Sources [1303 B] Get:5 copy:/build/reproducible-path/resolver-9Rfvce/apt_archive ./ Packages [1386 B] Fetched 3304 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: sbuild-build-depends-lintian-dummy:riscv64 : Depends: lintian:amd64 Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:riscv64 : Depends: lintian:amd64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build Wed, 11 Nov 2026 22:43:06 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 11 Nov 2026 22:43:06 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 11 Nov 2026 22:43:07 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 78 Distribution: unstable Foreign Architectures: riscv64 Host Architecture: riscv64 Install-Time: 14 Job: paml_4.10.10+dfsg-1 Lintian: error Machine Architecture: amd64 Package: paml Package-Time: 104 Source-Version: 4.10.10+dfsg-1 Space: n/a Status: successful Version: 4.10.10+dfsg-1 -------------------------------------------------------------------------------- Finished at 2026-11-11T22:42:59Z Build needed 00:01:44, no disk space