sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org

+==============================================================================+
| pbseqlib 5.3.4+dfsg-3 (ppc64el)              Thu, 29 Apr 2021 18:02:14 +0000 |
+==============================================================================+

Package: pbseqlib
Version: 5.3.4+dfsg-3
Source Version: 5.3.4+dfsg-3
Distribution: unstable
Machine Architecture: amd64
Host Architecture: ppc64el
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-9be52097-2d6e-4b5b-a140-da52f27d6cc8' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-hcPyFc/resolver-fnZ5LU' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://debian.oregonstate.edu/debian unstable InRelease [157 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-04-29-1404.07-F-2021-04-29-0800.54.pdiff [10.5 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-04-29-1404.07-F-2021-04-29-0800.54.pdiff [10.5 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-04-29-1404.07-F-2021-04-29-0800.54.pdiff [10.3 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-04-29-1404.07-F-2021-04-29-0800.54.pdiff [10.3 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [8451 kB]
Fetched 8757 kB in 4s (2171 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'pbseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pbseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/pbseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 970 kB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main pbseqlib 5.3.4+dfsg-3 (dsc) [2448 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main pbseqlib 5.3.4+dfsg-3 (tar) [958 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main pbseqlib 5.3.4+dfsg-3 (diff) [9444 B]
Fetched 970 kB in 0s (10.7 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pbseqlib-hcPyFc/pbseqlib-5.3.4+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-hcPyFc' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [491 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [579 B]
Fetched 2027 B in 0s (79.3 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu
  bsdextrautils build-essential cmake cmake-data cpp-10-powerpc64le-linux-gnu
  cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el d-shlibs
  debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file
  g++ g++-10 g++-10-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu
  gcc-10-base:ppc64el gcc-10-cross-base gcc-10-powerpc64le-linux-gnu
  gcc-10-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext
  gettext-base googletest groff-base hdf5-helpers:ppc64el intltool-debian
  libaec-dev:ppc64el libaec0:ppc64el libarchive-zip-perl libarchive13
  libasan6:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el
  libatomic1-ppc64el-cross libboost-dev:ppc64el libboost1.74-dev:ppc64el
  libbrotli1 libbrotli1:ppc64el libbz2-1.0:ppc64el libc6:ppc64el libc6-dev
  libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross
  libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev
  libcrypt-dev:ppc64el libcrypt1:ppc64el libcurl3-gnutls:ppc64el libcurl4
  libcurl4-gnutls-dev:ppc64el libdb5.3:ppc64el libdebhelper-perl
  libdebian-dpkgcross-perl libdeflate-dev:ppc64el libdeflate0:ppc64el
  libdpkg-perl libelf1 libexpat1 libffi7:ppc64el libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:ppc64el
  libgcc-10-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross
  libgfortran5:ppc64el libglib2.0-0 libgmp10:ppc64el libgnutls30:ppc64el
  libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el
  libgtest-dev:ppc64el libhdf5-103-1:ppc64el libhdf5-cpp-103-1:ppc64el
  libhdf5-dev:ppc64el libhdf5-fortran-102:ppc64el libhdf5-hl-100:ppc64el
  libhdf5-hl-cpp-100:ppc64el libhdf5-hl-fortran-100:ppc64el
  libhogweed6:ppc64el libhts-dev:ppc64el libhts3:ppc64el libicu67
  libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross
  libjpeg-dev:ppc64el libjpeg62-turbo:ppc64el libjpeg62-turbo-dev:ppc64el
  libjsoncpp24 libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el
  libkrb5support0:ppc64el libldap-2.4-2 libldap-2.4-2:ppc64el
  liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross
  liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libmpdec3
  libncurses6 libnettle8:ppc64el libnghttp2-14 libnghttp2-14:ppc64el
  libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libp11-kit0:ppc64el
  libpbbam-dev:ppc64el libpbbam1.6.0:ppc64el libpbcopper-dev:ppc64el
  libpbcopper1.8.0:ppc64el libperl5.32 libpipeline1 libprocps8 libpsl5
  libpsl5:ppc64el libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib
  libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8 librhash0
  librtmp1 librtmp1:ppc64el libsasl2-2 libsasl2-2:ppc64el libsasl2-modules-db
  libsasl2-modules-db:ppc64el libsigsegv2 libsqlite3-0 libssh2-1
  libssh2-1:ppc64el libssl-dev:ppc64el libssl1.1:ppc64el libstdc++-10-dev
  libstdc++-10-dev:ppc64el libstdc++-10-dev-ppc64el-cross libstdc++6:ppc64el
  libstdc++6-ppc64el-cross libsub-override-perl libsz2:ppc64el
  libtasn1-6:ppc64el libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el
  libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el
  libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libuv1
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types
  meson ninja-build perl perl-modules-5.32 pkg-config po-debconf procps
  python3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal
  readline-common sensible-utils ucf zlib1g:ppc64el zlib1g-dev:ppc64el
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc
  gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring
  g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison
  gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev
  libgettextpo-dev groff lrzip libboost-doc:ppc64el libboost1.74-doc:ppc64el
  libboost-atomic1.74-dev:ppc64el libboost-chrono1.74-dev:ppc64el
  libboost-container1.74-dev:ppc64el libboost-context1.74-dev:ppc64el
  libboost-contract1.74-dev:ppc64el libboost-coroutine1.74-dev:ppc64el
  libboost-date-time1.74-dev:ppc64el libboost-exception1.74-dev:ppc64el
  libboost-fiber1.74-dev:ppc64el libboost-filesystem1.74-dev:ppc64el
  libboost-graph1.74-dev:ppc64el libboost-graph-parallel1.74-dev:ppc64el
  libboost-iostreams1.74-dev:ppc64el libboost-locale1.74-dev:ppc64el
  libboost-log1.74-dev:ppc64el libboost-math1.74-dev:ppc64el
  libboost-mpi1.74-dev:ppc64el libboost-mpi-python1.74-dev:ppc64el
  libboost-numpy1.74-dev:ppc64el libboost-program-options1.74-dev:ppc64el
  libboost-python1.74-dev:ppc64el libboost-random1.74-dev:ppc64el
  libboost-regex1.74-dev:ppc64el libboost-serialization1.74-dev:ppc64el
  libboost-stacktrace1.74-dev:ppc64el libboost-system1.74-dev:ppc64el
  libboost-test1.74-dev:ppc64el libboost-thread1.74-dev:ppc64el
  libboost-timer1.74-dev:ppc64el libboost-type-erasure1.74-dev:ppc64el
  libboost-wave1.74-dev:ppc64el libboost1.74-tools-dev:ppc64el
  libmpfrc++-dev:ppc64el libntl-dev:ppc64el libboost-nowide1.74-dev:ppc64el
  glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el glibc-doc
  manpages-dev:ppc64el libcurl4-doc:ppc64el libgnutls28-dev:ppc64el
  libidn11-dev:ppc64el libkrb5-dev:ppc64el libldap2-dev:ppc64el
  librtmp-dev:ppc64el libssh2-1-dev:ppc64el gnupg git bzr gnutls-bin:ppc64el
  krb5-doc:ppc64el krb5-user:ppc64el libhdf5-doc:ppc64el liblzma-doc:ppc64el
  libssl-doc:ppc64el libstdc++-10-doc libstdc++-10-doc:ppc64el libtool-doc
  gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor
  less www-browser perl-doc libterm-readline-gnu-perl
  | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl
  python3-doc python3-tk python3-venv python3-setuptools python3.9-venv
  python3.9-doc binfmt-support readline-doc
Recommended packages:
  gnupg libalgorithm-merge-perl curl | wget | lynx libnss-nis:ppc64el
  libnss-nisplus:ppc64el ca-certificates:ppc64el ca-certificates
  libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs krb5-locales:ppc64el libldap-common libldap-common:ppc64el
  libgpm2 publicsuffix publicsuffix:ppc64el libsasl2-modules
  libsasl2-modules:ppc64el libltdl-dev libwww-perl libxml-sax-expat-perl
  libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl
  psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu
  bsdextrautils build-essential cmake cmake-data cpp-10-powerpc64le-linux-gnu
  cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el d-shlibs
  debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file
  g++ g++-10 g++-10-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu
  gcc-10-base:ppc64el gcc-10-cross-base gcc-10-powerpc64le-linux-gnu
  gcc-10-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext
  gettext-base googletest groff-base hdf5-helpers:ppc64el intltool-debian
  libaec-dev:ppc64el libaec0:ppc64el libarchive-zip-perl libarchive13
  libasan6:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el
  libatomic1-ppc64el-cross libboost-dev:ppc64el libboost1.74-dev:ppc64el
  libbrotli1 libbrotli1:ppc64el libbz2-1.0:ppc64el libc6:ppc64el libc6-dev
  libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross
  libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev
  libcrypt-dev:ppc64el libcrypt1:ppc64el libcurl3-gnutls:ppc64el libcurl4
  libcurl4-gnutls-dev:ppc64el libdb5.3:ppc64el libdebhelper-perl
  libdebian-dpkgcross-perl libdeflate-dev:ppc64el libdeflate0:ppc64el
  libdpkg-perl libelf1 libexpat1 libffi7:ppc64el libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev:ppc64el
  libgcc-10-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross
  libgfortran5:ppc64el libglib2.0-0 libgmp10:ppc64el libgnutls30:ppc64el
  libgomp1:ppc64el libgomp1-ppc64el-cross libgssapi-krb5-2:ppc64el
  libgtest-dev:ppc64el libhdf5-103-1:ppc64el libhdf5-cpp-103-1:ppc64el
  libhdf5-dev:ppc64el libhdf5-fortran-102:ppc64el libhdf5-hl-100:ppc64el
  libhdf5-hl-cpp-100:ppc64el libhdf5-hl-fortran-100:ppc64el
  libhogweed6:ppc64el libhts-dev:ppc64el libhts3:ppc64el libicu67
  libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross
  libjpeg-dev:ppc64el libjpeg62-turbo:ppc64el libjpeg62-turbo-dev:ppc64el
  libjsoncpp24 libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el
  libkrb5support0:ppc64el libldap-2.4-2 libldap-2.4-2:ppc64el
  liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross
  liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libmpdec3
  libncurses6 libnettle8:ppc64el libnghttp2-14 libnghttp2-14:ppc64el
  libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libp11-kit0:ppc64el
  libpbbam-dev:ppc64el libpbbam1.6.0:ppc64el libpbcopper-dev:ppc64el
  libpbcopper1.8.0:ppc64el libperl5.32 libpipeline1 libprocps8 libpsl5
  libpsl5:ppc64el libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib
  libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8 librhash0
  librtmp1 librtmp1:ppc64el libsasl2-2 libsasl2-2:ppc64el libsasl2-modules-db
  libsasl2-modules-db:ppc64el libsigsegv2 libsqlite3-0 libssh2-1
  libssh2-1:ppc64el libssl-dev:ppc64el libssl1.1:ppc64el libstdc++-10-dev
  libstdc++-10-dev:ppc64el libstdc++-10-dev-ppc64el-cross libstdc++6:ppc64el
  libstdc++6-ppc64el-cross libsub-override-perl libsz2:ppc64el
  libtasn1-6:ppc64el libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el
  libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el
  libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libuv1
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db media-types
  meson ninja-build perl perl-modules-5.32 pkg-config po-debconf procps
  python3 python3-minimal python3-pkg-resources python3.9 python3.9-minimal
  readline-common sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf
  zlib1g:ppc64el zlib1g-dev:ppc64el
0 upgraded, 205 newly installed, 0 to remove and 0 not upgraded.
Need to get 268 MB of archives.
After this operation, 1257 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1008 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-7 [145 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-3 [2823 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-3 [4110 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-3 [293 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 media-types all 4.0.0 [30.3 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-1 [73.7 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-1 [169 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 python3.9 amd64 3.9.2-1 [466 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.9.2-3 [37.9 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-10-base ppc64el 10.2.1-6 [201 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.17-5 [502 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.35.2-2 [2302 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-11 [2346 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.18.4-2 [1725 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-6 [8625 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-2 [232 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.9.0-3 [169 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.74.0-1.2 [341 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.4.1-2 [129 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.40.0-1 [132 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.18.4-2 [5593 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-powerpc64le-linux-gnu-base amd64 10.2.1-6cross1 [202 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-powerpc64le-linux-gnu amd64 10.2.1-6cross1 [42.9 MB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:10.2.1-1 [16.8 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.17 [31.4 kB]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-6cross1 [197 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.31-9cross4 [1534 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 10.2.1-6cross1 [30.5 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 10.2.1-6cross1 [106 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 10.2.1-6cross1 [28.4 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 10.2.1-6cross1 [9712 B]
Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-ppc64el-cross all 10.2.1-6cross1 [2096 kB]
Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 10.2.1-6cross1 [847 kB]
Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 10.2.1-6cross1 [2025 kB]
Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 10.2.1-6cross1 [497 kB]
Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 10.2.1-6cross1 [798 kB]
Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 10.2.1-6cross1 [149 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-ppc64el-cross all 10.2.1-6cross1 [1249 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-powerpc64le-linux-gnu amd64 10.2.1-6cross1 [48.9 MB]
Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:10.2.1-1 [1468 B]
Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.10.13-1cross4 [1391 kB]
Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.31-9cross4 [2382 kB]
Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-ppc64el-cross all 10.2.1-6cross1 [1775 kB]
Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-powerpc64le-linux-gnu amd64 10.2.1-6cross1 [46.0 MB]
Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:10.2.1-1 [1184 B]
Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB]
Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB]
Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB]
Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB]
Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB]
Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB]
Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB]
Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB]
Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.17 [30.4 kB]
Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.17 [41.4 kB]
Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.9 [6716 B]
Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.98 [17.9 kB]
Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.4 [189 kB]
Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB]
Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.183-3 [165 kB]
Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB]
Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB]
Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.4 [1049 kB]
Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 googletest all 1.10.0.20201025-1.1 [629 kB]
Get:121 http://debian.oregonstate.edu/debian unstable/main ppc64el hdf5-helpers ppc64el 1.10.6+repack-2 [40.0 kB]
Get:122 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-s1 ppc64el 10.2.1-6 [30.3 kB]
Get:123 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.4.18-4 [96.7 kB]
Get:124 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.31-11 [2832 kB]
Get:125 http://debian.oregonstate.edu/debian unstable/main ppc64el libaec0 ppc64el 1.0.4-2 [21.9 kB]
Get:126 http://debian.oregonstate.edu/debian unstable/main ppc64el libsz2 ppc64el 1.0.4-2 [7292 B]
Get:127 http://debian.oregonstate.edu/debian unstable/main ppc64el libaec-dev ppc64el 1.0.4-2 [20.6 kB]
Get:128 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan6 ppc64el 10.2.1-6 [2101 kB]
Get:129 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 10.2.1-6 [9856 B]
Get:130 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 10.2.1-6 [108 kB]
Get:131 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 10.2.1-6 [28.8 kB]
Get:132 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 10.2.1-6 [847 kB]
Get:133 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 10.2.1-6 [2032 kB]
Get:134 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 10.2.1-6 [538 kB]
Get:135 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 10.2.1-6 [798 kB]
Get:136 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 10.2.1-6 [149 kB]
Get:137 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-10-dev ppc64el 10.2.1-6 [1245 kB]
Get:138 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.10.28-1 [1314 kB]
Get:139 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt-dev ppc64el 1:4.4.18-4 [119 kB]
Get:140 http://debian.oregonstate.edu/debian unstable/main ppc64el libcom-err2 ppc64el 1.46.2-1 [74.6 kB]
Get:141 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5support0 ppc64el 1.18.3-5 [68.6 kB]
Get:142 http://debian.oregonstate.edu/debian unstable/main ppc64el libk5crypto3 ppc64el 1.18.3-5 [125 kB]
Get:143 http://debian.oregonstate.edu/debian unstable/main ppc64el libkeyutils1 ppc64el 1.6.1-2 [16.7 kB]
Get:144 http://debian.oregonstate.edu/debian unstable/main ppc64el libssl1.1 ppc64el 1.1.1k-1 [1538 kB]
Get:145 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5-3 ppc64el 1.18.3-5 [392 kB]
Get:146 http://debian.oregonstate.edu/debian unstable/main ppc64el libgssapi-krb5-2 ppc64el 1.18.3-5 [179 kB]
Get:147 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc3 ppc64el 1.3.1-1 [95.0 kB]
Get:148 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl2 ppc64el 1.3.0-2 [44.8 kB]
Get:149 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc-dev ppc64el 1.3.1-1 [208 kB]
Get:150 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl-dev ppc64el 1.3.0-2 [73.6 kB]
Get:151 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.31-11 [2387 kB]
Get:152 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-10-dev ppc64el 10.2.1-6 [1794 kB]
Get:153 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost1.74-dev ppc64el 1.74.0-9 [9534 kB]
Get:154 http://debian.oregonstate.edu/debian unstable/main ppc64el libboost-dev ppc64el 1.74.0.3 [4548 B]
Get:155 http://debian.oregonstate.edu/debian unstable/main ppc64el libbrotli1 ppc64el 1.0.9-2+b2 [295 kB]
Get:156 http://debian.oregonstate.edu/debian unstable/main ppc64el libbz2-1.0 ppc64el 1.0.8-4 [51.0 kB]
Get:157 http://debian.oregonstate.edu/debian unstable/main ppc64el libgmp10 ppc64el 2:6.2.1+dfsg-1 [577 kB]
Get:158 http://debian.oregonstate.edu/debian unstable/main ppc64el libnettle8 ppc64el 3.7.2-3 [296 kB]
Get:159 http://debian.oregonstate.edu/debian unstable/main ppc64el libhogweed6 ppc64el 3.7.2-3 [323 kB]
Get:160 http://debian.oregonstate.edu/debian unstable/main ppc64el libunistring2 ppc64el 0.9.10-4 [384 kB]
Get:161 http://debian.oregonstate.edu/debian unstable/main ppc64el libidn2-0 ppc64el 2.3.0-5 [89.2 kB]
Get:162 http://debian.oregonstate.edu/debian unstable/main ppc64el libffi7 ppc64el 3.3-6 [24.1 kB]
Get:163 http://debian.oregonstate.edu/debian unstable/main ppc64el libp11-kit0 ppc64el 0.23.22-1 [339 kB]
Get:164 http://debian.oregonstate.edu/debian unstable/main ppc64el libtasn1-6 ppc64el 4.16.0-2 [59.5 kB]
Get:165 http://debian.oregonstate.edu/debian unstable/main ppc64el libgnutls30 ppc64el 3.7.1-4 [1314 kB]
Get:166 http://debian.oregonstate.edu/debian unstable/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.8 [722 kB]
Get:167 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-2.1 [71.2 kB]
Get:168 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-2.1 [115 kB]
Get:169 http://debian.oregonstate.edu/debian unstable/main ppc64el libldap-2.4-2 ppc64el 2.4.57+dfsg-2 [248 kB]
Get:170 http://debian.oregonstate.edu/debian unstable/main ppc64el libnghttp2-14 ppc64el 1.43.0-1 [85.0 kB]
Get:171 http://debian.oregonstate.edu/debian unstable/main ppc64el libpsl5 ppc64el 0.21.0-1.2 [59.3 kB]
Get:172 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2 [94.7 kB]
Get:173 http://debian.oregonstate.edu/debian unstable/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2+b2 [65.9 kB]
Get:174 http://debian.oregonstate.edu/debian unstable/main ppc64el libssh2-1 ppc64el 1.9.0-3 [178 kB]
Get:175 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl3-gnutls ppc64el 7.74.0-1.2 [353 kB]
Get:176 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl4-gnutls-dev ppc64el 7.74.0-1.2 [456 kB]
Get:177 http://debian.oregonstate.edu/debian unstable/main ppc64el libdeflate0 ppc64el 1.7-1 [43.4 kB]
Get:178 http://debian.oregonstate.edu/debian unstable/main ppc64el libdeflate-dev ppc64el 1.7-1 [41.7 kB]
Get:179 http://debian.oregonstate.edu/debian unstable/main ppc64el libgfortran5 ppc64el 10.2.1-6 [427 kB]
Get:180 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB]
Get:181 http://debian.oregonstate.edu/debian unstable/main ppc64el libgtest-dev ppc64el 1.10.0.20201025-1.1 [232 kB]
Get:182 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-103-1 ppc64el 1.10.6+repack-2 [1095 kB]
Get:183 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-cpp-103-1 ppc64el 1.10.6+repack-2 [141 kB]
Get:184 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-fortran-102 ppc64el 1.10.6+repack-2 [109 kB]
Get:185 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-hl-100 ppc64el 1.10.6+repack-2 [89.3 kB]
Get:186 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-hl-fortran-100 ppc64el 1.10.6+repack-2 [56.9 kB]
Get:187 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-hl-cpp-100 ppc64el 1.10.6+repack-2 [37.5 kB]
Get:188 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2 [195 kB]
Get:189 http://debian.oregonstate.edu/debian unstable/main ppc64el libjpeg62-turbo ppc64el 1:2.0.6-4 [159 kB]
Get:190 http://debian.oregonstate.edu/debian unstable/main ppc64el libjpeg62-turbo-dev ppc64el 1:2.0.6-4 [286 kB]
Get:191 http://debian.oregonstate.edu/debian unstable/main ppc64el libjpeg-dev ppc64el 1:2.0.6-4 [67.8 kB]
Get:192 http://debian.oregonstate.edu/debian unstable/main ppc64el libhdf5-dev ppc64el 1.10.6+repack-2 [2662 kB]
Get:193 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma5 ppc64el 5.2.5-2 [178 kB]
Get:194 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts3 ppc64el 1.11-4 [416 kB]
Get:195 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma-dev ppc64el 5.2.5-2 [242 kB]
Get:196 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts-dev ppc64el 1.11-4 [3875 kB]
Get:197 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbcopper1.8.0 ppc64el 1.8.0+dfsg-2+b1 [434 kB]
Get:198 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbbam1.6.0 ppc64el 1.6.0+dfsg-2 [693 kB]
Get:199 http://debian.oregonstate.edu/debian unstable/main ppc64el libssl-dev ppc64el 1.1.1k-1 [1841 kB]
Get:200 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbbam-dev ppc64el 1.6.0+dfsg-2 [87.2 kB]
Get:201 http://debian.oregonstate.edu/debian unstable/main ppc64el libpbcopper-dev ppc64el 1.8.0+dfsg-2+b1 [701 kB]
Get:202 http://debian.oregonstate.edu/debian unstable/main amd64 ninja-build amd64 1.10.1-1 [112 kB]
Get:203 http://debian.oregonstate.edu/debian unstable/main amd64 python3-pkg-resources all 52.0.0-3 [189 kB]
Get:204 http://debian.oregonstate.edu/debian unstable/main amd64 meson all 0.57.0+really0.56.2-0.1 [437 kB]
Get:205 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 268 MB in 2s (130 MB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 10487 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.36.1-7_amd64.deb ...
Unpacking bsdextrautils (2.36.1-7) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ...
Unpacking groff-base (1.22.4-6) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package perl-modules-5.32.
Preparing to unpack .../05-perl-modules-5.32_5.32.1-3_all.deb ...
Unpacking perl-modules-5.32 (5.32.1-3) ...
Selecting previously unselected package libperl5.32:amd64.
Preparing to unpack .../06-libperl5.32_5.32.1-3_amd64.deb ...
Unpacking libperl5.32:amd64 (5.32.1-3) ...
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Setting up libstdc++6-ppc64el-cross (10.2.1-6cross1) ...
Setting up autoconf (2.69-14) ...
Setting up g++ (4:10.2.1-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
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Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ...
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Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up libubsan1-ppc64el-cross (10.2.1-6cross1) ...
Setting up libdebhelper-perl (13.3.4) ...
Setting up libxml-namespacesupport-perl (1.12-1.1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libyaml-perl (1.30-1) ...
Setting up dpkg-dev (1.20.9) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up dh-autoreconf (20) ...
Setting up libxml-sax-base-perl (1.09-1.1) ...
Setting up libio-string-perl (1.08-3.1) ...
Setting up pkg-config (0.29.2-1) ...
Setting up cmake (3.18.4-2) ...
Setting up build-essential (12.9) ...
Setting up libfile-homedir-perl (1.006-1) ...
Setting up python3.9 (3.9.2-1) ...
Setting up libfile-stripnondeterminism-perl (1.11.0-1) ...
Setting up libgcc-10-dev-ppc64el-cross (10.2.1-6cross1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3 (3.9.2-3) ...
Setting up libxml-sax-perl (1.02+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libstdc++-10-dev-ppc64el-cross (10.2.1-6cross1) ...
Setting up gcc-10-powerpc64le-linux-gnu (10.2.1-6cross1) ...
Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up dh-strip-nondeterminism (1.11.0-1) ...
Setting up python3-pkg-resources (52.0.0-3) ...
Setting up g++-10-powerpc64le-linux-gnu (10.2.1-6cross1) ...
Setting up meson (0.57.0+really0.56.2-0.1) ...
Setting up debhelper (13.3.4) ...
Setting up gcc-powerpc64le-linux-gnu (4:10.2.1-1) ...
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Setting up libconfig-auto-perl (0.44-1.1) ...
Setting up libdebian-dpkgcross-perl (2.6.17) ...
Setting up dpkg-cross (2.6.17) ...
Setting up crossbuild-essential-ppc64el (12.9) ...
