sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org

+==============================================================================+
| pbseqlib 5.3.4+dfsg-3 (mips64el)             Tue, 01 Dec 2020 14:23:21 +0000 |
+==============================================================================+

Package: pbseqlib
Version: 5.3.4+dfsg-3
Source Version: 5.3.4+dfsg-3
Distribution: unstable
Machine Architecture: amd64
Host Architecture: mips64el
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-52e141d7-51d5-4d65-b621-b6600f69c8b2' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-RZ03Cz/resolver-lX1vS4' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [37.0 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [37.0 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-01-0818.13.pdiff [4366 B]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-01-0818.13.pdiff [4366 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-01-0818.13.pdiff [9012 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-01-0818.13.pdiff [9012 B]
Get:6 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8231 kB]
Fetched 8465 kB in 2s (5408 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'pbseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pbseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/pbseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 970 kB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main pbseqlib 5.3.4+dfsg-3 (dsc) [2448 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main pbseqlib 5.3.4+dfsg-3 (tar) [958 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main pbseqlib 5.3.4+dfsg-3 (diff) [9444 B]
Fetched 970 kB in 0s (48.1 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pbseqlib-RZ03Cz/pbseqlib-5.3.4+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-RZ03Cz' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [490 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [580 B]
Fetched 2027 B in 0s (85.3 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64
  bsdextrautils build-essential cmake cmake-data
  cpp-10-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config
  crossbuild-essential-mips64el d-shlibs debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10
  g++-10-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64
  gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-10-mips64el-linux-gnuabi64
  gcc-10-mips64el-linux-gnuabi64-base gcc-9-base:mips64el
  gcc-mips64el-linux-gnuabi64 gettext gettext-base googletest groff-base
  hdf5-helpers:mips64el intltool-debian libaec-dev:mips64el libaec0:mips64el
  libarchive-zip-perl libarchive13 libatomic1:mips64el
  libatomic1-mips64el-cross libboost-dev:mips64el libboost1.71-dev:mips64el
  libbrotli1 libbrotli1:mips64el libbz2-1.0:mips64el libc6:mips64el libc6-dev
  libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross
  libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcroco3
  libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el
  libcurl3-gnutls:mips64el libcurl4 libcurl4-gnutls-dev:mips64el
  libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl
  libdeflate-dev:mips64el libdeflate0:mips64el libdpkg-perl libelf1 libexpat1
  libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-10-dev-mips64el-cross libgcc-9-dev:mips64el
  libgcc-s1:mips64el libgcc-s1-mips64el-cross libgcrypt20:mips64el
  libgfortran5:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el
  libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el
  libgssapi-krb5-2:mips64el libgtest-dev:mips64el libhdf5-103-1:mips64el
  libhdf5-cpp-103-1:mips64el libhdf5-dev:mips64el libhdf5-fortran-102:mips64el
  libhdf5-hl-100:mips64el libhdf5-hl-cpp-100:mips64el
  libhdf5-hl-fortran-100:mips64el libhogweed6:mips64el libhts-dev:mips64el
  libhts3:mips64el libicu67 libidn2-0:mips64el libio-string-perl libisl22
  libjpeg62-turbo:mips64el libjpeg62-turbo-dev:mips64el libjsoncpp1
  libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el
  libkrb5support0:mips64el libldap-2.4-2 libldap-2.4-2:mips64el
  liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc
  libmagic1 libncurses6 libnettle8:mips64el libnghttp2-14
  libnghttp2-14:mips64el libnsl-dev libnsl-dev:mips64el libnsl2:mips64el
  libnss-nis:mips64el libnss-nisplus:mips64el libp11-kit0:mips64el
  libpbbam-dev:mips64el libpbbam1.6.0:mips64el libpbcopper-dev:mips64el
  libpbcopper1.8.0:mips64el libperl5.32 libpipeline1 libprocps8 libpsl5
  libpsl5:mips64el libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib
  libreadline8 librhash0 librtmp1 librtmp1:mips64el libsasl2-2
  libsasl2-2:mips64el libsasl2-modules-db libsasl2-modules-db:mips64el
  libsigsegv2 libsqlite3-0 libssh2-1 libssh2-1:mips64el libssl-dev:mips64el
  libssl1.1:mips64el libstdc++-10-dev libstdc++-10-dev-mips64el-cross
  libstdc++-9-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross
  libsub-override-perl libsz2:mips64el libtasn1-6:mips64el libtirpc-dev
  libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0
  libunistring2:mips64el libuv1 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el
  linux-libc-dev-mips64el-cross m4 mailcap man-db media-types meson
  mime-support ninja-build perl perl-modules-5.32 pkg-config po-debconf procps
  python3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal
  readline-common sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc
  gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring
  g++-multilib g++-10-multilib gcc-10-doc
  g++-10-multilib-mips64el-linux-gnuabi64
  gcc-10-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison
  gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev
  libgettextpo-dev groff lrzip libboost-doc:mips64el libboost1.71-doc:mips64el
  libboost-atomic1.71-dev:mips64el libboost-chrono1.71-dev:mips64el
  libboost-container1.71-dev:mips64el libboost-context1.71-dev:mips64el
  libboost-contract1.71-dev:mips64el libboost-coroutine1.71-dev:mips64el
  libboost-date-time1.71-dev:mips64el libboost-exception1.71-dev:mips64el
  libboost-fiber1.71-dev:mips64el libboost-filesystem1.71-dev:mips64el
  libboost-graph1.71-dev:mips64el libboost-graph-parallel1.71-dev:mips64el
  libboost-iostreams1.71-dev:mips64el libboost-locale1.71-dev:mips64el
  libboost-log1.71-dev:mips64el libboost-math1.71-dev:mips64el
  libboost-mpi1.71-dev:mips64el libboost-mpi-python1.71-dev:mips64el
  libboost-numpy1.71-dev:mips64el libboost-program-options1.71-dev:mips64el
  libboost-python1.71-dev:mips64el libboost-random1.71-dev:mips64el
  libboost-regex1.71-dev:mips64el libboost-serialization1.71-dev:mips64el
  libboost-stacktrace1.71-dev:mips64el libboost-system1.71-dev:mips64el
  libboost-test1.71-dev:mips64el libboost-thread1.71-dev:mips64el
  libboost-timer1.71-dev:mips64el libboost-type-erasure1.71-dev:mips64el
  libboost-wave1.71-dev:mips64el libboost1.71-tools-dev:mips64el
  libmpfrc++-dev:mips64el libntl-dev:mips64el glibc-doc:mips64el
  libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el
  libcurl4-doc:mips64el libgnutls28-dev:mips64el libidn11-dev:mips64el
  libkrb5-dev:mips64el libldap2-dev:mips64el librtmp-dev:mips64el
  libssh2-1-dev:mips64el gnupg git bzr rng-tools:mips64el gnutls-bin:mips64el
  krb5-doc:mips64el krb5-user:mips64el libhdf5-doc:mips64el
  liblzma-doc:mips64el libssl-doc:mips64el libstdc++-10-doc
  libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk
  libyaml-shell-perl m4-doc apparmor less www-browser perl-doc
  libterm-readline-gnu-perl | libterm-readline-perl-perl
  libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk
  python3-venv python3-setuptools python3.9-venv python3.9-doc binfmt-support
  readline-doc
Recommended packages:
  gnupg libalgorithm-merge-perl curl | wget | lynx ca-certificates:mips64el
  ca-certificates libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs libgpg-error-l10n:mips64el
  krb5-locales:mips64el libldap-common libldap-common:mips64el libgpm2
  publicsuffix publicsuffix:mips64el libsasl2-modules
  libsasl2-modules:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl
  libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl
  psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64
  bsdextrautils build-essential cmake cmake-data
  cpp-10-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config
  crossbuild-essential-mips64el d-shlibs debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10
  g++-10-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64
  gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-10-mips64el-linux-gnuabi64
  gcc-10-mips64el-linux-gnuabi64-base gcc-9-base:mips64el
  gcc-mips64el-linux-gnuabi64 gettext gettext-base googletest groff-base
  hdf5-helpers:mips64el intltool-debian libaec-dev:mips64el libaec0:mips64el
  libarchive-zip-perl libarchive13 libatomic1:mips64el
  libatomic1-mips64el-cross libboost-dev:mips64el libboost1.71-dev:mips64el
  libbrotli1 libbrotli1:mips64el libbz2-1.0:mips64el libc6:mips64el libc6-dev
  libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross
  libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcroco3
  libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el
  libcurl3-gnutls:mips64el libcurl4 libcurl4-gnutls-dev:mips64el
  libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl
  libdeflate-dev:mips64el libdeflate0:mips64el libdpkg-perl libelf1 libexpat1
  libffi7:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-10-dev-mips64el-cross libgcc-9-dev:mips64el
  libgcc-s1:mips64el libgcc-s1-mips64el-cross libgcrypt20:mips64el
  libgfortran5:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el
  libgomp1:mips64el libgomp1-mips64el-cross libgpg-error0:mips64el
  libgssapi-krb5-2:mips64el libgtest-dev:mips64el libhdf5-103-1:mips64el
  libhdf5-cpp-103-1:mips64el libhdf5-dev:mips64el libhdf5-fortran-102:mips64el
  libhdf5-hl-100:mips64el libhdf5-hl-cpp-100:mips64el
  libhdf5-hl-fortran-100:mips64el libhogweed6:mips64el libhts-dev:mips64el
  libhts3:mips64el libicu67 libidn2-0:mips64el libio-string-perl libisl22
  libjpeg62-turbo:mips64el libjpeg62-turbo-dev:mips64el libjsoncpp1
  libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el
  libkrb5support0:mips64el libldap-2.4-2 libldap-2.4-2:mips64el
  liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc
  libmagic1 libncurses6 libnettle8:mips64el libnghttp2-14
  libnghttp2-14:mips64el libnsl-dev libnsl-dev:mips64el libnsl2:mips64el
  libnss-nis:mips64el libnss-nisplus:mips64el libp11-kit0:mips64el
  libpbbam-dev:mips64el libpbbam1.6.0:mips64el libpbcopper-dev:mips64el
  libpbcopper1.8.0:mips64el libperl5.32 libpipeline1 libprocps8 libpsl5
  libpsl5:mips64el libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib
  libreadline8 librhash0 librtmp1 librtmp1:mips64el libsasl2-2
  libsasl2-2:mips64el libsasl2-modules-db libsasl2-modules-db:mips64el
  libsigsegv2 libsqlite3-0 libssh2-1 libssh2-1:mips64el libssl-dev:mips64el
  libssl1.1:mips64el libstdc++-10-dev libstdc++-10-dev-mips64el-cross
  libstdc++-9-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross
  libsub-override-perl libsz2:mips64el libtasn1-6:mips64el libtirpc-dev
  libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0
  libunistring2:mips64el libuv1 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el
  linux-libc-dev-mips64el-cross m4 mailcap man-db media-types meson
  mime-support ninja-build perl perl-modules-5.32 pkg-config po-debconf procps
  python3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal
  readline-common sbuild-build-depends-main-dummy:mips64el sensible-utils ucf
  zlib1g:mips64el zlib1g-dev:mips64el
0 upgraded, 200 newly installed, 0 to remove and 0 not upgraded.
Need to get 176 MB of archives.
After this operation, 828 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1012 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-2 [140 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-5 [2821 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-5 [4119 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-5 [293 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.1~rc1-2 [799 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.1~rc1-2 [1955 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.0-3 [37.8 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 1.0.1 [18.2 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 mailcap all 3.67 [31.3 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 mime-support all 3.66 [10.9 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1~rc3-1 [73.7 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1~rc3-1 [168 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.1~rc1-2 [1751 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.1~rc1-2 [460 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.0-3 [21.0 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.0-3 [64.0 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10.2.0-19 [200 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.3.0-19 [198 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2+20201114-1 [102 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.16-5 [62.7 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.16-5 [262 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-1 [814 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.35.1-2cross2 [2354 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-4 [2344 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-19 [1741 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-19 [44.7 MB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.18.4-1 [1725 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3 [693 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.3-2 [342 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b1 [282 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.56+dfsg-1 [232 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.42.0-1 [78.5 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.1 [55.3 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.72.0-1 [336 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.4.0-1 [124 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.40.0-1 [132 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.18.4-1 [5599 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mips64el-linux-gnuabi64-base amd64 10.2.0-17cross1 [200 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libisl22 amd64 0.22.1-1 [612 kB]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-mips64el-linux-gnuabi64 amd64 10.2.0-17cross1 [6983 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [16.9 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10.2.0-17cross1 [196 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.31-2cross1 [1336 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mips64el-cross all 10.2.0-17cross1 [69.7 kB]
Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 10.2.0-17cross1 [88.3 kB]
Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 10.2.0-17cross1 [7368 B]
Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-mips64el-cross all 10.2.0-17cross1 [270 kB]
Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mips64el-linux-gnuabi64 amd64 10.2.0-17cross1 [13.6 MB]
Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [1480 B]
Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 10.2.0-17cross1 [393 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.7.10-1cross1 [1237 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.31-2cross1 [2256 kB]
Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-mips64el-cross all 10.2.0-17cross1 [1764 kB]
Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-mips64el-linux-gnuabi64 amd64 10.2.0-17cross1 [7648 kB]
Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:10.2.0-1 [1192 B]
Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB]
Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB]
Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB]
Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB]
Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB]
Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB]
Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB]
Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB]
Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.8 [6704 B]
Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.95 [17.8 kB]
Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB]
Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB]
Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB]
Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-1 [166 kB]
Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB]
Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.3-1 [1364 kB]
Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB]
Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB]
Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB]
Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB]
Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 googletest all 1.10.0.20201025-1 [629 kB]
Get:120 http://debian.oregonstate.edu/debian unstable/main mips64el hdf5-helpers mips64el 1.10.6+repack-2 [40.0 kB]
Get:121 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10.2.0-19 [69.7 kB]
Get:122 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.17-1 [93.1 kB]
Get:123 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.45.6-1 [71.5 kB]
Get:124 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.18.3-4 [63.2 kB]
Get:125 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.18.3-4 [120 kB]
Get:126 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6.1-2 [15.0 kB]
Get:127 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1h-1 [1147 kB]
Get:128 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.18.3-4 [328 kB]
Get:129 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.18.3-4 [150 kB]
Get:130 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc3 mips64el 1.2.6-3 [74.0 kB]
Get:131 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl2 mips64el 1.3.0-2 [35.5 kB]
Get:132 http://debian.oregonstate.edu/debian unstable/main mips64el libnss-nis mips64el 3.1-4 [22.7 kB]
Get:133 http://debian.oregonstate.edu/debian unstable/main mips64el libnss-nisplus mips64el 1.3-4 [19.0 kB]
Get:134 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.31-4 [2546 kB]
Get:135 http://debian.oregonstate.edu/debian unstable/main mips64el libaec0 mips64el 1.0.4-1 [20.6 kB]
Get:136 http://debian.oregonstate.edu/debian unstable/main mips64el libsz2 mips64el 1.0.4-1 [6736 B]
Get:137 http://debian.oregonstate.edu/debian unstable/main mips64el libaec-dev mips64el 1.0.4-1 [19.9 kB]
Get:138 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10.2.0-19 [7528 B]
Get:139 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10.2.0-19 [90.2 kB]
Get:140 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.3.0-19 [248 kB]
Get:141 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10.2.0-19 [433 kB]
Get:142 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.9.11-1 [1224 kB]
Get:143 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.17-1 [115 kB]
Get:144 http://debian.oregonstate.edu/debian unstable/main mips64el libtirpc-dev mips64el 1.2.6-3 [200 kB]
Get:145 http://debian.oregonstate.edu/debian unstable/main mips64el libnsl-dev mips64el 1.3.0-2 [70.3 kB]
Get:146 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.31-4 [2201 kB]
Get:147 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.3.0-19 [1739 kB]
Get:148 http://debian.oregonstate.edu/debian unstable/main mips64el libboost1.71-dev mips64el 1.71.0-7+b1 [9098 kB]
Get:149 http://debian.oregonstate.edu/debian unstable/main mips64el libboost-dev mips64el 1.71.0.3 [4344 B]
Get:150 http://debian.oregonstate.edu/debian unstable/main mips64el libbrotli1 mips64el 1.0.9-2+b1 [277 kB]
Get:151 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.8-4 [47.5 kB]
Get:152 http://debian.oregonstate.edu/debian unstable/main mips64el libgmp10 mips64el 2:6.2.1+dfsg-1 [553 kB]
Get:153 http://debian.oregonstate.edu/debian unstable/main mips64el libnettle8 mips64el 3.6-2 [249 kB]
Get:154 http://debian.oregonstate.edu/debian unstable/main mips64el libhogweed6 mips64el 3.6-2 [306 kB]
Get:155 http://debian.oregonstate.edu/debian unstable/main mips64el libunistring2 mips64el 0.9.10-4 [371 kB]
Get:156 http://debian.oregonstate.edu/debian unstable/main mips64el libidn2-0 mips64el 2.3.0-4 [85.4 kB]
Get:157 http://debian.oregonstate.edu/debian unstable/main mips64el libffi7 mips64el 3.3-5 [22.6 kB]
Get:158 http://debian.oregonstate.edu/debian unstable/main mips64el libp11-kit0 mips64el 0.23.21-2 [273 kB]
Get:159 http://debian.oregonstate.edu/debian unstable/main mips64el libtasn1-6 mips64el 4.16.0-2 [52.6 kB]
Get:160 http://debian.oregonstate.edu/debian unstable/main mips64el libgnutls30 mips64el 3.6.15-4 [1033 kB]
Get:161 http://debian.oregonstate.edu/debian unstable/main mips64el libdb5.3 mips64el 5.3.28+dfsg1-0.6 [597 kB]
Get:162 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-modules-db mips64el 2.1.27+dfsg-2 [68.3 kB]
Get:163 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-2 mips64el 2.1.27+dfsg-2 [102 kB]
Get:164 http://debian.oregonstate.edu/debian unstable/main mips64el libldap-2.4-2 mips64el 2.4.56+dfsg-1 [211 kB]
Get:165 http://debian.oregonstate.edu/debian unstable/main mips64el libnghttp2-14 mips64el 1.42.0-1 [73.8 kB]
Get:166 http://debian.oregonstate.edu/debian unstable/main mips64el libpsl5 mips64el 0.21.0-1.1 [55.0 kB]
Get:167 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB]
Get:168 http://debian.oregonstate.edu/debian unstable/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b2 [56.0 kB]
Get:169 http://debian.oregonstate.edu/debian unstable/main mips64el libgpg-error0 mips64el 1.38-2 [74.2 kB]
Get:170 http://debian.oregonstate.edu/debian unstable/main mips64el libgcrypt20 mips64el 1.8.7-2 [502 kB]
Get:171 http://debian.oregonstate.edu/debian unstable/main mips64el libssh2-1 mips64el 1.8.0-2.1 [134 kB]
Get:172 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl3-gnutls mips64el 7.72.0-1 [309 kB]
Get:173 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl4-gnutls-dev mips64el 7.72.0-1 [436 kB]
Get:174 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate0 mips64el 1.6-1 [50.6 kB]
Get:175 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate-dev mips64el 1.6-1 [45.8 kB]
Get:176 http://debian.oregonstate.edu/debian unstable/main mips64el libgfortran5 mips64el 10.2.0-19 [308 kB]
Get:177 http://debian.oregonstate.edu/debian unstable/main mips64el libgtest-dev mips64el 1.10.0.20201025-1 [258 kB]
Get:178 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-103-1 mips64el 1.10.6+repack-2 [831 kB]
Get:179 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-cpp-103-1 mips64el 1.10.6+repack-2 [120 kB]
Get:180 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-fortran-102 mips64el 1.10.6+repack-2 [93.1 kB]
Get:181 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-hl-100 mips64el 1.10.6+repack-2 [73.3 kB]
Get:182 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-hl-fortran-100 mips64el 1.10.6+repack-2 [50.9 kB]
Get:183 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-hl-cpp-100 mips64el 1.10.6+repack-2 [37.3 kB]
Get:184 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB]
Get:185 http://debian.oregonstate.edu/debian unstable/main mips64el libjpeg62-turbo mips64el 1:2.0.5-1.1 [138 kB]
Get:186 http://debian.oregonstate.edu/debian unstable/main mips64el libjpeg62-turbo-dev mips64el 1:2.0.5-1.1 [266 kB]
Get:187 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-dev mips64el 1.10.6+repack-2 [2506 kB]
Get:188 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma5 mips64el 5.2.4-1+b1 [151 kB]
Get:189 http://debian.oregonstate.edu/debian unstable/main mips64el libhts3 mips64el 1.11-2 [343 kB]
Get:190 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma-dev mips64el 5.2.4-1+b1 [214 kB]
Get:191 http://debian.oregonstate.edu/debian unstable/main mips64el libhts-dev mips64el 1.11-2 [3878 kB]
Get:192 http://debian.oregonstate.edu/debian unstable/main mips64el libpbcopper1.8.0 mips64el 1.8.0+dfsg-2 [376 kB]
Get:193 http://debian.oregonstate.edu/debian unstable/main mips64el libpbbam1.6.0 mips64el 1.6.0+dfsg-2 [570 kB]
Get:194 http://debian.oregonstate.edu/debian unstable/main mips64el libssl-dev mips64el 1.1.1h-1 [1631 kB]
Get:195 http://debian.oregonstate.edu/debian unstable/main mips64el libpbbam-dev mips64el 1.6.0+dfsg-2 [87.2 kB]
Get:196 http://debian.oregonstate.edu/debian unstable/main mips64el libpbcopper-dev mips64el 1.8.0+dfsg-2 [729 kB]
Get:197 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.1-1 [112 kB]
Get:198 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 50.3.0-1 [187 kB]
Get:199 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.56.0-1.1 [435 kB]
Get:200 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 176 MB in 3s (58.7 MB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 10514 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.36.1-2_amd64.deb ...
Unpacking bsdextrautils (2.36.1-2) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ...
Unpacking groff-base (1.22.4-5) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.9.3-2_amd64.deb ...
Unpacking man-db (2.9.3-2) ...
Selecting previously unselected package perl-modules-5.32.
Preparing to unpack .../05-perl-modules-5.32_5.32.0-5_all.deb ...
Unpacking perl-modules-5.32 (5.32.0-5) ...
Selecting previously unselected package libperl5.32:amd64.
Preparing to unpack .../06-libperl5.32_5.32.0-5_amd64.deb ...
Unpacking libperl5.32:amd64 (5.32.0-5) ...
Selecting previously unselected package perl.
Preparing to unpack .../07-perl_5.32.0-5_amd64.deb ...
Unpacking perl (5.32.0-5) ...
Selecting previously unselected package liblocale-gettext-perl.
Preparing to unpack .../08-liblocale-gettext-perl_1.07-4+b1_amd64.deb ...
Unpacking liblocale-gettext-perl (1.07-4+b1) ...
Selecting previously unselected package libpython3.9-minimal:amd64.
Preparing to unpack .../09-libpython3.9-minimal_3.9.1~rc1-2_amd64.deb ...
Unpacking libpython3.9-minimal:amd64 (3.9.1~rc1-2) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../10-libexpat1_2.2.10-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.2.10-1) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../11-python3.9-minimal_3.9.1~rc1-2_amd64.deb ...
Unpacking python3.9-minimal (3.9.1~rc1-2) ...
Setting up libpython3.9-minimal:amd64 (3.9.1~rc1-2) ...
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Setting up libfile-homedir-perl (1.006-1) ...
Setting up python3.9 (3.9.1~rc1-2) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up g++-mips64el-linux-gnuabi64 (4:10.2.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3 (3.9.0-3) ...
Setting up libxml-sax-perl (1.02+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up python3-pkg-resources (50.3.0-1) ...
Setting up meson (0.56.0-1.1) ...
Setting up libxml-simple-perl (2.25-1) ...
Setting up libconfig-auto-perl (0.44-1) ...
Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ...
Setting up dpkg-cross (2.6.15-3.1) ...
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Setting up libgcc-s1:mips64el (10.2.0-19) ...
Setting up dh-autoreconf (19) ...
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Setting up libnsl2:mips64el (1.3.0-2) ...
Setting up debhelper (13.2.1) ...
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Setting up libnss-nis:mips64el (3.1-4) ...
Setting up libc6:mips64el (2.31-4) ...
Setting up libnsl-dev:mips64el (1.3.0-2) ...
Setting up libtasn1-6:mips64el (4.16.0-2) ...
Setting up libc6-dev:mips64el (2.31-4) ...
Setting up libbz2-1.0:mips64el (1.0.8-4) ...
Setting up libdb5.3:mips64el (5.3.28+dfsg1-0.6) ...
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Setting up libkeyutils1:mips64el (1.6.1-2) ...
Setting up liblzma5:mips64el (5.2.4-1+b1) ...
Setting up libgpg-error0:mips64el (1.38-2) ...
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Setting up libgcrypt20:mips64el (1.8.7-2) ...
Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ...
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Setting up libcom-err2:mips64el (1.45.6-1) ...
Setting up libgomp1:mips64el (10.2.0-19) ...
Setting up libaec0:mips64el (1.0.4-1) ...
Setting up libkrb5support0:mips64el (1.18.3-4) ...
Setting up libsasl2-modules-db:mips64el (2.1.27+dfsg-2) ...
Setting up libjpeg62-turbo:mips64el (1:2.0.5-1.1) ...
Setting up libnettle8:mips64el (3.6-2) ...
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Setting up libgmp10:mips64el (2:6.2.1+dfsg-1) ...
Setting up libp11-kit0:mips64el (0.23.21-2) ...
Setting up libssl-dev:mips64el (1.1.1h-1) ...
Setting up libatomic1:mips64el (10.2.0-19) ...
Setting up libk5crypto3:mips64el (1.18.3-4) ...
Setting up libsasl2-2:mips64el (2.1.27+dfsg-2) ...
Setting up libgfortran5:mips64el (10.2.0-19) ...
Setting up liblzma-dev:mips64el (5.2.4-1+b1) ...
Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ...
Setting up libpbcopper1.8.0:mips64el (1.8.0+dfsg-2) ...
Setting up libssh2-1:mips64el (1.8.0-2.1) ...
Setting up libkrb5-3:mips64el (1.18.3-4) ...
Setting up libdeflate-dev:mips64el (1.6-1) ...
Setting up libsz2:mips64el (1.0.4-1) ...
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Setting up libhogweed6:mips64el (3.6-2) ...
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Setting up libgnutls30:mips64el (3.6.15-4) ...
Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libgssapi-krb5-2:mips64el (1.18.3-4) ...
Setting up libpbcopper-dev:mips64el (1.8.0+dfsg-2) ...
Setting up libhdf5-103-1:mips64el (1.10.6+repack-2) ...
Setting up libhdf5-cpp-103-1:mips64el (1.10.6+repack-2) ...
Setting up libhdf5-hl-100:mips64el (1.10.6+repack-2) ...
Setting up libstdc++-9-dev:mips64el (9.3.0-19) ...
Setting up libboost1.71-dev:mips64el (1.71.0-7+b1) ...
Setting up libldap-2.4-2:mips64el (2.4.56+dfsg-1) ...
Setting up libcurl3-gnutls:mips64el (7.72.0-1) ...
Setting up libcurl4-gnutls-dev:mips64el (7.72.0-1) ...
Setting up libhdf5-hl-cpp-100:mips64el (1.10.6+repack-2) ...
Setting up libhdf5-fortran-102:mips64el (1.10.6+repack-2) ...
Setting up libhdf5-hl-fortran-100:mips64el (1.10.6+repack-2) ...
Setting up libboost-dev:mips64el (1.71.0.3) ...
Setting up libhts3:mips64el (1.11-2) ...
Setting up libhts-dev:mips64el (1.11-2) ...
Setting up libhdf5-dev:mips64el (1.10.6+repack-2) ...
update-alternatives: using /usr/lib/mips64el-linux-gnuabi64/pkgconfig/hdf5-serial.pc to provide /usr/lib/mips64el-linux-gnuabi64/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpbbam1.6.0:mips64el (1.6.0+dfsg-2) ...
Setting up libpbbam-dev:mips64el (1.6.0+dfsg-2) ...
Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (mips64el included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64)
Toolchain package versions: binutils_2.35.1-3 dpkg-dev_1.20.5 g++-10_10.2.0-19 gcc-10_10.2.0-19 libc6-dev_2.31-4 libstdc++-10-dev_10.2.0-19 libstdc++-10-dev-mips64el-cross_10.2.0-17cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.0-19 libstdc++6-mips64el-cross_10.2.0-17cross1 linux-libc-dev_5.9.11-1
Package versions: adduser_3.118 apt_2.1.12 autoconf_2.69-11.1 automake_1:1.16.3-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1~rc3-1 binutils_2.35.1-3 binutils-common_2.35.1-3 binutils-mips64el-linux-gnuabi64_2.35.1-2cross2 binutils-x86-64-linux-gnu_2.35.1-3 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 cmake_3.18.4-1 cmake-data_3.18.4-1 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-19 cpp-10-mips64el-linux-gnuabi64_10.2.0-17cross1 cpp-8_8.4.0-5 cpp-mips64el-linux-gnuabi64_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-mips64el_12.8 d-shlibs_0.95 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: pbseqlib
Binary: libblasr-dev, libblasr5.3.4, libpbseq, libpbseq-dev, libpbdata-dev, libpbihdf-dev
Architecture: any
Version: 5.3.4+dfsg-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/PacificBiosciences/blasr_libcpp
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib
Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git
Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev
Package-List:
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 libblasr5.3.4 deb libs optional arch=any
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 libpbihdf-dev deb libdevel optional arch=any
 libpbseq deb science optional arch=any
 libpbseq-dev deb libdevel optional arch=any
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-----END PGP SIGNATURE-----

