sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on mjolnir.einval.org +==============================================================================+ | pbseqlib 5.3.5+dfsg-11 (amd64) Thu, 19 Feb 2026 20:06:16 +0000 | +==============================================================================+ Package: pbseqlib Version: 5.3.5+dfsg-11 Source Version: 5.3.5+dfsg-11 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.Ql2vZQvc2p... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Thu, 19 Feb 2026 20:06:32 +0000 | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [187 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [11.2 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [10.1 MB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [10.2 MB] Fetched 31.7 MB in 7s (4331 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt apt-utils binutils binutils-aarch64-linux-gnu binutils-common debconf libacl1 libapt-pkg7.0 libattr1 libbinutils libctf-nobfd0 libctf0 libgprofng0 libsframe3 linux-libc-dev zlib1g 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.1 MB of archives. After this operation, 204 kB of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-3 [85.9 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg7.0 arm64 3.1.16 [1060 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 apt arm64 3.1.16 [1424 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 apt-utils arm64 3.1.16 [339 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 debconf all 1.5.92 [123 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libacl1 arm64 2.3.2-3 [31.8 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libattr1 arm64 1:2.5.2-4 [22.7 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libgprofng0 arm64 2.46-2 [680 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libctf0 arm64 2.46-2 [86.1 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libctf-nobfd0 arm64 2.46-2 [155 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 binutils-aarch64-linux-gnu arm64 2.46-2 [867 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libbinutils arm64 2.46-2 [686 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 binutils arm64 2.46-2 [279 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 binutils-common arm64 2.46-2 [2635 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libsframe3 arm64 2.46-2 [84.9 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev all 6.18.12-1 [2574 kB] Preconfiguring packages ... 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Setting up binutils-aarch64-linux-gnu (2.46-2) ... Setting up libgprofng0:arm64 (2.46-2) ... Setting up binutils (2.46-2) ... Processing triggers for libc-bin (2.42-13) ... +------------------------------------------------------------------------------+ | Fetch source files Thu, 19 Feb 2026 20:06:55 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pbseqlib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pbseqlib.git Please use: git clone https://salsa.debian.org/med-team/pbseqlib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 988 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main pbseqlib 5.3.5+dfsg-11 (dsc) [2618 B] Get:2 http://mirror.einval.org/debian unstable/main pbseqlib 5.3.5+dfsg-11 (tar) [973 kB] Get:3 http://mirror.einval.org/debian unstable/main pbseqlib 5.3.5+dfsg-11 (diff) [12.2 kB] Fetched 988 kB in 0s (11.1 MB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 19 Feb 2026 20:07:04 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkgconf, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libboost-iostreams-dev, libpbbam-dev (>> 2.3.0), libpbcopper-dev (>> 2.2.0), libhts-dev (>= 1.20+ds-2~), libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-amd64:arm64, apt-utils:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkgconf, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libboost-iostreams-dev, libpbbam-dev (>> 2.3.0), libpbcopper-dev (>> 2.2.0), libhts-dev (>= 1.20+ds-2~), libc-dev, libstdc++-dev, build-essential:arm64, crossbuild-essential-amd64:arm64, apt-utils:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-twDZT7/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ Sources [918 B] Get:5 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ Packages [962 B] Fetched 2489 B in 0s (115 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data comerr-dev:amd64 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-15-base:amd64 gcc-15-cross-base gcc-15-x86-64-linux-gnu gcc-15-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base googletest groff-base hdf5-helpers:amd64 icu-devtools intltool-debian krb5-multidev:amd64 libaec-dev:amd64 libaec0:amd64 libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libboost-dev:amd64 libboost-iostreams-dev:amd64 libboost-iostreams1.83-dev:amd64 libboost-iostreams1.83.0:amd64 libboost-regex1.83-dev:amd64 libboost-regex1.83.0:amd64 libboost1.83-dev:amd64 libbrotli-dev:amd64 libbrotli1 libbrotli1:amd64 libbz2-1.0:amd64 libbz2-dev:amd64 libc-gconv-modules-extra:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2 libcom-err2:amd64 libcurl3t64-gnutls:amd64 libcurl4-gnutls-dev:amd64 libcurl4t64 libcurl4t64:amd64 libdb5.3t64:amd64 libdebhelper-perl libdeflate-dev:amd64 libdeflate0:amd64 libelf1t64 libevent-2.1-7t64:amd64 libexpat1 libffi8 libffi8:amd64 libfile-stripnondeterminism-perl libgcc-15-dev:amd64 libgcc-15-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgmp-dev:amd64 libgmp10:amd64 libgmpxx4ldbl:amd64 libgnutls-dane0t64:amd64 libgnutls-openssl27t64:amd64 libgnutls28-dev:amd64 libgnutls30t64 libgnutls30t64:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libgssapi-krb5-2:amd64 libgssrpc4t64:amd64 libgtest-dev:amd64 libhdf5-310:amd64 libhdf5-cpp-310:amd64 libhdf5-dev:amd64 libhdf5-fortran-310:amd64 libhdf5-hl-310:amd64 libhdf5-hl-cpp-310:amd64 libhdf5-hl-fortran-310:amd64 libhogweed6t64:amd64 libhts-dev:amd64 libhts3t64:amd64 libhtscodecs2:amd64 libhwasan0:amd64 libhwasan0-amd64-cross libicu-dev:amd64 libicu76 libicu76:amd64 libidn2-0 libidn2-0:amd64 libidn2-dev:amd64 libitm1:amd64 libitm1-amd64-cross libjpeg-dev:amd64 libjpeg62-turbo:amd64 libjpeg62-turbo-dev:amd64 libjsoncpp26 libk5crypto3 libk5crypto3:amd64 libkadm5clnt-mit12:amd64 libkadm5srv-mit12:amd64 libkdb5-10t64:amd64 libkeyutils1 libkeyutils1:amd64 libkrb5-3 libkrb5-3:amd64 libkrb5-dev:amd64 libkrb5support0 libkrb5support0:amd64 libldap-dev:amd64 libldap2 libldap2:amd64 liblsan0:amd64 liblsan0-amd64-cross liblzma-dev:amd64 liblzma5:amd64 libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:amd64 libnghttp2-14 libnghttp2-14:amd64 libnghttp2-dev:amd64 libnghttp3-9 libnghttp3-9:amd64 libnghttp3-dev:amd64 libngtcp2-16 libngtcp2-16:amd64 libngtcp2-crypto-gnutls-dev:amd64 libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-ossl0 libngtcp2-crypto-ossl0:amd64 libngtcp2-dev:amd64 libp11-kit-dev:amd64 libp11-kit0 libp11-kit0:amd64 libpbbam-dev:amd64 libpbbam2.4.0:amd64 libpbcopper-dev:amd64 libpbcopper2.3.0:amd64 libpipeline1 libpkgconf7 libproc2-0 libpsl-dev:amd64 libpsl5t64 libpsl5t64:amd64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8t64 librhash1 librtmp-dev:amd64 librtmp1 librtmp1:amd64 libsasl2-2 libsasl2-2:amd64 libsasl2-modules-db libsasl2-modules-db:amd64 libsqlite3-0 libssh2-1-dev:amd64 libssh2-1t64 libssh2-1t64:amd64 libssl-dev:amd64 libssl3t64:amd64 libstdc++-15-dev:amd64 libstdc++-15-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsz2:amd64 libtasn1-6 libtasn1-6:amd64 libtasn1-6-dev:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunbound8:amd64 libunistring5 libunistring5:amd64 libuv1t64 libxml2-16 libzstd-dev:amd64 libzstd1:amd64 linux-libc-dev-amd64-cross m4 man-db media-types meson netbase nettle-dev:amd64 ninja-build pkgconf:amd64 pkgconf-bin po-debconf procps python3 python3-autocommand python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-minimal python3-more-itertools python3-pkg-resources python3-setuptools python3-typeguard python3-typing-extensions python3-zipp python3.13 python3.13-minimal readline-common sensible-utils tzdata zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode doc-base:amd64 gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc:amd64 lrzip libboost-doc:amd64 libboost1.83-doc:amd64 libboost-atomic1.83-dev:amd64 libboost-chrono1.83-dev:amd64 libboost-container1.83-dev:amd64 libboost-context1.83-dev:amd64 libboost-contract1.83-dev:amd64 libboost-coroutine1.83-dev:amd64 libboost-date-time1.83-dev:amd64 libboost-exception1.83-dev:amd64 libboost-fiber1.83-dev:amd64 libboost-filesystem1.83-dev:amd64 libboost-graph-parallel1.83-dev:amd64 libboost-graph1.83-dev:amd64 libboost-json1.83-dev:amd64 libboost-locale1.83-dev:amd64 libboost-log1.83-dev:amd64 libboost-math1.83-dev:amd64 libboost-mpi-python1.83-dev:amd64 libboost-mpi1.83-dev:amd64 libboost-nowide1.83-dev:amd64 libboost-numpy1.83-dev:amd64 libboost-program-options1.83-dev:amd64 libboost-python1.83-dev:amd64 libboost-random1.83-dev:amd64 libboost-serialization1.83-dev:amd64 libboost-stacktrace1.83-dev:amd64 libboost-system1.83-dev:amd64 libboost-test1.83-dev:amd64 libboost-thread1.83-dev:amd64 libboost-timer1.83-dev:amd64 libboost-type-erasure1.83-dev:amd64 libboost-url1.83-dev:amd64 libboost-wave1.83-dev:amd64 libboost1.83-tools-dev:amd64 libmpfrc++-dev:amd64 libntl-dev:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libcurl4-doc:amd64 libidn-dev:amd64 gmp-doc:amd64 libgmp10-doc:amd64 libmpfr-dev:amd64 dns-root-data:amd64 gnutls-bin:amd64 gnutls-doc:amd64 gnutls-bin krb5-doc krb5-user krb5-user:amd64 libhdf5-doc:amd64 icu-doc:amd64 liblzma-doc:amd64 libnghttp2-doc:amd64 p11-kit-doc:amd64 libssl-doc:amd64 libstdc++-15-doc:amd64 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.13-venv python3.13-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx bzip2-doc:amd64 ca-certificates:amd64 ca-certificates libarchive-cpio-perl krb5-locales krb5-locales:amd64 libldap-common libldap-common:amd64 libgpm2 publicsuffix publicsuffix:amd64 libsasl2-modules libsasl2-modules:amd64 libtasn1-doc:amd64 libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data comerr-dev:amd64 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-15-base:amd64 gcc-15-cross-base gcc-15-x86-64-linux-gnu gcc-15-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base googletest groff-base hdf5-helpers:amd64 icu-devtools intltool-debian krb5-multidev:amd64 libaec-dev:amd64 libaec0:amd64 libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libboost-dev:amd64 libboost-iostreams-dev:amd64 libboost-iostreams1.83-dev:amd64 libboost-iostreams1.83.0:amd64 libboost-regex1.83-dev:amd64 libboost-regex1.83.0:amd64 libboost1.83-dev:amd64 libbrotli-dev:amd64 libbrotli1 libbrotli1:amd64 libbz2-1.0:amd64 libbz2-dev:amd64 libc-gconv-modules-extra:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2 libcom-err2:amd64 libcurl3t64-gnutls:amd64 libcurl4-gnutls-dev:amd64 libcurl4t64 libcurl4t64:amd64 libdb5.3t64:amd64 libdebhelper-perl libdeflate-dev:amd64 libdeflate0:amd64 libelf1t64 libevent-2.1-7t64:amd64 libexpat1 libffi8 libffi8:amd64 libfile-stripnondeterminism-perl libgcc-15-dev:amd64 libgcc-15-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgmp-dev:amd64 libgmp10:amd64 libgmpxx4ldbl:amd64 libgnutls-dane0t64:amd64 libgnutls-openssl27t64:amd64 libgnutls28-dev:amd64 libgnutls30t64 libgnutls30t64:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libgssapi-krb5-2:amd64 libgssrpc4t64:amd64 libgtest-dev:amd64 libhdf5-310:amd64 libhdf5-cpp-310:amd64 libhdf5-dev:amd64 libhdf5-fortran-310:amd64 libhdf5-hl-310:amd64 libhdf5-hl-cpp-310:amd64 libhdf5-hl-fortran-310:amd64 libhogweed6t64:amd64 libhts-dev:amd64 libhts3t64:amd64 libhtscodecs2:amd64 libhwasan0:amd64 libhwasan0-amd64-cross libicu-dev:amd64 libicu76 libicu76:amd64 libidn2-0 libidn2-0:amd64 libidn2-dev:amd64 libitm1:amd64 libitm1-amd64-cross libjpeg-dev:amd64 libjpeg62-turbo:amd64 libjpeg62-turbo-dev:amd64 libjsoncpp26 libk5crypto3 libk5crypto3:amd64 libkadm5clnt-mit12:amd64 libkadm5srv-mit12:amd64 libkdb5-10t64:amd64 libkeyutils1 libkeyutils1:amd64 libkrb5-3 libkrb5-3:amd64 libkrb5-dev:amd64 libkrb5support0 libkrb5support0:amd64 libldap-dev:amd64 libldap2 libldap2:amd64 liblsan0:amd64 liblsan0-amd64-cross liblzma-dev:amd64 liblzma5:amd64 libmagic-mgc libmagic1t64 libncursesw6 libnettle8t64:amd64 libnghttp2-14 libnghttp2-14:amd64 libnghttp2-dev:amd64 libnghttp3-9 libnghttp3-9:amd64 libnghttp3-dev:amd64 libngtcp2-16 libngtcp2-16:amd64 libngtcp2-crypto-gnutls-dev:amd64 libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-ossl0 libngtcp2-crypto-ossl0:amd64 libngtcp2-dev:amd64 libp11-kit-dev:amd64 libp11-kit0 libp11-kit0:amd64 libpbbam-dev:amd64 libpbbam2.4.0:amd64 libpbcopper-dev:amd64 libpbcopper2.3.0:amd64 libpipeline1 libpkgconf7 libproc2-0 libpsl-dev:amd64 libpsl5t64 libpsl5t64:amd64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libreadline8t64 librhash1 librtmp-dev:amd64 librtmp1 librtmp1:amd64 libsasl2-2 libsasl2-2:amd64 libsasl2-modules-db libsasl2-modules-db:amd64 libsqlite3-0 libssh2-1-dev:amd64 libssh2-1t64 libssh2-1t64:amd64 libssl-dev:amd64 libssl3t64:amd64 libstdc++-15-dev:amd64 libstdc++-15-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsz2:amd64 libtasn1-6 libtasn1-6:amd64 libtasn1-6-dev:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunbound8:amd64 libunistring5 libunistring5:amd64 libuv1t64 libxml2-16 libzstd-dev:amd64 libzstd1:amd64 linux-libc-dev-amd64-cross m4 man-db media-types meson netbase nettle-dev:amd64 ninja-build pkgconf:amd64 pkgconf-bin po-debconf procps python3 python3-autocommand python3-inflect python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-minimal python3-more-itertools python3-pkg-resources python3-setuptools python3-typeguard python3-typing-extensions python3-zipp python3.13 python3.13-minimal readline-common sbuild-build-depends-main-dummy:amd64 sensible-utils tzdata zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 241 newly installed, 0 to remove and 0 not upgraded. Need to get 204 MB of archives. After this operation, 951 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1000 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.7.4-1 [101 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.12-1 [860 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.12-1 [2070 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 python3-minimal arm64 3.13.9-3 [27.6 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 tzdata all 2025c-3 [263 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.5.2-3+b1 [23.3 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.6+20251231-1 [125 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.3-4 [74.8 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-4 [168 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-9 [854 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.12-1 [1908 