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Setting up libkeyutils1:ppc64el (1.6.1-2) ...
Setting up liblzma5:ppc64el (5.2.5-2) ...
Setting up libssl1.1:ppc64el (1.1.1k-1) ...
Setting up libbrotli1:ppc64el (1.0.9-2+b2) ...
Setting up libffi7:ppc64el (3.3-6) ...
Setting up libnghttp2-14:ppc64el (1.43.0-1) ...
Setting up libunistring2:ppc64el (0.9.10-4) ...
Setting up libdeflate0:ppc64el (1.7-1) ...
Setting up zlib1g:ppc64el (1:1.2.11.dfsg-2) ...
Setting up libidn2-0:ppc64el (2.3.0-5) ...
Setting up libcom-err2:ppc64el (1.46.2-1) ...
Setting up libgomp1:ppc64el (10.2.1-6) ...
Setting up libaec0:ppc64el (1.0.4-2) ...
Setting up libasan6:ppc64el (10.2.1-6) ...
Setting up libkrb5support0:ppc64el (1.18.3-5) ...
Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-2.1) ...
Setting up libjpeg62-turbo:ppc64el (1:2.0.6-4) ...
Setting up libnettle8:ppc64el (3.7.2-3) ...
Setting up libgmp10:ppc64el (2:6.2.1+dfsg-1) ...
Setting up libquadmath0:ppc64el (10.2.1-6) ...
Setting up libp11-kit0:ppc64el (0.23.22-1) ...
Setting up libssl-dev:ppc64el (1.1.1k-1) ...
Setting up libatomic1:ppc64el (10.2.1-6) ...
Setting up libk5crypto3:ppc64el (1.18.3-5) ...
Setting up libsasl2-2:ppc64el (2.1.27+dfsg-2.1) ...
Setting up libgfortran5:ppc64el (10.2.1-6) ...
Setting up liblzma-dev:ppc64el (5.2.5-2) ...
Setting up libubsan1:ppc64el (10.2.1-6) ...
Setting up libpbcopper1.8.0:ppc64el (1.8.0+dfsg-2+b1) ...
Setting up libssh2-1:ppc64el (1.9.0-3) ...
Setting up libkrb5-3:ppc64el (1.18.3-5) ...
Setting up libdeflate-dev:ppc64el (1.7-1) ...
Setting up libsz2:ppc64el (1.0.4-2) ...
Setting up libpsl5:ppc64el (0.21.0-1.2) ...
Setting up libhogweed6:ppc64el (3.7.2-3) ...
Setting up libgcc-10-dev:ppc64el (10.2.1-6) ...
Setting up libaec-dev:ppc64el (1.0.4-2) ...
Setting up libgnutls30:ppc64el (3.7.1-4) ...
Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libgssapi-krb5-2:ppc64el (1.18.3-5) ...
Setting up libpbcopper-dev:ppc64el (1.8.0+dfsg-2+b1) ...
Setting up libhdf5-103-1:ppc64el (1.10.6+repack-2) ...
Setting up libhdf5-cpp-103-1:ppc64el (1.10.6+repack-2) ...
Setting up libhdf5-hl-100:ppc64el (1.10.6+repack-2) ...
Setting up libtirpc3:ppc64el (1.3.1-1) ...
Setting up libldap-2.4-2:ppc64el (2.4.57+dfsg-2) ...
Setting up libcurl3-gnutls:ppc64el (7.74.0-1.2) ...
Setting up libcurl4-gnutls-dev:ppc64el (7.74.0-1.2) ...
Setting up libhdf5-hl-cpp-100:ppc64el (1.10.6+repack-2) ...
Setting up libtirpc-dev:ppc64el (1.3.1-1) ...
Setting up libhdf5-fortran-102:ppc64el (1.10.6+repack-2) ...
Setting up libnsl2:ppc64el (1.3.0-2) ...
Setting up libhdf5-hl-fortran-100:ppc64el (1.10.6+repack-2) ...
Setting up libhts3:ppc64el (1.11-4) ...
Setting up libnsl-dev:ppc64el (1.3.0-2) ...
Setting up libc6-dev:ppc64el (2.31-11) ...
Setting up libpbbam1.6.0:ppc64el (1.6.0+dfsg-2) ...
Setting up libstdc++-10-dev:ppc64el (10.2.1-6) ...
Setting up libboost1.74-dev:ppc64el (1.74.0-9) ...
Setting up libjpeg62-turbo-dev:ppc64el (1:2.0.6-4) ...
Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2) ...
Setting up libboost-dev:ppc64el (1.74.0.3) ...
Setting up libjpeg-dev:ppc64el (1:2.0.6-4) ...
Setting up libhts-dev:ppc64el (1.11-4) ...
Setting up libhdf5-dev:ppc64el (1.10.6+repack-2) ...
update-alternatives: using /usr/lib/powerpc64le-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/powerpc64le-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpbbam-dev:ppc64el (1.6.0+dfsg-2) ...
Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ...
Processing triggers for libc-bin (2.31-11) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (ppc64el included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) amd64 (x86_64)
Toolchain package versions: binutils_2.35.2-2 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-11 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-ppc64el-cross_10.2.1-6cross1 libstdc++6_10.2.1-6 libstdc++6-ppc64el-cross_10.2.1-6cross1 linux-libc-dev_5.10.28-1
Package versions: adduser_3.118 apt_2.2.3 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.49 bash_5.1-2+b1 binutils_2.35.2-2 binutils-common_2.35.2-2 binutils-powerpc64le-linux-gnu_2.35.2-2 binutils-x86-64-linux-gnu_2.35.2-2 bsdextrautils_2.36.1-7 bsdutils_1:2.36.1-7 build-essential_12.9 bzip2_1.0.8-4 cmake_3.18.4-2 cmake-data_3.18.4-2 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-powerpc64le-linux-gnu_10.2.1-6cross1 cpp-8_8.4.0-7 cpp-powerpc64le-linux-gnu_4:10.2.1-1 cross-config_2.6.17 crossbuild-essential-ppc64el_12.9 d-shlibs_0.98 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.76 debhelper_13.3.4 debian-archive-keyring_2021.1.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.17 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.2-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-7 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-powerpc64le-linux-gnu_10.2.1-6cross1 g++-powerpc64le-linux-gnu_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.2.1-6 gcc-10-base_10.2.1-6 gcc-10-cross-base_10.2.1-6cross1 gcc-10-powerpc64le-linux-gnu_10.2.1-6cross1 gcc-10-powerpc64le-linux-gnu-base_10.2.1-6cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.3.0-22 gcc-powerpc64le-linux-gnu_4:10.2.1-1 gettext_0.21-4 gettext-base_0.21-4 googletest_1.10.0.20201025-1.1 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libaec-dev_1.0.4-2 libaec0_1.0.4-2 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.2.3 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2+b1 libasan5_9.3.0-22 libasan6_10.2.1-6 libasan6-ppc64el-cross_10.2.1-6cross1 libatomic1_10.2.1-6 libatomic1-ppc64el-cross_10.2.1-6cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2 libblkid1_2.36.1-7 libboost-dev_1.74.0.3 libboost1.74-dev_1.74.0-9 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libc-bin_2.31-11 libc-dev-bin_2.31-11 libc6_2.31-11 libc6-dev_2.31-11 libc6-dev-ppc64el-cross_2.31-9cross4 libc6-ppc64el-cross_2.31-9cross4 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6 libcom-err2_1.46.2-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2 libctf0_2.35.2-2 libcurl3-gnutls_7.74.0-1.2 libcurl4_7.74.0-1.2 libcurl4-gnutls-dev_7.74.0-1.2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.257 libdebhelper-perl_13.3.4 libdebian-dpkgcross-perl_2.6.17 libdeflate-dev_1.7-1 libdeflate0_1.7-1 libdpkg-perl_1.20.9 libelf1_0.183-3 libexpat1_2.2.10-2 libext2fs2_1.46.2-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-7 libffi6_3.2.1-9 libffi7_3.3-6 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.11.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.1-6 libgcc-10-dev-ppc64el-cross_10.2.1-6cross1 libgcc-s1_10.2.1-6 libgcc-s1-ppc64el-cross_10.2.1-6cross1 libgcrypt20_1.8.7-3 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_10.2.1-6 libglib2.0-0_2.66.8-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-4 libgomp1_10.2.1-6 libgomp1-ppc64el-cross_10.2.1-6cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-5 libgtest-dev_1.10.0.20201025-1.1 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.2-3 libhts-dev_1.11-4 libhts3_1.11-4 libicu67_67.1-6 libidn2-0_2.3.0-5 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.1-6 libitm1-ppc64el-cross_10.2.1-6cross1 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-5 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-5 libkrb5support0_1.18.3-5 libldap-2.4-2_2.4.57+dfsg-2 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-6 liblsan0-ppc64el-cross_10.2.1-6cross1 liblz4-1_1.9.3-1 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-7 libmpc3_1.2.0-1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.2-3 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-7 libpam-modules-bin_1.4.0-7 libpam-runtime_1.4.0-7 libpam0g_1.4.0-7 libpbbam-dev_1.6.0+dfsg-2 libpbbam1.6.0_1.6.0+dfsg-2 libpbcopper-dev_1.8.0+dfsg-2+b1 libpbcopper1.8.0_1.8.0+dfsg-2+b1 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-3 libpipeline1_1.5.3-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.2-1 libpython3.9-stdlib_3.9.2-1 libquadmath0_10.2.1-6 libquadmath0-ppc64el-cross_10.2.1-6cross1 libreadline8_8.1-1 librhash0_1.4.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-7 libsqlite3-0_3.34.1-3 libss2_1.46.2-1 libssh2-1_1.9.0-3 libssl-dev_1.1.1k-1 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-ppc64el-cross_10.2.1-6cross1 libstdc++6_10.2.1-6 libstdc++6-ppc64el-cross_10.2.1-6cross1 libsub-override-perl_0.09-2 libsystemd0_247.3-5 libsz2_1.0.4-2 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libtsan0_10.2.1-6 libtsan0-ppc64el-cross_10.2.1-6cross1 libubsan1_10.2.1-6 libubsan1-ppc64el-cross_10.2.1-6cross1 libuchardet0_0.0.7-1 libudev1_247.3-5 libunistring2_0.9.10-4 libuuid1_2.36.1-7 libuv1_1.40.0-1 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.3+b1 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.28-1 linux-libc-dev-ppc64el-cross_5.10.13-1cross4 login_1:4.8.1-1 logsave_1.46.2-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 meson_0.57.0+really0.56.2-0.1 mount_2.36.1-7 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 ninja-build_1.10.1-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-3 perl-base_5.32.1-3 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-3 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 python3_3.9.2-3 python3-minimal_3.9.2-3 python3-pkg-resources_52.0.0-3 python3.9_3.9.2-1 python3.9-minimal_3.9.2-1 readline-common_8.1-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 util-linux_2.36.1-7 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: pbseqlib
Binary: libblasr-dev, libblasr5.3.4, libpbseq, libpbseq-dev, libpbdata-dev, libpbihdf-dev
Architecture: any
Version: 5.3.4+dfsg-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/PacificBiosciences/blasr_libcpp
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib
Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git
Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libhts-dev
Package-List:
 libblasr-dev deb libdevel optional arch=any
 libblasr5.3.4 deb libs optional arch=any
 libpbdata-dev deb libdevel optional arch=any
 libpbihdf-dev deb libdevel optional arch=any
 libpbseq deb science optional arch=any
 libpbseq-dev deb libdevel optional arch=any
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig._cLrpg8m/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 16 12:52:04 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pbseqlib_5.3.4+dfsg-3.dsc
dpkg-source: info: extracting pbseqlib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pbseqlib_5.3.4+dfsg.orig.tar.xz
dpkg-source: info: unpacking pbseqlib_5.3.4+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-1.10.1-support.patch
dpkg-source: info: applying hdf5-1.10.0-support.patch
dpkg-source: info: applying meson.patch
dpkg-source: info: applying static+shared_lib.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-9be52097-2d6e-4b5b-a140-da52f27d6cc8
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package pbseqlib
dpkg-buildpackage: info: source version 5.3.4+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture ppc64el
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
find -name defines.mk -delete
rm -f pbdata/libconfig.h
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-powerpc64le-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/powerpc64le-linux-gnu --cross-file /<<BUILDDIR>>/pbseqlib-5.3.4\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf
WARNING: Unknown CPU family powerpc64le, please report this at https://github.com/mesonbuild/meson/issues/new
DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
The Meson build system
Version: 0.56.2
Source dir: /<<PKGBUILDDIR>>
Build dir: /<<PKGBUILDDIR>>/obj-powerpc64le-linux-gnu
Build type: cross build
Project name: libblasr
Project version: 5.3.4
Using 'CXXFLAGS' from environment with value: '-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14'
Using 'LDFLAGS' from environment with value: '-Wl,-z,relro -Wl,-z,now'
Using 'CPPFLAGS' from environment with value: '-Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -I/usr/include/hdf5/serial'
C++ compiler for the host machine: /usr/bin/powerpc64le-linux-gnu-g++ (gcc 10.2.1 "powerpc64le-linux-gnu-g++ (Debian 10.2.1-6) 10.2.1 20210110")
C++ linker for the host machine: /usr/bin/powerpc64le-linux-gnu-g++ ld.bfd 2.35.2
C++ compiler for the build machine: c++ (gcc 10.2.1 "c++ (Debian 10.2.1-6) 10.2.1 20210110")
C++ linker for the build machine: c++ ld.bfd 2.35.2
Build machine cpu family: x86_64
Build machine cpu: x86_64
Host machine cpu family: x86_64
Host machine cpu: x86_64
Target machine cpu family: powerpc64le
Target machine cpu: ppc64el
Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES 
Compiler for C++ supports arguments -Wno-unused-variable: YES 
Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES 
Found pkg-config: /usr/bin/powerpc64le-linux-gnu-pkg-config (0.29.2)
Run-time dependency Boost found: YES 1.74.0 (/usr/include)
Run-time dependency pbbam found: YES 1.6.0
Run-time dependency zlib found: YES 1.2.11
Run-time dependency htslib found: YES 1.11-4
Library rt found: YES
WARNING: Project targeting '>= 0.46.0' but tried to use feature introduced in '0.49.0': disabler arg in dependency.
Run-time dependency HDF5 for cpp found: YES 1.10.6
Configuring LibBlasrConfig.h using configuration
Program tools/check-formatting found: YES (/<<PKGBUILDDIR>>/tools/check-formatting)
WARNING: Project targeting '>= 0.46.0' but tried to use feature introduced in '0.53.0': Fallback without variable name.
Run-time dependency GTest found: YES 1.10.0
Build targets in project: 3
WARNING: Project specifies a minimum meson_version '>= 0.46.0' but uses features which were added in newer versions:
 * 0.49.0: {'disabler arg in dependency'}
 * 0.53.0: {'Fallback without variable name'}