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.8zJUFgh6/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 16 12:52:04 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pbseqlib_5.3.4+dfsg-3.dsc
dpkg-source: info: extracting pbseqlib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pbseqlib_5.3.4+dfsg.orig.tar.xz
dpkg-source: info: unpacking pbseqlib_5.3.4+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-1.10.1-support.patch
dpkg-source: info: applying hdf5-1.10.0-support.patch
dpkg-source: info: applying meson.patch
dpkg-source: info: applying static+shared_lib.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-52e141d7-51d5-4d65-b621-b6600f69c8b2
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package pbseqlib
dpkg-buildpackage: info: source version 5.3.4+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture mips64el
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
find -name defines.mk -delete
rm -f pbdata/libconfig.h
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-mips64el-linux-gnuabi64 && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/mips64el-linux-gnuabi64 --cross-file /<<BUILDDIR>>/pbseqlib-5.3.4\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf
DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
The Meson build system
Version: 0.56.0
Source dir: /<<PKGBUILDDIR>>
Build dir: /<<PKGBUILDDIR>>/obj-mips64el-linux-gnuabi64
Build type: cross build
Project name: libblasr
Project version: 5.3.4
Using 'CXXFLAGS' from environment with value: '-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -I/usr/include/hdf5/serial'
C++ compiler for the host machine: /usr/bin/mips64el-linux-gnuabi64-g++ (gcc 10.2.0 "mips64el-linux-gnuabi64-g++ (Debian 10.2.0-17) 10.2.0")
C++ linker for the host machine: /usr/bin/mips64el-linux-gnuabi64-g++ ld.bfd 2.35.1
C++ compiler for the build machine: c++ (gcc 10.2.0 "c++ (Debian 10.2.0-19) 10.2.0")
C++ linker for the build machine: c++ ld.bfd 2.35.1
Build machine cpu family: x86_64
Build machine cpu: x86_64
Host machine cpu family: x86_64
Host machine cpu: x86_64
Target machine cpu family: mips64
Target machine cpu: mips64
Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES 
Compiler for C++ supports arguments -Wno-unused-variable: YES 
Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES 
Found pkg-config: /usr/bin/mips64el-linux-gnuabi64-pkg-config (0.29.2)
Run-time dependency Boost found: YES 1.71.0 (/usr/include)
Run-time dependency pbbam found: YES 1.6.0
Run-time dependency zlib found: YES 1.2.11
Run-time dependency htslib found: YES 1.11-2
Library rt found: YES
WARNING: Project targeting '>= 0.46.0' but tried to use feature introduced in '0.49.0': disabler arg in dependency.
Run-time dependency HDF5 for cpp found: YES 1.10.6
Configuring LibBlasrConfig.h using configuration
Program tools/check-formatting found: YES (/<<PKGBUILDDIR>>/tools/check-formatting)
WARNING: Project targeting '>= 0.46.0' but tried to use feature introduced in '0.53.0': Fallback without variable name.
Run-time dependency GTest found: YES 1.10.0
Build targets in project: 3
WARNING: Project specifies a minimum meson_version '>= 0.46.0' but uses features which were added in newer versions:
 * 0.49.0: {'disabler arg in dependency'}
 * 0.53.0: {'Fallback without variable name'}