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 python3.13 arm64 3.13.12-1 [776 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.9-3 [10.5 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 python3 arm64 3.13.9-3 [27.6 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9+b1 [62.4 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-9+b1 [871 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5+b1 [338 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5+b1 [103 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.46-5+b1 [44.0 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.23.2-1 [242 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2+b1 [69.1 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-10+b1 [1133 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.41.3-3 [97.7 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-2 [40.3 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.1-1+b1 [1455 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.21-1 [323 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.18.1-3 [878 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.23.2-1 [772 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 4.2.3-2 [2556 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-2+b1 [591 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libarchive13t64 arm64 3.8.5-1 [329 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.2.0-3 [295 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.22.1-2 [32.2 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b8 [24.9 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.22.1-2 [77.1 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6+b1 [9852 B] Get:45 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.22.1-2 [315 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.22.1-2 [127 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.3-2+b1 [459 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4+b1 [108 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1+b1 [179 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.68.0-1 [74.6 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b2 [59.6 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.10-1+b1 [421 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libtasn1-6 arm64 4.21.0-2 [48.0 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.12-2 [1407 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3+b1 [57.7 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1+b1 [235 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libcurl4t64 arm64 8.18.0-2 [373 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-5 [72.4 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1.1 [128 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2+b1 [149 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 4.2.3-2 [10.7 MB] Get:65 http://mirror.einval.org/debian unstable/main amd64 gcc-15-base amd64 15.2.0-13 [54.8 kB] Get:66 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 15.2.0-13 [71.5 kB] Get:67 http://mirror.einval.org/debian unstable/main amd64 libc-gconv-modules-extra amd64 2.42-13 [1123 kB] Get:68 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.42-13 [1814 kB] Get:69 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.42-13 [2016 kB] Get:70 http://mirror.einval.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b8 [25.1 kB] Get:71 http://mirror.einval.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b8 [56.7 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 gcc-15-x86-64-linux-gnu-base arm64 15.2.0-13cross1 [55.0 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 cpp-15-x86-64-linux-gnu arm64 15.2.0-13cross1 [11.3 MB] Get:74 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:15.2.0-5 [5324 B] Get:75 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.46-2 [1534 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 gcc-15-cross-base all 15.2.0-13cross1 [50.4 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 15.2.0-13cross1 [71.6 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 15.2.0-13cross1 [132 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 15.2.0-13cross1 [25.9 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 15.2.0-13cross1 [9244 B] Get:81 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 15.2.0-13cross1 [2770 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 15.2.0-13cross1 [1248 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 15.2.0-13cross1 [2480 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.42-12cross1 [1577 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 15.2.0-13cross1 [689 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 15.2.0-13cross1 [1107 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 15.2.0-13cross1 [1533 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 15.2.0-13cross1 [145 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libgcc-15-dev-amd64-cross all 15.2.0-13cross1 [2706 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 gcc-15-x86-64-linux-gnu arm64 15.2.0-13cross1 [21.8 MB] Get:91 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:15.2.0-5 [1448 B] Get:92 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.18.12-1 [12.2 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.42-12cross1 [2010 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libstdc++-15-dev-amd64-cross all 15.2.0-13cross1 [2426 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 g++-15-x86-64-linux-gnu arm64 15.2.0-13cross1 [12.2 MB] Get:96 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:15.2.0-5 [1204 B] Get:97 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.12 [3552 B] Get:98 http://mirror.einval.org/debian unstable/main arm64 d-shlibs all 0.109 [11.1 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.30 [92.7 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.5.4-9 [540 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 21+nmu1 [11.7 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:105 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.16-2+b1 [100 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.23.2-1 [1613 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.22 [216 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.30 [942 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 googletest all 1.17.0-1 [522 kB] Get:112 http://mirror.einval.org/debian unstable/main amd64 hdf5-helpers amd64 1.14.6+repack-2 [22.1 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libicu76 arm64 76.1-4+b1 [9519 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 icu-devtools arm64 76.1-4+b1 [200 kB] Get:115 http://mirror.einval.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:116 http://mirror.einval.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:117 http://mirror.einval.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b1 [9784 B] Get:118 http://mirror.einval.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-3+b1 [308 kB] Get:119 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-3 [89.0 kB] Get:120 http://mirror.einval.org/debian unstable/main amd64 libssl3t64 amd64 3.5.5-1 [2449 kB] Get:121 http://mirror.einval.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:122 http://mirror.einval.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:123 http://mirror.einval.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.22.1-2 [60.3 kB] Get:124 http://mirror.einval.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.22.1-2 [42.5 kB] Get:125 http://mirror.einval.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.22.1-2 [43.4 kB] Get:126 http://mirror.einval.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.22.1-2 [56.2 kB] Get:127 http://mirror.einval.org/debian unstable/main amd64 krb5-multidev amd64 1.22.1-2 [127 kB] Get:128 http://mirror.einval.org/debian unstable/main amd64 libaec0 amd64 1.1.5-1 [23.5 kB] Get:129 http://mirror.einval.org/debian unstable/main amd64 libsz2 amd64 1.1.5-1 [19.0 kB] Get:130 http://mirror.einval.org/debian unstable/main amd64 libaec-dev amd64 1.1.5-1 [25.3 kB] Get:131 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 15.2.0-13 [2779 kB] Get:132 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 15.2.0-13 [9492 B] Get:133 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 15.2.0-13 [141 kB] Get:134 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 15.2.0-13 [26.5 kB] Get:135 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 15.2.0-13 [1249 kB] Get:136 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 15.2.0-13 [2491 kB] Get:137 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 15.2.0-13 [737 kB] Get:138 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 15.2.0-13 [1108 kB] Get:139 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 15.2.0-13 [1538 kB] Get:140 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 15.2.0-13 [145 kB] Get:141 http://mirror.einval.org/debian unstable/main amd64 libgcc-15-dev amd64 15.2.0-13 [2719 kB] Get:142 http://mirror.einval.org/debian unstable/main amd64 libstdc++-15-dev amd64 15.2.0-13 [2446 kB] Get:143 http://mirror.einval.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-5+b1 [10.6 MB] Get:144 http://mirror.einval.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:145 http://mirror.einval.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-5+b1 [334 kB] Get:146 http://mirror.einval.org/debian unstable/main amd64 libicu76 amd64 76.1-4+b1 [9752 kB] Get:147 http://mirror.einval.org/debian unstable/main amd64 libicu-dev amd64 76.1-4+b1 [10.8 MB] Get:148 http://mirror.einval.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-5+b1 [351 kB] Get:149 http://mirror.einval.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6+b1 [40.4 kB] Get:150 http://mirror.einval.org/debian unstable/main amd64 liblzma5 amd64 5.8.2-2 [327 kB] Get:151 http://mirror.einval.org/debian unstable/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-5+b1 [254 kB] Get:152 http://mirror.einval.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-5+b1 [262 kB] Get:153 http://mirror.einval.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get:154 http://mirror.einval.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:155 http://mirror.einval.org/debian unstable/main amd64 libbrotli-dev amd64 1.2.0-3 [324 kB] Get:156 http://mirror.einval.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6+b1 [33.6 kB] Get:157 http://mirror.einval.org/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get:158 http://mirror.einval.org/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get:159 http://mirror.einval.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b1 [561 kB] Get:160 http://mirror.einval.org/debian unstable/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Get:161 http://mirror.einval.org/debian unstable/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Get:162 http://mirror.einval.org/debian unstable/main amd64 libunistring5 amd64 1.3-2+b1 [466 kB] Get:163 http://mirror.einval.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4+b1 [110 kB] Get:164 http://mirror.einval.org/debian unstable/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB] Get:165 http://mirror.einval.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.10-1+b1 [444 kB] Get:166 http://mirror.einval.org/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2 [50.4 kB] Get:167 http://mirror.einval.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.12-2 [1518 kB] Get:168 http://mirror.einval.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11 [710 kB] Get:169 http://mirror.einval.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get:170 http://mirror.einval.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get:171 http://mirror.einval.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [195 kB] Get:172 http://mirror.einval.org/debian unstable/main amd64 libnghttp2-14 amd64 1.68.0-1 [79.8 kB] Get:173 http://mirror.einval.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get:174 http://mirror.einval.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b2 [59.8 kB] Get:175 http://mirror.einval.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3+b1 [60.7 kB] Get:176 http://mirror.einval.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1+b1 [245 kB] Get:177 http://mirror.einval.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.18.0-2 [404 kB] Get:178 http://mirror.einval.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b2 [184 kB] Get:179 http://mirror.einval.org/debian unstable/main amd64 libunbound8 amd64 1.24.2-1 [615 kB] Get:180 http://mirror.einval.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.12-2 [475 kB] Get:181 http://mirror.einval.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.12-2 [475 kB] Get:182 http://mirror.einval.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-4+b1 [103 kB] Get:183 http://mirror.einval.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.10-1+b1 [221 kB] Get:184 http://mirror.einval.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.21.0-2 [99.7 kB] Get:185 http://mirror.einval.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b1 [330 kB] Get:186 http://mirror.einval.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b1 [642 kB] Get:187 http://mirror.einval.org/debian unstable/main amd64 nettle-dev amd64 3.10.2-1 [1322 kB] Get:188 http://mirror.einval.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.12-2 [1455 kB] Get:189 http://mirror.einval.org/debian unstable/main amd64 libkrb5-dev amd64 1.22.1-2 [16.1 kB] Get:190 http://mirror.einval.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1+b1 [313 kB] Get:191 http://mirror.einval.org/debian unstable/main arm64 libpkgconf7 arm64 2.5.1-4 [45.5 kB] Get:192 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 2.5.1-4 [35.1 kB] Get:193 http://mirror.einval.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:194 http://mirror.einval.org/debian unstable/main amd64 libnghttp2-dev amd64 1.68.0-1 [119 kB] Get:195 http://mirror.einval.org/debian unstable/main amd64 libnghttp3-dev amd64 1.12.0-1 [95.5 kB] Get:196 http://mirror.einval.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.16.0-1 [25.2 kB] Get:197 http://mirror.einval.org/debian unstable/main amd64 libngtcp2-dev amd64 1.16.0-1 [193 kB] Get:198 http://mirror.einval.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b2 [80.3 kB] Get:199 http://mirror.einval.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-3 [919 kB] Get:200 http://mirror.einval.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3+b1 [69.9 kB] Get:201 http://mirror.einval.org/debian unstable/main amd64 libssl-dev amd64 3.5.5-1 [2978 kB] Get:202 http://mirror.einval.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1+b1 [394 kB] Get:203 http://mirror.einval.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-3+b1 [375 kB] Get:204 http://mirror.einval.