Option buildtype is: plain [default: release]
Found ninja-1.10.1 at /usr/bin/ninja
   dh_auto_build -a
	cd obj-powerpc64le-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v
[1/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o -MF libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o.d -o libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o -c ../hdf/BufferedHDF2DArray.cpp
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:82:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   82 | DEFINE_TYPED_CREATE_ROW(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:83:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   83 | DEFINE_TYPED_CREATE_ROW(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:84:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   84 | DEFINE_TYPED_CREATE_ROW(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned char]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:85:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   85 | DEFINE_TYPED_CREATE_ROW(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short unsigned int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:86:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   86 | DEFINE_TYPED_CREATE_ROW(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:87:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   87 | DEFINE_TYPED_CREATE_ROW(int16_t, H5::PredType::NATIVE_INT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = float]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:88:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   88 | DEFINE_TYPED_CREATE_ROW(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[2/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o -MF libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o.d -o libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o -c ../hdf/BufferedHDFArray.cpp
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:67:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   67 | DEFINE_TYPED_CREATE_ARRAY(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:68:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   68 | DEFINE_TYPED_CREATE_ARRAY(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char*]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:69:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   69 | DEFINE_TYPED_CREATE_ARRAY(char *, H5::StrType(0, H5T_VARIABLE))
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned char]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:70:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   70 | DEFINE_TYPED_CREATE_ARRAY(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:71:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   71 | DEFINE_TYPED_CREATE_ARRAY(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = float]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:72:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   72 | DEFINE_TYPED_CREATE_ARRAY(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short unsigned int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:73:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   73 | DEFINE_TYPED_CREATE_ARRAY(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = std::__cxx11::basic_string<char>]’:
../hdf/BufferedHDFArray.cpp:79:86: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |     dataset = container->createDataSet(datasetName.c_str(), varStrType, space, cparms);
      |                                                                                      ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[3/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o -MF libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o.d -o libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o -c ../hdf/DatasetCollection.cpp
[4/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o -c ../hdf/HDFAlnGroupGroup.cpp
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFArray.hpp:9,
                 from ../hdf/HDFAlnGroupGroup.hpp:6,
                 from ../hdf/HDFAlnGroupGroup.cpp:1:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = std::__cxx11::basic_string<char>; DSLength = long unsigned int]’:
../hdf/HDFArray.hpp:67:20:   required from ‘void HDFArray<T>::Write(const T*, int) [with T = std::__cxx11::basic_string<char>]’
../hdf/HDFAlnGroupGroup.cpp:16:29:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned int; DSLength = long unsigned int]’:
../hdf/HDFArray.hpp:67:20:   required from ‘void HDFArray<T>::Write(const T*, int) [with T = unsigned int]’
../hdf/HDFAlnGroupGroup.cpp:18:25:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
[5/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o -c ../hdf/HDFAlnInfoGroup.cpp
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAlnInfoGroup.cpp:44:77:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72,
                 from ../hdf/HDFAlnInfoGroup.hpp:6,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = CmpAlignment; _Alloc = std::allocator<CmpAlignment>]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:611:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
  611 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
[6/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o -c ../hdf/HDFAtom.cpp
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::Create(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:9:92: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
    9 |     attribute = object.createAttribute(atomName.c_str(), strType, H5::DataSpace(H5S_SCALAR));
      |                                                                                            ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:20:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   20 | DEFINE_TYPED_CREATE_ATOM(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:21:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   21 | DEFINE_TYPED_CREATE_ATOM(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:22:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   22 | DEFINE_TYPED_CREATE_ATOM(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:23:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   23 | DEFINE_TYPED_CREATE_ATOM(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:24:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   24 | DEFINE_TYPED_CREATE_ATOM(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:25:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   25 | DEFINE_TYPED_CREATE_ATOM(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:26:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   26 | DEFINE_TYPED_CREATE_ATOM(uint64_t, H5::PredType::STD_I64LE)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp:52:32: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   52 |         } catch (H5::Exception e) {
      |                                ^
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[7/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o -c ../hdf/HDFAttributable.cpp
../hdf/HDFAttributable.cpp: In member function ‘int HDFAttributable::ContainsAttribute(const string&)’:
../hdf/HDFAttributable.cpp:48:28: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
   48 |     } catch (H5::Exception e) {
      |                            ^
[8/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o -c ../hdf/HDFBaseCallsWriter.cpp
../hdf/HDFBaseCallsWriter.cpp: In member function ‘virtual void HDFBaseCallsWriter::Close()’:
../hdf/HDFBaseCallsWriter.cpp:364:28: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
  364 |     } catch (H5::Exception e) {
      |                            ^
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFWriterBase.hpp:12,
                 from ../hdf/HDFBaseCallsWriter.hpp:12,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFBaseCallsWriter.cpp:342:26:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = short unsigned int; DSLength = long unsigned int]’:
../hdf/HDFBaseCallsWriter.cpp:350:35:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
In file included from ../hdf/HDFBaseCallsWriter.hpp:11,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFBaseCallsWriter.hpp:11,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[9/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o -c ../hdf/HDFBaxWriter.cpp
[10/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o -c ../hdf/HDFCmpExperimentGroup.cpp
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFArray.hpp:9,
                 from ../hdf/HDFCmpExperimentGroup.hpp:10,
                 from ../hdf/HDFCmpExperimentGroup.cpp:1:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFArray.hpp:67:20:   required from ‘void HDFArray<T>::Write(const T*, int) [with T = unsigned char]’
../hdf/HDFCmpExperimentGroup.cpp:36:69:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = char; DSLength = long unsigned int]’:
../hdf/HDFArray.hpp:67:20:   required from ‘void HDFArray<T>::Write(const T*, int) [with T = char]’
../hdf/HDFCmpExperimentGroup.cpp:199:72:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
[11/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o -c ../hdf/HDFCmpSupportedFields.cpp
[12/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFData.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFData.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFData.cpp.o -c ../hdf/HDFData.cpp
../hdf/HDFData.cpp: In member function ‘int HDFData::BaseInitializeDataset(H5::Group&, const string&)’:
../hdf/HDFData.cpp:37:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   37 |     dataset = hdfFile.openDataSet(_datasetName.c_str());
      |                                                       ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/HDFData.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/HDFData.cpp: In member function ‘int HDFData::InitializeDataset(H5::Group&, const string&)’:
../hdf/HDFData.cpp:52:59: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   52 |         dataset = hdfFile.openDataSet(_datasetName.c_str());
      |                                                           ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/HDFData.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[13/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o -c ../hdf/HDFFile.cpp
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:23:33: warning: catching polymorphic type ‘class H5::FileIException’ by value [-Wcatch-value=]
   23 |         } catch (FileIException e) {
      |                                 ^
../hdf/HDFFile.cpp:34:75: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy]
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:48,
                 from ../hdf/HDFFile.hpp:8,
                 from ../hdf/HDFFile.cpp:1:
/usr/include/hdf5/serial/H5File.h:101:9: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’
  101 |         H5File(const H5File& original);
      |         ^~~~~~
/usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’:
/usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   25 | class H5_DLLCPP H5File : public Group {
      |                 ^~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:47,
                 from ../hdf/HDFFile.hpp:8,
                 from ../hdf/HDFFile.cpp:1:
/usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   57 |         Group(const Group& original);
      |         ^~~~~
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:34:75: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
../hdf/HDFFile.cpp:35:33: warning: catching polymorphic type ‘class H5::FileIException’ by value [-Wcatch-value=]
   35 |         } catch (FileIException fileException) {
      |                                 ^~~~~~~~~~~~~
[14/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o -c ../hdf/HDFGroup.cpp
../hdf/HDFGroup.cpp: In member function ‘int HDFGroup::Initialize(H5::Group&, std::string)’:
../hdf/HDFGroup.cpp:18:47: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   18 |         group = fg.openGroup(groupName.c_str());
      |                                               ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:47,
                 from ../hdf/HDFGroup.hpp:9,
                 from ../hdf/HDFGroup.cpp:1:
/usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   57 |         Group(const Group& original);
      |         ^~~~~
[15/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o -c ../hdf/HDFNewBasReader.cpp
[16/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o -c ../hdf/HDFPulseCallsWriter.cpp
../hdf/HDFPulseCallsWriter.cpp: In member function ‘virtual void HDFPulseCallsWriter::Close()’:
../hdf/HDFPulseCallsWriter.cpp:513:28: warning: catching polymorphic type ‘class H5::Exception’ by value [-Wcatch-value=]
  513 |     } catch (H5::Exception e) {
      |                            ^
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFWriterBase.hpp:12,
                 from ../hdf/HDFPulseCallsWriter.hpp:12,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFPulseCallsWriter.cpp:492:47:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = short unsigned int; DSLength = long unsigned int]’:
../hdf/HDFPulseCallsWriter.cpp:497:39:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned int; DSLength = long unsigned int]’:
../hdf/HDFPulseCallsWriter.cpp:498:49:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[17/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o -c ../hdf/HDFPulseDataFile.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[18/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o -c ../hdf/HDFPulseH5Writer.cpp
[19/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o -c ../hdf/HDFPulseWriter.cpp
[20/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o -c ../hdf/HDFRegionsWriter.cpp
../hdf/HDFRegionsWriter.cpp: In member function ‘bool HDFRegionsWriter::Write(const std::vector<RegionAnnotation>&)’:
../hdf/HDFRegionsWriter.cpp:44:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   44 |     for (auto annotation : annotations)
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFWriterBase.hpp:17,
                 from ../hdf/HDFRegionsWriter.hpp:13,
                 from ../hdf/HDFRegionsWriter.cpp:3:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
[21/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o -c ../hdf/HDFRegionTableReader.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../hdf/HDFRegionTableReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:45:26:   required from ‘int HDFAtom<T>::Initialize(HDFData&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFRegionTableReader.cpp:31:54:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../hdf/HDFRegionTableReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[22/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o -c ../hdf/HDFScanDataReader.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:26:67:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:29:67:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:33:75:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[23/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o -c ../hdf/HDFScanDataWriter.cpp
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[24/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o -c ../hdf/HDFUtils.cpp
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/cassert:44,
                 from ../pbdata/reads/RegionTypeMap.hpp:7,
                 from ../pbdata/reads/RegionAnnotation.hpp:17,
                 from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFBasReader.hpp:21,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFBasReader.hpp: In instantiation of ‘void T_HDFBasReader<T_Sequence>::GetMinMaxHoleNumber(UInt&, UInt&) [with T_Sequence = FASTASequence; UInt = unsigned int]’:
../hdf/HDFUtils.cpp:41:55:   required from here
../hdf/HDFBasReader.hpp:1233:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
 1233 |         assert(nReads >= 0);
      |                ~~~~~~~^~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = FASTASequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFUtils.cpp:39:38:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[25/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o -c ../hdf/HDFWriterBase.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFWriterBase.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFWriterBase.cpp:49:88:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFWriterBase.hpp:11,
                 from ../hdf/HDFWriterBase.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFWriterBase.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFWriterBase.hpp:11,
                 from ../hdf/HDFWriterBase.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[26/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o -c ../hdf/HDFZMWMetricsWriter.cpp
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFZMWMetricsWriter.hpp:7,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = float; DSLength = long unsigned int]’:
../hdf/HDFZMWMetricsWriter.cpp:54:27:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFZMWMetricsWriter.cpp:55:30:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWMetricsWriter.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.hpp:6,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[27/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o -c ../hdf/HDFZMWReader.cpp
../hdf/HDFZMWReader.cpp: In constructor ‘HDFZMWReader::HDFZMWReader()’:
../hdf/HDFZMWReader.cpp:4:1: note: the layout of aggregates containing vectors with 4-byte alignment has changed in GCC 5
    4 | HDFZMWReader::HDFZMWReader()
      | ^~~~~~~~~~~~
[28/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o -MF libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o.d -o libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o -c ../hdf/HDFZMWWriter.cpp
In file included from ../hdf/BufferedHDFArray.hpp:217,
                 from ../hdf/HDFZMWWriter.hpp:11,
                 from ../hdf/HDFZMWWriter.cpp:5:
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned int; DSLength = long unsigned int]’:
../hdf/HDFZMWWriter.cpp:149:26:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  146 |     } catch (H5::DataSetIException e) {
      |                                    ^
../hdf/BufferedHDFArrayImpl.hpp: In instantiation of ‘void BufferedHDFArray<T>::Flush(bool, DSLength) [with T = unsigned char; DSLength = long unsigned int]’:
../hdf/HDFZMWWriter.cpp:151:28:   required from here
../hdf/BufferedHDFArrayImpl.hpp:146:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWWriter.hpp:12,
                 from ../hdf/HDFZMWWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWWriter.hpp:10,
                 from ../hdf/HDFZMWWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[29/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -c ../alignment/algorithms/alignment/sdp/SDPFragment.cpp
[30/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -c ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/powerpc64le-linux-gnu/bits/c++allocator.h:33,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/allocator.h:46,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/string:41,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:4,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[31/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -c ../alignment/algorithms/alignment/AlignmentUtils.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/powerpc64le-linux-gnu/bits/c++allocator.h:33,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/allocator.h:46,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/string:41,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:4,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[32/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -c ../alignment/algorithms/alignment/BaseScoreFunction.cpp
[33/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -c ../alignment/algorithms/alignment/ExtendAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/powerpc64le-linux-gnu/bits/c++allocator.h:33,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/allocator.h:46,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/vector:64,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:6,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[34/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -c ../alignment/algorithms/alignment/GuidedAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/powerpc64le-linux-gnu/bits/c++allocator.h:33,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/allocator.h:46,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/string:41,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/locale_classes.h:40,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/ios_base.h:41,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/ios:42,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/ostream:38,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:6,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[35/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -c ../alignment/algorithms/alignment/IDSScoreFunction.cpp
[36/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o -c ../alignment/algorithms/alignment/KBandAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/powerpc64le-linux-gnu/bits/c++allocator.h:33,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/allocator.h:46,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/vector:64,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[37/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -c ../alignment/algorithms/alignment/QualityValueScoreFunction.cpp
[38/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -c ../alignment/algorithms/alignment/ScoreMatrices.cpp
[39/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -c ../alignment/algorithms/alignment/StringToScoreMatrix.cpp
[40/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -c ../alignment/algorithms/anchoring/BWTSearch.cpp
[41/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -c ../alignment/algorithms/anchoring/ClusterProbability.cpp
[42/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o -c ../alignment/algorithms/anchoring/Coordinate.cpp
[43/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -c ../alignment/algorithms/anchoring/FindMaxInterval.cpp
[44/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o -c ../alignment/algorithms/sorting/DifferenceCovers.cpp
[45/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o -c ../alignment/algorithms/sorting/LightweightSuffixArray.cpp
[46/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o -c ../alignment/algorithms/sorting/MultikeyQuicksort.cpp
[47/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o -MF libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o.d -o libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o -c ../alignment/algorithms/sorting/qsufsort.cpp
[48/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o -c ../alignment/datastructures/alignment/AlignmentCandidate.cpp
[49/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o -c ../alignment/datastructures/alignment/AlignmentContext.cpp
[50/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o -c ../alignment/datastructures/alignment/Alignment.cpp
../alignment/datastructures/alignment/Alignment.cpp: In member function ‘void blasr::Alignment::CopyStats(blasr::Alignment&)’:
../alignment/datastructures/alignment/Alignment.cpp:35:47: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   35 |     AlignmentStats::CopyStats((AlignmentStats)rhs);
      |                                               ^~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/datastructures/alignment/Alignment.cpp:2:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
../alignment/datastructures/alignment/Alignment.cpp:33:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
   33 | void Alignment::CopyStats(Alignment &rhs)
      |      ^~~~~~~~~
[51/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o -c ../alignment/datastructures/alignment/AlignmentMap.cpp
[52/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o -c ../alignment/datastructures/alignment/AlignmentStats.cpp
[53/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o -c ../alignment/datastructures/alignment/CmpFile.cpp
[54/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o -c ../alignment/datastructures/alignment/FilterCriteria.cpp
[55/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o -c ../alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.cpp
[56/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o -c ../alignment/datastructures/alignmentset/SAMQVConversion.cpp
[57/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o -c ../alignment/datastructures/alignmentset/SAMSupplementalQVList.cpp
[58/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o -c ../alignment/datastructures/anchoring/AnchorParameters.cpp
../alignment/datastructures/anchoring/AnchorParameters.cpp: In member function ‘AnchorParameters& AnchorParameters::Assign(const AnchorParameters&)’:
../alignment/datastructures/anchoring/AnchorParameters.cpp:22:19: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
   22 | AnchorParameters &AnchorParameters::Assign(const AnchorParameters &rhs)
      |                   ^~~~~~~~~~~~~~~~
[59/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o -c ../alignment/datastructures/anchoring/ClusterList.cpp
[60/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o -c ../alignment/datastructures/anchoring/MatchPos.cpp
[61/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -MF libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o.d -o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -c ../alignment/datastructures/anchoring/WeightedInterval.cpp
../alignment/datastructures/anchoring/WeightedInterval.cpp: In member function ‘void WeightedInterval::Init(int, int, int, int, float)’:
../alignment/datastructures/anchoring/WeightedInterval.cpp:5:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
    5 | void WeightedInterval::Init(int _size, int _start, int _end, int _readIndex, float _pValue)
      |      ^~~~~~~~~~~~~~~~
[62/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o -MF libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o.d -o libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o -c ../alignment/files/BaseSequenceIO.cpp
[63/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o -MF libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o.d -o libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o -c ../alignment/files/CCSIterator.cpp
[64/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o -MF libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o.d -o libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o -c ../alignment/files/FragmentCCSIterator.cpp
[65/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o -c ../pbdata/FASTASequence.cpp
[66/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o -MF libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o.d -o libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o -c ../alignment/files/ReaderAgglomerate.cpp
../alignment/files/ReaderAgglomerate.cpp: In member function ‘int ReaderAgglomerate::Initialize(bool, bool)’:
../alignment/files/ReaderAgglomerate.cpp:267:37: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=]
  267 |             } catch (std::exception e) {
      |                                     ^
In file included from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(FASTASequence&) [with T_Sequence = SMRTSequence]’:
../alignment/files/ReaderAgglomerate.cpp:360:50:   required from here
