sbuild (Debian sbuild) 0.81.2 (31 January 2021) on debian-ci-siliconvalley +==============================================================================+ | parsinsert 1.04-11 (arm64) Sun, 24 Jul 2022 08:52:17 +0000 | +==============================================================================+ Package: parsinsert Version: 1.04-11 Source Version: 1.04-11 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-99cc05ab-f458-4a41-b0a2-ffb0fe68a371' with '<>' I: NOTICE: Log filtering will replace 'build/parsinsert-3meXh1/resolver-zcirKF' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [192 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-07-24-0210.16-F-2022-07-23-2023.24.pdiff [36.4 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-07-24-0210.16-F-2022-07-23-2023.24.pdiff [165 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-07-24-0210.16-F-2022-07-23-2023.24.pdiff [36.4 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9133 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-07-24-0210.16-F-2022-07-23-2023.24.pdiff [165 kB] Fetched 9654 kB in 2s (4052 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libcap-ng0 libseccomp2 libselinux1 libsemanage2 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 262 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 libcap-ng0 amd64 0.8.3-1+b1 [19.2 kB] Get:2 http://localhost:3142/debian sid/main amd64 libseccomp2 amd64 2.5.4-1+b1 [48.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 libselinux1 amd64 3.4-1+b1 [92.6 kB] Get:4 http://localhost:3142/debian sid/main amd64 libsemanage2 amd64 3.4-1+b1 [101 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 262 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13619 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-1+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.3-1+b1) over (0.8.3-1) ... Setting up libcap-ng0:amd64 (0.8.3-1+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13621 files and directories currently installed.) Preparing to unpack .../libselinux1_3.4-1+b1_amd64.deb ... Unpacking libselinux1:amd64 (3.4-1+b1) over (3.4-1) ... Setting up libselinux1:amd64 (3.4-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13622 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1+b1_amd64.deb ... Unpacking libsemanage2:amd64 (3.4-1+b1) over (3.4-1) ... Setting up libsemanage2:amd64 (3.4-1+b1) ... Processing triggers for libc-bin (2.33-8) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'parsinsert' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/parsinsert.git Please use: git clone https://salsa.debian.org/med-team/parsinsert.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2884 kB of source archives. Get:1 http://localhost:3142/debian sid/main parsinsert 1.04-11 (dsc) [2099 B] Get:2 http://localhost:3142/debian sid/main parsinsert 1.04-11 (tar) [53.7 kB] Get:3 http://localhost:3142/debian sid/main parsinsert 1.04-11 (diff) [2828 kB] Fetched 2884 kB in 0s (147 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/parsinsert-3meXh1/parsinsert-1.04' with '<>' I: NOTICE: Log filtering will replace 'build/parsinsert-3meXh1' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [403 B] Get:5 copy:/<>/apt_archive ./ Packages [493 B] Fetched 1853 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-12-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-12-aarch64-linux-gnu gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:arm64 libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu71 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libsigsegv2 libssl3:arm64 libstdc++-12-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 krb5-doc:arm64 krb5-user:arm64 libstdc++-12-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl krb5-locales:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-12-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-12-aarch64-linux-gnu gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:arm64 libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu71 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libsigsegv2 libssl3:arm64 libstdc++-12-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 244 MB of archives. After this operation, 915 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-6 [175 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38-5 [144 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-1 [38.6 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.10.2-1 [1411 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:14 http://localhost:3142/debian sid/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:15 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:16 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:17 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:18 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:19 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-6 [510 kB] Get:20 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.38.90.20220713-2 [7237 kB] Get:21 http://localhost:3142/debian sid/main amd64 gcc-12-aarch64-linux-gnu-base amd64 12.1.0-7cross1 [208 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-12-aarch64-linux-gnu amd64 12.1.0-7cross1 [56.4 MB] Get:23 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:12.1.0-3 [17.1 kB] Get:24 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:25 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.1.0-7cross1 [203 kB] Get:26 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.33-1cross1 [1243 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 12.1.0-7cross1 [35.1 kB] Get:28 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 12.1.0-7cross1 [102 kB] Get:29 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 12.1.0-7cross1 [23.4 kB] Get:30 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 12.1.0-7cross1 [9284 B] Get:31 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 12.1.0-7cross1 [2097 kB] Get:32 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 12.1.0-7cross1 [925 kB] Get:33 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 12.1.0-7cross1 [2180 kB] Get:34 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 