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.18.0-2 [527 kB] Get:205 http://mirror.einval.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get:206 http://mirror.einval.org/debian unstable/main amd64 libcurl4t64 amd64 8.18.0-2 [412 kB] Get:207 http://mirror.einval.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2+b1 [49.5 kB] Get:208 http://mirror.einval.org/debian unstable/main amd64 libdeflate-dev amd64 1.23-2+b1 [58.1 kB] Get:209 http://mirror.einval.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-13 [862 kB] Get:210 http://mirror.einval.org/debian unstable/main amd64 libgtest-dev amd64 1.17.0-1 [259 kB] Get:211 http://mirror.einval.org/debian unstable/main amd64 libhdf5-310 amd64 1.14.6+repack-2 [1360 kB] Get:212 http://mirror.einval.org/debian unstable/main amd64 libhdf5-cpp-310 amd64 1.14.6+repack-2 [132 kB] Get:213 http://mirror.einval.org/debian unstable/main amd64 libhdf5-fortran-310 amd64 1.14.6+repack-2 [107 kB] Get:214 http://mirror.einval.org/debian unstable/main amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [64.7 kB] Get:215 http://mirror.einval.org/debian unstable/main amd64 libhdf5-hl-fortran-310 amd64 1.14.6+repack-2 [39.5 kB] Get:216 http://mirror.einval.org/debian unstable/main amd64 libhdf5-hl-cpp-310 amd64 1.14.6+repack-2 [20.0 kB] Get:217 http://mirror.einval.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:218 http://mirror.einval.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get:219 http://mirror.einval.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get:220 http://mirror.einval.org/debian unstable/main amd64 libhdf5-dev amd64 1.14.6+repack-2 [3199 kB] Get:221 http://mirror.einval.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2+b1 [101 kB] Get:222 http://mirror.einval.org/debian unstable/main amd64 libhts3t64 amd64 1.22.1+ds2-1+b1 [477 kB] Get:223 http://mirror.einval.org/debian unstable/main amd64 liblzma-dev amd64 5.8.2-2 [366 kB] Get:224 http://mirror.einval.org/debian unstable/main amd64 libhts-dev amd64 1.22.1+ds2-1+b1 [1787 kB] Get:225 http://mirror.einval.org/debian unstable/main amd64 libpbcopper2.3.0 amd64 2.3.0+dfsg-4 [717 kB] Get:226 http://mirror.einval.org/debian unstable/main amd64 libpbbam2.4.0 amd64 2.4.0+dfsg-3 [823 kB] Get:227 http://mirror.einval.org/debian unstable/main amd64 libpbcopper-dev amd64 2.3.0+dfsg-4 [1053 kB] Get:228 http://mirror.einval.org/debian unstable/main amd64 libpbbam-dev amd64 2.4.0+dfsg-3 [88.4 kB] Get:229 http://mirror.einval.org/debian unstable/main arm64 ninja-build arm64 1.13.2-1+b1 [142 kB] Get:230 http://mirror.einval.org/debian unstable/main arm64 python3-autocommand all 2.2.2-4 [13.7 kB] Get:231 http://mirror.einval.org/debian unstable/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get:232 http://mirror.einval.org/debian unstable/main arm64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Get:233 http://mirror.einval.org/debian unstable/main arm64 python3-typeguard all 4.4.4-2 [37.2 kB] Get:234 http://mirror.einval.org/debian unstable/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get:235 http://mirror.einval.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-2 [8184 B] Get:236 http://mirror.einval.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:237 http://mirror.einval.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get:238 http://mirror.einval.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:239 http://mirror.einval.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get:240 http://mirror.einval.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get:241 http://mirror.einval.org/debian unstable/main arm64 meson all 1.10.1-1 [682 kB] Preconfiguring packages ... Fetched 204 MB in 2s (85.7 MB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 12106 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.4-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.12-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.12-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.12-1_arm64.deb ... Unpacking python3.13-minimal (3.13.12-1) ... Setting up libpython3.13-minimal:arm64 (3.13.12-1) ... Setting up libexpat1:arm64 (2.7.4-1) ... Setting up python3.13-minimal (3.13.12-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12440 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.13.9-3_arm64.deb ... Unpacking python3-minimal (3.13.9-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2025c-3_all.deb ... Unpacking tzdata (2025c-3) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../04-libffi8_3.5.2-3+b1_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-3+b1) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../05-libncursesw6_6.6+20251231-1_arm64.deb ... Unpacking libncursesw6:arm64 (6.6+20251231-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../07-libreadline8t64_8.3-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../08-libsqlite3-0_3.46.1-9_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.46.1-9) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../09-libpython3.13-stdlib_3.13.12-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.12-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../10-python3.13_3.13.12-1_arm64.deb ... Unpacking python3.13 (3.13.12-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../11-libpython3-stdlib_3.13.9-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.9-3) ... Setting up python3-minimal (3.13.9-3) ... Selecting previously unselected package python3. (Reading database ... 13474 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.9-3_arm64.deb ... Unpacking python3 (3.13.9-3) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9+b1_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9+b1) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9+b1_arm64.deb ... Unpacking procps (2:4.0.4-9+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.46-5+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.46-5+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.46-5+b1_arm64.deb ... Unpacking file (1:5.46-5+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.2-1_arm64.deb ... Unpacking gettext-base (0.23.2-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-2+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-10+b1_arm64.deb ... Unpacking groff-base (1.23.0-10+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.41.3-3_arm64.deb ... Unpacking bsdextrautils (2.41.3-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-2) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.1-1+b1_arm64.deb ... Unpacking man-db (2.13.1-1+b1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.21-1_arm64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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Processing triggers for libc-bin (2.42-13) ... +------------------------------------------------------------------------------+ | Check architectures Thu, 19 Feb 2026 20:08:43 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Thu, 19 Feb 2026 20:08:45 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.57+deb13-arm64 #1 SMP Debian 6.12.57-1 (2025-11-05) arm64 (aarch64) Toolchain package versions: binutils_2.46-2 dpkg-dev_1.23.5 g++-15_15.2.0-13 gcc-15_15.2.0-13 libc6-dev_2.42-13 libstdc++-15-dev_15.2.0-13 libstdc++-15-dev-amd64-cross_15.2.0-13cross1 libstdc++6_15.2.0-13 libstdc++6-amd64-cross_15.2.0-13cross1 linux-libc-dev_6.18.12-1 Package versions: apt_3.1.16 apt-utils_3.1.16 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 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libsystemd0_259.1-1 libsz2_1.1.5-1 libtasn1-6_4.21.0-2 libtasn1-6-dev_4.21.0-2 libtinfo6_6.6+20251231-1 libtool_2.5.4-9 libtsan2_15.2.0-13 libtsan2-amd64-cross_15.2.0-13cross1 libubsan1_15.2.0-13 libubsan1-amd64-cross_15.2.0-13cross1 libuchardet0_0.0.8-2+b1 libudev1_259.1-1 libunbound8_1.24.2-1 libunistring5_1.3-2+b1 libuuid1_2.41.3-3 libuv1t64_1.51.0-2+b1 libxml2-16_2.15.1+dfsg-2+b1 libxxhash0_0.8.3-2+b1 libzstd-dev_1.5.7+dfsg-3+b1 libzstd1_1.5.7+dfsg-3+b1 linux-libc-dev_6.18.12-1 linux-libc-dev-amd64-cross_6.18.12-1 login_1:4.16.0-2+really2.41.3-3 login.defs_1:4.19.2-1 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260129-1 media-types_14.0.0 meson_1.10.1-1 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 netbase_6.5 nettle-dev_3.10.2-1 ninja-build_1.13.2-1+b1 openssl-provider-legacy_3.5.5-1 patch_2.8-2+b1 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 procps_2:4.0.4-9+b1 python3_3.13.9-3 python3-autocommand_2.2.2-4 python3-inflect_7.5.0-1 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.9-3 python3-more-itertools_10.8.0-1 python3-pkg-resources_78.1.1-0.1 python3-setuptools_78.1.1-0.1 python3-typeguard_4.4.4-2 python3-typing-extensions_4.15.0-2 python3-zipp_3.23.0-1 python3.13_3.13.12-1 python3.13-minimal_3.13.12-1 readline-common_8.3-4 rpcsvc-proto_1.4.3-1+b2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b2 sensible-utils_0.0.26 sqv_1.3.0-5 sysvinit-utils_3.15-6+b1 tar_1.35+dfsg-3.1+b1 tzdata_2025c-3 util-linux_2.41.3-3 xz-utils_5.8.2-2 zlib1g_1:1.3.dfsg+really1.3.1-3 zlib1g-dev_1:1.3.dfsg+really1.3.1-3 +------------------------------------------------------------------------------+ | Build Thu, 19 Feb 2026 20:08:45 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbseqlib Binary: libblasr-dev, libblasr5.3.5, libpbseq, libpbseq-dev, libpbdata-dev, libpbihdf-dev Architecture: any Version: 5.3.5+dfsg-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/blasr_libcpp Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkgconf, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libboost-iostreams-dev, libpbbam-dev (>> 2.3.0), libpbcopper-dev (>> 2.2.0), libhts-dev (>= 1.20+ds-2~) Package-List: libblasr-dev deb libdevel optional arch=any libblasr5.3.5 deb libs optional arch=any libpbdata-dev deb libdevel optional arch=any libpbihdf-dev deb libdevel optional arch=any libpbseq deb science optional arch=any libpbseq-dev deb libdevel optional arch=any Checksums-Sha1: 52e008afcd7a07d4df0a18e2299c8b8e7c480e91 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz 13a48980f1313d42eb763b3a8c3a40bfccbf49eb 12220 pbseqlib_5.3.5+dfsg-11.debian.tar.xz Checksums-Sha256: 81afecd5d7ccb3cd70ed42cd8afa64876fde4c0deee89e1112c7f3b3d6ee8c49 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz e5092c9d5e9c39724ede8d8ee0161027c70b42f70f2e79930e8acf858ca0a361 12220 pbseqlib_5.3.5+dfsg-11.debian.tar.xz Files: 53cbc19d8c807640dafbd04fcc47f86e 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz fbb6851a0be41341fb90f0a10dfb4ed6 12220 pbseqlib_5.3.5+dfsg-11.debian.tar.xz Dgit: 2ba6b540adb19506bc7cab8739d57a943d86ed03 debian archive/debian/5.3.5+dfsg-11 https://git.dgit.debian.org/pbseqlib -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmji5r4UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpOlxAApqyFK1Pm5Vr9YdV4DnWEY2ND0JY5 bggddiDEaGAhAXAYxIsdCFD0jVtY6KcJ0LUoaTGdvuIqENVJuq5ZgsY3NsmZX84B fzhcNdEyxJP2GjowDLHyKPmw1Bds4WORG9+RwH+apfvuy9Ojmv602T7hEV2p90M4 iyN0wp4SYnTgN9rIfGJBWTPecrNZbD8hScCNysZIxjFpJfG9wU0+Govhi84TyAF2 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/usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting pbseqlib in /build/reproducible-path/pbseqlib-5.3.5+dfsg dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg.orig.tar.xz dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hdf5-1.10.1-support.patch dpkg-source: info: applying hdf5-1.10.0-support.patch dpkg-source: info: applying meson.patch dpkg-source: info: applying static+shared_lib.patch dpkg-source: info: applying gcc-13.patch dpkg-source: info: applying pbbam_2.3.0 dpkg-source: info: applying gcc-14.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package pbseqlib dpkg-buildpackage: info: source version 5.3.5+dfsg-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' dh_auto_clean find -name defines.mk -delete rm -f pbdata/libconfig.h make[1]: Leaving directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 --cross-file /build/reproducible-path/pbseqlib-5.3.5\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf DEPRECATION: "pkgconfig" entry is deprecated and should be replaced by "pkg-config" DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section. The Meson build system Version: 1.10.1 Source dir: /build/reproducible-path/pbseqlib-5.3.5+dfsg Build dir: /build/reproducible-path/pbseqlib-5.3.5+dfsg/obj-x86_64-linux-gnu Build type: cross build DEPRECATION: WrapDB v1 is deprecated, updated using `meson wrap update zlib` DEPRECATION: WrapDB v1 is deprecated, updated using `meson wrap update htslib` DEPRECATION: WrapDB v1 is deprecated, updated using `meson wrap update gtest` Project name: libblasr Project version: 5.3.5 C++ compiler for the host machine: /usr/bin/x86_64-linux-gnu-g++ (gcc 15.2.0 "x86_64-linux-gnu-g++ (Debian 15.2.0-13) 15.2.0") C++ linker for the host machine: /usr/bin/x86_64-linux-gnu-g++ ld.bfd 2.46 C++ compiler for the build machine: c++ (gcc 15.2.0 "c++ (Debian 15.2.0-13) 15.2.0") C++ linker for the build machine: c++ ld.bfd 2.46 Build machine cpu family: aarch64 Build machine cpu: aarch64 Host machine cpu family: x86_64 Host machine cpu: amd64 Target machine cpu family: x86_64 Target machine cpu: amd64 Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Found pkg-config: YES (/usr/bin/x86_64-linux-gnu-pkg-config) 2.5.1 Run-time dependency Boost found: YES 1.83.0 (/usr) ../meson.build:53: WARNING: Project targets '>= 0.52.0' but uses feature introduced in '0.54.0': fallback arg in dependency. Run-time dependency pbbam found: YES 2.4.0 ../meson.build:56: WARNING: Project targets '>= 0.52.0' but uses feature introduced in '0.54.0': fallback arg in dependency. Run-time dependency zlib found: YES 1.3.1 ../meson.build:59: WARNING: Project targets '>= 0.52.0' but uses feature introduced in '0.54.0': fallback arg in dependency. Run-time dependency htslib found: YES 1.22.1 Library rt found: YES Found pkg-config: YES (/usr/bin/x86_64-linux-gnu-pkg-config) 2.5.1 Run-time dependency HDF5 for cpp found: YES 1.14.6 Configuring LibBlasrConfig.h using configuration Program tools/check-formatting found: YES (/build/reproducible-path/pbseqlib-5.3.5+dfsg/tools/check-formatting) ../unittest/meson.build:15: WARNING: Project targets '>= 0.52.0' but uses feature introduced in '0.54.0': fallback arg in dependency. Run-time dependency GTest found: YES 1.17.0 Build targets in project: 3 WARNING: Project specifies a minimum meson_version '>= 0.52.0' but uses features which were added in newer versions: * 0.54.0: {'fallback arg in dependency'} NOTICE: Future-deprecated features used: * 0.56.0: {'meson.build_root', 'meson.source_root'} libblasr 5.3.5 User defined options Cross files : /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.13.2 at /usr/bin/ninja dh_auto_build -a cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v [1/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -c ../hdf/BufferedHDF2DArray.