../hdf/HDFBasReader.hpp:602:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  602 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(FASTQSequence&) [with T_Sequence = SMRTSequence]’:
../alignment/files/ReaderAgglomerate.cpp:401:50:   required from here
../hdf/HDFBasReader.hpp:647:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  647 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’:
../alignment/files/ReaderAgglomerate.cpp:516:50:   required from here
../hdf/HDFBasReader.hpp:760:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  760 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNextBases(SMRTSequence&, bool) [with T_Sequence = SMRTSequence]’:
../alignment/files/ReaderAgglomerate.cpp:611:64:   required from here
../hdf/HDFBasReader.hpp:691:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  691 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../alignment/files/ReaderAgglomerate.hpp:9,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFCCSReader.hpp: In instantiation of ‘int HDFCCSReader<T_Sequence>::GetNext(T_Sequence&) [with T_Sequence = CCSSequence]’:
../alignment/files/ReaderAgglomerate.cpp:664:50:   required from here
../hdf/HDFCCSReader.hpp:270:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  270 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../alignment/files/ReaderAgglomerate.cpp:250:56:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../alignment/files/ReaderAgglomerate.cpp: In member function ‘int ReaderAgglomerate::GetNextBases(SMRTSequence&, bool)’:
../alignment/files/ReaderAgglomerate.cpp:624:81: warning: this statement may fall through [-Wimplicit-fallthrough=]
  624 |             std::cout << "ERROR! Can not GetNextBases from a BAM File." << std::endl;
      |                                                                                 ^~~~
../alignment/files/ReaderAgglomerate.cpp:626:9: note: here
  626 |         case FileType::Fourbit:
      |         ^~~~
../alignment/files/ReaderAgglomerate.cpp: In member function ‘int ReaderAgglomerate::GetNext(CCSSequence&)’:
../alignment/files/ReaderAgglomerate.cpp:669:83: warning: this statement may fall through [-Wimplicit-fallthrough=]
  669 |             std::cout << "ERROR! Could not read BamRecord as CCSSequence" << std::endl;
      |                                                                                   ^~~~
../alignment/files/ReaderAgglomerate.cpp:671:9: note: here
  671 |         case FileType::Fourbit:
      |         ^~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72,
                 from ../hdf/HDFBasReader.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:611:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
  611 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
[67/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o -c ../alignment/format/CompareSequencesPrinter.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:39:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/powerpc64le-linux-gnu/bits/c++allocator.h:33,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/allocator.h:46,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/string:41,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/locale_classes.h:40,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/ios_base.h:41,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/ios:42,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/istream:38,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/fstream:38,
                 from ../alignment/format/CompareSequencesPrinter.hpp:4,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/ext/new_allocator.h:150:4: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  150 |  { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[68/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o -c ../alignment/format/IntervalPrinter.cpp
[69/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o -c ../alignment/format/SAMHeaderPrinter.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from /usr/include/pbbam/BamHeader.h:14,
                 from /usr/include/pbbam/BamRecord.h:18,
                 from ../pbdata/DNASequence.hpp:17,
                 from ../pbdata/FASTQSequence.hpp:4,
                 from ../pbdata/SMRTSequence.hpp:12,
                 from ../alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp:5,
                 from ../alignment/format/SAMHeaderPrinter.hpp:12,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/pbbam/ReadGroupInfo.h: In copy constructor ‘PacBio::BAM::ReadGroupInfo::ReadGroupInfo(const PacBio::BAM::ReadGroupInfo&)’:
/usr/include/pbbam/ReadGroupInfo.h:98:20: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
   98 | class PBBAM_EXPORT ReadGroupInfo
      |                    ^~~~~~~~~~~~~
[70/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o -c ../alignment/format/SAMPrinter.cpp
[71/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o -MF libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o.d -o libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o -c ../alignment/format/SummaryPrinter.cpp
[72/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -MF libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -c ../alignment/query/PbiFilterZmwGroupQuery.cpp
[73/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o -MF libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o -c ../alignment/query/SequentialZmwGroupQuery.cpp
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In file included from /usr/powerpc64le-linux-gnu/include/c++/10/cassert:44,
                 from ../alignment/statistics/StatUtils.hpp:5,
                 from ../alignment/simulator/CDFMap.hpp:8,
                 from ../alignment/simulator/LengthHistogram.hpp:8,
                 from ../alignment/simulator/LengthHistogram.cpp:1:
../alignment/simulator/CDFMap.hpp: In instantiation of ‘int CDFMap<T_Data>::SelectRandomValue(T_Data&) [with T_Data = int]’:
../alignment/simulator/LengthHistogram.cpp:27:94:   required from here
../alignment/simulator/CDFMap.hpp:37:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
   37 |     assert(cdf.size() >= 0);
      |            ~~~~~~~~~~~^~~~
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[95/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_loadpulses_MetricField.cpp.o -MF libblasr.so.5.3.4.p/pbdata_loadpulses_MetricField.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_loadpulses_MetricField.cpp.o -c ../pbdata/loadpulses/MetricField.cpp
[96/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -MF libblasr.so.5.3.4.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -c ../pbdata/loadpulses/MovieAlnIndexLookupTable.cpp
[97/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_metagenome_TitleTable.cpp.o -MF libblasr.so.5.3.4.p/pbdata_metagenome_TitleTable.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_metagenome_TitleTable.cpp.o -c ../pbdata/metagenome/TitleTable.cpp
[98/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_qvs_BlasrQualityValue.cpp.o -MF libblasr.so.5.3.4.p/pbdata_qvs_BlasrQualityValue.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_qvs_BlasrQualityValue.cpp.o -c ../pbdata/qvs/BlasrQualityValue.cpp
[99/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_qvs_QualityTransform.cpp.o -MF libblasr.so.5.3.4.p/pbdata_qvs_QualityTransform.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_qvs_QualityTransform.cpp.o -c ../pbdata/qvs/QualityTransform.cpp
[100/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_AcqParams.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_AcqParams.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_AcqParams.cpp.o -c ../pbdata/reads/AcqParams.cpp
[101/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_BaseFile.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_BaseFile.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_BaseFile.cpp.o -c ../pbdata/reads/BaseFile.cpp
[102/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o -c ../pbdata/reads/HoleXY.cpp
[103/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o -c ../pbdata/reads/PulseBaseCommon.cpp
[104/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o -c ../pbdata/reads/PulseFile.cpp
[105/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o -c ../pbdata/reads/ReadType.cpp
[106/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o -c ../pbdata/reads/RegionAnnotation.cpp
[107/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o -c ../pbdata/reads/RegionAnnotations.cpp
../pbdata/reads/RegionAnnotations.cpp: In constructor ‘RegionAnnotations::RegionAnnotations(UInt, const std::vector<RegionAnnotation>&, const std::vector<T_RegionType>&)’:
../pbdata/reads/RegionAnnotations.cpp:14:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   14 |     for (auto annotation : annotations) {
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<RegionAnnotation> RegionAnnotations::RegionAnnotationsOfType(RegionType) const’:
../pbdata/reads/RegionAnnotations.cpp:37:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   37 |         for (auto ra : table_)
      |                        ^~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘RegionAnnotation RegionAnnotations::TheHQRegion() const’:
../pbdata/reads/RegionAnnotations.cpp:65:22: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   65 |         return hqs_[0];
      |                      ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
In file included from ../pbdata/reads/RegionAnnotations.cpp:3:
../pbdata/PrettyException.hpp:8:5: warning: macro expands to multiple statements [-Wmultistatement-macros]
    8 |     std::cerr << "Exception in file '" << __FILE__ << "', on line '" << __LINE__                   \
      |     ^~~
../pbdata/reads/RegionAnnotations.cpp:67:9: note: in expansion of macro ‘BLASR_THROW’
   67 |         BLASR_THROW("Zmw has more than one HQRegion");
      |         ^~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp:66:5: note: some parts of macro expansion are not guarded by this ‘else’ clause
   66 |     else
      |     ^~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::AdapterIntervals() const’:
../pbdata/reads/RegionAnnotations.cpp:84:34: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   84 |     for (auto adapter : Adapters()) {
      |                                  ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::SubreadIntervals(DNALength, bool, bool) const’:
../pbdata/reads/RegionAnnotations.cpp:102:42: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  102 |             for (auto adapter : Adapters()) {
      |                                          ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp:121:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  121 |     for (auto insert : inserts) {
      |                        ^~~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
[108/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o -c ../pbdata/reads/RegionTable.cpp
[109/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o -c ../pbdata/reads/RegionTypeMap.cpp
[110/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o -c ../pbdata/reads/ScanData.cpp
[111/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o -MF libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o -c ../pbdata/reads/ZMWGroupEntry.cpp
[112/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o -MF libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o -c ../pbdata/saf/AlnGroup.cpp
[113/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o -MF libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o -c ../pbdata/saf/MovieInfo.cpp
[114/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o -MF libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o -c ../pbdata/saf/RefGroup.cpp
[115/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_saf_RefInfo.cpp.o -MF libblasr.so.5.3.4.p/pbdata_saf_RefInfo.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_saf_RefInfo.cpp.o -c ../pbdata/saf/RefInfo.cpp
[116/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o -MF libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o -c ../pbdata/sam/ReadGroup.cpp
[117/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_sam_ReferenceSequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_sam_ReferenceSequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_sam_ReferenceSequence.cpp.o -c ../pbdata/sam/ReferenceSequence.cpp
[118/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o -MF libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o -c ../pbdata/sam/SAMAlignment.cpp
[119/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o -MF libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o -c ../pbdata/sam/SAMHeader.cpp
[120/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o -MF libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o -c ../pbdata/sam/SAMKeywordValuePair.cpp
[121/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o -MF libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o -c ../pbdata/utils/BitUtils.cpp
[122/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o -MF libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o -c ../pbdata/utils/SMRTReadUtils.cpp
[123/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o -MF libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o -c ../pbdata/utils/SMRTTitle.cpp
[124/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o -MF libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o -c ../pbdata/utils/TimeUtils.cpp
[125/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o -MF libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o -c ../pbdata/BlasrFASTAReader.cpp
In file included from ../pbdata/FASTAReader.hpp:7,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
../pbdata/FASTASequence.hpp: In instantiation of ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = FASTASequence; _Args = {FASTASequence}]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_uninitialized.h:91:18:   required from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<FASTASequence*>; _ForwardIterator = FASTASequence*; bool _TrivialValueTypes = false]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_uninitialized.h:150:15:   required from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<FASTASequence*>; _ForwardIterator = FASTASequence*]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_uninitialized.h:325:37:   required from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<FASTASequence*>; _ForwardIterator = FASTASequence*; _Tp = FASTASequence]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_uninitialized.h:347:2:   required from ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = std::allocator<FASTASequence>]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:659:48:   required from ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::size_type = long unsigned int]’
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:940:4:   required from ‘void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::size_type = long unsigned int]’
../pbdata/BlasrFASTAReader.cpp:441:26:   required from here
../pbdata/FASTASequence.hpp:19:7: warning: implicitly-declared ‘constexpr DNASequence::DNASequence(const DNASequence&)’ is deprecated [-Wdeprecated-copy]
   19 | class FASTASequence : public DNASequence
      |       ^~~~~~~~~~~~~
In file included from ../pbdata/FASTASequence.hpp:13,
                 from ../pbdata/FASTAReader.hpp:7,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
../pbdata/DNASequence.hpp:51:18: note: because ‘DNASequence’ has user-provided ‘DNASequence& DNASequence::operator=(const DNASequence&)’
   51 |     DNASequence &operator=(const DNASequence &rhs);
      |                  ^~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/bits/alloc_traits.h:33,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/ext/alloc_traits.h:34,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/bits/basic_string.h:40,
                 from /usr/powerpc64le-linux-gnu/include/c++/10/string:55,
                 from ../pbdata/FASTAReader.hpp:5,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_construct.h:109:7: note: synthesized method ‘constexpr FASTASequence::FASTASequence(const FASTASequence&)’ first required here
  109 |     { ::new(static_cast<void*>(__p)) _Tp(std::forward<_Args>(__args)...); }
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[126/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o -MF libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o -c ../pbdata/BlasrFASTQReader.cpp
[127/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_CCSSequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_CCSSequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_CCSSequence.cpp.o -c ../pbdata/CCSSequence.cpp
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72,
                 from /usr/include/pbbam/BamRecord.h:12,
                 from ../pbdata/DNASequence.hpp:17,
                 from ../pbdata/FASTQSequence.hpp:4,
                 from ../pbdata/SMRTSequence.hpp:12,
                 from ../pbdata/CCSSequence.hpp:5,
                 from ../pbdata/CCSSequence.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:611:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
  611 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
[128/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_ChangeListID.cpp.o -MF libblasr.so.5.3.4.p/pbdata_ChangeListID.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_ChangeListID.cpp.o -c ../pbdata/ChangeListID.cpp
[129/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_CommandLineParser.cpp.o -MF libblasr.so.5.3.4.p/pbdata_CommandLineParser.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_CommandLineParser.cpp.o -c ../pbdata/CommandLineParser.cpp
[130/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_DNASequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_DNASequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_DNASequence.cpp.o -c ../pbdata/DNASequence.cpp
[131/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_FASTQSequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_FASTQSequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_FASTQSequence.cpp.o -c ../pbdata/FASTQSequence.cpp
../pbdata/FASTQSequence.cpp: In constructor ‘FASTQSequence::FASTQSequence()’:
../pbdata/FASTQSequence.cpp:87:1: note: the layout of aggregates containing vectors with 4-byte alignment has changed in GCC 5
   87 | FASTQSequence::FASTQSequence() : FASTASequence()
      | ^~~~~~~~~~~~~
[132/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_GFFFile.cpp.o -MF libblasr.so.5.3.4.p/pbdata_GFFFile.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_GFFFile.cpp.o -c ../pbdata/GFFFile.cpp
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72,
                 from ../pbdata/GFFFile.hpp:8,
                 from ../pbdata/GFFFile.cpp:1:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {GFFEntry}; _Tp = GFFEntry; _Alloc = std::allocator<GFFEntry>]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
[133/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_MD5Utils.cpp.o -MF libblasr.so.5.3.4.p/pbdata_MD5Utils.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_MD5Utils.cpp.o -c ../pbdata/MD5Utils.cpp
[134/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_NucConversion.cpp.o -MF libblasr.so.5.3.4.p/pbdata_NucConversion.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_NucConversion.cpp.o -c ../pbdata/NucConversion.cpp
[135/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o -c ../pbdata/PackedDNASequence.cpp
[136/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o -MF libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o -c ../pbdata/ReverseCompressIndex.cpp
../pbdata/ReverseCompressIndex.cpp: In member function ‘void ReverseCompressIndex::ShallowCopy(ReverseCompressIndex&)’:
../pbdata/ReverseCompressIndex.cpp:41:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
   41 | void ReverseCompressIndex::ShallowCopy(ReverseCompressIndex &rhs)
      |      ^~~~~~~~~~~~~~~~~~~~
[137/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o -MF libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o -c ../pbdata/SMRTSequence.cpp
In file included from ../pbdata/SMRTSequence.cpp:3:
../pbdata/SMRTSequence.cpp: In member function ‘float SMRTSequence::HQRegionSnr(char) const’:
../pbdata/PrettyException.hpp:8:5: warning: macro expands to multiple statements [-Wmultistatement-macros]
    8 |     std::cerr << "Exception in file '" << __FILE__ << "', on line '" << __LINE__                   \
      |     ^~~
../pbdata/SMRTSequence.cpp:329:9: note: in expansion of macro ‘BLASR_THROW’
  329 |         BLASR_THROW("Base must be in A, C, G, T");
      |         ^~~~~~~~~~~
../pbdata/SMRTSequence.cpp:328:5: note: some parts of macro expansion are not guarded by this ‘else’ clause
  328 |     else
      |     ^~~~
../pbdata/SMRTSequence.cpp: In member function ‘void SMRTSequence::MadeFromSubreadsAsPolymerase(const std::vector<SMRTSequence>&)’:
../pbdata/SMRTSequence.cpp:353:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  353 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
../pbdata/SMRTSequence.cpp:378:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  378 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
../pbdata/SMRTSequence.cpp: In member function ‘void SMRTSequence::Copy(const SMRTSequence&, DNALength, DNALength)’:
../pbdata/SMRTSequence.cpp:185:25: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
  185 |     subreadStart_ = rhs.subreadStart_;
      |                     ~~~~^~~~~~~~~~~~~
[138/187] /usr/bin/powerpc64le-linux-gnu-g++ -Ilibblasr.so.5.3.4.p -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o -MF libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o.d -o libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o -c ../pbdata/StringUtils.cpp
[139/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -c ../unittest/hdf/HDFUtils_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../unittest/hdf/HDFUtils_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../unittest/hdf/HDFUtils_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[140/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -c ../unittest/hdf/HDFScanDataReader_gtest.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[141/187] /usr/bin/powerpc64le-linux-gnu-g++  -o libblasr.so.5.3.4 libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.4.p/hdf_HDFData.cpp.o libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.4.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.4.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.4.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.4.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.4.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.4.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.4.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.4.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.4.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.4.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.4.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.4.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.4.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.4.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.4.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.4.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.4.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.4.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.4.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.4.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.4.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.4.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.4.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.4.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.4.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.4.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.4.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.4.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.4.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.4.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.4.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.4.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.4.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.4.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libblasr.so.5.3.4 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wl,-z,relro -Wl,-z,now /usr/lib/powerpc64le-linux-gnu/libpbbam.so /usr/lib/powerpc64le-linux-gnu/libpbcopper.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libhts.so -lrt /usr/lib/powerpc64le-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/powerpc64le-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/powerpc64le-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/powerpc64le-linux-gnu/hdf5/serial/libhdf5.so -Wl,--end-group
[142/187] /usr/bin/meson --internal symbolextractor /<<PKGBUILDDIR>>/obj-powerpc64le-linux-gnu libblasr.so.5.3.4 libblasr.so.5.3.4 libblasr.so.5.3.4.p/libblasr.so.5.3.4.symbols --cross-host=linux
[143/187] rm -f libblasr.a && /usr/bin/powerpc64le-linux-gnu-ar csrD libblasr.a libblasr.so.5.3.4.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.4.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.4.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.4.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.4.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.4.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.4.p/hdf_HDFData.cpp.o libblasr.so.5.3.4.p/hdf_HDFFile.cpp.o libblasr.so.5.3.4.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.4.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.4.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.4.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.4.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.4.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.4.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.4.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.4.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.4.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.4.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.4.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.4.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.4.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.4.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.4.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.4.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.4.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.4.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.4.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.4.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.4.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.4.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.4.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.4.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.4.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.4.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.4.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.4.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.4.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.4.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.4.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.4.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.4.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.4.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.4.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.4.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.4.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.4.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.4.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.4.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.4.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.4.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.4.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.4.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.4.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.4.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.4.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.4.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.4.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.4.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.4.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.4.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.4.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.4.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.4.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.4.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.4.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.4.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.4.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.4.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.4.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.4.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.4.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.4.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.4.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.4.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.4.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.4.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.4.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.4.p/pbdata_StringUtils.cpp.o