12.1.0-7cross1 [514 kB] Get:35 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 12.1.0-7cross1 [860 kB] Get:36 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 12.1.0-7cross1 [997 kB] Get:37 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-arm64-cross all 12.1.0-7cross1 [958 kB] Get:38 http://localhost:3142/debian sid/main amd64 gcc-12-aarch64-linux-gnu amd64 12.1.0-7cross1 [63.9 MB] Get:39 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:12.1.0-3 [1456 B] Get:40 http://localhost:3142/debian sid/main amd64 linux-libc-dev-arm64-cross all 5.15.5-1cross1 [1554 kB] Get:41 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.33-1cross1 [1938 kB] Get:42 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-arm64-cross all 12.1.0-7cross1 [1972 kB] Get:43 http://localhost:3142/debian sid/main amd64 g++-12-aarch64-linux-gnu amd64 12.1.0-7cross1 [60.8 MB] Get:44 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:12.1.0-3 [1176 B] Get:45 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:46 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:47 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:51 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:52 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:53 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:54 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:55 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:56 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-1 [17.3 kB] Get:57 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:58 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:59 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:60 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B] Get:61 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.8 [195 kB] Get:62 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:63 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:64 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:65 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-3 [10.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:67 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:68 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-1 [179 kB] Get:69 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:70 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-6 [1310 kB] Get:71 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:72 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:73 http://localhost:3142/debian sid/main amd64 debhelper all 13.8 [1070 kB] Get:74 http://localhost:3142/debian sid/main arm64 gcc-12-base arm64 12.1.0-7 [207 kB] Get:75 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 12.1.0-7 [35.1 kB] Get:76 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.33-8 [2529 kB] Get:77 http://localhost:3142/debian sid/main arm64 libasan8 arm64 12.1.0-7 [2095 kB] Get:78 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 12.1.0-7 [9532 B] Get:79 http://localhost:3142/debian sid/main arm64 linux-libc-dev arm64 5.18.5-1 [1573 kB] Get:80 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.28-2 [90.8 kB] Get:81 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.28-2 [122 kB] Get:82 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.46.5-2 [75.5 kB] Get:83 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20-1 [65.0 kB] Get:84 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20-1 [113 kB] Get:85 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-1 [15.7 kB] Get:86 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.0.4-2 [1826 kB] Get:87 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20-1 [346 kB] Get:88 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20-1 [157 kB] Get:89 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.2-2 [80.4 kB] Get:90 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:91 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.2-2 [193 kB] Get:92 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:93 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.33-8 [1942 kB] Get:94 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 12.1.0-7 [104 kB] Get:95 http://localhost:3142/debian sid/main arm64 libitm1 arm64 12.1.0-7 [23.9 kB] Get:96 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 12.1.0-7 [926 kB] Get:97 http://localhost:3142/debian sid/main arm64 libtsan2 arm64 12.1.0-7 [2180 kB] Get:98 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 12.1.0-7 [557 kB] Get:99 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 12.1.0-7 [861 kB] Get:100 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 12.1.0-7 [999 kB] Get:101 http://localhost:3142/debian sid/main arm64 libgcc-12-dev arm64 12.1.0-7 [961 kB] Get:102 http://localhost:3142/debian sid/main arm64 libstdc++-12-dev arm64 12.1.0-7 [2006 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 244 MB in 1s (203 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 13623 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-6_amd64.deb ... Unpacking gettext-base (0.21-6) ... 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Setting up libfile-which-perl (1.27-1) ... Setting up gcc-12-cross-base (12.1.0-7cross1) ... Setting up bsdextrautils (2.38-5) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up gcc-12-aarch64-linux-gnu-base:amd64 (12.1.0-7cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.8) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up linux-libc-dev:arm64 (5.18.5-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-6) ... Setting up binutils-aarch64-linux-gnu (2.38.90.20220713-2) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-1) ... Setting up gcc-12-base:arm64 (12.1.0-7) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libsigsegv2:amd64 (2.14-1) ... Setting up libc6-arm64-cross (2.33-1cross1) ... Setting up autopoint (0.21-6) ... Setting up libitm1-arm64-cross (12.1.0-7cross1) ... Setting up linux-libc-dev-arm64-cross (5.15.5-1cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:amd64 (0.187-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libgcc-s1-arm64-cross (12.1.0-7cross1) ... Setting up libatomic1-arm64-cross (12.1.0-7cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up liblsan0-arm64-cross (12.1.0-7cross1) ... Setting up libgomp1-arm64-cross (12.1.0-7cross1) ... Setting up gettext (0.21-6) ... Setting up cpp-12-aarch64-linux-gnu (12.1.0-7cross1) ... Setting up libtool (2.4.7-4) ... Setting up m4 (1.4.18-5) ... Setting up libhwasan0-arm64-cross (12.1.0-7cross1) ... Setting up libc6-dev-arm64-cross (2.33-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++6-arm64-cross (12.1.0-7cross1) ... Setting up cpp-aarch64-linux-gnu (4:12.1.0-3) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up libasan8-arm64-cross (12.1.0-7cross1) ... Setting up libtsan2-arm64-cross (12.1.0-7cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libubsan1-arm64-cross (12.1.0-7cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-12-dev-arm64-cross (12.1.0-7cross1) ... Setting up dh-autoreconf (20) ... Setting up gcc-12-aarch64-linux-gnu (12.1.0-7cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-aarch64-linux-gnu (4:12.1.0-3) ... Setting up debhelper (13.8) ... Setting up libstdc++-12-dev-arm64-cross (12.1.0-7cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-12-aarch64-linux-gnu (12.1.0-7cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:12.1.0-3) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-arm64 (12.9) ... Setting up libgcc-s1:arm64 (12.1.0-7) ... Setting up libc6:arm64 (2.33-8) ... Setting up libhwasan0:arm64 (12.1.0-7) ... Setting up libasan8:arm64 (12.1.0-7) ... Setting up libtsan2:arm64 (12.1.0-7) ... Setting up libstdc++6:arm64 (12.1.0-7) ... Setting up liblsan0:arm64 (12.1.0-7) ... Setting up libitm1:arm64 (12.1.0-7) ... Setting up libkeyutils1:arm64 (1.6.3-1) ... Setting up libssl3:arm64 (3.0.4-2) ... Setting up libcrypt1:arm64 (1:4.4.28-2) ... Setting up libcom-err2:arm64 (1.46.5-2) ... Setting up libgomp1:arm64 (12.1.0-7) ... Setting up libkrb5support0:arm64 (1.20-1) ... Setting up libatomic1:arm64 (12.1.0-7) ... Setting up libk5crypto3:arm64 (1.20-1) ... Setting up libubsan1:arm64 (12.1.0-7) ... Setting up libcrypt-dev:arm64 (1:4.4.28-2) ... Setting up libkrb5-3:arm64 (1.20-1) ... Setting up libgcc-12-dev:arm64 (12.1.0-7) ... Setting up libgssapi-krb5-2:arm64 (1.20-1) ... Setting up libtirpc3:arm64 (1.3.2-2) ... Setting up libtirpc-dev:arm64 (1.3.2-2) ... Setting up libnsl2:arm64 (1.3.0-2) ... Setting up libnsl-dev:arm64 (1.3.0-2) ... Setting up libc6-dev:arm64 (2.33-8) ... Setting up libstdc++-12-dev:arm64 (12.1.0-7) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.33-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-15-amd64 #1 SMP Debian 5.10.120-1 (2022-06-09) amd64 (x86_64) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-11_11.3.0-5 g++-12_12.1.0-7 gcc-11_11.3.0-5 gcc-12_12.1.0-7 libc6-dev_2.33-8 libstdc++-11-dev_11.3.0-5 libstdc++-12-dev_12.1.0-7 libstdc++-12-dev-arm64-cross_12.1.0-7cross1 libstdc++6_12.1.0-7 libstdc++6-arm64-cross_12.1.0-7cross1 linux-libc-dev_5.18.5-1 Package versions: adduser_3.123 apt_2.5.1 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6.1 binutils_2.38.90.20220713-2 binutils-aarch64-linux-gnu_2.38.90.20220713-2 binutils-common_2.38.90.20220713-2 binutils-x86-64-linux-gnu_2.38.90.20220713-2 bsdextrautils_2.38-5 bsdutils_1:2.38-5 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:12.1.0-3 cpp-11_11.3.0-5 cpp-12_12.1.0-7 cpp-12-aarch64-linux-gnu_12.1.0-7cross1 cpp-aarch64-linux-gnu_4:12.1.0-3 cross-config_2.6.18+nmu2 crossbuild-essential-arm64_12.9 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.8 debian-archive-keyring_2021.1.1 debianutils_5.7-0.2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.1.0-3 g++-11_11.3.0-5 g++-12_12.1.0-7 g++-12-aarch64-linux-gnu_12.1.0-7cross1 g++-aarch64-linux-gnu_4:12.1.0-3 gcc_4:12.1.0-3 gcc-11_11.3.0-5 gcc-11-base_11.3.0-5 gcc-12_12.1.0-7 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tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 util-linux_2.38-5 util-linux-extra_2.38-5 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: parsinsert Binary: parsinsert, parsinsert-testdata Architecture: any all Version: 1.04-11 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: http://sourceforge.net/projects/parsinsert/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/parsinsert Vcs-Git: https://salsa.debian.org/med-team/parsinsert.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: parsinsert deb science optional arch=any parsinsert-testdata deb science optional arch=all Checksums-Sha1: 197c6f3f87c96d7c2104db3c530b0e0bc04a70f4 53700 parsinsert_1.04.orig.tar.gz 9132a163f800fa241d2ff45775f87b89fbc1eb49 2827792 parsinsert_1.04-11.debian.tar.xz Checksums-Sha256: 06977f23a08b1a0a6657f5c4c5c6a1bb699ab28335ff06c081f9ecf82e8f84c0 53700 parsinsert_1.04.orig.tar.gz c38a7c115e7d0997364ce84fa6ffe798e9cb5e0131232a45ca3c7be0d78c7696 2827792 parsinsert_1.04-11.debian.tar.xz Files: 3e4997e279325e13860996758c2aed7e 53700 parsinsert_1.04.orig.tar.gz e2ff4028ac07f7c12f87d353b4df8708 2827792 parsinsert_1.04-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmLXqcgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHAHA//WDvT/KUIjZCfxXZqjrX3kT4kT5PNBc5u HpJb02Jhv77whSbUNyPO9Cc43Fk/EbJCXdiAgs+/s94bnltnaM3hOVrZU7z4d/A7 o7MG40QbibBouGdvOPgT3vw9M4Vd8cZJLv5icxAdRgfaWE2gNgUgwneyyMm4M2Ip J3YbEuLQetObgvAc9xQy3TuRTm9Hg44OBkpH6yGBNG9hYavuIx9VUw2AvsJQcIVx z2eBNQjWqkbXwvM6budFo8/QwqN+QzcDrEoHojjQ1SfKJuCJUM52eTCUn6fiMO2S l2s/K2qw0upwcLsQaN7loWoYiJUMID7jPNiY7c7hYtu3O1gZdhst8NqU6/1k7zh0 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dpkg-source: info: applying 010_fix-gcc6.patch dpkg-source: info: applying 020_hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-99cc05ab-f458-4a41-b0a2-ffb0fe68a371 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package parsinsert dpkg-buildpackage: info: source version 1.04-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' mv parsinsert ParsInsert || true mv: cannot stat 'parsinsert': No such file or directory dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f ParsInsert AttrList.o Knox_Stddef.o PNode.o SeqList.o Taxonomy.o ParsInsert.o *.fasta *.log *.results *.tree make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc make[2]: Entering directory '/<>' aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o AttrList.o AttrList.cpp AttrList.cpp: In member function ‘int CAttrList::AddHex(const char*, long unsigned int)’: AttrList.cpp:173:28: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 173 | sprintf(buf, "0x%08X", value); | ~~~^ ~~~~~ | | | | | long unsigned int | unsigned int | %08lX aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Knox_Stddef.o Knox_Stddef.cpp aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o PNode.o PNode.cpp In file included from PNode.h:31, from PNode.cpp:27: ParsimonySet.h: In member function ‘void CParsimonySet::TraceSegments(const char*)’: ParsimonySet.h:429:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 429 | DisplayL("%s [", label); | ^~~~~~ ParsimonySet.h:431:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 431 | DisplayL(" %3d", segCounts[k]); | ^~~~~~ ParsimonySet.h:432:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 432 | DisplayL("]\n"); | ^~~~~ PNode.cpp: In member function ‘void CPTree::Parse(const char*)’: PNode.cpp:299:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 299 | DisplayL("Could not process all the chars in NEWICK file\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PNode.cpp:304:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 304 | DisplayL("Processed %d chars of %d\n", nProcess, totalProcess); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SeqList.o SeqList.cpp In file included from PNode.h:31, from SeqList.cpp:27: ParsimonySet.h: In member function ‘void CParsimonySet::TraceSegments(const char*)’: ParsimonySet.h:429:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 429 | DisplayL("%s [", label); | ^~~~~~ ParsimonySet.h:431:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 431 | DisplayL(" %3d", segCounts[k]); | ^~~~~~ ParsimonySet.h:432:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 432 | DisplayL("]\n"); | ^~~~~ SeqList.cpp: In member function ‘int CSequenceFile::ReadSequenceIndexFile(const char*)’: SeqList.cpp:490:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 490 | DisplayT("Loading sequence %d [%s]\n", count, name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:492:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 492 | DisplayT("Loading sequence %d\n", count); | ^~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:496:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 496 | DisplayT("Loaded %d sequences from [%s]\n", count, filename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp: In member function ‘int CSequenceFile::ReadTaxonomyFile()’: SeqList.cpp:529:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 529 | DisplayT("Loading sequence %d [%s]\n", seqCount, seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:531:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 531 | DisplayT("Loading sequence %d\n", seqCount); | ^~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp: In member function ‘int CSequenceFile::ReadSequenceFile(int)’: SeqList.cpp:565:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 565 | DisplayT("Loading sequence %d [%s]\n", seqCount, seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:580:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 580 | DisplayL("Duplicate sequence found [%s]\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp:605:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 605 | DisplayT("Loading sequence %d [%s]\n", seqCount, seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp: In member function ‘const char* CSequenceItem::ReadSeqHeader(FILE*)’: SeqList.cpp:202:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fgets(buffer, sizeof(buffer)-1, f); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp: In member function ‘const char* CSequenceItem::ReadSeqData(FILE*)’: SeqList.cpp:229:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 229 | fgets(buffer, sizeof(buffer)-1, f); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Taxonomy.o Taxonomy.cpp Taxonomy.cpp: In member function ‘int CTaxEntry::Display(const char*, int)’: Taxonomy.cpp:96:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 96 | DisplayL("%s[%s] %d\n", leader, name.c_str(), count); | ^~~~~~~~~~~~~ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ParsInsert.o ParsInsert.cpp ParsInsert.cpp:411:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 411 | DisplayL("%s\nCommand Line:[%s]\n", VERSION, cmd.c_str()); | ^~~~~~~ ParsInsert.cpp:56:82: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | #define VERSION APPNAME " Version 1.04 " __DATE__ " " __TIME__ | ^~~~~~~~ ParsInsert.cpp:411:45: note: in expansion of macro ‘VERSION’ 411 | DisplayL("%s\nCommand Line:[%s]\n", VERSION, cmd.c_str()); | ^~~~~~~ ParsInsert.cpp:416:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 416 | DisplayT(USAGE, VERSION, APPNAME); | ^~~~~~~ ParsInsert.cpp:56:82: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | #define VERSION APPNAME " Version 1.04 " __DATE__ " " __TIME__ | ^~~~~~~~ ParsInsert.cpp:416:25: note: in expansion of macro ‘VERSION’ 416 | DisplayT(USAGE, VERSION, APPNAME); | ^~~~~~~ In file included from ParsInsert.h:29, from ParsInsert.cpp:34: ParsimonySet.h: In member function ‘void CParsimonySet::TraceSegments(const char*)’: ParsimonySet.h:429:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 429 | DisplayL("%s [", label); | ^~~~~~ ParsimonySet.h:431:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 431 | DisplayL(" %3d", segCounts[k]); | ^~~~~~ ParsimonySet.h:432:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 432 | DisplayL("]\n"); | ^~~~~ ParsInsert.cpp: At global scope: ParsInsert.cpp:92:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 92 | char *statsName = "PI_Results.log"; | ^~~~~~~~~~~~~~~~ ParsInsert.cpp:93:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 93 | char *logFilename = "ParsInsert.log"; | ^~~~~~~~~~~~~~~~ ParsInsert.cpp:94:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 94 | char *treeFilename = "PI_Tree.tree"; | ^~~~~~~~~~~~~~ ParsInsert.cpp:95:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 95 | char *seqFilename = "PI_Tree.fasta"; | ^~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int main(int, char**)’: ParsInsert.cpp:247:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 247 | DisplayL("%s\n", COPYRIGHT); | ^~~~~~ ParsInsert.cpp:288:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 288 | DisplayL("Setting Tree Floating Point Precision to %d\n", v); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:388:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 388 | DisplayL("invalid command option '%c'\n", argv[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:411:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 411 | DisplayL("%s\nCommand Line:[%s]\n", VERSION, cmd.