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/BufferedHDF2DArray.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [2/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -c ../hdf/BufferedHDFArray.cpp [3/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -MF libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o.d -o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -c ../hdf/DatasetCollection.cpp [4/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -c ../hdf/HDFAlnGroupGroup.cpp [5/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -c ../hdf/HDFAlnInfoGroup.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFAlnInfoGroup.hpp:8, from ../hdf/HDFAlnInfoGroup.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [6/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -c ../hdf/HDFAtom.cpp [7/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -c ../hdf/HDFAttributable.cpp [8/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -c ../hdf/HDFBaseCallsWriter.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFBaseCallsWriter.hpp:11, from ../hdf/HDFBaseCallsWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFBaseCallsWriter.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ In file included from ../hdf/HDFBaseCallsWriter.hpp:13: ../hdf/HDFZMWMetricsWriter.hpp:57:10: note: by ‘bool HDFZMWMetricsWriter::WriteOneZmw(const SMRTSequence&)’ 57 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ In file included from ../hdf/HDFBaseCallsWriter.hpp:14: ../hdf/HDFZMWWriter.hpp:53:10: note: by ‘bool HDFZMWWriter::WriteOneZmw(const PacBio::BAM::BamRecord&)’ 53 | bool WriteOneZmw(const PacBio::BAM::BamRecord& read); | ^~~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ ../hdf/HDFBaseCallsWriter.hpp:38:10: note: by ‘bool HDFBaseCallsWriter::WriteOneZmw(const SMRTSequence&)’ 38 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ [9/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -c ../hdf/HDFBaxWriter.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFBaseCallsWriter.hpp:11, from ../hdf/HDFBaxWriter.hpp:12, from ../hdf/HDFBaxWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFBaseCallsWriter.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ In file included from ../hdf/HDFBaseCallsWriter.hpp:13: ../hdf/HDFZMWMetricsWriter.hpp:57:10: note: by ‘bool HDFZMWMetricsWriter::WriteOneZmw(const SMRTSequence&)’ 57 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ In file included from ../hdf/HDFBaseCallsWriter.hpp:14: ../hdf/HDFZMWWriter.hpp:53:10: note: by ‘bool HDFZMWWriter::WriteOneZmw(const PacBio::BAM::BamRecord&)’ 53 | bool WriteOneZmw(const PacBio::BAM::BamRecord& read); | ^~~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ ../hdf/HDFBaseCallsWriter.hpp:38:10: note: by ‘bool HDFBaseCallsWriter::WriteOneZmw(const SMRTSequence&)’ 38 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ [10/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -c ../hdf/HDFCmpExperimentGroup.cpp [11/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -c ../hdf/HDFCmpSupportedFields.cpp [12/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFData.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -c ../hdf/HDFData.cpp [13/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -c ../hdf/HDFFile.cpp ../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’: ../hdf/HDFFile.cpp:34:75: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 34 | hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:47, from ../hdf/HDFFile.hpp:8, from ../hdf/HDFFile.cpp:1: /usr/include/hdf5/serial/H5File.h:115:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 115 | H5File(const H5File &original); | ^~~~~~ [14/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -c ../hdf/HDFGroup.cpp [15/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -c ../hdf/HDFNewBasReader.cpp [16/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -c ../hdf/HDFPulseCallsWriter.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFPulseCallsWriter.hpp:11, from ../hdf/HDFPulseCallsWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFPulseCallsWriter.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ In file included from ../hdf/HDFPulseCallsWriter.hpp:13: ../hdf/HDFZMWWriter.hpp:53:10: note: by ‘bool HDFZMWWriter::WriteOneZmw(const PacBio::BAM::BamRecord&)’ 53 | bool WriteOneZmw(const PacBio::BAM::BamRecord& read); | ^~~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ ../hdf/HDFPulseCallsWriter.hpp:37:10: note: by ‘bool HDFPulseCallsWriter::WriteOneZmw(const SMRTSequence&)’ 37 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ [17/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -c ../hdf/HDFPulseDataFile.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFScanDataReader.hpp:8, from ../hdf/HDFPulseDataFile.hpp:10, from ../hdf/HDFPulseDataFile.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFZMWReader.hpp:8, from ../hdf/HDFPulseDataFile.hpp:11: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [18/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -c ../hdf/HDFPulseH5Writer.cpp [19/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -c ../hdf/HDFPulseWriter.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFBaseCallsWriter.hpp:11, from ../hdf/HDFPulseWriter.hpp:12, from ../hdf/HDFPulseWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFBaseCallsWriter.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ In file included from ../hdf/HDFBaseCallsWriter.hpp:13: ../hdf/HDFZMWMetricsWriter.hpp:57:10: note: by ‘bool HDFZMWMetricsWriter::WriteOneZmw(const SMRTSequence&)’ 57 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ In file included from ../hdf/HDFBaseCallsWriter.hpp:14: ../hdf/HDFZMWWriter.hpp:53:10: note: by ‘bool HDFZMWWriter::WriteOneZmw(const PacBio::BAM::BamRecord&)’ 53 | bool WriteOneZmw(const PacBio::BAM::BamRecord& read); | ^~~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ ../hdf/HDFBaseCallsWriter.hpp:38:10: note: by ‘bool HDFBaseCallsWriter::WriteOneZmw(const SMRTSequence&)’ 38 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ In file included from ../hdf/HDFPulseWriter.hpp:13: ../hdf/HDFPulseCallsWriter.hpp:37:10: note: by ‘bool HDFPulseCallsWriter::WriteOneZmw(const SMRTSequence&)’ 37 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ [20/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -c ../hdf/HDFRegionsWriter.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionsWriter.hpp:9, from ../hdf/HDFRegionsWriter.cpp:3: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/HDFRegionsWriter.cpp: In member function ‘bool HDFRegionsWriter::Write(const std::vector&)’: ../hdf/HDFRegionsWriter.cpp:44:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 44 | for (auto annotation : annotations) | ^~~~~~~~~~~ In file included from ../pbdata/reads/RegionTable.hpp:17, from ../pbdata/SMRTSequence.hpp:14, from ../hdf/HDFWriterBase.hpp:17, from ../hdf/HDFRegionsWriter.hpp:13: ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ [21/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -c ../hdf/HDFRegionTableReader.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../hdf/HDFRegionTableReader.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [22/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -c ../hdf/HDFScanDataReader.cpp [23/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -c ../hdf/HDFScanDataWriter.cpp [24/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -c ../hdf/HDFUtils.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../hdf/HDFUtils.hpp:7, from ../hdf/HDFUtils.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [25/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -c ../hdf/HDFWriterBase.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFWriterBase.cpp:3: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [26/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -c ../hdf/HDFZMWMetricsWriter.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDFZMWMetricsWriter.hpp:6, from ../hdf/HDFZMWMetricsWriter.cpp:3: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ In file included from ../hdf/HDFZMWMetricsWriter.hpp:8: ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ ../hdf/HDFZMWMetricsWriter.hpp:57:10: note: by ‘bool HDFZMWMetricsWriter::WriteOneZmw(const SMRTSequence&)’ 57 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ [27/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -c ../hdf/HDFZMWReader.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFZMWReader.hpp:8, from ../hdf/HDFZMWReader.cpp:2: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [28/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -c ../hdf/HDFZMWWriter.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDFZMWWriter.hpp:10, from ../hdf/HDFZMWWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ In file included from ../hdf/HDFZMWWriter.hpp:12: ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ ../hdf/HDFZMWWriter.hpp:53:10: note: by ‘bool HDFZMWWriter::WriteOneZmw(const PacBio::BAM::BamRecord&)’ 53 | bool WriteOneZmw(const PacBio::BAM::BamRecord& read); | ^~~~~~~~~~~ [29/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -c ../alignment/algorithms/alignment/sdp/SDPFragment.cpp [30/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -c ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9, from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/x86_64-linux-gnu/include/c++/15/bits/alloc_traits.h:674:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 674 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:1421:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1421 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1422 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/15/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/15/string:45, from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:4: /usr/x86_64-linux-gnu/include/c++/15/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [31/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -c ../alignment/algorithms/alignment/AlignmentUtils.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/x86_64-linux-gnu/include/c++/15/bits/alloc_traits.h:674:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 674 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:1421:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1421 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1422 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/15/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/15/string:45, from ../alignment/algorithms/alignment/AlignmentUtils.hpp:4: /usr/x86_64-linux-gnu/include/c++/15/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [32/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -c ../alignment/algorithms/alignment/BaseScoreFunction.cpp [33/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -c ../alignment/algorithms/alignment/ExtendAlign.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/KBandAlign.hpp:10, from ../alignment/algorithms/alignment/ExtendAlign.hpp:9, from ../alignment/algorithms/alignment/ExtendAlign.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/x86_64-linux-gnu/include/c++/15/bits/alloc_traits.h:674:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 674 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:1421:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1421 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1422 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/15/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/15/vector:65, from ../alignment/algorithms/alignment/ExtendAlign.hpp:6: /usr/x86_64-linux-gnu/include/c++/15/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [34/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -c ../alignment/algorithms/alignment/GuidedAlign.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/GuidedAlign.hpp:11, from ../alignment/algorithms/alignment/GuidedAlign.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/x86_64-linux-gnu/include/c++/15/bits/alloc_traits.h:674:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 674 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:1421:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1421 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1422 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/15/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/15/string:45, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ostream:42, from ../alignment/algorithms/alignment/GuidedAlign.hpp:6: /usr/x86_64-linux-gnu/include/c++/15/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [35/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -c ../alignment/algorithms/alignment/IDSScoreFunction.cpp [36/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -c ../alignment/algorithms/alignment/KBandAlign.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/KBandAlign.hpp:10, from ../alignment/algorithms/alignment/KBandAlign.