[144/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[145/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -c ../unittest/hdf/HDFBasReader_gtest.cpp
In file included from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’:
../unittest/hdf/HDFBasReader_gtest.cpp:47:27:   required from here
../hdf/HDFBasReader.hpp:760:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  760 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(FASTQSequence&) [with T_Sequence = SMRTSequence]’:
../hdf/HDFBasReader.hpp:726:40:   required from ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’
../unittest/hdf/HDFBasReader_gtest.cpp:47:27:   required from here
../hdf/HDFBasReader.hpp:647:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  647 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFBasReader_gtest.cpp:33:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[146/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[147/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -c ../unittest/alignment/files/CCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/CCSIterator_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/CCSIterator_gtest.cpp:23:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[148/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -c ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[149/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMPrinter_gtest.cpp
[150/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMHeaderPrinter_gtest.cpp
[151/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/CmpIndexedStringTable_gtest.cpp
[152/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/AlignmentMap_gtest.cpp
[153/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/SequentialZmwGroupQuery_gtest.cpp
[154/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/PbiFilterZmwGroupQuery_gtest.cpp
[155/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -c ../unittest/alignment/utils/FileUtils_gtest.cpp
[156/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -c ../unittest/alignment/utils/RangeUtils_gtest.cpp
[157/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -c ../unittest/alignment/utils/RegionUtils_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../unittest/alignment/utils/RegionUtils_gtest.cpp: In member function ‘virtual void RegionUtilTestFixture::SetUp()’:
../unittest/alignment/utils/RegionUtils_gtest.cpp:39:10: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
   39 |     void SetUp()
      |          ^~~~~
[158/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -c ../unittest/hdf/HDFScanDataWriter_gtest.cpp
[159/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -c ../unittest/hdf/HDFCCSReader_gtest.cpp
In file included from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFCCSReader.hpp: In instantiation of ‘int HDFCCSReader<T_Sequence>::GetNext(T_Sequence&) [with T_Sequence = CCSSequence]’:
../unittest/hdf/HDFCCSReader_gtest.cpp:45:27:   required from here
../hdf/HDFCCSReader.hpp:270:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  270 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’:
../hdf/HDFCCSReader.hpp:217:51:   required from ‘int HDFCCSReader<T_Sequence>::GetNext(T_Sequence&) [with T_Sequence = CCSSequence]’
../unittest/hdf/HDFCCSReader_gtest.cpp:45:27:   required from here
../hdf/HDFBasReader.hpp:760:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  760 |         } catch (H5::DataSetIException e) {
      |                                        ^
../hdf/HDFBasReader.hpp: In instantiation of ‘int T_HDFBasReader<T_Sequence>::GetNext(FASTQSequence&) [with T_Sequence = SMRTSequence]’:
../hdf/HDFBasReader.hpp:726:40:   required from ‘int T_HDFBasReader<T_Sequence>::GetNext(SMRTSequence&) [with T_Sequence = SMRTSequence]’
../hdf/HDFCCSReader.hpp:217:51:   required from ‘int HDFCCSReader<T_Sequence>::GetNext(T_Sequence&) [with T_Sequence = CCSSequence]’
../unittest/hdf/HDFCCSReader_gtest.cpp:45:27:   required from here
../hdf/HDFBasReader.hpp:647:40: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  647 |         } catch (H5::DataSetIException e) {
      |                                        ^
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFCCSReader.hpp:93:57:   required from ‘int HDFCCSReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFCCSReader_gtest.cpp:39:5:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[160/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -c ../unittest/hdf/HDFZMWReader_gtest.cpp
[161/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -c ../unittest/hdf/HDFPlsReader_gtest.cpp
In file included from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFPlsReader.hpp: In member function ‘int HDFPlsReader::GetNextFlattenedToBase(SMRTSequence&, int*)’:
../hdf/HDFPlsReader.hpp:549:36: warning: catching polymorphic type ‘class H5::DataSetIException’ by value [-Wcatch-value=]
  549 |         } catch (DataSetIException e) {
      |                                    ^
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[162/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -c ../unittest/hdf/HDF2DArray_gtest.cpp
[163/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -c ../unittest/pbdata/metagenome/TitleTable_gtest.cpp
[164/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -c ../unittest/pbdata/saf/RefInfo_gtest.cpp
[165/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -c ../unittest/pbdata/saf/MovieInfo_gtest.cpp
[166/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -c ../unittest/pbdata/saf/AlnGroup_gtest.cpp
[167/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -c ../unittest/pbdata/utils/SMRTTitle_gtest.cpp
[168/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -c ../unittest/pbdata/qvs/QualityValueVector_gtest.cpp
[169/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -c ../unittest/pbdata/reads/RegionTypeMap_gtest.cpp
[170/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -c ../unittest/pbdata/reads/ReadType_gtest.cpp
[171/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -c ../unittest/pbdata/reads/RegionAnnotations_gtest.cpp
[172/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -c ../unittest/pbdata/ScanData_gtest.cpp
[173/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -c ../unittest/pbdata/StringUtils_gtest.cpp
[174/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -c ../unittest/pbdata/SMRTSequence_gtest.cpp
../unittest/pbdata/SMRTSequence_gtest.cpp: In function ‘SMRTSequence _make_a_smrt_read_(const string&, const UInt&, DNALength, DNALength, const string&, bool, bool, bool, int, int, char, int, char)’:
../unittest/pbdata/SMRTSequence_gtest.cpp:66:12: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
   66 |     return smrt;
      |            ^~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymerase_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:133:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:133:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletion_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:192:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:192:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletionNoSubstitution_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:246:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:246:54: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |                                                      ^
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
In file included from /usr/include/gtest/gtest.h:62,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
../unittest/pbdata/SMRTSequence_gtest.cpp:221:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
  221 | TEST_F(SMRTSequenceTest, MadeFromSubreadsAsPolymeraseNoInsertionNoDeletionNoSubstitution)
      |        ^~~~~~~~~~~~~~~~
[175/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o -c ../unittest/pbdata/NucConversion_gtest.cpp
[176/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o -c ../unittest/pbdata/VectorUtils_gtest.cpp
[177/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o -c ../unittest/pbdata/defs_gtest.cpp
[178/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o -c ../unittest/pbdata/FASTASequence_gtest.cpp
[179/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o -c ../unittest/pbdata/ChangeListID_gtest.cpp
[180/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -c ../unittest/pbdata/FASTQReader_gtest.cpp
[181/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -c ../unittest/pbdata/SeqUtils_gtest.cpp
[182/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -c ../unittest/pbdata/CCSSequence_gtest.cpp
In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72,
                 from ../unittest/pbdata/CCSSequence_gtest.cpp:21:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>]’:
/usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:611:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5
  611 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
[183/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -c ../unittest/pbdata/utils_gtest.cpp
[184/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -c ../unittest/pbdata/FASTQSequence_gtest.cpp
[185/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -c ../unittest/pbdata/DNASequence_gtest.cpp
../unittest/pbdata/DNASequence_gtest.cpp: In member function ‘virtual void DNASequenceTest_Constructor_Test::TestBody()’:
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
../unittest/pbdata/DNASequence_gtest.cpp:68:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
   68 |         thisNuc[i] = atgc[i];
../unittest/pbdata/DNASequence_gtest.cpp:66:37: note: at offset 0 to an object with size 0 allocated by ‘operator new []’ here
   66 |     thisNuc = new Nucleotide[thisLen];
      |                                     ^
[186/187] /usr/bin/powerpc64le-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include -I/usr/include/hdf5/serial -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -c ../unittest/pbdata/FASTAReader_gtest.cpp
[187/187] /usr/bin/powerpc64le-linux-gnu-g++  -o unittest/libblasr_unittest unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wl,-z,relro -Wl,-z,now -Wl,--start-group libblasr.so.5.3.4 /usr/lib/powerpc64le-linux-gnu/libpbbam.so /usr/lib/powerpc64le-linux-gnu/libpbcopper.so /usr/lib/powerpc64le-linux-gnu/libz.so /usr/lib/powerpc64le-linux-gnu/libhts.so -lrt /usr/lib/powerpc64le-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/powerpc64le-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/powerpc64le-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/powerpc64le-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/powerpc64le-linux-gnu/libgtest_main.a -lpthread /usr/lib/powerpc64le-linux-gnu/libgtest.a -Wl,--end-group '-Wl,-rpath,$ORIGIN/..' -Wl,-rpath-link,/<<PKGBUILDDIR>>/obj-powerpc64le-linux-gnu/
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
	cd obj-powerpc64le-linux-gnu && DESTDIR=/<<BUILDDIR>>/pbseqlib-5.3.4\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install
[0/1] Installing files.
Installing libblasr.so.5.3.4 to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/powerpc64le-linux-gnu
Installing libblasr.a to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/powerpc64le-linux-gnu
Installing /<<PKGBUILDDIR>>/obj-powerpc64le-linux-gnu/LibBlasrConfig.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollection.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollectionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAtom.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAttributable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBaseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBaxWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCCSReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpExperimentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRefAlignmentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRootGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpSupportedFields.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCommonFG.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFConfig.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFFileLogGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFMovieInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFNewBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseDataFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRefGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRefInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFSentinalFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFSMRTSequenceReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFWriteBuffer.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFWriterBase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWMetricsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPColumn.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPFragment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineGuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineKBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentFormats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/BaseScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ExtendAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/FullQVAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaper.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaperImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/IDSScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/KBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/OneGapAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/QualityValueScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ScoreMatrices.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/StringToScoreMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpoint.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpointImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearch.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearchImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ClusterProbability.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/Coordinate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChain.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChainImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISQValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTree.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchors.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/compare/CompareStrings.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/compare
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/DifferenceCovers.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/Karkkainen.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/LightweightSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/MultikeyQuicksort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/qsufsort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/bwt/BWT.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/Occ.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/PackedHash.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/Pos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignedPair.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentCandidate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentContext.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentGapList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Alignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentStats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/ByteAlignment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpIndexedStringTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpReadGroupTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpRefSeqTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/FilterCriteria.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Path.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMQVConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/AnchorParameters.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/ClusterList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/MatchPos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/WeightedInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/files/BaseSequenceIO.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/CCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/FragmentCCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerateImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/IntervalPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMHeaderPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/StickAlignmentPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SummaryPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/VulgarPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/XMLPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/ipc/SharedMemoryAllocator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/ipc
Installing /<<PKGBUILDDIR>>/alignment/query/PbiFilterZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query
Installing /<<PKGBUILDDIR>>/alignment/query/SequentialZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query
Installing /<<PKGBUILDDIR>>/alignment/qvs/QualityValueProfile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/qvs
Installing /<<PKGBUILDDIR>>/alignment/simulator/CDFMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextOutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/LengthHistogram.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleListSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/QualitySample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/statistics/AnchorDistributionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/cdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/LookupAnchorDistribution.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/pdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulatorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/LCPTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SharedSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/ssort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArrayTypes.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/tuples/BaseTuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/CompressedDNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/CountedTuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTableImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/tuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMask.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatching.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatchingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleOperations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleTranslations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/utils/FileOfFileNames.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/FileUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/LogUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/PhredUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RangeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/SimpleXMLUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/MappingMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignmentImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment
Installing /<<PKGBUILDDIR>>/pbdata/amos/AfgBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/amos
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MetricField.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/Matrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/MatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/FindRandomSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/TitleTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/reads/AcqParams.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/HoleXY.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseBaseCommon.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadType.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotation.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotations.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTypeMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ScanData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ZMWGroupEntry.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/MovieInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/CigarString.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReadGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReferenceSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMFlag.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMHeader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePair.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePairImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReaderImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/utils/BitUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTReadUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTTitle.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/TimeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/CCSSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/ChangeListID.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CommandLineParser.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Compare4BitCompressed.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/defs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/DNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Enumerations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTAReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTQReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTQSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/GFFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/MD5Utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/MD5UtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/NucConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PacBioDefs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PackedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PrettyException.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/ReverseCompressIndex.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SMRTSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/StringUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Types.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/utilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/VectorUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/obj-powerpc64le-linux-gnu/meson-private/libblasr.pc to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -p libpbdata-dev usr/include/libblasr/pbdata		usr/include/pbseq
dh_install -p libpbihdf-dev usr/include/libblasr/hdf		usr/include/pbseq
dh_install -p libblasr-dev  usr/include/libblasr/alignment	usr/include/pbseq
find -L debian/*/usr/include/ -type f -regextype posix-egrep -not -regex '.*(hpp|h)$' -delete
find debian/*/usr/include/ -name "*.mk" -delete
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --exclude-la \
	    --override s/libhdf5_serial_cpp103-dev/libhdf5-dev/ \
	    --override s/libpbbam1.6.0-dev/libpbbam-dev/ \
	    --override s/libpbcopper1.8.0-dev/libpbcopper-dev/ \
	    --movedev debian/tmp/usr/include/libblasr usr/include \
	    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/powerpc64le-linux-gnu/pkgconfig \
	    debian/tmp/usr/lib/*/libblasr.so
Library package automatic movement utility
 --> libhdf5-dev package exists.
 --> libpbbam-dev package exists.
 --> libpbcopper-dev package exists.
set -e
install -d -m 755 debian/libblasr-dev/usr/lib/powerpc64le-linux-gnu
install -d -m 755 debian/libblasr5.3.4/usr/lib/powerpc64le-linux-gnu
mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libblasr.a debian/libblasr-dev/usr/lib/powerpc64le-linux-gnu
mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libblasr.so debian/libblasr-dev/usr/lib/powerpc64le-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libblasr.so.5.3.4 debian/libblasr5.3.4/usr/lib/powerpc64le-linux-gnu
PKGDEV=libblasr-dev
PKGSHL=libblasr5.3.4
install -d -m 755 debian/libblasr-dev/usr/include
mv debian/tmp/usr/include/libblasr debian/libblasr-dev/usr/include
install -d -m 755 debian/libblasr-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libblasr-dev/usr/lib/powerpc64le-linux-gnu/pkgconfig
mv debian/libblasr-dev/usr/include/libblasr debian/libblasr-dev/usr/include/pbseq
mv debian/libblasr-dev/usr/include/pbseq/libblasr/LibBlasrConfig.h debian/libblasr-dev/usr/include/pbseq
dh_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a -a
   dh_strip -a -a
   dh_makeshlibs -a -a
   dh_shlibdeps -a -a
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package libblasr-dev: substitution variable ${devlibs:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libblasr-dev' in '../libblasr-dev_5.3.4+dfsg-3_ppc64el.deb'.
dpkg-deb: building package 'libblasr5.3.4' in '../libblasr5.3.4_5.3.4+dfsg-3_ppc64el.deb'.
dpkg-deb: building package 'libblasr5.3.4-dbgsym' in '../libblasr5.3.4-dbgsym_5.3.4+dfsg-3_ppc64el.deb'.
dpkg-deb: building package 'libpbseq' in '../libpbseq_5.3.4+dfsg-3_ppc64el.deb'.
dpkg-deb: building package 'libpbseq-dev' in '../libpbseq-dev_5.3.4+dfsg-3_ppc64el.deb'.
dpkg-deb: building package 'libpbdata-dev' in '../libpbdata-dev_5.3.4+dfsg-3_ppc64el.deb'.
dpkg-deb: building package 'libpbihdf-dev' in '../libpbihdf-dev_5.3.4+dfsg-3_ppc64el.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../pbseqlib_5.3.4+dfsg-3_ppc64el.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-04-29T18:11:01Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