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:415:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 415 | DisplayL("ERROR - missing files to process\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:63:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 63 | #define USAGE "Application:%s\n\n%s [options] \n" \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 | " Parsimonious Insertion of Sequences into Given Tree \n\n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | " -m - read mask from this file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | " -s - read core tree sequences from this file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | " (default: PI_Tree.fasta) \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | " -t - read core tree from this file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | " (default: PI_Tree.tree) \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | " -x - read core tree taxomony from this file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | " -o - output taxonomy for each insert sequence to this file\n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | " (default: PI_Results.log) \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | " -l[-|] - create log file (default is ParsInsert.log)\n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | " -n# - number of best matches to display \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 | " -c# - percent threshold cutoff \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 | " -p - print node comments in newick file \n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 | " -D# - print branch lengths using # decimal places\n" \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 | "\n" | ~~~~ ParsInsert.cpp:63:17: note: in definition of macro ‘USAGE’ 63 | #define USAGE "Application:%s\n\n%s [options] \n" \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:420:17: error: ‘time’ was not declared in this scope 420 | start = time(NULL); | ^~~~ ParsInsert.cpp:46:1: note: ‘time’ is defined in header ‘’; did you forget to ‘#include ’? 45 | #include +++ |+#include 46 | ParsInsert.cpp:424:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 424 | DisplayL(" tree file: %s\n", treeFilename); | ^~~~~~~~~~~~~~~~~~ ParsInsert.cpp:429:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 429 | DisplayL(" tree sequence file: %s\n", seqFilename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:434:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 434 | DisplayL(" mask file: %s\n", maskName); | ^~~~~~~~~~~~~~~~~~ ParsInsert.cpp:438:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 438 | DisplayT("Cannot open mask file [%s]", maskName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:447:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 447 | DisplayL(" taxomony index file: %s\n", taxName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:451:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 451 | DisplayT("Cannot open taxomony index FASTA file [%s]", taxName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:455:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 455 | DisplayL(" taxomony index file: %d taxa\n", taxonomy->GetCount()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int ParsimonyInsertion()’: ParsInsert.cpp:532:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 532 | DisplayL("Reading Newick Tree: [%s]\n", treeFilename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:533:13: error: ‘time’ was not declared in this scope 533 | stage = time(NULL); | ^~~~ ParsInsert.cpp:533:13: note: ‘time’ is defined in header ‘’; did you forget to ‘#include ’? ParsInsert.cpp:537:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 537 | DisplayL("Error accessing Newick Tree file [%s]\n", treeFilename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:552:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 552 | DisplayL("Found duplicate name: [%s]/n", name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:558:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 558 | DisplayL("Tree Sequence Reading: [%s]\n", seqFilename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:567:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 567 | DisplayL("Reading sequences for insertion: [%s]\n", files[0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:573:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 573 | DisplayL("No insertion sequences found\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:579:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 579 | DisplayL("Checking Taxa Taxonomy\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:581:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 581 | DisplayL("Setting Internal Taxonomy\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:587:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 587 | DisplayL("Setting internal parsimony sequences ...\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:641:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 641 | DisplayL("Writing Newick tree file: [%s]\n", treename.