Option buildtype is: plain [default: release]
Found ninja-1.10.1 at /usr/bin/ninja
   dh_auto_build -a
	cd obj-mips64el-linux-gnuabi64 && LC_ALL=C.UTF-8 ninja -j1 -v
[1/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o -MF libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o.d -o libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o -c ../hdf/BufferedHDF2DArray.cpp
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:82:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   82 | DEFINE_TYPED_CREATE_ROW(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:83:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   83 | DEFINE_TYPED_CREATE_ROW(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:84:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   84 | DEFINE_TYPED_CREATE_ROW(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned char]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:85:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   85 | DEFINE_TYPED_CREATE_ROW(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short unsigned int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:86:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   86 | DEFINE_TYPED_CREATE_ROW(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:87:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   87 | DEFINE_TYPED_CREATE_ROW(int16_t, H5::PredType::NATIVE_INT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = float]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:88:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   88 | DEFINE_TYPED_CREATE_ROW(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[2/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o -MF libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o.d -o libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o -c ../hdf/BufferedHDFArray.cpp
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:67:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   67 | DEFINE_TYPED_CREATE_ARRAY(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:68:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   68 | DEFINE_TYPED_CREATE_ARRAY(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char*]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:69:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   69 | DEFINE_TYPED_CREATE_ARRAY(char *, H5::StrType(0, H5T_VARIABLE))
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned char]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:70:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   70 | DEFINE_TYPED_CREATE_ARRAY(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:71:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   71 | DEFINE_TYPED_CREATE_ARRAY(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = float]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:72:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   72 | DEFINE_TYPED_CREATE_ARRAY(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short unsigned int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:73:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   73 | DEFINE_TYPED_CREATE_ARRAY(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = std::__cxx11::basic_string<char>]’:
../hdf/BufferedHDFArray.cpp:79:86: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |     dataset = container->createDataSet(datasetName.c_str(), varStrType, space, cparms);
      |                                                                                      ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[3/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o -MF libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o.d -o libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o -c ../hdf/DatasetCollection.cpp
[4/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o -c ../hdf/HDFAlnGroupGroup.cpp
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFArray.hpp:9,
                 from ../hdf/HDFAlnGroupGroup.hpp:6,
                 from ../hdf/HDFAlnGroupGroup.cpp:1:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = std::__cxx11::basic_string<char>; DSLength = long unsigned int]’:
../hdf/HDFArray.hpp:67:20:   required from ‘void HDFArray<T>::Write(const T*, int) [with T = std::__cxx11::basic_string<char>]’
../hdf/HDFAlnGroupGroup.cpp:16:29:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned int; DSLength = long unsigned int]’:
../hdf/HDFArray.hpp:67:20:   required from ‘void HDFArray<T>::Write(const T*, int) [with T = unsigned int]’
../hdf/HDFAlnGroupGroup.cpp:18:25:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
[5/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o -c ../hdf/HDFAlnInfoGroup.cpp
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAlnInfoGroup.cpp:44:77:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[6/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o -c ../hdf/HDFAtom.cpp
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::Create(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:9:92: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
    9 |     attribute = object.createAttribute(atomName.c_str(), strType, H5::DataSpace(H5S_SCALAR));
      |                                                                                            ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:20:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   20 | DEFINE_TYPED_CREATE_ATOM(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:21:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   21 | DEFINE_TYPED_CREATE_ATOM(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:22:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   22 | DEFINE_TYPED_CREATE_ATOM(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:23:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   23 | DEFINE_TYPED_CREATE_ATOM(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:24:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   24 | DEFINE_TYPED_CREATE_ATOM(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:25:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   25 | DEFINE_TYPED_CREATE_ATOM(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:26:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   26 | DEFINE_TYPED_CREATE_ATOM(uint64_t, H5::PredType::STD_I64LE)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[7/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o -c ../hdf/HDFAttributable.cpp
../hdf/HDFAttributable.cpp: In member function ‘int HDFAttributable::ContainsAttribute(const string&)’:
../hdf/HDFAttributable.cpp:48:28: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   48 |     } catch (H5::Exception e) {
      |                            ^
[8/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o -c ../hdf/HDFBaseCallsWriter.cpp
../hdf/HDFBaseCallsWriter.cpp: In member function ‘virtual void HDFBaseCallsWriter::Close()’:
../hdf/HDFBaseCallsWriter.cpp:364:28: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
  364 |     } catch (H5::Exception e) {
      |                            ^
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFWriterBase.hpp:12,
                 from ../hdf/HDFBaseCallsWriter.hpp:12,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFBaseCallsWriter.cpp:342:26:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = short unsigned int; DSLength = long unsigned int]’:
../hdf/HDFBaseCallsWriter.cpp:350:35:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
In file included from ../hdf/HDFBaseCallsWriter.hpp:11,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFBaseCallsWriter.hpp:11,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[9/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o -c ../hdf/HDFBaxWriter.cpp
[10/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o -c ../hdf/HDFCmpExperimentGroup.cpp
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFArray.hpp:9,
                 from ../hdf/HDFCmpExperimentGroup.hpp:10,
                 from ../hdf/HDFCmpExperimentGroup.cpp:1:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFArray.hpp:67:20:   required from ‘void HDFArray<T>::Write(const T*, int) [with T = unsigned char]’
../hdf/HDFCmpExperimentGroup.cpp:36:69:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = char; DSLength = long unsigned int]’:
../hdf/HDFArray.hpp:67:20:   required from ‘void HDFArray<T>::Write(const T*, int) [with T = char]’
../hdf/HDFCmpExperimentGroup.cpp:199:72:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
[11/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o -c ../hdf/HDFCmpSupportedFields.cpp
[12/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFData.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFData.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFData.cpp.o -c ../hdf/HDFData.cpp
../hdf/HDFData.cpp: In member function ‘int HDFData::BaseInitializeDataset(H5::Group&, const string&)’:
../hdf/HDFData.cpp:37:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   37 |     dataset = hdfFile.openDataSet(_datasetName.c_str());
      |                                                       ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/HDFData.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/HDFData.cpp: In member function ‘int HDFData::InitializeDataset(H5::Group&, const string&)’:
../hdf/HDFData.cpp:52:59: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   52 |         dataset = hdfFile.openDataSet(_datasetName.c_str());
      |                                                           ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/HDFData.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[13/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o -c ../hdf/HDFFile.cpp
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:23:33: warning: catching polymorphic type ‘class H5::FileIException’ by value [-Wcatch-value=]
   23 |         } catch (FileIException e) {
      |                                 ^
../hdf/HDFFile.cpp:34:75: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy]
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:48,
                 from ../hdf/HDFFile.hpp:8,
                 from ../hdf/HDFFile.cpp:1:
/usr/include/hdf5/serial/H5File.h:101:9: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’
  101 |         H5File(const H5File& original);
      |         ^~~~~~
/usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’:
/usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   25 | class H5_DLLCPP H5File : public Group {
      |                 ^~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:47,
                 from ../hdf/HDFFile.hpp:8,
                 from ../hdf/HDFFile.cpp:1:
/usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   57 |         Group(const Group& original);
      |         ^~~~~
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:34:75: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
../hdf/HDFFile.cpp:35:33: warning: catching polymorphic type ‘class H5::FileIException’ by value [-Wcatch-value=]
   35 |         } catch (FileIException fileException) {
      |                                 ^~~~~~~~~~~~~
[14/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o -c ../hdf/HDFGroup.cpp
../hdf/HDFGroup.cpp: In member function ‘int HDFGroup::Initialize(H5::Group&, std::string)’:
../hdf/HDFGroup.cpp:18:47: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   18 |         group = fg.openGroup(groupName.c_str());
      |                                               ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:47,
                 from ../hdf/HDFGroup.hpp:9,
                 from ../hdf/HDFGroup.cpp:1:
/usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   57 |         Group(const Group& original);
      |         ^~~~~
[15/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o -c ../hdf/HDFNewBasReader.cpp
[16/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o -c ../hdf/HDFPulseCallsWriter.cpp
../hdf/HDFPulseCallsWriter.cpp: In member function ‘virtual void HDFPulseCallsWriter::Close()’:
../hdf/HDFPulseCallsWriter.cpp:513:28: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
  513 |     } catch (H5::Exception e) {
      |                            ^
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFWriterBase.hpp:12,
                 from ../hdf/HDFPulseCallsWriter.hpp:12,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFPulseCallsWriter.cpp:492:47:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = short unsigned int; DSLength = long unsigned int]’:
../hdf/HDFPulseCallsWriter.cpp:497:39:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned int; DSLength = long unsigned int]’:
../hdf/HDFPulseCallsWriter.cpp:498:49:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[17/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o -c ../hdf/HDFPulseDataFile.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[18/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o -c ../hdf/HDFPulseH5Writer.cpp
[19/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o -c ../hdf/HDFPulseWriter.cpp
[20/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o -c ../hdf/HDFRegionsWriter.cpp
../hdf/HDFRegionsWriter.cpp: In member function ‘bool HDFRegionsWriter::Write(const std::vector<RegionAnnotation>&)’:
../hdf/HDFRegionsWriter.cpp:44:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   44 |     for (auto annotation : annotations)
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFWriterBase.hpp:17,
                 from ../hdf/HDFRegionsWriter.hpp:13,
                 from ../hdf/HDFRegionsWriter.cpp:3:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
[21/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o -c ../hdf/HDFRegionTableReader.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../hdf/HDFRegionTableReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:45:26:   required from ‘int HDFAtom<T>::Initialize(HDFData&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFRegionTableReader.cpp:31:54:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../hdf/HDFRegionTableReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[22/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o -c ../hdf/HDFScanDataReader.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:26:67:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:29:67:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:33:75:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[23/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o -c ../hdf/HDFScanDataWriter.cpp
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[24/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o -c ../hdf/HDFUtils.cpp
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/cassert:44,
                 from ../pbdata/reads/RegionTypeMap.hpp:7,
                 from ../pbdata/reads/RegionAnnotation.hpp:17,
                 from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFBasReader.hpp:21,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFBasReader.hpp: In instantiation of ‘void T_HDFBasReader<T_Sequence>::GetMinMaxHoleNumber(UInt&, UInt&) [with T_Sequence = FASTASequence; UInt = unsigned int]’:
../hdf/HDFUtils.cpp:41:55:   required from here
../hdf/HDFBasReader.hpp:1233:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
 1233 |         assert(nReads >= 0);
      |                ~~~~~~~^~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = FASTASequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFUtils.cpp:39:38:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[25/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o -c ../hdf/HDFWriterBase.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFWriterBase.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFWriterBase.cpp:49:88:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFWriterBase.hpp:11,
                 from ../hdf/HDFWriterBase.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFWriterBase.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFWriterBase.hpp:11,
                 from ../hdf/HDFWriterBase.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[26/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o -c ../hdf/HDFZMWMetricsWriter.cpp
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFZMWMetricsWriter.hpp:7,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = float; DSLength = long unsigned int]’:
../hdf/HDFZMWMetricsWriter.cpp:54:27:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFZMWMetricsWriter.cpp:55:30:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWMetricsWriter.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.hpp:6,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[27/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o -c ../hdf/HDFZMWReader.cpp
[28/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o -c ../hdf/HDFZMWWriter.cpp
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFZMWWriter.hpp:11,
                 from ../hdf/HDFZMWWriter.cpp:5:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned int; DSLength = long unsigned int]’:
../hdf/HDFZMWWriter.cpp:149:26:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFZMWWriter.cpp:151:28:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWWriter.hpp:12,
                 from ../hdf/HDFZMWWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWWriter.hpp:10,
                 from ../hdf/HDFZMWWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[29/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -c ../alignment/algorithms/alignment/sdp/SDPFragment.cpp
[30/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -c ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64/bits/c++allocator.h:33,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/allocator.h:46,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/string:41,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:4,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
/usr/mips64el-linux-gnuabi64/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[31/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -c ../alignment/algorithms/alignment/AlignmentUtils.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64/bits/c++allocator.h:33,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/allocator.h:46,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/string:41,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:4,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
/usr/mips64el-linux-gnuabi64/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[32/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -c ../alignment/algorithms/alignment/BaseScoreFunction.cpp
[33/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -c ../alignment/algorithms/alignment/ExtendAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64/bits/c++allocator.h:33,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/allocator.h:46,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/vector:64,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:6,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
/usr/mips64el-linux-gnuabi64/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[34/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -c ../alignment/algorithms/alignment/GuidedAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64/bits/c++allocator.h:33,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/allocator.h:46,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/string:41,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_classes.h:40,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/ios_base.h:41,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/ios:42,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/ostream:38,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:6,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
/usr/mips64el-linux-gnuabi64/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[35/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -c ../alignment/algorithms/alignment/IDSScoreFunction.cpp
[36/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o -c ../alignment/algorithms/alignment/KBandAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64/bits/c++allocator.h:33,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/allocator.h:46,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/vector:64,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
/usr/mips64el-linux-gnuabi64/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[37/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -c ../alignment/algorithms/alignment/QualityValueScoreFunction.cpp
[38/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -c ../alignment/algorithms/alignment/ScoreMatrices.cpp
[39/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -c ../alignment/algorithms/alignment/StringToScoreMatrix.cpp
[40/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -c ../alignment/algorithms/anchoring/BWTSearch.cpp
[41/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -c ../alignment/algorithms/anchoring/ClusterProbability.cpp
[42/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o -c ../alignment/algorithms/anchoring/Coordinate.cpp
[43/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -c ../alignment/algorithms/anchoring/FindMaxInterval.cpp
[44/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o -c ../alignment/algorithms/sorting/DifferenceCovers.cpp
[45/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o -c ../alignment/algorithms/sorting/LightweightSuffixArray.cpp
[46/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o -c ../alignment/algorithms/sorting/MultikeyQuicksort.cpp
[47/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o -c ../alignment/algorithms/sorting/qsufsort.cpp
[48/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o -c ../alignment/datastructures/alignment/AlignmentCandidate.cpp
[49/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o -c ../alignment/datastructures/alignment/AlignmentContext.cpp
[50/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o -c ../alignment/datastructures/alignment/Alignment.cpp
../alignment/datastructures/alignment/Alignment.cpp: In member function ‘void blasr::Alignment::CopyStats(blasr::Alignment&)’:
../alignment/datastructures/alignment/Alignment.cpp:35:47: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   35 |     AlignmentStats::CopyStats((AlignmentStats)rhs);
      |                                               ^~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/datastructures/alignment/Alignment.cpp:2:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
[51/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o -c ../alignment/datastructures/alignment/AlignmentMap.cpp
[52/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o -c ../alignment/datastructures/alignment/AlignmentStats.cpp
[53/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o -c ../alignment/datastructures/alignment/CmpFile.cpp
[54/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o -c ../alignment/datastructures/alignment/FilterCriteria.cpp
[55/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o -c ../alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.cpp
[56/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o -c ../alignment/datastructures/alignmentset/SAMQVConversion.cpp
[57/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o -c ../alignment/datastructures/alignmentset/SAMSupplementalQVList.cpp