pbseqlib_5.3.4+dfsg-3_ppc64el.changes:
--------------------------------------

Format: 1.8
Date: Mon, 16 Nov 2020 13:47:40 +0100
Source: pbseqlib
Binary: libblasr-dev libblasr5.3.4 libblasr5.3.4-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev
Built-For-Profiles: cross nocheck
Architecture: ppc64el
Version: 5.3.4+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libblasr-dev - tools for aligning PacBio reads to target sequences (development
 libblasr5.3.4 - tools for aligning PacBio reads to target sequences
 libpbdata-dev - tools for handling PacBio sequences (development files)
 libpbihdf-dev - tools for handling PacBio hdf5 files (development files)
 libpbseq   - library for analyzing PacBio sequencing data
 libpbseq-dev - library for analyzing PacBio sequencing data (development files)
Changes:
 pbseqlib (5.3.4+dfsg-3) unstable; urgency=medium
 .
   * Install LibBlasrConfig.h at correct location
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 b5a0c48450bfc45b2ae20a8d0dbde257 40976 libdevel optional libpbdata-dev_5.3.4+dfsg-3_ppc64el.deb
 7bc6d9a2d2775346f25eadd5bce4c4d0 47460 libdevel optional libpbihdf-dev_5.3.4+dfsg-3_ppc64el.deb
 7e6a0fc9084a0e342ab6b5d68f08bec4 5224 libdevel optional libpbseq-dev_5.3.4+dfsg-3_ppc64el.deb
 29ad3ada6643289559b7a5724c02975f 5204 science optional libpbseq_5.3.4+dfsg-3_ppc64el.deb
 a93d42aa90769fd3e5809a88e522ac78 8898 science optional pbseqlib_5.3.4+dfsg-3_ppc64el.buildinfo

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: pbseqlib
Binary: libblasr-dev libblasr5.3.4 libblasr5.3.4-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev
Architecture: ppc64el
Version: 5.3.4+dfsg-3
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Thu, 29 Apr 2021 18:11:01 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 adduser (= 3.118),
 apt (= 2.2.3),
 autoconf (= 2.69-14),
 automake (= 1:1.16.3-2),
 autopoint (= 0.21-4),
 autotools-dev (= 20180224.1+nmu1),
 base-files (= 11.1),
 base-passwd (= 3.5.49),
 bash (= 5.1-2+b1),
 binutils (= 2.35.2-2),
 binutils-common (= 2.35.2-2),
 binutils-x86-64-linux-gnu (= 2.35.2-2),
 bsdextrautils (= 2.36.1-7),
 bsdutils (= 1:2.36.1-7),
 build-essential (= 12.9),
 bzip2 (= 1.0.8-4),
 cmake (= 3.18.4-2),
 cmake-data (= 3.18.4-2),
 coreutils (= 8.32-4+b1),
 cpp (= 4:10.2.1-1),
 cpp-10 (= 10.2.1-6),
 d-shlibs (= 0.98),
 dash (= 0.5.11+git20210120+802ebd4-1),
 debconf (= 1.5.76),
 debhelper (= 13.3.4),
 debian-archive-keyring (= 2021.1.1),
 debianutils (= 4.11.2),
 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.11.0-1),
 diffutils (= 1:3.7-5),
 dpkg (= 1.20.9),
 dpkg-dev (= 1.20.9),
 dwz (= 0.14-1),
 file (= 1:5.39-3),
 findutils (= 4.8.0-1),
 g++ (= 4:10.2.1-1),
 g++-10 (= 10.2.1-6),
 gcc (= 4:10.2.1-1),
 gcc-10 (= 10.2.1-6),
 gcc-10-base (= 10.2.1-6),
 gettext (= 0.21-4),
 gettext-base (= 0.21-4),
 googletest (= 1.10.0.20201025-1.1),
 gpgv (= 2.2.27-2),
 grep (= 3.6-1),
 groff-base (= 1.22.4-6),
 gzip (= 1.10-4),
 hdf5-helpers (= 1.10.6+repack-2),
 hostname (= 3.23),
 init-system-helpers (= 1.60),
 intltool-debian (= 0.35.0+20060710.5),
 libacl1 (= 2.2.53-10),
 libaec-dev (= 1.0.4-2),
 libaec0 (= 1.0.4-2),
 libapt-pkg6.0 (= 2.2.3),
 libarchive-zip-perl (= 1.68-1),
 libarchive13 (= 3.4.3-2+b1),
 libasan6 (= 10.2.1-6),
 libatomic1 (= 10.2.1-6),
 libattr1 (= 1:2.4.48-6),
 libaudit-common (= 1:3.0-2),
 libaudit1 (= 1:3.0-2),
 libbinutils (= 2.35.2-2),
 libblkid1 (= 2.36.1-7),
 libboost-dev (= 1.74.0.3),
 libboost1.74-dev (= 1.74.0-9),
 libbrotli1 (= 1.0.9-2+b2),
 libbz2-1.0 (= 1.0.8-4),
 libc-bin (= 2.31-11),
 libc-dev-bin (= 2.31-11),
 libc6 (= 2.31-11),
 libc6-dev (= 2.31-11),
 libcap-ng0 (= 0.7.9-2.2+b1),
 libcc1-0 (= 10.2.1-6),
 libcom-err2 (= 1.46.2-1),
 libcrypt-dev (= 1:4.4.18-4),
 libcrypt1 (= 1:4.4.18-4),
 libctf-nobfd0 (= 2.35.2-2),
 libctf0 (= 2.35.2-2),
 libcurl3-gnutls (= 7.74.0-1.2),
 libcurl4 (= 7.74.0-1.2),
 libcurl4-gnutls-dev (= 7.74.0-1.2),
 libdb5.3 (= 5.3.28+dfsg1-0.8),
 libdebconfclient0 (= 0.257),
 libdebhelper-perl (= 13.3.4),
 libdeflate-dev (= 1.7-1),
 libdeflate0 (= 1.7-1),
 libdpkg-perl (= 1.20.9),
 libelf1 (= 0.183-3),
 libexpat1 (= 2.2.10-2),
 libffi7 (= 3.3-6),
 libfile-stripnondeterminism-perl (= 1.11.0-1),
 libgcc-10-dev (= 10.2.1-6),
 libgcc-s1 (= 10.2.1-6),
 libgcrypt20 (= 1.8.7-3),
 libgdbm-compat4 (= 1.19-2),
 libgdbm6 (= 1.19-2),
 libgfortran5 (= 10.2.1-6),
 libglib2.0-0 (= 2.66.8-1),
 libgmp10 (= 2:6.2.1+dfsg-1),
 libgnutls30 (= 3.7.1-4),
 libgomp1 (= 10.2.1-6),
 libgpg-error0 (= 1.38-2),
 libgssapi-krb5-2 (= 1.18.3-5),
 libgtest-dev (= 1.10.0.20201025-1.1),
 libhdf5-103-1 (= 1.10.6+repack-2),
 libhdf5-cpp-103-1 (= 1.10.6+repack-2),
 libhdf5-dev (= 1.10.6+repack-2),
 libhdf5-fortran-102 (= 1.10.6+repack-2),
 libhdf5-hl-100 (= 1.10.6+repack-2),
 libhdf5-hl-cpp-100 (= 1.10.6+repack-2),
 libhdf5-hl-fortran-100 (= 1.10.6+repack-2),
 libhogweed6 (= 3.7.2-3),
 libhts-dev (= 1.11-4),
 libhts3 (= 1.11-4),
 libicu67 (= 67.1-6),
 libidn2-0 (= 2.3.0-5),
 libisl23 (= 0.23-1),
 libitm1 (= 10.2.1-6),
 libjpeg-dev (= 1:2.0.6-4),
 libjpeg62-turbo (= 1:2.0.6-4),
 libjpeg62-turbo-dev (= 1:2.0.6-4),
 libjsoncpp24 (= 1.9.4-4),
 libk5crypto3 (= 1.18.3-5),
 libkeyutils1 (= 1.6.1-2),
 libkrb5-3 (= 1.18.3-5),
 libkrb5support0 (= 1.18.3-5),
 libldap-2.4-2 (= 2.4.57+dfsg-2),
 liblsan0 (= 10.2.1-6),
 liblz4-1 (= 1.9.3-1),
 liblzma-dev (= 5.2.5-2),
 liblzma5 (= 5.2.5-2),
 libmagic-mgc (= 1:5.39-3),
 libmagic1 (= 1:5.39-3),
 libmount1 (= 2.36.1-7),
 libmpc3 (= 1.2.0-1),
 libmpdec3 (= 2.5.1-2),
 libmpfr6 (= 4.1.0-3),
 libncurses6 (= 6.2+20201114-2),
 libncursesw6 (= 6.2+20201114-2),
 libnettle8 (= 3.7.2-3),
 libnghttp2-14 (= 1.43.0-1),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libp11-kit0 (= 0.23.22-1),
 libpam-modules (= 1.4.0-7),
 libpam-modules-bin (= 1.4.0-7),
 libpam-runtime (= 1.4.0-7),
 libpam0g (= 1.4.0-7),
 libpbbam-dev (= 1.6.0+dfsg-2),
 libpbbam1.6.0 (= 1.6.0+dfsg-2),
 libpbcopper-dev (= 1.8.0+dfsg-2+b1),
 libpbcopper1.8.0 (= 1.8.0+dfsg-2+b1),
 libpcre2-8-0 (= 10.36-2),
 libpcre3 (= 2:8.39-13),
 libperl5.32 (= 5.32.1-3),
 libpipeline1 (= 1.5.3-1),
 libprocps8 (= 2:3.3.17-5),
 libpsl5 (= 0.21.0-1.2),
 libpython3-stdlib (= 3.9.2-3),
 libpython3.9-minimal (= 3.9.2-1),
 libpython3.9-stdlib (= 3.9.2-1),
 libquadmath0 (= 10.2.1-6),
 libreadline8 (= 8.1-1),
 librhash0 (= 1.4.1-2),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.27+dfsg-2.1),
 libsasl2-modules-db (= 2.1.27+dfsg-2.1),
 libseccomp2 (= 2.5.1-1),
 libselinux1 (= 3.1-3),
 libsemanage-common (= 3.1-1),
 libsemanage1 (= 3.1-1+b2),
 libsepol1 (= 3.1-1),
 libsigsegv2 (= 2.13-1),
 libsmartcols1 (= 2.36.1-7),
 libsqlite3-0 (= 3.34.1-3),
 libssh2-1 (= 1.9.0-3),
 libssl-dev (= 1.1.1k-1),
 libssl1.1 (= 1.1.1k-1),
 libstdc++-10-dev (= 10.2.1-6),
 libstdc++6 (= 10.2.1-6),
 libsub-override-perl (= 0.09-2),
 libsystemd0 (= 247.3-5),
 libsz2 (= 1.0.4-2),
 libtasn1-6 (= 4.16.0-2),
 libtinfo6 (= 6.2+20201114-2),
 libtirpc-common (= 1.3.1-1),
 libtirpc-dev (= 1.3.1-1),
 libtirpc3 (= 1.3.1-1),
 libtool (= 2.4.6-15),
 libtsan0 (= 10.2.1-6),
 libubsan1 (= 10.2.1-6),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 247.3-5),
 libunistring2 (= 0.9.10-4),
 libuuid1 (= 2.36.1-7),
 libuv1 (= 1.40.0-1),
 libxml2 (= 2.9.10+dfsg-6.3+b1),
 libxxhash0 (= 0.8.0-2),
 libzstd1 (= 1.4.8+dfsg-2.1),
 linux-libc-dev (= 5.10.28-1),
 login (= 1:4.8.1-1),
 lsb-base (= 11.1.0),
 m4 (= 1.4.18-5),
 make (= 4.3-4.1),
 man-db (= 2.9.4-2),
 mawk (= 1.3.4.20200120-2),
 media-types (= 4.0.0),
 meson (= 0.57.0+really0.56.2-0.1),
 ncurses-base (= 6.2+20201114-2),
 ncurses-bin (= 6.2+20201114-2),
 ninja-build (= 1.10.1-1),
 passwd (= 1:4.8.1-1),
 patch (= 2.7.6-7),
 perl (= 5.32.1-3),
 perl-base (= 5.32.1-3),
 perl-modules-5.32 (= 5.32.1-3),
 pkg-config (= 0.29.2-1),
 po-debconf (= 1.0.21+nmu1),
 procps (= 2:3.3.17-5),
 python3 (= 3.9.2-3),
 python3-minimal (= 3.9.2-3),
 python3-pkg-resources (= 52.0.0-3),
 python3.9 (= 3.9.2-1),
 python3.9-minimal (= 3.9.2-1),
 readline-common (= 8.1-1),
 sed (= 4.7-1),
 sensible-utils (= 0.0.14),
 sysvinit-utils (= 2.96-7),
 tar (= 1.34+dfsg-1),
 tzdata (= 2021a-1),
 util-linux (= 2.36.1-7),
 xz-utils (= 5.2.5-2),
 zlib1g (= 1:1.2.11.dfsg-2),
 zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1605530860"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libblasr-dev_5.3.4+dfsg-3_ppc64el.deb
-------------------------------------

 new Debian package, version 2.0.
 size 2090192 bytes: control archive=9484 bytes.
     801 bytes,    19 lines      control              
   45426 bytes,   467 lines      md5sums              
 Package: libblasr-dev
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: ppc64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 15974
 Depends: libblasr5.3.4 (= 5.3.4+dfsg-3), libpbdata-dev (= 5.3.4+dfsg-3)
 Breaks: libblasr (<< 5.3.3)
 Replaces: libblasr (<< 5.3.3)
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the alignment
  sublibrary.