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:647:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 647 | DisplayL("CalcCost calls[%d] = %d / %d (%d)\n", useCalcCost, nCalcCostFull, nCalcCost,nCalcCost-nCalcCostFull); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:649:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 649 | DisplayL("Insert Time = %d, %d per hour\n", insertTime, 3600 * inserts.size() / insertTime ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int CheckTreeSequences(CPTree*, CSequenceFile*)’: ParsInsert.cpp:674:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 674 | DisplayL("Error accessing Tree Sequencefile [%s]\n", treeSeqfile->fname.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:693:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 693 | DisplayL("ERROR - tree member sequence is not available [%s]\n", name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int CreateParsimonySets(const char*, CPTree*)’: ParsInsert.cpp:711:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 711 | DisplayL(" parsimony index file: %s\n", parsName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:715:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 715 | DisplayT("Cannot open parsimony index FASTA file [%s]", parsName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:718:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 718 | DisplayL(" parsimony file: %d internal nodes\n", parsimony->GetCount()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:755:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 755 | DisplayL("Calculating internal parsimony sequences ...\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘CPTree* ReadNewickTree(const char*)’: ParsInsert.cpp:861:25: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 861 | Display("Could not open source file: [%s]\n", filename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:870:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 870 | DisplayT("Opening file: %s\t...", filename); | ^~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:897:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 897 | Display("Opening file: %s\tLines:%d", filename, linecount); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:902:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 902 | DisplayT("Parsing Newick file: %s\t...", filename); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int CheckLeafTaxonomy(CPTree*)’: ParsInsert.cpp:949:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 949 | DisplayL("%d of %d nodes are missing taxonomy\n\t", n, nodes.size()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:955:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 955 | DisplayL(" %-12.12s%s", node->title.c_str(), (++count%8 == 0 ? "\n\t" :"")); | ^~~~~~~~~~~~~ ParsInsert.cpp:957:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 957 | DisplayL("\n"); | ^~~~ ParsInsert.cpp: In function ‘int SetInternalTaxonomy(CPTree*)’: ParsInsert.cpp:1091:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1091 | DisplayT("\rSetting Internal Taxonomy %d nodes remaining ", nSeqRemaining); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1099:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1099 | DisplayT("\n"); | ^~~~ ParsInsert.cpp: In function ‘void FindInsertLocations_Serial(CSequenceFile*, CPTree*, CSequenceFile*, CInsertPosArray&)’: ParsInsert.cpp:1113:49: error: ‘time’ was not declared in this scope 1113 | time_t start = time(NULL); | ^~~~ ParsInsert.cpp:1113:49: note: ‘time’ is defined in header ‘’; did you forget to ‘#include ’? ParsInsert.cpp:1125:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1125 | DisplayL("**** Sequence is already in core tree: %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1132:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1132 | DisplayL("**** Cannot find sequence for %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1166:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1166 | DisplayL("Insert [%20s](len=%d) [%5d sites] (%d - %d) [%s]\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1224:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1224 | DisplayL("Insertion of %d sequences in [%d sec]\n", inserts.size(), finish-start+1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘void FindInsertLocations(CSequenceFile*, CPNode*, CSequenceItem*, CInsertPos*)’: ParsInsert.cpp:1244:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1244 | DisplayL("**** Error: could not generate Parsimony Set\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘void FindInsertLocations(CSequenceFile*, CPTree*, CSequenceFile*, CInsertPosArray&)’: ParsInsert.cpp:1312:49: error: ‘time’ was not declared in this scope 1312 | time_t start = time(NULL); | ^~~~ ParsInsert.cpp:1312:49: note: ‘time’ is defined in header ‘’; did you forget to ‘#include ’? ParsInsert.cpp:1324:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1324 | DisplayL("**** Sequence is already in core tree: %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1331:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1331 | DisplayL("**** Cannot find sequence for %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1343:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1343 | DisplayL("**** Cannot find sequence taxonomy for %s\n", seq->name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1374:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1374 | DisplayL("Insert [%20s](len=%d) [%5d sites] (%d - %d) [%s]", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1394:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1394 | DisplayL("Insertion of %d sequences in [%d sec]\n", inserts.size(), finish-start+1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘void BuildScoreMatrix()’: ParsInsert.cpp:1432:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1432 | DisplayL("BAD BAD COMPUTER"); | ^~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int CalcCost_NEW1(CParsimonySet&, CParsimonySet&, int&, int&, int&, int)’: ParsInsert.cpp:1443:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1443 | register LPCSTR m = mask; | ^ ParsInsert.cpp:1444:34: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1444 | register BYTE *p1 = next_pars.data; | ^~ ParsInsert.cpp:1445:34: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1445 | register BYTE *p2 = node_pars.data; | ^~ ParsInsert.cpp:1446:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1446 | register DWORD key; | ^~~ ParsInsert.cpp:1469:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1469 | register WORD value = scoreMatrix[key]; | ^~~~~ ParsInsert.cpp: In function ‘int CalcCost_ORIG(CParsimonySet&, CParsimonySet&, int&, int&, int&, int)’: ParsInsert.cpp:1550:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1550 | register LPCSTR m = mask; | ^ ParsInsert.cpp:1558:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1558 | register BYTE *p1 = next_pars.data; | ^~ ParsInsert.cpp:1559:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1559 | register BYTE *p2 = node_pars.data; | ^~ ParsInsert.cpp:1565:49: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1565 | register char s1 = *p1; | ^~ ParsInsert.cpp:1566:49: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1566 | register char s2 = *p2; | ^~ ParsInsert.cpp: In function ‘int CalcAncestorParsimony(CPTree*)’: ParsInsert.cpp:1640:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1640 | DisplayT("Calculating Parsimony ..."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1644:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1644 | DisplayT("*** Cannot calc parsimony, no sequence file loaded"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1649:49: error: ‘time’ was not declared in this scope 1649 | time_t start = time(NULL); | ^~~~ ParsInsert.cpp:1649:49: note: ‘time’ is defined in header ‘’; did you forget to ‘#include ’? ParsInsert.cpp:1658:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1658 | DisplayL("Applying parsimonious selections back down the tree.\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1660:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1660 | DisplayL("%d nodes were modified\n", changes); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1684:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1684 | DisplayT("\nProcessed %d nodes in %d seconds, %.0f nodes per sec\n", tree->nodeList.size(), delta, npersec); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int ForceNodeParsimony(CPNode*)’: ParsInsert.cpp:1709:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1709 | DisplayL("***** Child not found [%s]\n", node->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int CalcNodeParsimony(CPNode*)’: ParsInsert.cpp:1748:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1748 | DisplayL("***** Child not found [%s]\n", node->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1801:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1801 | DisplayT("\rCalcParsimony %d nodes remaining ", nSeqRemaining); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int WriteParsimonySet(CPNode*, CSequenceFile*)’: ParsInsert.cpp:1829:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1829 | DisplayT("\r %d nodes remaining to be written ", nSeqRemaining); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘void DisplayInsertLocations(CInsertPosArray&, int)’: ParsInsert.cpp:1880:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1880 | DisplayL("======================================================================\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1882:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1882 | DisplayL("\nInsertion of [%s][%5d sites] [%d matches] Taxonomy[%s]:\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1892:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1892 | DisplayL("\tNO MATCHES found\n"); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1939:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1939 | DisplayL("%c(%3d%%) %6d (%4d diffs, %4d partials, %4d indels) [%12s][%s]\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1975:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1975 | DisplayL("\nInsertion [%5d sites] [%20.20s] %6d (%4d diffs, %4d partials, %4d indels)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1989:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1989 | DisplayL("%12.12s\t Seq[%s]\n", marker.c_str(), tax.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1990:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1990 | DisplayL("%12.12s\t [%s]\n", "", diff.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1991:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1991 | DisplayL("%12.12s\t Best[%s]\n", "", taxBest.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:1993:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1993 | DisplayL("\tFirst[%s]\n", taxFirst.c_str()); | ^~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘void DisplayBestInsertLocations(CInsertPos*, int)’: ParsInsert.cpp:2010:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2010 | DisplayL("======================================================================\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2012:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2012 | DisplayL("\nInsertion of [%s][%5d sites] [%d matches] Taxonomy[%s]:\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2021:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2021 | DisplayL("\tNO MATCHES found\n"); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2069:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2069 | DisplayL("%c(%3d%%) %6d (%4d diffs, %4d partials, %4d indels) [%12s][%s]\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2104:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2104 | DisplayL("\nInsertion [%5d sites] [%20.20s] %6d (%4d diffs, %4d partials, %4d indels)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2118:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2118 | DisplayL("%12.12s\t Seq[%s]\n", marker.c_str(), tax.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2119:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2119 | DisplayL("%12.12s\t [%s]\n", "", diff.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2120:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2120 | DisplayL("%12.12s\t Best[%s]\n", "", taxBest.