[58/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o -c ../alignment/datastructures/anchoring/AnchorParameters.cpp
[59/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o -c ../alignment/datastructures/anchoring/ClusterList.cpp
[60/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o -c ../alignment/datastructures/anchoring/MatchPos.cpp
[61/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -c ../alignment/datastructures/anchoring/WeightedInterval.cpp
[62/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o -MF libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o.d -o libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o -c ../alignment/files/BaseSequenceIO.cpp
[63/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o -MF libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o.d -o libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o -c ../alignment/files/CCSIterator.cpp
[64/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o -MF libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o.d -o libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o -c ../alignment/files/FragmentCCSIterator.cpp
[65/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o -c ../pbdata/FASTASequence.cpp
[66/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o -MF libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o.d -o libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o -c ../alignment/files/ReaderAgglomerate.cpp
../alignment/files/ReaderAgglomerate.cpp: In member function ‘int ReaderAgglomerate::Initialize(bool, bool)’:
../alignment/files/ReaderAgglomerate.cpp:267:37: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=]
  267 |             } catch (std::exception e) {
      |                                     ^
In file included from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(FASTASequence&) [with T_Sequence = SMRTSequence]’:
../alignment/files/ReaderAgglomerate.cpp:360:50:   required from here
../hdf/HDFBasReader.hpp:602:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  602 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(FASTQSequence&) [with T_Sequence = SMRTSequence]’:
../alignment/files/ReaderAgglomerate.cpp:401:50:   required from here
../hdf/HDFBasReader.hpp:647:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  647 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’:
../alignment/files/ReaderAgglomerate.cpp:516:50:   required from here
../hdf/HDFBasReader.hpp:760:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  760 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNextBases(SMRTSequence&, bool) [with T_Sequence = SMRTSequence]’:
../alignment/files/ReaderAgglomerate.cpp:611:64:   required from here
../hdf/HDFBasReader.hpp:691:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  691 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../alignment/files/ReaderAgglomerate.hpp:9,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFCCSReader.hpp: In instantiation of ‘int HDFCCSReader<T_Sequence>::GetNext(T_Sequence&) [with T_Sequence = CCSSequence]’:
../alignment/files/ReaderAgglomerate.cpp:664:50:   required from here
../hdf/HDFCCSReader.hpp:270:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  270 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../alignment/files/ReaderAgglomerate.cpp:250:56:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../alignment/files/ReaderAgglomerate.cpp: In member function ‘int ReaderAgglomerate::GetNextBases(SMRTSequence&, bool)’:
../alignment/files/ReaderAgglomerate.cpp:624:81: warning: this statement may fall through [-Wimplicit-fallthrough=]
  624 |             std::cout << "ERROR! Can not GetNextBases from a BAM File." << std::endl;
      |                                                                                 ^~~~
../alignment/files/ReaderAgglomerate.cpp:626:9: note: here
  626 |         case FileType::Fourbit:
      |         ^~~~
../alignment/files/ReaderAgglomerate.cpp: In member function ‘int ReaderAgglomerate::GetNext(CCSSequence&)’:
../alignment/files/ReaderAgglomerate.cpp:669:83: warning: this statement may fall through [-Wimplicit-fallthrough=]
  669 |             std::cout << "ERROR! Could not read BamRecord as CCSSequence" << std::endl;
      |                                                                                   ^~~~
../alignment/files/ReaderAgglomerate.cpp:671:9: note: here
  671 |         case FileType::Fourbit:
      |         ^~~~
[67/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o -c ../alignment/format/CompareSequencesPrinter.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/mips64el-linux-gnuabi64/bits/c++allocator.h:33,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/allocator.h:46,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/string:41,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/locale_classes.h:40,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/ios_base.h:41,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/ios:42,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/istream:38,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/fstream:38,
                 from ../alignment/format/CompareSequencesPrinter.hpp:4,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
/usr/mips64el-linux-gnuabi64/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[68/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o -c ../alignment/format/IntervalPrinter.cpp
[69/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o -c ../alignment/format/SAMHeaderPrinter.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[70/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o -c ../alignment/format/SAMPrinter.cpp
[71/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o -c ../alignment/format/SummaryPrinter.cpp
[72/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -MF libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -c ../alignment/query/PbiFilterZmwGroupQuery.cpp
[73/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o -MF libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o -c ../alignment/query/SequentialZmwGroupQuery.cpp
[74/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_qvs_QualityValueProfile.cpp.o -MF libblasr.so.5.3.4.p/alignment_qvs_QualityValueProfile.cpp.o.d -o libblasr.so.5.3.4.p/alignment_qvs_QualityValueProfile.cpp.o -c ../alignment/qvs/QualityValueProfile.cpp
[75/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_simulator_ContextSample.cpp.o -MF libblasr.so.5.3.4.p/alignment_simulator_ContextSample.cpp.o.d -o libblasr.so.5.3.4.p/alignment_simulator_ContextSample.cpp.o -c ../alignment/simulator/ContextSample.cpp
[76/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_simulator_ContextSet.cpp.o -MF libblasr.so.5.3.4.p/alignment_simulator_ContextSet.cpp.o.d -o libblasr.so.5.3.4.p/alignment_simulator_ContextSet.cpp.o -c ../alignment/simulator/ContextSet.cpp
[77/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_simulator_LengthHistogram.cpp.o -MF libblasr.so.5.3.4.p/alignment_simulator_LengthHistogram.cpp.o.d -o libblasr.so.5.3.4.p/alignment_simulator_LengthHistogram.cpp.o -c ../alignment/simulator/LengthHistogram.cpp
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/cassert:44,
                 from ../alignment/statistics/StatUtils.hpp:5,
                 from ../alignment/simulator/CDFMap.hpp:8,
                 from ../alignment/simulator/LengthHistogram.hpp:8,
                 from ../alignment/simulator/LengthHistogram.cpp:1:
../alignment/simulator/CDFMap.hpp: In instantiation of ‘int CDFMap<T_Data>::SelectRandomValue(T_Data&) [with T_Data = int]’:
../alignment/simulator/LengthHistogram.cpp:27:94:   required from here
../alignment/simulator/CDFMap.hpp:37:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
   37 |     assert(cdf.size() >= 0);
      |            ~~~~~~~~~~~^~~~
[78/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_simulator_QualitySample.cpp.o -MF libblasr.so.5.3.4.p/alignment_simulator_QualitySample.cpp.o.d -o libblasr.so.5.3.4.p/alignment_simulator_QualitySample.cpp.o -c ../alignment/simulator/QualitySample.cpp
[79/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_statistics_cdfs.cpp.o -MF libblasr.so.5.3.4.p/alignment_statistics_cdfs.cpp.o.d -o libblasr.so.5.3.4.p/alignment_statistics_cdfs.cpp.o -c ../alignment/statistics/cdfs.cpp
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[102/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o -c ../pbdata/reads/HoleXY.cpp
[103/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o -c ../pbdata/reads/PulseBaseCommon.cpp
[104/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o -c ../pbdata/reads/PulseFile.cpp
[105/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o -c ../pbdata/reads/ReadType.cpp
[106/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o -c ../pbdata/reads/RegionAnnotation.cpp
[107/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o -c ../pbdata/reads/RegionAnnotations.cpp
../pbdata/reads/RegionAnnotations.cpp: In constructor ‘RegionAnnotations::RegionAnnotations(UInt, const std::vector<RegionAnnotation>&, const std::vector<T_RegionType>&)’:
../pbdata/reads/RegionAnnotations.cpp:14:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   14 |     for (auto annotation : annotations) {
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<RegionAnnotation> RegionAnnotations::RegionAnnotationsOfType(RegionType) const’:
../pbdata/reads/RegionAnnotations.cpp:37:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   37 |         for (auto ra : table_)
      |                        ^~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘RegionAnnotation RegionAnnotations::TheHQRegion() const’:
../pbdata/reads/RegionAnnotations.cpp:65:22: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   65 |         return hqs_[0];
      |                      ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
In file included from ../pbdata/reads/RegionAnnotations.cpp:3:
../pbdata/PrettyException.hpp:8:5: warning: macro expands to multiple statements [-Wmultistatement-macros]
    8 |     std::cerr << "Exception in file '" << __FILE__ << "', on line '" << __LINE__                   \
      |     ^~~
../pbdata/reads/RegionAnnotations.cpp:67:9: note: in expansion of macro ‘BLASR_THROW’
   67 |         BLASR_THROW("Zmw has more than one HQRegion");
      |         ^~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp:66:5: note: some parts of macro expansion are not guarded by this ‘else’ clause
   66 |     else
      |     ^~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::AdapterIntervals() const’:
../pbdata/reads/RegionAnnotations.cpp:84:34: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   84 |     for (auto adapter : Adapters()) {
      |                                  ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::SubreadIntervals(DNALength, bool, bool) const’:
../pbdata/reads/RegionAnnotations.cpp:102:42: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  102 |             for (auto adapter : Adapters()) {
      |                                          ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp:121:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  121 |     for (auto insert : inserts) {
      |                        ^~~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
[108/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o -c ../pbdata/reads/RegionTable.cpp
[109/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o -c ../pbdata/reads/RegionTypeMap.cpp
[110/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o -c ../pbdata/reads/ScanData.cpp
[111/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o -c ../pbdata/reads/ZMWGroupEntry.cpp
[112/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o -MF libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o -c ../pbdata/saf/AlnGroup.cpp
[113/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o -MF libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o -c ../pbdata/saf/MovieInfo.cpp
[114/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o -MF libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o -c ../pbdata/saf/RefGroup.cpp
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[116/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o -MF libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o -c ../pbdata/sam/ReadGroup.cpp
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[118/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o -MF libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o -c ../pbdata/sam/SAMAlignment.cpp
[119/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o -MF libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o -c ../pbdata/sam/SAMHeader.cpp
[120/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o -MF libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o -c ../pbdata/sam/SAMKeywordValuePair.cpp
[121/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o -MF libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o -c ../pbdata/utils/BitUtils.cpp
[122/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o -MF libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o -c ../pbdata/utils/SMRTReadUtils.cpp
[123/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o -MF libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o -c ../pbdata/utils/SMRTTitle.cpp
[124/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o -MF libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o -c ../pbdata/utils/TimeUtils.cpp
[125/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o -MF libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o -c ../pbdata/BlasrFASTAReader.cpp
In file included from ../pbdata/FASTAReader.hpp:7,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
../pbdata/FASTASequence.hpp: In instantiation of ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = FASTASequence; _Args = {FASTASequence}]’:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_uninitialized.h:91:18:   required from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<FASTASequence*>; _ForwardIterator = FASTASequence*; bool _TrivialValueTypes = false]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_uninitialized.h:150:15:   required from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<FASTASequence*>; _ForwardIterator = FASTASequence*]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_uninitialized.h:325:37:   required from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<FASTASequence*>; _ForwardIterator = FASTASequence*; _Tp = FASTASequence]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_uninitialized.h:347:2:   required from ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = std::allocator<FASTASequence>]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/vector.tcc:659:48:   required from ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::size_type = long unsigned int]’
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:940:4:   required from ‘void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::size_type = long unsigned int]’
../pbdata/BlasrFASTAReader.cpp:441:26:   required from here
../pbdata/FASTASequence.hpp:19:7: warning: implicitly-declared ‘constexpr DNASequence::DNASequence(const DNASequence&)’ is deprecated [-Wdeprecated-copy]
   19 | class FASTASequence : public DNASequence
      |       ^~~~~~~~~~~~~
In file included from ../pbdata/FASTASequence.hpp:13,
                 from ../pbdata/FASTAReader.hpp:7,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
../pbdata/DNASequence.hpp:51:18: note: because ‘DNASequence’ has user-provided ‘DNASequence& DNASequence::operator=(const DNASequence&)’
   51 |     DNASequence &operator=(const DNASequence &rhs);
      |                  ^~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/alloc_traits.h:33,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/ext/alloc_traits.h:34,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/bits/basic_string.h:40,
                 from /usr/mips64el-linux-gnuabi64/include/c++/10/string:55,
                 from ../pbdata/FASTAReader.hpp:5,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_construct.h:109:7: note: synthesized method ‘constexpr FASTASequence::FASTASequence(const FASTASequence&)’ first required here
  109 |     { ::new(static_cast<void*>(__p)) _Tp(std::forward<_Args>(__args)...); }
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[126/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o -MF libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o -c ../pbdata/BlasrFASTQReader.cpp
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[135/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o -c ../pbdata/PackedDNASequence.cpp
[136/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o -MF libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o -c ../pbdata/ReverseCompressIndex.cpp
[137/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o -c ../pbdata/SMRTSequence.cpp
In file included from ../pbdata/SMRTSequence.cpp:3:
../pbdata/SMRTSequence.cpp: In member function ‘float SMRTSequence::HQRegionSnr(char) const’:
../pbdata/PrettyException.hpp:8:5: warning: macro expands to multiple statements [-Wmultistatement-macros]
    8 |     std::cerr << "Exception in file '" << __FILE__ << "', on line '" << __LINE__                   \
      |     ^~~
../pbdata/SMRTSequence.cpp:329:9: note: in expansion of macro ‘BLASR_THROW’
  329 |         BLASR_THROW("Base must be in A, C, G, T");
      |         ^~~~~~~~~~~
../pbdata/SMRTSequence.cpp:328:5: note: some parts of macro expansion are not guarded by this ‘else’ clause
  328 |     else
      |     ^~~~
../pbdata/SMRTSequence.cpp: In member function ‘void SMRTSequence::MadeFromSubreadsAsPolymerase(const std::vector<SMRTSequence>&)’:
../pbdata/SMRTSequence.cpp:353:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  353 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
../pbdata/SMRTSequence.cpp:378:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  378 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
[138/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o -MF libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o -c ../pbdata/StringUtils.cpp
[139/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -c ../unittest/hdf/HDFUtils_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../unittest/hdf/HDFUtils_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../unittest/hdf/HDFUtils_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[140/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -c ../unittest/hdf/HDFBasReader_gtest.cpp
In file included from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’:
../unittest/hdf/HDFBasReader_gtest.cpp:47:27:   required from here
../hdf/HDFBasReader.hpp:760:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  760 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(FASTQSequence&) [with T_Sequence = SMRTSequence]’:
../hdf/HDFBasReader.hpp:726:40:   required from ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’
../unittest/hdf/HDFBasReader_gtest.cpp:47:27:   required from here
../hdf/HDFBasReader.hpp:647:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  647 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFBasReader_gtest.cpp:33:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[141/187] /usr/bin/mips64el-linux-gnuabi64-g++  -o libblasr.so.5.3.4 libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.4.p/hdf_HDFData.cpp.o libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.4.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.4.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.4.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.4.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.4.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.4.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.4.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.4.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.4.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.4.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.4.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.4.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.4.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.4.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.4.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.4.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.4.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.4.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.4.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.4.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.4.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.4.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.4.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.4.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.4.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.4.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.4.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.4.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.4.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.4.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.4.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.4.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.4.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.4.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libblasr.so.5.3.4 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wl,-z,relro -Wl,-z,now /usr/lib/mips64el-linux-gnuabi64/libpbbam.so /usr/lib/mips64el-linux-gnuabi64/libpbcopper.so /usr/lib/mips64el-linux-gnuabi64/libz.so /usr/lib/mips64el-linux-gnuabi64/libhts.so -lrt /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5_cpp.so /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5_hl.so /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5.so -Wl,--end-group
[142/187] /usr/bin/meson --internal symbolextractor /<<PKGBUILDDIR>>/obj-mips64el-linux-gnuabi64 libblasr.so.5.3.4 libblasr.so.5.3.4 libblasr.so.5.3.4.p/libblasr.so.5.3.4.symbols --cross-host=linux
[143/187] rm -f libblasr.a && /usr/bin/mips64el-linux-gnuabi64-ar csrD libblasr.a libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.4.p/hdf_HDFData.cpp.o libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.4.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.4.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.4.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.4.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.4.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.4.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.4.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.4.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.4.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.4.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.4.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.4.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.4.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.4.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.4.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.4.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.4.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.4.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.4.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.4.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.4.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.4.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.4.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.4.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.4.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.4.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.4.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.4.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.4.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.4.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.4.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.4.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.4.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.4.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o