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-rw-r--r-- root/root       130 2020-11-16 12:47 ./usr/include/pbseq/LibBlasrConfig.h
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/algorithms/alignment/
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-rw-r--r-- root/root       253 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentFormats.hpp
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-rw-r--r-- root/root     18470 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
-rw-r--r-- root/root       446 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/BaseScoreFunction.hpp
-rw-r--r-- root/root      1664 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
-rw-r--r-- root/root      4641 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
-rw-r--r-- root/root     14955 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/ExtendAlign.hpp
-rw-r--r-- root/root      5694 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/FullQVAlign.hpp
-rw-r--r-- root/root       737 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/GraphPaper.hpp
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-rw-r--r-- root/root     21551 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp
-rw-r--r-- root/root      5922 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/IDSScoreFunction.hpp
-rw-r--r-- root/root     12931 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp
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-rw-r--r-- root/root      2595 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/QualityValueScoreFunction.hpp
-rw-r--r-- root/root      2536 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp
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-rw-r--r-- root/root      5936 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/FindMaxInterval.hpp
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-rw-r--r-- root/root       818 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp
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-rw-r--r-- root/root      1848 2020-02-24 11:17 ./usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArray.hpp
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/algorithms/sorting/
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/bwt/
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/datastructures/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/alignment/datastructures/alignment/
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/
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lrwxrwxrwx root/root         0 2020-11-16 12:47 ./usr/lib/powerpc64le-linux-gnu/libblasr.so -> libblasr.so.5.3.4
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-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libblasr-dev/copyright


libblasr5.3.4-dbgsym_5.3.4+dfsg-3_ppc64el.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 8326960 bytes: control archive=548 bytes.
     402 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: libblasr5.3.4-dbgsym
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Auto-Built-Package: debug-symbols
 Architecture: ppc64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 8574
 Depends: libblasr5.3.4 (= 5.3.4+dfsg-3)
 Section: debug
 Priority: optional
 Description: debug symbols for libblasr5.3.4
 Build-Ids: 62d13ac22573f2106de80e92ab5989450a10e68a

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/debug/.build-id/62/
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drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-11-16 12:47 ./usr/share/doc/libblasr5.3.4-dbgsym -> libblasr5.3.4


libblasr5.3.4_5.3.4+dfsg-3_ppc64el.deb
--------------------------------------

 new Debian package, version 2.0.
 size 1090752 bytes: control archive=956 bytes.
     781 bytes,    16 lines      control              
     236 bytes,     3 lines      md5sums              
      45 bytes,     1 lines      shlibs               
      67 bytes,     2 lines      triggers             
 Package: libblasr5.3.4
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: ppc64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3549
 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libhdf5-103-1, libhdf5-cpp-103-1 (>= 1.10.5), libpbbam1.6.0 (>= 1.6.0+dfsg), libpbcopper1.8.0 (>= 1.8.0+dfsg), libstdc++6 (>= 9)
 Section: libs
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the alignment sublibrary.

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/lib/powerpc64le-linux-gnu/
-rw-r--r-- root/root   3616056 2020-11-16 12:47 ./usr/lib/powerpc64le-linux-gnu/libblasr.so.5.3.4
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libblasr5.3.4/
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-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libblasr5.3.4/copyright


libpbdata-dev_5.3.4+dfsg-3_ppc64el.deb
--------------------------------------

 new Debian package, version 2.0.
 size 40976 bytes: control archive=3036 bytes.
     676 bytes,    17 lines      control              
    6805 bytes,    85 lines      md5sums              
 Package: libpbdata-dev
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: ppc64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 227
 Depends: libpbcopper-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the pbdata
  sublibrary.

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-rw-r--r-- root/root      1099 2020-02-24 11:17 ./usr/include/pbseq/pbdata/utils/SMRTTitle.hpp
-rw-r--r-- root/root       118 2020-02-24 11:17 ./usr/include/pbseq/pbdata/utils/TimeUtils.hpp
-rw-r--r-- root/root      1269 2020-02-24 11:17 ./usr/include/pbseq/pbdata/utilsImpl.hpp
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libpbdata-dev/
-rw-r--r-- root/root      1960 2020-11-16 12:47 ./usr/share/doc/libpbdata-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libpbdata-dev/copyright


libpbihdf-dev_5.3.4+dfsg-3_ppc64el.deb
--------------------------------------

 new Debian package, version 2.0.
 size 47460 bytes: control archive=2136 bytes.
     670 bytes,    17 lines      control              
    4158 bytes,    55 lines      md5sums              
 Package: libpbihdf-dev
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: ppc64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 329
 Depends: libhdf5-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio hdf5 files (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the hdf
  sublibrary.

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/include/pbseq/hdf/
-rw-r--r-- root/root      5767 2020-11-16 12:47 ./usr/include/pbseq/hdf/BufferedHDF2DArray.hpp
-rw-r--r-- root/root     12469 2020-11-16 12:47 ./usr/include/pbseq/hdf/BufferedHDF2DArrayImpl.hpp
-rw-r--r-- root/root      8257 2020-11-16 12:47 ./usr/include/pbseq/hdf/BufferedHDFArray.hpp
-rw-r--r-- root/root     13360 2020-11-16 12:47 ./usr/include/pbseq/hdf/BufferedHDFArrayImpl.hpp
-rw-r--r-- root/root       970 2020-02-24 11:17 ./usr/include/pbseq/hdf/DatasetCollection.hpp
-rw-r--r-- root/root       967 2020-02-24 11:17 ./usr/include/pbseq/hdf/DatasetCollectionImpl.hpp
-rw-r--r-- root/root       653 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDF2DArray.hpp
-rw-r--r-- root/root      1129 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFAlnGroup.hpp
-rw-r--r-- root/root       481 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFAlnGroupGroup.hpp
-rw-r--r-- root/root      1125 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFAlnInfoGroup.hpp
-rw-r--r-- root/root      2361 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFArray.hpp
-rw-r--r-- root/root      5816 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFAtom.hpp
-rw-r--r-- root/root       488 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFAttributable.hpp
-rw-r--r-- root/root     41832 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFBasReader.hpp
-rw-r--r-- root/root     13629 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFBasWriter.hpp
-rw-r--r-- root/root      6346 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFBaseCallsWriter.hpp
-rw-r--r-- root/root      3471 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFBaxWriter.hpp
-rw-r--r-- root/root     11599 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCCSReader.hpp
-rw-r--r-- root/root      1002 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpData.hpp
-rw-r--r-- root/root      2463 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpExperimentGroup.hpp
-rw-r--r-- root/root     37131 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpFile.hpp
-rw-r--r-- root/root     29734 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpReader.hpp
-rw-r--r-- root/root      4075 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpRefAlignmentGroup.hpp
-rw-r--r-- root/root      2186 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpRootGroup.hpp
-rw-r--r-- root/root       226 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCmpSupportedFields.hpp
-rw-r--r-- root/root       128 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFCommonFG.hpp
-rw-r--r-- root/root       174 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFConfig.hpp
-rw-r--r-- root/root      1465 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFData.hpp
-rw-r--r-- root/root       733 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFFile.hpp
-rw-r--r-- root/root      1851 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFFileLogGroup.hpp
-rw-r--r-- root/root       703 2020-11-16 12:47 ./usr/include/pbseq/hdf/HDFGroup.hpp
-rw-r--r-- root/root      2262 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFMovieInfoGroup.hpp
-rw-r--r-- root/root       856 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFNewBasReader.hpp
-rw-r--r-- root/root     23134 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFPlsReader.hpp
-rw-r--r-- root/root      6703 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFPlsWriter.hpp
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-rw-r--r-- root/root      1795 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFPulseDataFile.hpp
-rw-r--r-- root/root      3358 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFPulseWriter.hpp
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-rw-r--r-- root/root      1333 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFRegionTableReader.hpp
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-rw-r--r-- root/root      1923 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFRegionsWriter.hpp
-rw-r--r-- root/root      2167 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFSMRTSequenceReader.hpp
-rw-r--r-- root/root      3280 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFScanDataReader.hpp
-rw-r--r-- root/root      2330 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFScanDataWriter.hpp
-rw-r--r-- root/root       484 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFSentinalFile.hpp
-rw-r--r-- root/root      1599 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFUtils.hpp
-rw-r--r-- root/root       928 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFWriteBuffer.hpp
-rw-r--r-- root/root      5105 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFWriterBase.hpp
-rw-r--r-- root/root      2023 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFZMWMetricsWriter.hpp
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-rw-r--r-- root/root      3966 2020-02-24 11:17 ./usr/include/pbseq/hdf/HDFZMWWriter.hpp
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libpbihdf-dev/
-rw-r--r-- root/root      1960 2020-11-16 12:47 ./usr/share/doc/libpbihdf-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libpbihdf-dev/copyright


libpbseq-dev_5.3.4+dfsg-3_ppc64el.deb
-------------------------------------

 new Debian package, version 2.0.
 size 5224 bytes: control archive=764 bytes.
     755 bytes,    16 lines      control              
     152 bytes,     2 lines      md5sums              
 Package: libpbseq-dev
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: ppc64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 13
 Depends: libpbdata-dev (= 5.3.4+dfsg-3), libpbihdf-dev (= 5.3.4+dfsg-3), libblasr-dev (= 5.3.4+dfsg-3)
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component development files.

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libpbseq-dev/
-rw-r--r-- root/root      1960 2020-11-16 12:47 ./usr/share/doc/libpbseq-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libpbseq-dev/copyright


libpbseq_5.3.4+dfsg-3_ppc64el.deb
---------------------------------

 new Debian package, version 2.0.
 size 5204 bytes: control archive=744 bytes.
     666 bytes,    16 lines      control              
     144 bytes,     2 lines      md5sums              
 Package: libpbseq
 Source: pbseqlib
 Version: 5.3.4+dfsg-3
 Architecture: ppc64el
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 13
 Depends: libblasr5.3.4 (= 5.3.4+dfsg-3)
 Section: science
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component shared libraries.

drwxr-xr-x root/root         0 2020-11-16 12:47 ./
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-16 12:47 ./usr/share/doc/libpbseq/
-rw-r--r-- root/root      1960 2020-11-16 12:47 ./usr/share/doc/libpbseq/changelog.Debian.gz
-rw-r--r-- root/root      4767 2020-11-16 12:47 ./usr/share/doc/libpbseq/copyright


lintian
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Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012001-2 [351 kB]
Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB]
Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB]
Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB]
Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB]
Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-3 [88.5 kB]
Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB]
Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up lzip (1.22-3) ...
Setting up t1utils (1.41-4) ...
Setting up diffstat (1.64-1) ...
Setting up libvariable-magic-perl (0.62-1+b3) ...
Setting up libb-hooks-op-check-perl (0.22-1+b3) ...
Setting up liblist-moreutils-xs-perl (0.430-2) ...
Setting up libparams-util-perl (1.102-1+b1) ...
Setting up libtime-duration-perl (1.21-1) ...
Setting up libtext-xslate-perl (3.5.8-1+b1) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libcapture-tiny-perl (0.48-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl (0.26-1+b1) ...
Setting up libdata-validate-domain-perl (0.10-1.1) ...
Setting up libproc-processtable-perl (0.59-2+b1) ...
Setting up libpath-tiny-perl (0.118-1) ...
Setting up lzop (1.04-2) ...
Setting up gpgconf (2.2.27-2) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libipc-run3-perl (0.048-2) ...
Setting up libaliased-perl (0.34-1.1) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006006-1) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libclass-xsaccessor-perl (1.19-3+b7) ...
Setting up libexporter-tiny-perl (1.002002-1) ...
Setting up libfont-ttf-perl (1.06-1.1) ...
Setting up libtext-levenshteinxs-perl (0.03-4+b8) ...
Setting up libperlio-gzip-perl (0.19-1+b7) ...
Setting up libhtml-html5-entities-perl (0.004-1.1) ...
Setting up libsereal-decoder-perl (4.018+ds-1+b1) ...
Setting up libmarkdown2:amd64 (2.2.6-1) ...
Setting up liburi-perl (5.08-1) ...
Setting up gpg (2.2.27-2) ...
Setting up libemail-address-xs-perl (1.04-1+b3) ...
Setting up libfile-basedir-perl (0.08-1) ...
Setting up liblist-moreutils-perl (0.430-2) ...
Setting up libtype-tiny-perl (1.012001-2) ...
Setting up libtext-markdown-discount-perl:amd64 (0.12-1+b1) ...
Setting up libexception-class-perl (1.44-1) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up libdata-optlist-perl (0.110-1.1) ...
Setting up libsub-exporter-perl (0.987-1) ...
Setting up libiterator-perl (0.03+ds1-1.1) ...
Setting up libiterator-util-perl (0.02+ds1-1.1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libdata-dpath-perl (0.58-1) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libimport-into-perl (1.002005-1) ...
Setting up libmoo-perl (2.004004-1) ...
Setting up libmoox-aliases-perl (0.001006-1.1) ...
Setting up libb-hooks-endofscope-perl (0.24-1.1) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up lintian (2.104.0) ...
Setting up sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ...
Processing triggers for man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.31-11) ...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 419080
Build-Time: 467
Distribution: unstable
Foreign Architectures: ppc64el
Host Architecture: ppc64el
Install-Time: 48
Job: pbseqlib_5.3.4+dfsg-3
Lintian: pass
Machine Architecture: amd64
Package: pbseqlib
Package-Time: 527
Source-Version: 5.3.4+dfsg-3
Space: 419080
Status: successful
Version: 5.3.4+dfsg-3
--------------------------------------------------------------------------------
Finished at 2021-04-29T18:11:01Z
Build needed 00:08:47, 419080k disk space