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2122:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2122 | DisplayL("\tFirst[%s]\n", taxFirst.c_str()); | ^~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘void DisplayRankCounts(const char*, int (*)[4])’: ParsInsert.cpp:2134:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2134 | DisplayL("\n%s\n _________Precision________ __________Recall__________\n", header); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2141:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2141 | DisplayL("\t%10.10s: %8d %8d (%6.2f%%) %8d %8d (%6.2f%%)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘void OutputInsertLocations(CInsertPosArray&, int)’: ParsInsert.cpp:2182:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2182 | DisplayL("======================================================================\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2183:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2183 | DisplayL("\nInsertion: [%20.20s] [%5d sites]\n", name.c_str(), inserts[i]->nSites); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2187:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2187 | DisplayL("\tNO MATCHES found\n"); | ^~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2231:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2231 | DisplayL("\t\t%5d [%5f] [%s][%s]\n", iterB->score, dist, iterB->node->title.c_str(), iterB->tax.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2261:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2261 | DisplayL("\t\t%5d [%3d%%] [%s][%s]\n", iterB->score, per, iterB->node->title.c_str(), iterB->tax.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2265:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2265 | DisplayL("%1d (%3d%%) %6d (%4d diffs, %4d partials, %4d indels) [%12s]%c[%s]\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2306:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2306 | DisplayL("\t %6d (%4d diffs, %4d partials, %4d indels) [%s] \n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2324:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2324 | DisplayL("%18s[%s]\n", leader.c_str(), taxVoteList[knox].c_str()); | ^~~~~~~~~~~~ ParsInsert.cpp:2331:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2331 | DisplayL("%18s[%s]\n", leader.c_str(), taxBest.c_str()); | ^~~~~~~~~~~~ ParsInsert.cpp:2353:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2353 | DisplayL("no assignment (%d%% < %d%%)", per, scoreThresh); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2363:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2363 | DisplayL(" Correct Taxonomy:[%s]\n", taxCorrect.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2407:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2407 | DisplayL("Taxonomies List:\n"); | ^~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int BuildInsertTree(CTreeInserts*, CPTree*)’: ParsInsert.cpp:2647:34: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2647 | DisplayL("[%s] at %d%% does not meet threshold (%d%%)\n", in->seq->name.c_str(), score, 100-scoreThresh); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int SetMyTaxonomy(CPNode*)’: ParsInsert.cpp:2804:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2804 | DisplayL("No Taxnomy for [%s][%s]\n", name.c_str(), child->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2810:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2810 | DisplayL("No Taxnomy for [%s][%s]\n", name.c_str(), child->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:2834:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 2834 | DisplayL("No Taxnomy for [%s][%s]\n", name.c_str(), node->title.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘double ComparePosition(const char*, CPNode*, CPTree*, CPTree*)’: ParsInsert.cpp:3011:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3011 | DisplayL("Could not find core position for [%s][%s]\n", core1.c_str(), core2.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘void ComparePositions(CInsertPosArray&, CPTree*, CPTree*)’: ParsInsert.cpp:3036:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3036 | DisplayL("======================================================================\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3037:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3037 | DisplayL("\nDistance to Insertion: [%20.20s] [%5d sites]\n", name.c_str(), inserts[i]->best.list.size()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3041:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3041 | DisplayL("\tNO MATCHES found for [%s]\n", name.c_str()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3054:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3054 | DisplayL("\tDistance error from [%20.20s] = %d\n", pname.c_str(), dist); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int FullTree_Initialization()’: ParsInsert.cpp:3069:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3069 | DisplayL("Reading Newick Tree: [%s]\n", fullTreeName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3073:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3073 | DisplayL("Error accessing Newick Tree file [%s]\n", fullTreeName); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ParsInsert.cpp:3077:14: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 3077 | DisplayL("Newick Tree Read Completed: %d taxa\n", (fullTree->nodeList.size()+1)/2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: *** [makefile:19: ParsInsert.o] Error 1 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc returned exit code 2 make[1]: *** [debian/rules:18: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:15: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2022-07-24T08:53:02Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 108720 Build-Time: 6 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 24 Job: parsinsert_1.04-11 Machine Architecture: amd64 Package: parsinsert Package-Time: 45 Source-Version: 1.04-11 Space: 108720 Status: attempted Version: 1.04-11 -------------------------------------------------------------------------------- Finished at 2022-07-24T08:53:02Z Build needed 00:00:45, 108720k disk space