[144/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[145/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -c ../unittest/pbdata/metagenome/TitleTable_gtest.cpp
[146/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -c ../unittest/hdf/HDFScanDataReader_gtest.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[147/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[148/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -c ../unittest/alignment/files/CCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/CCSIterator_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/CCSIterator_gtest.cpp:23:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[149/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -c ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[150/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMPrinter_gtest.cpp
[151/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMHeaderPrinter_gtest.cpp
[152/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/CmpIndexedStringTable_gtest.cpp
[153/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/AlignmentMap_gtest.cpp
[154/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/SequentialZmwGroupQuery_gtest.cpp
[155/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/PbiFilterZmwGroupQuery_gtest.cpp
[156/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -c ../unittest/alignment/utils/FileUtils_gtest.cpp
[157/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -c ../unittest/alignment/utils/RangeUtils_gtest.cpp
[158/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -c ../unittest/alignment/utils/RegionUtils_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[159/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -c ../unittest/hdf/HDFScanDataWriter_gtest.cpp
[160/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -c ../unittest/hdf/HDFCCSReader_gtest.cpp
In file included from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFCCSReader.hpp: In instantiation of ‘int HDFCCSReader<T_Sequence>::GetNext(T_Sequence&) [with T_Sequence = CCSSequence]’:
../unittest/hdf/HDFCCSReader_gtest.cpp:45:27:   required from here
../hdf/HDFCCSReader.hpp:270:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  270 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’:
../hdf/HDFCCSReader.hpp:217:51:   required from ‘int HDFCCSReader<T_Sequence>::GetNext(T_Sequence&) [with T_Sequence = CCSSequence]’
../unittest/hdf/HDFCCSReader_gtest.cpp:45:27:   required from here
../hdf/HDFBasReader.hpp:760:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  760 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(FASTQSequence&) [with T_Sequence = SMRTSequence]’:
../hdf/HDFBasReader.hpp:726:40:   required from ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’
../hdf/HDFCCSReader.hpp:217:51:   required from ‘int HDFCCSReader<T_Sequence>::GetNext(T_Sequence&) [with T_Sequence = CCSSequence]’
../unittest/hdf/HDFCCSReader_gtest.cpp:45:27:   required from here
../hdf/HDFBasReader.hpp:647:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  647 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFCCSReader.hpp:93:57:   required from ‘int HDFCCSReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFCCSReader_gtest.cpp:39:5:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[161/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -c ../unittest/hdf/HDFZMWReader_gtest.cpp
[162/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -c ../unittest/hdf/HDFPlsReader_gtest.cpp
In file included from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFPlsReader.hpp: In member function ‘int HDFPlsReader::GetNextFlattenedToBase(SMRTSequence&, int*)’:
../hdf/HDFPlsReader.hpp:549:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  549 |         } catch (DataSetIException e) {
      |                                    ^
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[163/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -c ../unittest/hdf/HDF2DArray_gtest.cpp
[164/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -c ../unittest/pbdata/saf/RefInfo_gtest.cpp
[165/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -c ../unittest/pbdata/saf/MovieInfo_gtest.cpp
[166/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -c ../unittest/pbdata/saf/AlnGroup_gtest.cpp
[167/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -c ../unittest/pbdata/utils/SMRTTitle_gtest.cpp
[168/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -c ../unittest/pbdata/qvs/QualityValueVector_gtest.cpp
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[170/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -c ../unittest/pbdata/reads/ReadType_gtest.cpp
[171/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -c ../unittest/pbdata/reads/RegionAnnotations_gtest.cpp
[172/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -c ../unittest/pbdata/ScanData_gtest.cpp
[173/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -c ../unittest/pbdata/StringUtils_gtest.cpp
[174/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -c ../unittest/pbdata/SMRTSequence_gtest.cpp
../unittest/pbdata/SMRTSequence_gtest.cpp: In function ‘SMRTSequence _make_a_smrt_read_(const string&, const UInt&, DNALength, DNALength, const string&, bool, bool, bool, int, int, char, int, char)’:
../unittest/pbdata/SMRTSequence_gtest.cpp:66:12: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
   66 |     return smrt;
      |            ^~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymerase_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:133:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:133:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletion_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:192:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:192:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletionNoSubstitution_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:246:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:246:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/mips64el-linux-gnuabi64/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/mips64el-linux-gnuabi64/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
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[180/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -c ../unittest/pbdata/FASTQReader_gtest.cpp
[181/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -c ../unittest/pbdata/SeqUtils_gtest.cpp
[182/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -c ../unittest/pbdata/CCSSequence_gtest.cpp
[183/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -c ../unittest/pbdata/utils_gtest.cpp
[184/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -c ../unittest/pbdata/FASTQSequence_gtest.cpp
[185/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -c ../unittest/pbdata/DNASequence_gtest.cpp
[186/187] /usr/bin/mips64el-linux-gnuabi64-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -c ../unittest/pbdata/FASTAReader_gtest.cpp
[187/187] /usr/bin/mips64el-linux-gnuabi64-g++  -o unittest/libblasr_unittest unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wl,-z,relro -Wl,-z,now -Wl,--start-group libblasr.so.5.3.4 /usr/lib/mips64el-linux-gnuabi64/libpbbam.so /usr/lib/mips64el-linux-gnuabi64/libpbcopper.so /usr/lib/mips64el-linux-gnuabi64/libz.so /usr/lib/mips64el-linux-gnuabi64/libhts.so -lrt /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5_cpp.so /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5_hl.so /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5.so /usr/lib/mips64el-linux-gnuabi64/libgtest_main.a -lpthread /usr/lib/mips64el-linux-gnuabi64/libgtest.a -Wl,--end-group '-Wl,-rpath,$ORIGIN/..' -Wl,-rpath-link,/<<PKGBUILDDIR>>/obj-mips64el-linux-gnuabi64/
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
	cd obj-mips64el-linux-gnuabi64 && DESTDIR=/<<BUILDDIR>>/pbseqlib-5.3.4\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install
[0/1] Installing files.
Installing libblasr.so.5.3.4 to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/mips64el-linux-gnuabi64
Installing libblasr.a to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/mips64el-linux-gnuabi64
Installing /<<PKGBUILDDIR>>/obj-mips64el-linux-gnuabi64/LibBlasrConfig.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollection.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollectionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAtom.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAttributable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBaseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBaxWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCCSReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpExperimentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRefAlignmentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRootGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpSupportedFields.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCommonFG.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFConfig.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFFileLogGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFMovieInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFNewBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseDataFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRefGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRefInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFSentinalFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFSMRTSequenceReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFWriteBuffer.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFWriterBase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWMetricsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPColumn.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPFragment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineGuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineKBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentFormats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/BaseScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ExtendAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/FullQVAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaper.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaperImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/IDSScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/KBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/OneGapAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/QualityValueScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ScoreMatrices.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/StringToScoreMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpoint.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpointImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearch.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearchImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ClusterProbability.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/Coordinate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChain.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChainImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISQValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTree.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchors.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/compare/CompareStrings.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/compare
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/DifferenceCovers.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/Karkkainen.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/LightweightSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/MultikeyQuicksort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/qsufsort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/bwt/BWT.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/Occ.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/PackedHash.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/Pos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignedPair.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentCandidate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentContext.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentGapList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Alignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentStats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/ByteAlignment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpIndexedStringTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpReadGroupTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpRefSeqTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/FilterCriteria.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Path.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMQVConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/AnchorParameters.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/ClusterList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/MatchPos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/WeightedInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/files/BaseSequenceIO.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/CCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/FragmentCCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerateImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/IntervalPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMHeaderPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/StickAlignmentPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SummaryPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/VulgarPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/XMLPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/ipc/SharedMemoryAllocator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/ipc
Installing /<<PKGBUILDDIR>>/alignment/query/PbiFilterZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query
Installing /<<PKGBUILDDIR>>/alignment/query/SequentialZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query
Installing /<<PKGBUILDDIR>>/alignment/qvs/QualityValueProfile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/qvs
Installing /<<PKGBUILDDIR>>/alignment/simulator/CDFMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextOutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/LengthHistogram.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleListSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/QualitySample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/statistics/AnchorDistributionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/cdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/LookupAnchorDistribution.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/pdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulatorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/LCPTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SharedSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/ssort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArrayTypes.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/tuples/BaseTuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/CompressedDNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/CountedTuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTableImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/tuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMask.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatching.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatchingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleOperations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleTranslations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/utils/FileOfFileNames.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/FileUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/LogUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/PhredUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RangeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/SimpleXMLUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/MappingMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignmentImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment
Installing /<<PKGBUILDDIR>>/pbdata/amos/AfgBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/amos
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MetricField.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/Matrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/MatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/FindRandomSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/TitleTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/reads/AcqParams.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/HoleXY.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseBaseCommon.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadType.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotation.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotations.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTypeMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ScanData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ZMWGroupEntry.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/MovieInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/CigarString.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReadGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReferenceSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMFlag.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMHeader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePair.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePairImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReaderImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/utils/BitUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTReadUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTTitle.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/TimeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/CCSSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/ChangeListID.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CommandLineParser.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Compare4BitCompressed.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/defs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/DNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Enumerations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTAReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTQReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTQSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/GFFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/MD5Utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/MD5UtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/NucConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PacBioDefs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PackedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PrettyException.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/ReverseCompressIndex.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SMRTSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/StringUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Types.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/utilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/VectorUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/obj-mips64el-linux-gnuabi64/meson-private/libblasr.pc to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -p libpbdata-dev usr/include/libblasr/pbdata		usr/include/pbseq
dh_install -p libpbihdf-dev usr/include/libblasr/hdf		usr/include/pbseq
dh_install -p libblasr-dev  usr/include/libblasr/alignment	usr/include/pbseq
find -L debian/*/usr/include/ -type f -regextype posix-egrep -not -regex '.*(hpp|h)$' -delete
find debian/*/usr/include/ -name "*.mk" -delete
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --exclude-la \
	    --override s/libhdf5_serial_cpp103-dev/libhdf5-dev/ \
	    --override s/libpbbam1.6.0-dev/libpbbam-dev/ \
	    --override s/libpbcopper1.8.0-dev/libpbcopper-dev/ \
	    --movedev debian/tmp/usr/include/libblasr usr/include \
	    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/mips64el-linux-gnuabi64/pkgconfig \
	    debian/tmp/usr/lib/*/libblasr.so
Library package automatic movement utility
 --> libhdf5-dev package exists.
 --> libpbbam-dev package exists.
 --> libpbcopper-dev package exists.
set -e
install -d -m 755 debian/libblasr-dev/usr/lib/mips64el-linux-gnuabi64
install -d -m 755 debian/libblasr5.3.4/usr/lib/mips64el-linux-gnuabi64
mv debian/tmp/usr/lib/mips64el-linux-gnuabi64/libblasr.a debian/libblasr-dev/usr/lib/mips64el-linux-gnuabi64
mv debian/tmp/usr/lib/mips64el-linux-gnuabi64/libblasr.so debian/libblasr-dev/usr/lib/mips64el-linux-gnuabi64
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libblasr.so.5.3.4 debian/libblasr5.3.4/usr/lib/mips64el-linux-gnuabi64
PKGDEV=libblasr-dev
PKGSHL=libblasr5.3.4
install -d -m 755 debian/libblasr-dev/usr/include
mv debian/tmp/usr/include/libblasr debian/libblasr-dev/usr/include
install -d -m 755 debian/libblasr-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libblasr-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig
mv debian/libblasr-dev/usr/include/libblasr debian/libblasr-dev/usr/include/pbseq
mv debian/libblasr-dev/usr/include/pbseq/libblasr/LibBlasrConfig.h debian/libblasr-dev/usr/include/pbseq
dh_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a -a
   dh_strip -a -a
   dh_makeshlibs -a -a
   dh_shlibdeps -a -a
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package libblasr-dev: substitution variable ${devlibs:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libblasr-dev' in '../libblasr-dev_5.3.4+dfsg-3_mips64el.deb'.
dpkg-deb: building package 'libblasr5.3.4' in '../libblasr5.3.4_5.3.4+dfsg-3_mips64el.deb'.
dpkg-deb: building package 'libblasr5.3.4-dbgsym' in '../libblasr5.3.4-dbgsym_5.3.4+dfsg-3_mips64el.deb'.
dpkg-deb: building package 'libpbseq' in '../libpbseq_5.3.4+dfsg-3_mips64el.deb'.
dpkg-deb: building package 'libpbseq-dev' in '../libpbseq-dev_5.3.4+dfsg-3_mips64el.deb'.
dpkg-deb: building package 'libpbdata-dev' in '../libpbdata-dev_5.3.4+dfsg-3_mips64el.deb'.
dpkg-deb: building package 'libpbihdf-dev' in '../libpbihdf-dev_5.3.4+dfsg-3_mips64el.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../pbseqlib_5.3.4+dfsg-3_mips64el.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-01T14:32:13Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


pbseqlib_5.3.4+dfsg-3_mips64el.changes:
---------------------------------------

Format: 1.8
Date: Mon, 16 Nov 2020 13:47:40 +0100
Source: pbseqlib
Binary: libblasr-dev libblasr5.3.4 libblasr5.3.4-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev
Built-For-Profiles: cross nocheck
Architecture: mips64el
Version: 5.3.4+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libblasr-dev - tools for aligning PacBio reads to target sequences (development
 libblasr5.3.4 - tools for aligning PacBio reads to target sequences
 libpbdata-dev - tools for handling PacBio sequences (development files)
 libpbihdf-dev - tools for handling PacBio hdf5 files (development files)
 libpbseq   - library for analyzing PacBio sequencing data
 libpbseq-dev - library for analyzing PacBio sequencing data (development files)
Changes:
 pbseqlib (5.3.4+dfsg-3) unstable; urgency=medium
 .
   * Install LibBlasrConfig.h at correct location
Checksums-Sha1:
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 b67bb4d192b1475508d963a7a102c2680b27eab0 1009868 libblasr5.3.4_5.3.4+dfsg-3_mips64el.deb
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 b520cdc7e7f83d717da960a5fd2c86255236d43f 5204 libpbseq_5.3.4+dfsg-3_mips64el.deb
 0173bad8716147ba9b3ddad1356056be4ee41141 9095 pbseqlib_5.3.4+dfsg-3_mips64el.buildinfo
Checksums-Sha256:
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 f6c48b72c0d73d0be68d5fbfd432dc758bf71b247a747835a2bbccf31c009d63 8300116 libblasr5.3.4-dbgsym_5.3.4+dfsg-3_mips64el.deb
 99e55382fdaf4dc8e5b921c30640bf53662945f007b967f5887cda2b40cab43e 1009868 libblasr5.3.4_5.3.4+dfsg-3_mips64el.deb
 f0dd522fa416b08add0b274753396da94c9efda6c192b3e05b6bf98b937b2ac6 40972 libpbdata-dev_5.3.4+dfsg-3_mips64el.deb
 a260cf68df3706c85cf02a98a2115d48103f127c41b5b2d2b007adac4950c9b8 47456 libpbihdf-dev_5.3.4+dfsg-3_mips64el.deb
 f5f53187da1399c6938fe96a323ffbdd9d90931070a1eaca828f170eb5ff9c37 5224 libpbseq-dev_5.3.4+dfsg-3_mips64el.deb
 20a93549f405e5d89a1debfe7362917e7d6f908b1a1789f0e3f53ea0f73ac167 5204 libpbseq_5.3.4+dfsg-3_mips64el.deb
 745341878cc29b81e5c9644d831ffba4d77f709d098fb5f2332530150e2363c0 9095 pbseqlib_5.3.4+dfsg-3_mips64el.buildinfo
Files:
 6e892e97f9e945d9668472df70f83245 2127768 libdevel optional libblasr-dev_5.3.4+dfsg-3_mips64el.deb
 2e9a5bf19c0468c7184fe585d7784a75 8300116 debug optional libblasr5.3.4-dbgsym_5.3.4+dfsg-3_mips64el.deb
 54b3c2ace7600e9c84764dbddd61cdc9 1009868 libs optional libblasr5.3.4_5.3.4+dfsg-3_mips64el.deb
 89c8ae463bccde4d6884a38d15a3d5b3 40972 libdevel optional libpbdata-dev_5.3.4+dfsg-3_mips64el.deb
 8c18bc9278de7ff71bc9e53a04e986dc 47456 libdevel optional libpbihdf-dev_5.3.4+dfsg-3_mips64el.deb
 009307b3a829f10e3f1c06ff631d167b 5224 libdevel optional libpbseq-dev_5.3.4+dfsg-3_mips64el.deb
 c57f1edc61582c42e18b552d39d7d974 5204 science optional libpbseq_5.3.4+dfsg-3_mips64el.deb
 0c74f289d95210e01fb47232f6f07814 9095 science optional pbseqlib_5.3.4+dfsg-3_mips64el.buildinfo

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: pbseqlib
Binary: libblasr-dev libblasr5.3.4 libblasr5.3.4-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev
Architecture: mips64el
Version: 5.3.4+dfsg-3
Checksums-Md5:
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Tue, 01 Dec 2020 14:32:12 +0000
Build-Path: /<<PKGBUILDDIR>>
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Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1605530860"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libblasr-dev_5.3.4+dfsg-3_mips64el.deb
--------------------------------------

 new Debian package, version 2.0.
 size 2127768 bytes: control archive=9476 bytes.
     802 bytes,    19 lines      control              
   45430 bytes,   467 lines      md5sums              
 Package: libblasr-dev
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: mips64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 17105
 Depends: libblasr5.3.4 (= 5.3.4+dfsg-3), libpbdata-dev (= 5.3.4+dfsg-3)
 Breaks: libblasr (<< 5.3.3)
 Replaces: libblasr (<< 5.3.3)
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the alignment
  sublibrary.

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/
-rw-r--r-- root/root       130 2020-11-16 12:47 ./usr/include/pbseq/LibBlasrConfig.h
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/
-rw-r--r-- root/root      2868 2020-02-24 11:17 ./usr/include/pbseq/alignment/MappingMetrics.hpp
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/algorithms/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/algorithms/alignment/
-rw-r--r-- root/root     21547 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp
-rw-r--r-- root/root     14470 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp
-rw-r--r-- root/root       253 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentFormats.hpp
-rw-r--r-- root/root      5585 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp
-rw-r--r-- root/root     18470 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
-rw-r--r-- root/root       446 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/BaseScoreFunction.hpp
-rw-r--r-- root/root      1664 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
-rw-r--r-- root/root      4641 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
-rw-r--r-- root/root     14955 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/ExtendAlign.hpp
-rw-r--r-- root/root      5694 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/FullQVAlign.hpp
-rw-r--r-- root/root       737 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/GraphPaper.hpp
-rw-r--r-- root/root      4795 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/GraphPaperImpl.hpp
-rw-r--r-- root/root     21551 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp
-rw-r--r-- root/root      5922 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/IDSScoreFunction.hpp
-rw-r--r-- root/root     12931 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp
-rw-r--r-- root/root     12739 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp
-rw-r--r-- root/root      2595 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/QualityValueScoreFunction.hpp
-rw-r--r-- root/root      2536 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp
-rw-r--r-- root/root     26297 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp
-rw-r--r-- root/root       508 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/SWAlign.hpp
-rw-r--r-- root/root     15288 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/SWAlignImpl.hpp
-rw-r--r-- root/root       378 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/ScoreMatrices.hpp
-rw-r--r-- root/root       212 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/StringToScoreMatrix.hpp
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/
-rw-r--r-- root/root       432 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSort.hpp
-rw-r--r-- root/root       509 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp
-rw-r--r-- root/root      7162 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h
-rw-r--r-- root/root       502 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPColumn.hpp
-rw-r--r-- root/root      2931 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPFragment.hpp
-rw-r--r-- root/root      1120 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSet.hpp
-rw-r--r-- root/root      2262 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp
-rw-r--r-- root/root      1377 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp
-rw-r--r-- root/root     10646 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp
-rw-r--r-- root/root      1000 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/algorithms/anchoring/
-rw-r--r-- root/root      1097 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/BWTSearch.hpp
-rw-r--r-- root/root       484 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/BWTSearchImpl.hpp
-rw-r--r-- root/root      1601 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpoint.hpp
-rw-r--r-- root/root      2371 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpointImpl.hpp
-rw-r--r-- root/root       361 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/ClusterProbability.hpp
-rw-r--r-- root/root      1194 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/Coordinate.hpp
-rw-r--r-- root/root      5936 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/FindMaxInterval.hpp
-rw-r--r-- root/root     33971 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp
-rw-r--r-- root/root      1411 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/GlobalChain.hpp
-rw-r--r-- root/root      7592 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/GlobalChainImpl.hpp
-rw-r--r-- root/root       743 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValue.hpp
-rw-r--r-- root/root      5054 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValueImpl.hpp
-rw-r--r-- root/root      1517 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightor.hpp
-rw-r--r-- root/root      4041 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/
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lrwxrwxrwx root/root         0 2020-11-16 12:47 ./usr/lib/mips64el-linux-gnuabi64/libblasr.so -> libblasr.so.5.3.4
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libblasr-dev/
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-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libblasr-dev/copyright


libblasr5.3.4-dbgsym_5.3.4+dfsg-3_mips64el.deb
----------------------------------------------

 new Debian package, version 2.0.
 size 8300116 bytes: control archive=552 bytes.
     403 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: libblasr5.3.4-dbgsym
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Auto-Built-Package: debug-symbols
 Architecture: mips64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 8587
 Depends: libblasr5.3.4 (= 5.3.4+dfsg-3)
 Section: debug
 Priority: optional
 Description: debug symbols for libblasr5.3.4
 Build-Ids: deea8bbce61711076a5b9c527db20502f2da1645

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/debug/.build-id/de/
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-11-16 12:47 ./usr/share/doc/libblasr5.3.4-dbgsym -> libblasr5.3.4


libblasr5.3.4_5.3.4+dfsg-3_mips64el.deb
---------------------------------------

 new Debian package, version 2.0.
 size 1009868 bytes: control archive=960 bytes.
     782 bytes,    16 lines      control              
     238 bytes,     3 lines      md5sums              
      45 bytes,     1 lines      shlibs               
      67 bytes,     2 lines      triggers             
 Package: libblasr5.3.4
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: mips64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3500
 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libhdf5-103-1, libhdf5-cpp-103-1 (>= 1.10.5), libpbbam1.6.0 (>= 1.6.0+dfsg), libpbcopper1.8.0 (>= 1.8.0+dfsg), libstdc++6 (>= 9)
 Section: libs
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the alignment sublibrary.

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/mips64el-linux-gnuabi64/
-rw-r--r-- root/root   3566448 2020-11-16 12:47 ./usr/lib/mips64el-linux-gnuabi64/libblasr.so.5.3.4
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libblasr5.3.4/
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-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libblasr5.3.4/copyright


libpbdata-dev_5.3.4+dfsg-3_mips64el.deb
---------------------------------------

 new Debian package, version 2.0.
 size 40972 bytes: control archive=3032 bytes.
     677 bytes,    17 lines      control              
    6805 bytes,    85 lines      md5sums              
 Package: libpbdata-dev
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: mips64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 227
 Depends: libpbcopper-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the pbdata
  sublibrary.

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-rw-r--r-- root/root      5024 2020-02-24 11:17 ./usr/include/pbseq/pbdata/DNASequence.hpp
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-rw-r--r-- root/root       362 2020-02-24 11:17 ./usr/include/pbseq/pbdata/SeqUtils.hpp
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/pbdata/reads/
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-rw-r--r-- root/root      2809 2020-02-24 11:17 ./usr/include/pbseq/pbdata/reads/RegionAnnotations.hpp
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-rw-r--r-- root/root      1609 2020-02-24 11:17 ./usr/include/pbseq/pbdata/reads/RegionTypeMap.hpp
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-rw-r--r-- root/root       294 2020-02-24 11:17 ./usr/include/pbseq/pbdata/reads/ZMWGroupEntry.hpp
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/pbdata/saf/
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/pbdata/sam/
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-rw-r--r-- root/root       538 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/CigarString.h
-rw-r--r-- root/root       898 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/ReadGroup.hpp
-rw-r--r-- root/root      1639 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/ReferenceSequence.hpp
-rw-r--r-- root/root      2342 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/SAMAlignment.hpp
-rw-r--r-- root/root       853 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/SAMFlag.h
-rw-r--r-- root/root       420 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/SAMHeader.hpp
-rw-r--r-- root/root      1137 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/SAMKeywordValuePair.hpp
-rw-r--r-- root/root       833 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/SAMKeywordValuePairImpl.hpp
-rw-r--r-- root/root      2346 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/SAMReader.hpp
-rw-r--r-- root/root      8002 2020-02-24 11:17 ./usr/include/pbseq/pbdata/sam/SAMReaderImpl.hpp
-rw-r--r-- root/root       532 2020-02-24 11:17 ./usr/include/pbseq/pbdata/utils.hpp
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-rw-r--r-- root/root      1099 2020-02-24 11:17 ./usr/include/pbseq/pbdata/utils/SMRTTitle.hpp
-rw-r--r-- root/root       118 2020-02-24 11:17 ./usr/include/pbseq/pbdata/utils/TimeUtils.hpp
-rw-r--r-- root/root      1269 2020-02-24 11:17 ./usr/include/pbseq/pbdata/utilsImpl.hpp
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libpbdata-dev/
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libpbihdf-dev_5.3.4+dfsg-3_mips64el.deb
---------------------------------------

 new Debian package, version 2.0.
 size 47456 bytes: control archive=2132 bytes.
     671 bytes,    17 lines      control              
    4158 bytes,    55 lines      md5sums              
 Package: libpbihdf-dev
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: mips64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 329
 Depends: libhdf5-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio hdf5 files (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the hdf
  sublibrary.

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/hdf/
-rw-r--r-- root/root      5767 2020-11-16 12:47 ./usr/include/pbseq/hdf/BufferedHDF2DArray.hpp
-rw-r--r-- root/root     12469 2020-11-16 12:47 ./usr/include/pbseq/hdf/BufferedHDF2DArrayImpl.hpp
-rw-r--r-- root/root      8257 2020-11-16 12:47 ./usr/include/pbseq/hdf/BufferedHDFArray.hpp
-rw-r--r-- root/root     13360 2020-11-16 12:47 ./usr/include/pbseq/hdf/BufferedHDFArrayImpl.hpp
-rw-r--r-- root/root       970 2020-02-24 11:17 ./usr/include/pbseq/hdf/DatasetCollection.hpp
-rw-r--r-- root/root       967 2020-02-24 11:17 ./usr/include/pbseq/hdf/DatasetCollectionImpl.hpp
-rw-r--r-- root/root       653 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDF2DArray.hpp
-rw-r--r-- root/root      1129 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFAlnGroup.hpp
-rw-r--r-- root/root       481 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFAlnGroupGroup.hpp
-rw-r--r-- root/root      1125 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFAlnInfoGroup.hpp
-rw-r--r-- root/root      2361 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFArray.hpp
-rw-r--r-- root/root      5816 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFAtom.hpp
-rw-r--r-- root/root       488 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFAttributable.hpp
-rw-r--r-- root/root     41832 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFBasReader.hpp
-rw-r--r-- root/root     13629 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFBasWriter.hpp
-rw-r--r-- root/root      6346 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFBaseCallsWriter.hpp
-rw-r--r-- root/root      3471 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFBaxWriter.hpp
-rw-r--r-- root/root     11599 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCCSReader.hpp
-rw-r--r-- root/root      1002 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpData.hpp
-rw-r--r-- root/root      2463 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpExperimentGroup.hpp
-rw-r--r-- root/root     37131 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpFile.hpp
-rw-r--r-- root/root     29734 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpReader.hpp
-rw-r--r-- root/root      4075 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpRefAlignmentGroup.hpp
-rw-r--r-- root/root      2186 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpRootGroup.hpp
-rw-r--r-- root/root       226 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpSupportedFields.hpp
-rw-r--r-- root/root       128 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCommonFG.hpp
-rw-r--r-- root/root       174 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFConfig.hpp
-rw-r--r-- root/root      1465 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFData.hpp
-rw-r--r-- root/root       733 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFFile.hpp
-rw-r--r-- root/root      1851 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFFileLogGroup.hpp
-rw-r--r-- root/root       703 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFGroup.hpp
-rw-r--r-- root/root      2262 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFMovieInfoGroup.hpp
-rw-r--r-- root/root       856 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFNewBasReader.hpp
-rw-r--r-- root/root     23134 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFPlsReader.hpp
-rw-r--r-- root/root      6703 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFPlsWriter.hpp
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-rw-r--r-- root/root      1795 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFPulseDataFile.hpp
-rw-r--r-- root/root      3358 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFPulseWriter.hpp
-rw-r--r-- root/root      1920 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFRefGroupGroup.hpp
-rw-r--r-- root/root      3006 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFRefInfoGroup.hpp
-rw-r--r-- root/root      1333 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFRegionTableReader.hpp
-rw-r--r-- root/root      4108 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFRegionTableWriter.hpp
-rw-r--r-- root/root      1923 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFRegionsWriter.hpp
-rw-r--r-- root/root      2167 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFSMRTSequenceReader.hpp
-rw-r--r-- root/root      3280 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFScanDataReader.hpp
-rw-r--r-- root/root      2330 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFScanDataWriter.hpp
-rw-r--r-- root/root       484 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFSentinalFile.hpp
-rw-r--r-- root/root      1599 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFUtils.hpp
-rw-r--r-- root/root       928 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFWriteBuffer.hpp
-rw-r--r-- root/root      5105 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFWriterBase.hpp
-rw-r--r-- root/root      2023 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFZMWMetricsWriter.hpp
-rw-r--r-- root/root       991 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFZMWReader.hpp
-rw-r--r-- root/root      3966 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFZMWWriter.hpp
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libpbihdf-dev/
-rw-r--r-- root/root      1960 2020-11-16 12:47 ./usr/share/doc/libpbihdf-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libpbihdf-dev/copyright


libpbseq-dev_5.3.4+dfsg-3_mips64el.deb
--------------------------------------

 new Debian package, version 2.0.
 size 5224 bytes: control archive=764 bytes.
     756 bytes,    16 lines      control              
     152 bytes,     2 lines      md5sums              
 Package: libpbseq-dev
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: mips64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 13
 Depends: libpbdata-dev (= 5.3.4+dfsg-3), libpbihdf-dev (= 5.3.4+dfsg-3), libblasr-dev (= 5.3.4+dfsg-3)
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component development files.

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libpbseq-dev/
-rw-r--r-- root/root      1960 2020-11-16 12:47 ./usr/share/doc/libpbseq-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libpbseq-dev/copyright


libpbseq_5.3.4+dfsg-3_mips64el.deb
----------------------------------

 new Debian package, version 2.0.
 size 5204 bytes: control archive=744 bytes.
     667 bytes,    16 lines      control              
     144 bytes,     2 lines      md5sums              
 Package: libpbseq
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: mips64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 13
 Depends: libblasr5.3.4 (= 5.3.4+dfsg-3)
 Section: science
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component shared libraries.

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libpbseq/
-rw-r--r-- root/root      1960 2020-11-16 12:47 ./usr/share/doc/libpbseq/changelog.Debian.gz
-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libpbseq/copyright


lintian
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  libtext-xslate-perl libtime-duration-perl libtime-moment-perl
  libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian
  lzip lzop patchutils sbuild-build-depends-lintian-dummy:mips64el t1utils
  unzip
0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded.
Need to get 6507 kB of archives.
After this operation, 19.7 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b4 [71.9 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b6 [38.1 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.25-1+b1 [129 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1 [18.9 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1 [14.2 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b6 [63.3 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1 [11.4 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4+b1 [38.8 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1 [12.3 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1 [21.8 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012000-1 [348 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB]
Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.05-1 [90.3 kB]
Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB]
Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB]
Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB]
Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB]
Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB]
debconf: delaying package configuration, since apt-utils is not installed
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I: Lintian run was successful.

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| Post Build                                                                   |
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| Cleanup                                                                      |
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| Summary                                                                      |
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Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 421472
Build-Time: 482
Distribution: unstable
Foreign Architectures: mips64el
Host Architecture: mips64el
Install-Time: 38
Job: pbseqlib_5.3.4+dfsg-3
Lintian: pass
Machine Architecture: amd64
Package: pbseqlib
Package-Time: 532
Source-Version: 5.3.4+dfsg-3
Space: 421472
Status: successful
Version: 5.3.4+dfsg-3
--------------------------------------------------------------------------------
Finished at 2020-12-01T14:32:13Z
Build needed 00:08:52, 421472k disk space