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/x86_64-linux-gnu/include/c++/15/bits/alloc_traits.h:674:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 674 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:1421:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1421 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1422 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/15/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/15/vector:65, from ../alignment/algorithms/alignment/KBandAlign.hpp:7: /usr/x86_64-linux-gnu/include/c++/15/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [37/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -c ../alignment/algorithms/alignment/QualityValueScoreFunction.cpp [38/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -c ../alignment/algorithms/alignment/ScoreMatrices.cpp [39/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -c ../alignment/algorithms/alignment/StringToScoreMatrix.cpp [40/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -c ../alignment/algorithms/anchoring/BWTSearch.cpp [41/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -c ../alignment/algorithms/anchoring/ClusterProbability.cpp [42/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o -c ../alignment/algorithms/anchoring/Coordinate.cpp [43/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -c ../alignment/algorithms/anchoring/FindMaxInterval.cpp In file included from ../alignment/algorithms/anchoring/FindMaxInterval.hpp:16, from ../alignment/algorithms/anchoring/FindMaxInterval.cpp:1: ../alignment/statistics/VarianceAccumulator.hpp:14:27: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 14 | VarianceAccumulator(); | ^ ../alignment/statistics/VarianceAccumulator.hpp:14:27: note: remove the ‘< >’ [44/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o -c ../alignment/algorithms/sorting/DifferenceCovers.cpp [45/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o -c ../alignment/algorithms/sorting/LightweightSuffixArray.cpp [46/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o -c ../alignment/algorithms/sorting/MultikeyQuicksort.cpp [47/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o -c ../alignment/algorithms/sorting/qsufsort.cpp [48/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ 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../alignment/datastructures/alignment/Alignment.cpp ../alignment/datastructures/alignment/Alignment.cpp: In member function ‘void blasr::Alignment::CopyStats(blasr::Alignment&)’: ../alignment/datastructures/alignment/Alignment.cpp:35:47: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 35 | AlignmentStats::CopyStats((AlignmentStats)rhs); | ^~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8, from ../alignment/datastructures/alignment/Alignment.cpp:2: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ [51/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o -c ../alignment/datastructures/alignment/AlignmentMap.cpp [52/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o -c ../alignment/datastructures/alignment/AlignmentStats.cpp [53/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o -c ../alignment/datastructures/alignment/CmpFile.cpp [54/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o -c ../alignment/datastructures/alignment/FilterCriteria.cpp [55/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o -c ../alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.cpp [56/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o -c ../alignment/datastructures/alignmentset/SAMQVConversion.cpp [57/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o -c ../alignment/datastructures/alignmentset/SAMSupplementalQVList.cpp [58/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o -c ../alignment/datastructures/anchoring/AnchorParameters.cpp [59/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o -c ../alignment/datastructures/anchoring/ClusterList.cpp [60/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o -c ../alignment/datastructures/anchoring/MatchPos.cpp [61/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -c ../alignment/datastructures/anchoring/WeightedInterval.cpp [62/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o -c ../alignment/files/BaseSequenceIO.cpp [63/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -c ../alignment/files/CCSIterator.cpp [64/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -c ../alignment/files/FragmentCCSIterator.cpp In file included from ../alignment/files/FragmentCCSIterator.hpp:6, from ../alignment/files/FragmentCCSIterator.cpp:1: ../alignment/files/CCSIterator.hpp:13:18: warning: ‘virtual void CCSIterator::Initialize(CCSSequence*)’ was hidden [-Woverloaded-virtual=] 13 | virtual void Initialize(CCSSequence *_seqPtr); | ^~~~~~~~~~ ../alignment/files/FragmentCCSIterator.hpp:17:18: note: by ‘virtual void FragmentCCSIterator::Initialize(CCSSequence*, RegionTable*)’ 17 | virtual void Initialize(CCSSequence *_seqPtr, RegionTable *_regionTablePtr); | ^~~~~~~~~~ [65/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -c ../alignment/files/ReaderAgglomerate.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../alignment/files/ReaderAgglomerate.hpp:8, from ../alignment/files/ReaderAgglomerate.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [66/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -c ../alignment/format/CompareSequencesPrinter.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/format/CompareSequencesPrinter.hpp:7, from ../alignment/format/CompareSequencesPrinter.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/x86_64-linux-gnu/include/c++/15/bits/alloc_traits.h:674:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 674 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:1421:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1421 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1422 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/15/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/15/string:45, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from ../alignment/format/CompareSequencesPrinter.hpp:4: /usr/x86_64-linux-gnu/include/c++/15/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [67/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -c ../alignment/format/IntervalPrinter.cpp [68/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -c ../alignment/format/SAMHeaderPrinter.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../alignment/files/ReaderAgglomerate.hpp:8, from ../alignment/format/SAMHeaderPrinter.hpp:14, from ../alignment/format/SAMHeaderPrinter.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [69/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o -c ../alignment/format/SAMPrinter.cpp [70/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o -c ../alignment/format/SummaryPrinter.cpp [71/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -MF libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -c ../alignment/query/PbiFilterZmwGroupQuery.cpp [72/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o -MF libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o -c ../alignment/query/SequentialZmwGroupQuery.cpp [73/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o -MF libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o.d -o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o -c ../alignment/qvs/QualityValueProfile.cpp [74/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o -c ../alignment/simulator/ContextSample.cpp [75/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o -c ../alignment/simulator/ContextSet.cpp [76/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o -c ../alignment/simulator/LengthHistogram.cpp In file included from /usr/x86_64-linux-gnu/include/c++/15/cassert:46, from ../alignment/statistics/StatUtils.hpp:5, from ../alignment/simulator/CDFMap.hpp:8, from ../alignment/simulator/LengthHistogram.hpp:8, from ../alignment/simulator/LengthHistogram.cpp:1: ../alignment/simulator/CDFMap.hpp: In instantiation of ‘int CDFMap::SelectRandomValue(T_Data&) [with T_Data = int]’: ../alignment/simulator/LengthHistogram.cpp:27:87: required from here 27 | void LengthHistogram::GetRandomLength(int &length) { lengthHistogram.SelectRandomValue(length); } | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../alignment/simulator/CDFMap.hpp:37:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 37 | assert(cdf.size() >= 0); | ~~~~~~~~~~~^~~~ [77/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 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-ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -c ../pbdata/loadpulses/MovieAlnIndexLookupTable.cpp [96/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o -c ../pbdata/metagenome/TitleTable.cpp [97/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o -MF libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o -c ../pbdata/qvs/BlasrQualityValue.cpp [98/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o -MF libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o -c ../pbdata/qvs/QualityTransform.cpp [99/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o -c ../pbdata/reads/AcqParams.cpp [100/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o -c ../pbdata/reads/BaseFile.cpp [101/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o -c ../pbdata/reads/HoleXY.cpp [102/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o -c ../pbdata/reads/PulseBaseCommon.cpp [103/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -c ../pbdata/reads/PulseFile.cpp [104/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -c ../pbdata/reads/ReadType.cpp [105/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -c ../pbdata/reads/RegionAnnotation.cpp [106/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -c ../pbdata/reads/RegionAnnotations.cpp ../pbdata/reads/RegionAnnotations.cpp: In constructor ‘RegionAnnotations::RegionAnnotations(UInt, const std::vector&, const std::vector&)’: ../pbdata/reads/RegionAnnotations.cpp:14:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 14 | for (auto annotation : annotations) { | ^~~~~~~~~~~ In file included from ../pbdata/reads/ReadInterval.hpp:4, from ../pbdata/reads/RegionAnnotations.hpp:10, from ../pbdata/reads/RegionAnnotations.cpp:4: ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector RegionAnnotations::RegionAnnotationsOfType(RegionType) const’: ../pbdata/reads/RegionAnnotations.cpp:37:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 37 | for (auto ra : table_) | ^~~~~~ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp: In member function ‘RegionAnnotation RegionAnnotations::TheHQRegion() const’: ../pbdata/reads/RegionAnnotations.cpp:65:22: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 65 | return hqs_[0]; | ^ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector RegionAnnotations::AdapterIntervals() const’: ../pbdata/reads/RegionAnnotations.cpp:85:34: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 85 | for (auto adapter : Adapters()) { | ^ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector RegionAnnotations::SubreadIntervals(DNALength, bool, bool) const’: ../pbdata/reads/RegionAnnotations.cpp:103:42: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 103 | for (auto adapter : Adapters()) { | ^ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp:122:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 122 | for (auto insert : inserts) { | ^~~~~~~ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ [107/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o -c ../pbdata/reads/RegionTable.cpp [108/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o -c ../pbdata/reads/RegionTypeMap.cpp [109/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o -c ../pbdata/reads/ScanData.cpp [110/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -c ../pbdata/reads/ZMWGroupEntry.cpp [111/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o -c ../pbdata/saf/AlnGroup.cpp [112/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o -c ../pbdata/saf/MovieInfo.cpp [113/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o -c ../pbdata/saf/RefGroup.cpp [114/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o -c ../pbdata/saf/RefInfo.cpp [115/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o -c ../pbdata/sam/ReadGroup.cpp [116/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o -c ../pbdata/sam/ReferenceSequence.cpp [117/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o -c ../pbdata/sam/SAMAlignment.cpp [118/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o -c ../pbdata/sam/SAMHeader.cpp [119/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o -c ../pbdata/sam/SAMKeywordValuePair.cpp [120/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o -c ../pbdata/utils/BitUtils.cpp [121/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -c ../pbdata/utils/SMRTReadUtils.cpp [122/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o -c ../pbdata/utils/SMRTTitle.cpp [123/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -c ../pbdata/utils/TimeUtils.cpp [124/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -c ../pbdata/BlasrFASTAReader.cpp In file included from ../pbdata/FASTAReader.hpp:7, from ../pbdata/BlasrFASTAReader.cpp:2: ../pbdata/FASTASequence.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = FASTASequence; _Args = {FASTASequence}; _Tp = FASTASequence]’: /usr/x86_64-linux-gnu/include/c++/15/bits/alloc_traits.h:674:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = FASTASequence; _Args = {FASTASequence}; _Tp = FASTASequence; allocator_type = std::allocator]’ 674 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_uninitialized.h:1288:26: required from ‘void std::__relocate_object_a(_Tp*, _Up*, _Allocator&) [with _Tp = FASTASequence; _Up = FASTASequence; _Allocator = allocator]’ 1288 | __traits::construct(__alloc, __dest, std::move(*__orig)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_uninitialized.h:1317:26: required from ‘_ForwardIterator std::__relocate_a_1(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = allocator]’ 1317 | std::__relocate_object_a(std::__addressof(*__cur), | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 1318 | std::__addressof(*__first), __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_uninitialized.h:1359:33: required from ‘_ForwardIterator std::__relocate_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = allocator]’ 1359 | return std::__relocate_a_1(std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 | std::__niter_base(__last), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1361 | std::__niter_base(__result), __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:539:26: required from ‘static std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_S_relocate(pointer, pointer, pointer, _Tp_alloc_type&) [with _Tp = FASTASequence; _Alloc = std::allocator; pointer = FASTASequence*; _Tp_alloc_type = std::vector::_Tp_alloc_type]’ 539 | return std::__relocate_a(__first, __last, __result, __alloc); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/vector.tcc:855:18: required from ‘void std::vector<_Tp, _Alloc>::_M_default_append(size_type) [with _Tp = FASTASequence; _Alloc = std::allocator; size_type = long unsigned int]’ 855 | _S_relocate(__old_start, __old_finish, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 | __new_start, _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:1146:4: required from ‘void std::vector<_Tp, _Alloc>::resize(size_type) [with _Tp = FASTASequence; _Alloc = std::allocator; size_type = long unsigned int]’ 1146 | _M_default_append(__new_size - size()); | ^~~~~~~~~~~~~~~~~ ../pbdata/BlasrFASTAReader.cpp:441:21: required from here 441 | sequences.resize(nSeq); | ~~~~~~~~~~~~~~~~^~~~~~ ../pbdata/FASTASequence.hpp:19:7: warning: implicitly-declared ‘constexpr DNASequence::DNASequence(const DNASequence&)’ is deprecated [-Wdeprecated-copy] 19 | class FASTASequence : public DNASequence | ^~~~~~~~~~~~~ In file included from ../pbdata/FASTASequence.hpp:13: ../pbdata/DNASequence.hpp:51:18: note: because ‘DNASequence’ has user-provided ‘DNASequence& DNASequence::operator=(const DNASequence&)’ 51 | DNASequence &operator=(const DNASequence &rhs); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/15/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/15/string:45, from ../pbdata/FASTAReader.hpp:5: /usr/x86_64-linux-gnu/include/c++/15/bits/new_allocator.h:191:11: note: synthesized method ‘constexpr FASTASequence::FASTASequence(const FASTASequence&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [125/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o -c ../pbdata/BlasrFASTQReader.cpp [126/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o -c ../pbdata/CCSSequence.cpp [127/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o -MF libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o -c ../pbdata/ChangeListID.cpp [128/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -MF libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -c ../pbdata/CommandLineParser.cpp [129/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -c ../pbdata/DNASequence.cpp [130/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -c ../pbdata/FASTASequence.cpp [131/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -c ../pbdata/FASTQSequence.cpp [132/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -c ../pbdata/GFFFile.cpp [133/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -c ../pbdata/MD5Utils.cpp [134/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -MF libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -c ../pbdata/NucConversion.cpp [135/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -c ../pbdata/PackedDNASequence.cpp [136/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -MF libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -c ../pbdata/ReverseCompressIndex.cpp [137/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -c ../pbdata/SMRTSequence.cpp ../pbdata/SMRTSequence.cpp: In member function ‘void SMRTSequence::MadeFromSubreadsAsPolymerase(const std::vector&)’: ../pbdata/SMRTSequence.cpp:356:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 356 | for (auto subread : subreads) { | ^~~~~~~~ ../pbdata/SMRTSequence.cpp:210:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 210 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs) | ^~~~~~~~~~~~ ../pbdata/SMRTSequence.cpp:381:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 381 | for (auto subread : subreads) { | ^~~~~~~~ ../pbdata/SMRTSequence.cpp:210:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 210 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs) | ^~~~~~~~~~~~ [138/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -c ../pbdata/StringUtils.cpp [139/187] /usr/bin/x86_64-linux-gnu-g++ -o libblasr.so.5.3.5 libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,-soname,libblasr.so.5.3.5 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--start-group /usr/lib/x86_64-linux-gnu/libpbbam.so /usr/lib/x86_64-linux-gnu/libpbcopper.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhts.so -lrt /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -Wl,--end-group [140/187] /usr/bin/meson --internal symbolextractor /build/reproducible-path/pbseqlib-5.3.5+dfsg/obj-x86_64-linux-gnu libblasr.so.5.3.5 libblasr.so.5.3.5 libblasr.so.5.3.5.p/libblasr.so.5.3.5.symbols --cross-host=linux [141/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp In file included from ../alignment/files/FragmentCCSIterator.hpp:6, from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:26: ../alignment/files/CCSIterator.hpp:13:18: warning: ‘virtual void CCSIterator::Initialize(CCSSequence*)’ was hidden [-Woverloaded-virtual=] 13 | virtual void Initialize(CCSSequence *_seqPtr); | ^~~~~~~~~~ ../alignment/files/FragmentCCSIterator.hpp:17:18: note: by ‘virtual void FragmentCCSIterator::Initialize(CCSSequence*, RegionTable*)’ 17 | virtual void Initialize(CCSSequence *_seqPtr, RegionTable *_regionTablePtr); | ^~~~~~~~~~ In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [142/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -c ../unittest/alignment/files/CCSIterator_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../unittest/alignment/files/CCSIterator_gtest.cpp:23: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [143/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -c ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../alignment/files/ReaderAgglomerate.hpp:8, from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [144/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp In file included from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:27: ../alignment/files/CCSIterator.hpp:13:18: warning: ‘virtual void CCSIterator::Initialize(CCSSequence*)’ was hidden [-Woverloaded-virtual=] 13 | virtual void Initialize(CCSSequence *_seqPtr); | ^~~~~~~~~~ In file included from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:28: ../alignment/files/FragmentCCSIterator.hpp:17:18: note: by ‘virtual void FragmentCCSIterator::Initialize(CCSSequence*, RegionTable*)’ 17 | virtual void Initialize(CCSSequence *_seqPtr, RegionTable *_regionTablePtr); | ^~~~~~~~~~ In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [145/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMPrinter_gtest.cpp [146/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMHeaderPrinter_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../alignment/files/ReaderAgglomerate.hpp:8, from ../alignment/format/SAMHeaderPrinter.hpp:14, from ../unittest/alignment/format/SAMHeaderPrinter_gtest.cpp:28: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [147/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/CmpIndexedStringTable_gtest.cpp [148/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/AlignmentMap_gtest.cpp [149/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/SequentialZmwGroupQuery_gtest.cpp [150/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/PbiFilterZmwGroupQuery_gtest.cpp [151/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -c ../unittest/alignment/utils/FileUtils_gtest.cpp [152/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -c ../unittest/alignment/utils/RangeUtils_gtest.cpp [153/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -c ../unittest/alignment/utils/RegionUtils_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [154/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -c ../unittest/hdf/HDFScanDataWriter_gtest.cpp [155/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -c ../unittest/hdf/HDFCCSReader_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../hdf/HDFCCSReader.hpp:4, from ../unittest/hdf/HDFCCSReader_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [156/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -c ../unittest/hdf/HDFZMWReader_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFZMWReader.hpp:8, from ../unittest/hdf/HDFZMWReader_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [157/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -c ../unittest/hdf/HDFPlsReader_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFPlsReader.hpp:8, from ../unittest/hdf/HDFPlsReader_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFPlsReader.hpp:9: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [158/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -c ../unittest/hdf/HDF2DArray_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../unittest/hdf/HDF2DArray_gtest.cpp:24: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [159/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -c ../unittest/hdf/HDFUtils_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../hdf/HDFUtils.hpp:7, from ../unittest/hdf/HDFUtils_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [160/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -c ../unittest/hdf/HDFBasReader_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../unittest/hdf/HDFBasReader_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [161/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -c ../unittest/hdf/HDFScanDataReader_gtest.cpp [162/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -c ../unittest/pbdata/metagenome/TitleTable_gtest.cpp [163/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -c ../unittest/pbdata/saf/RefInfo_gtest.cpp [164/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -c ../unittest/pbdata/saf/MovieInfo_gtest.cpp [165/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -c ../unittest/pbdata/saf/AlnGroup_gtest.cpp [166/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -c ../unittest/pbdata/utils/SMRTTitle_gtest.cpp [167/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -c ../unittest/pbdata/qvs/QualityValueVector_gtest.cpp [168/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -c ../unittest/pbdata/reads/RegionTypeMap_gtest.cpp [169/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -c ../unittest/pbdata/reads/ReadType_gtest.cpp [170/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -c ../unittest/pbdata/reads/RegionAnnotations_gtest.cpp [171/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -c ../unittest/pbdata/ScanData_gtest.cpp [172/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -c ../unittest/pbdata/StringUtils_gtest.cpp [173/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -c ../unittest/pbdata/SMRTSequence_gtest.cpp ../unittest/pbdata/SMRTSequence_gtest.cpp: In function ‘SMRTSequence _make_a_smrt_read_(const std::string&, const UInt&, DNALength, DNALength, const std::string&, bool, bool, bool, int, int, char, int, char)’: ../unittest/pbdata/SMRTSequence_gtest.cpp:66:12: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 66 | return smrt; | ^~~~ In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24: ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ ../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymerase_Test::TestBody()’: ../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 133 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/vector:68, from /usr/include/gtest/gtest.h:61, from ../unittest/pbdata/SMRTSequence_gtest.cpp:22: /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:708:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 708 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 133 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:708:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 708 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletion_Test::TestBody()’: ../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 192 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:708:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 708 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 192 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:708:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 708 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletionNoSubstitution_Test::TestBody()’: ../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 246 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:708:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 708 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 246 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/x86_64-linux-gnu/include/c++/15/bits/stl_vector.h:708:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 708 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ [174/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB 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unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o -c ../unittest/pbdata/VectorUtils_gtest.cpp [176/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o -c ../unittest/pbdata/defs_gtest.cpp [177/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o -c ../unittest/pbdata/FASTASequence_gtest.cpp [178/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o -c ../unittest/pbdata/ChangeListID_gtest.cpp [179/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -c ../unittest/pbdata/FASTQReader_gtest.cpp [180/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -c ../unittest/pbdata/SeqUtils_gtest.cpp [181/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -c ../unittest/pbdata/CCSSequence_gtest.cpp [182/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -c ../unittest/pbdata/utils_gtest.cpp [183/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -c ../unittest/pbdata/FASTQSequence_gtest.cpp [184/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -c ../unittest/pbdata/DNASequence_gtest.cpp [185/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -c ../unittest/pbdata/FASTAReader_gtest.cpp [186/187] rm -f libblasr.a && /usr/bin/x86_64-linux-gnu-ar csrD libblasr.a libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o [187/187] /usr/bin/x86_64-linux-gnu-g++ -o unittest/libblasr_unittest unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now '-Wl,-rpath,$ORIGIN/..:/usr/lib/x86_64-linux-gnu/hdf5/serial' -Wl,--start-group libblasr.so.5.3.5 /usr/lib/x86_64-linux-gnu/libpbbam.so /usr/lib/x86_64-linux-gnu/libpbcopper.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhts.so -lrt /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -Wl,--end-group create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && DESTDIR=/build/reproducible-path/pbseqlib-5.3.5\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [0/1] Installing files Installing libblasr.so.5.3.5 to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu Installing libblasr.a to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/obj-x86_64-linux-gnu/LibBlasrConfig.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/BufferedHDF2DArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/BufferedHDF2DArrayImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/BufferedHDFArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/BufferedHDFArrayImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/DatasetCollection.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/DatasetCollectionImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDF2DArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAlnGroupGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAlnGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAlnInfoGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAtom.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAttributable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFBaseCallsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFBasReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFBasWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFBaxWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCCSReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpData.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpExperimentGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpRefAlignmentGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpRootGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpSupportedFields.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCommonFG.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFConfig.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFData.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFFileLogGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFMovieInfoGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFNewBasReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPlsReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPlsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPulseCallsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPulseDataFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPulseWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRefGroupGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRefInfoGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRegionsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRegionTableReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRegionTableWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFScanDataReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFScanDataWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFSentinalFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFSMRTSequenceReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFWriteBuffer.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFWriterBase.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFZMWMetricsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFZMWReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFZMWWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/FragmentSort.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SDPColumn.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SDPFragment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SDPSet.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AffineGuidedAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AffineKBandAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AlignmentFormats.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AlignmentUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/BaseScoreFunction.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/ExtendAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/FullQVAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/GraphPaper.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/GraphPaperImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/GuidedAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/IDSScoreFunction.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/KBandAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/OneGapAlignment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/QualityValueScoreFunction.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/ScoreMatrices.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/SDPAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/SDPAlignImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/StringToScoreMatrix.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/SWAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/SWAlignImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/BasicEndpoint.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/BasicEndpointImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/BWTSearch.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/BWTSearchImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/ClusterProbability.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/Coordinate.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/FindMaxInterval.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/GlobalChain.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/GlobalChainImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISPValue.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISPValueImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISPValueWeightor.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISQValueWeightor.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISSizeWeightor.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/MapBySuffixArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/PrioritySearchTree.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/ScoreAnchors.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/compare/CompareStrings.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/compare Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/DifferenceCovers.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/Karkkainen.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/LightweightSuffixArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/MultikeyQuicksort.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/qsufsort.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/bwt/BWT.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/bwt Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/bwt/Occ.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/bwt Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/bwt/PackedHash.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/bwt Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/bwt/Pos.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/bwt Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignedPair.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentCandidate.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentContext.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentGapList.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/Alignment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentMap.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentStats.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/ByteAlignment.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/CmpFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/CmpIndexedStringTable.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/CmpReadGroupTable.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/CmpRefSeqTable.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/FilterCriteria.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/Path.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignmentset/SAMQVConversion.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/anchoring/AnchorParameters.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/anchoring/ClusterList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/anchoring/MatchPos.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/anchoring/WeightedInterval.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/BaseSequenceIO.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/CCSIterator.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/FragmentCCSIterator.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/ReaderAgglomerate.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/ReaderAgglomerateImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/BAMPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/BAMPrinterImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/CompareSequencesPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/CompareSequencesPrinterImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/IntervalPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/SAMHeaderPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/SAMPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/SAMPrinterImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/StickAlignmentPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/SummaryPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/VulgarPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/XMLPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/ipc/SharedMemoryAllocator.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/ipc Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/query/PbiFilterZmwGroupQuery.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/query Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/query/SequentialZmwGroupQuery.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/query Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/qvs/QualityValueProfile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/CDFMap.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/ContextOutputList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/ContextSample.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/ContextSet.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/LengthHistogram.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/OutputList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/OutputSample.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/OutputSampleList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/OutputSampleListSet.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/QualitySample.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/AnchorDistributionTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/cdfs.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/LookupAnchorDistribution.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/pdfs.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/StatUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/StatUtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/VarianceAccumulator.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/VarianceAccumulatorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/LCPTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/SharedSuffixArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/ssort.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/SuffixArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/SuffixArrayTypes.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/BaseTuple.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/CompressedDNATuple.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/CountedTuple.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/DNATuple.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/DNATupleImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/DNATupleList.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/HashedTupleList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/HashedTupleListImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleCountTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleCountTableImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/tuple.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleListImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleMask.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleMatching.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleMatchingImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleMetrics.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleOperations.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleTranslations.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/FileOfFileNames.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/FileUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/LogUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/PhredUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/RangeUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/RegionUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/RegionUtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/SimpleXMLUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/MappingMetrics.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/alignment/CmpAlignment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/alignment/CmpAlignmentImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/amos/AfgBasWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/amos Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/loadpulses/MetricField.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/loadpulses Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/loadpulses Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/matrix/FlatMatrix.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/matrix Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/matrix/FlatMatrixImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/matrix Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/matrix/Matrix.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/matrix Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/matrix/MatrixImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/matrix Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/metagenome/FindRandomSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/metagenome Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/metagenome/SequenceIndexDatabase.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/metagenome Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/metagenome Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/metagenome/TitleTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/metagenome Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityTransform.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValue.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValueVector.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValueVectorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityTransform.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValue.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValueVector.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValueVectorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/AcqParams.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/BaseFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/BaseFileImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/HoleXY.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/PulseBaseCommon.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/PulseFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/PulseFileImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/ReadInterval.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/ReadType.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/RegionAnnotation.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/RegionAnnotations.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/RegionTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/RegionTypeMap.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/ScanData.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/ZMWGroupEntry.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/AlnGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/AlnInfo.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/MovieInfo.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/RefGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/RefInfo.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/AlignmentSet.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/AlignmentSetImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/CigarString.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/ReadGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/ReferenceSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMAlignment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMFlag.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMHeader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMKeywordValuePair.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMKeywordValuePairImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMReaderImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils/BitUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils/SMRTReadUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils/SMRTTitle.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils/TimeUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CCSSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/ChangeListID.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CommandLineParser.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/Compare4BitCompressed.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CompressedDNASequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CompressedSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CompressedSequenceImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/defs.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/DNASequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/Enumerations.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/FASTAReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/FASTASequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/FASTQReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/FASTQSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/GFFFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/MD5Utils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/MD5UtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/NucConversion.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/PacBioDefs.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/PackedDNASequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/PrettyException.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/ReverseCompressIndex.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/SeqUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/SeqUtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/SMRTSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/StringUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/Types.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/VectorUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/obj-x86_64-linux-gnu/meson-private/libblasr.pc to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig Installing symlink pointing to libblasr.so.5.3.5 to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libblasr.so debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' dh_install -p libpbdata-dev usr/include/libblasr/pbdata usr/include/pbseq dh_install -p libpbihdf-dev usr/include/libblasr/hdf usr/include/pbseq dh_install -p libblasr-dev usr/include/libblasr/alignment usr/include/pbseq find -L debian/*/usr/include/ -type f -regextype posix-egrep -not -regex '.*(hpp|h)$' -delete find debian/*/usr/include/ -name "*.mk" -delete d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libhdf5_serial_cpp103-dev/libhdf5-dev/ \ --override s/libpbbam1.6.0-dev/libpbbam-dev/ \ --override s/libpbcopper1.8.0-dev/libpbcopper-dev/ \ --movedev debian/tmp/usr/include/libblasr usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libblasr.so Library package automatic movement utility --> libhdf5-dev package exists. --> libpbbam-dev package exists. --> libpbcopper-dev package exists. set -e install -d -m 755 debian/libblasr-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libblasr5.3.5/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libblasr.a debian/libblasr-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libblasr.so debian/libblasr-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libblasr.so.5.3.5 debian/libblasr5.3.5/usr/lib/x86_64-linux-gnu PKGDEV=libblasr-dev PKGSHL=libblasr5.3.5 install -d -m 755 debian/libblasr-dev/usr/include mv debian/tmp/usr/include/libblasr debian/libblasr-dev/usr/include install -d -m 755 debian/libblasr-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libblasr-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/libblasr-dev/usr/include/libblasr debian/libblasr-dev/usr/include/pbseq mv debian/libblasr-dev/usr/include/pbseq/libblasr/LibBlasrConfig.h debian/libblasr-dev/usr/include/pbseq dh_install make[1]: Leaving directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libblasr-dev' in '../libblasr-dev_5.3.5+dfsg-11_amd64.deb'. dpkg-deb: building package 'libblasr5.3.5' in '../libblasr5.3.5_5.3.5+dfsg-11_amd64.deb'. dpkg-deb: building package 'libblasr5.3.5-dbgsym' in '../libblasr5.3.5-dbgsym_5.3.5+dfsg-11_amd64.deb'. dpkg-deb: building package 'libpbseq' in '../libpbseq_5.3.5+dfsg-11_amd64.deb'. dpkg-deb: building package 'libpbseq-dev' in '../libpbseq-dev_5.3.5+dfsg-11_amd64.deb'. dpkg-deb: building package 'libpbdata-dev' in '../libpbdata-dev_5.3.5+dfsg-11_amd64.deb'. dpkg-deb: building package 'libpbihdf-dev' in '../libpbihdf-dev_5.3.5+dfsg-11_amd64.deb'. dpkg-genbuildinfo --build=any -O../pbseqlib_5.3.5+dfsg-11_amd64.buildinfo dpkg-genchanges --build=any -O../pbseqlib_5.3.5+dfsg-11_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-02-19T20:37:10Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Thu, 19 Feb 2026 20:37:10 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/pbseqlib-5.3.5+dfsg/ ---------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/pbseqlib-5.3.5+dfsg/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 19 Feb 2026 20:37:11 +0000 | +------------------------------------------------------------------------------+ pbseqlib_5.3.5+dfsg-11_amd64.changes: ------------------------------------- Format: 1.8 Date: Sun, 05 Oct 2025 23:39:29 +0200 Source: pbseqlib Binary: libblasr-dev libblasr5.3.5 libblasr5.3.5-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev Built-For-Profiles: cross nocheck Architecture: amd64 Version: 5.3.5+dfsg-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libblasr-dev - tools for aligning PacBio reads to target sequences (development libblasr5.3.5 - tools for aligning PacBio reads to target sequences libpbdata-dev - tools for handling PacBio sequences (development files) libpbihdf-dev - tools for handling PacBio hdf5 files (development files) libpbseq - library for analyzing PacBio sequencing data libpbseq-dev - library for analyzing PacBio sequencing data (development files) Closes: 1117415 Changes: pbseqlib (5.3.5+dfsg-11) unstable; urgency=medium . * Team upload. * d/control: build depends on libboost-iostreams-dev. (Closes: #1117415) * d/watch: bump to untrackable watch file v5. * d/control: drop redundant Rules-Requires-Root: no. Checksums-Sha1: 5f2ad5abd2b9ba42365bbc2b6f78c0a7f595f1c3 2092072 libblasr-dev_5.3.5+dfsg-11_amd64.deb 58f1af9f8578dd680e0926cfdce268c143e4ccda 9489080 libblasr5.3.5-dbgsym_5.3.5+dfsg-11_amd64.deb 964b43e40fd61eddeb61f8a21a62178ca8597ca8 1088880 libblasr5.3.5_5.3.5+dfsg-11_amd64.deb 0cc4731acfc8636d9a34fa011102a79397ab3901 40900 libpbdata-dev_5.3.5+dfsg-11_amd64.deb c8a465abc1872dd9d55b558cdefc23d06d9aaffe 47372 libpbihdf-dev_5.3.5+dfsg-11_amd64.deb 2d9d8538cc6ea5c5180fb15ed168c2fa017352b9 5152 libpbseq-dev_5.3.5+dfsg-11_amd64.deb dbf30d30a9a56735680b92f94860dafd61fd6249 5124 libpbseq_5.3.5+dfsg-11_amd64.deb 8424517f70a6b0ba0e9aa1a569e94faeb19dbfa8 10809 pbseqlib_5.3.5+dfsg-11_amd64.buildinfo Checksums-Sha256: 7aa644601f8dfec1ef36e19a4cd35e1ef8ff4284a03540d3724a6d99ed6ddc3f 2092072 libblasr-dev_5.3.5+dfsg-11_amd64.deb 0a8478157767121f704786fb1cd86ede83224ee6096886fe3a585104cbcb9e30 9489080 libblasr5.3.5-dbgsym_5.3.5+dfsg-11_amd64.deb 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optional libpbdata-dev_5.3.5+dfsg-11_amd64.deb 45447c8a22e4fa401c4f6b25b3bb9cf1 47372 libdevel optional libpbihdf-dev_5.3.5+dfsg-11_amd64.deb 3bc9264c3d1b8bb762dec591e0c0c89d 5152 libdevel optional libpbseq-dev_5.3.5+dfsg-11_amd64.deb 8a6bbdb087b7e1851eae9aee5c2278c8 5124 science optional libpbseq_5.3.5+dfsg-11_amd64.deb 77f21a76f8a8e5ede50ed24efecd5579 10809 science optional pbseqlib_5.3.5+dfsg-11_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Thu, 19 Feb 2026 20:37:13 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: pbseqlib Binary: libblasr-dev libblasr5.3.5 libblasr5.3.5-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev Architecture: amd64 Version: 5.3.5+dfsg-11 Checksums-Md5: ae16868d12395ac80b7e566e6f1fee1a 2092072 libblasr-dev_5.3.5+dfsg-11_amd64.deb 804dd8fad7e22bdb1a3b4145db7ed46b 9489080 libblasr5.3.5-dbgsym_5.3.5+dfsg-11_amd64.deb 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Checksums-Sha256: 7aa644601f8dfec1ef36e19a4cd35e1ef8ff4284a03540d3724a6d99ed6ddc3f 2092072 libblasr-dev_5.3.5+dfsg-11_amd64.deb 0a8478157767121f704786fb1cd86ede83224ee6096886fe3a585104cbcb9e30 9489080 libblasr5.3.5-dbgsym_5.3.5+dfsg-11_amd64.deb 2544f00aaba05a6285bd46096663c027bcf7a0112109ff7befdf241402a157d6 1088880 libblasr5.3.5_5.3.5+dfsg-11_amd64.deb 0cdb9d0c72447c4e0a233c148b91730161bdf3f88a7f7dfac1804ff55d59e70c 40900 libpbdata-dev_5.3.5+dfsg-11_amd64.deb 888bf6b59b1e19d5529b4c5aa314b6e2d08e7eaefe64f8b6daf81d714ffd4890 47372 libpbihdf-dev_5.3.5+dfsg-11_amd64.deb 279f20a6d25e6b05701561b32654c44875f7562571ce4192341158898691781e 5152 libpbseq-dev_5.3.5+dfsg-11_amd64.deb ffae35aaf5deb10836fd353fdc61b1ed0a2c97cfbb0d8bc68e32de1038524de8 5124 libpbseq_5.3.5+dfsg-11_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Thu, 19 Feb 2026 20:37:08 +0000 Build-Path: /build/reproducible-path/pbseqlib-5.3.5+dfsg Installed-Build-Depends: apt (= 3.1.16), autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8+b1), bash (= 5.3-2), binutils (= 2.46-2), binutils-aarch64-linux-gnu (= 2.46-2), binutils-common (= 2.46-2), bsdextrautils (= 2.41.3-3), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), cmake (= 4.2.3-2), cmake-data (= 4.2.3-2), comerr-dev (= 2.1-1.47.2-3+b8), coreutils (= 9.7-3+b1), cpp (= 4:15.2.0-5), cpp-15 (= 15.2.0-13), cpp-15-aarch64-linux-gnu (= 15.2.0-13), cpp-aarch64-linux-gnu (= 4:15.2.0-5), d-shlibs (= 0.109), dash (= 0.5.12-12+b1), debconf (= 1.5.92), debhelper (= 13.30), debian-archive-keyring (= 2025.1), debianutils (= 5.23.2+b1), dh-autoreconf (= 21+nmu1), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1+b1), dpkg (= 1.23.5), dpkg-dev (= 1.23.5), dwz (= 0.16-2+b1), file (= 1:5.46-5+b1), findutils (= 4.10.0-3+b1), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-13), g++-15-aarch64-linux-gnu (= 15.2.0-13), g++-aarch64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-15 (= 15.2.0-13), gcc-15-aarch64-linux-gnu (= 15.2.0-13), gcc-15-base (= 15.2.0-13), gcc-aarch64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), googletest (= 1.17.0-1), grep (= 3.12-1+b1), groff-base (= 1.23.0-10+b1), gzip (= 1.13-1+b1), hdf5-helpers (= 1.14.6+repack-2), hostname (= 3.25+b1), icu-devtools (= 76.1-4+b1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-2), libacl1 (= 2.3.2-3), libaec-dev (= 1.1.5-1), libaec0 (= 1.1.5-1), libapt-pkg7.0 (= 3.1.16), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.8.5-1), libasan8 (= 15.2.0-13), libatomic1 (= 15.2.0-13), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-2), libblkid1 (= 2.41.3-3), libboost-dev (= 1.83.0.2+b2), libboost-iostreams-dev (= 1.83.0.2+b2), libboost-iostreams1.83-dev (= 1.83.0-5+b1), libboost-iostreams1.83.0 (= 1.83.0-5+b1), libboost-regex1.83-dev (= 1.83.0-5+b1), libboost-regex1.83.0 (= 1.83.0-5+b1), libboost1.83-dev (= 1.83.0-5+b1), libbrotli-dev (= 1.2.0-3), libbrotli1 (= 1.2.0-3), libbz2-1.0 (= 1.0.8-6+b1), libbz2-dev (= 1.0.8-6+b1), libc-bin (= 2.42-13), libc-dev-bin (= 2.42-13), libc-gconv-modules-extra (= 2.42-13), libc6 (= 2.42-13), libc6-dev (= 2.42-13), libcap-ng0 (= 0.8.5-4+b2), libcap2 (= 1:2.75-10+b5), libcc1-0 (= 15.2.0-13), libcom-err2 (= 1.47.2-3+b8), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.46-2), libctf0 (= 2.46-2), libcurl3t64-gnutls (= 8.18.0-2), libcurl4-gnutls-dev (= 8.18.0-2), libcurl4t64 (= 8.18.0-2), libdb5.3t64 (= 5.3.28+dfsg2-11), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.30), libdeflate-dev (= 1.23-2+b1), libdeflate0 (= 1.23-2+b1), libdpkg-perl (= 1.23.5), libelf1t64 (= 0.194-1), libevent-2.1-7t64 (= 2.1.12-stable-10+b2), libexpat1 (= 2.7.4-1), libffi8 (= 3.5.2-3+b1), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-13), libgcc-s1 (= 15.2.0-13), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgfortran5 (= 15.2.0-13), libgmp-dev (= 2:6.3.0+dfsg-5+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b1), libgnutls-dane0t64 (= 3.8.12-2), libgnutls-openssl27t64 (= 3.8.12-2), libgnutls28-dev (= 3.8.12-2), libgnutls30t64 (= 3.8.12-2), libgomp1 (= 15.2.0-13), libgprofng0 (= 2.46-2), libgssapi-krb5-2 (= 1.22.1-2), libgssrpc4t64 (= 1.22.1-2), libgtest-dev (= 1.17.0-1), libhdf5-310 (= 1.14.6+repack-2), libhdf5-cpp-310 (= 1.14.6+repack-2), libhdf5-dev (= 1.14.6+repack-2), libhdf5-fortran-310 (= 1.14.6+repack-2), libhdf5-hl-310 (= 1.14.6+repack-2), libhdf5-hl-cpp-310 (= 1.14.6+repack-2), libhdf5-hl-fortran-310 (= 1.14.6+repack-2), libhogweed6t64 (= 3.10.2-1), libhts-dev (= 1.22.1+ds2-1+b1), libhts3t64 (= 1.22.1+ds2-1+b1), libhtscodecs2 (= 1.6.1-2+b1), libhwasan0 (= 15.2.0-13), libicu-dev (= 76.1-4+b1), libicu76 (= 76.1-4+b1), libidn2-0 (= 2.3.8-4+b1), libidn2-dev (= 2.3.8-4+b1), libisl23 (= 0.27-1+b1), libitm1 (= 15.2.0-13), libjansson4 (= 2.14-2+b4), libjpeg-dev (= 1:2.1.5-4), libjpeg62-turbo (= 1:2.1.5-4), libjpeg62-turbo-dev (= 1:2.1.5-4), libjsoncpp26 (= 1.9.6-5), libk5crypto3 (= 1.22.1-2), libkadm5clnt-mit12 (= 1.22.1-2), libkadm5srv-mit12 (= 1.22.1-2), libkdb5-10t64 (= 1.22.1-2), libkeyutils1 (= 1.6.3-6+b1), libkrb5-3 (= 1.22.1-2), libkrb5-dev (= 1.22.1-2), libkrb5support0 (= 1.22.1-2), libldap-dev (= 2.6.10+dfsg-1+b1), libldap2 (= 2.6.10+dfsg-1+b1), liblsan0 (= 15.2.0-13), liblz4-1 (= 1.10.0-6), liblzma-dev (= 5.8.2-2), liblzma5 (= 5.8.2-2), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmount1 (= 2.41.3-3), libmpc3 (= 1.3.1-2+b1), libmpfr6 (= 4.2.2-2+b1), libncursesw6 (= 6.6+20251231-1), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.68.0-1), libnghttp2-dev (= 1.68.0-1), libnghttp3-9 (= 1.12.0-1), libnghttp3-dev (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-gnutls-dev (= 1.16.0-1), libngtcp2-crypto-gnutls8 (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libngtcp2-dev (= 1.16.0-1), libp11-kit-dev (= 0.25.10-1+b1), libp11-kit0 (= 0.25.10-1+b1), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpbbam-dev (= 2.4.0+dfsg-3), libpbbam2.4.0 (= 2.4.0+dfsg-3), libpbcopper-dev (= 2.3.0+dfsg-4), libpbcopper2.3.0 (= 2.3.0+dfsg-4), libpcre2-8-0 (= 10.46-1+b1), libperl5.40 (= 5.40.1-7), libpipeline1 (= 1.5.8-2), libpkgconf7 (= 2.5.1-4), libproc2-0 (= 2:4.0.4-9+b1), libpsl-dev (= 0.21.2-1.1+b2), libpsl5t64 (= 0.21.2-1.1+b2), libpython3-stdlib (= 3.13.9-3), libpython3.13-minimal (= 3.13.12-1), libpython3.13-stdlib (= 3.13.12-1), libquadmath0 (= 15.2.0-13), libreadline8t64 (= 8.3-4), librhash1 (= 1.4.6-1.1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-3+b1), librtmp1 (= 2.4+20151223.gitfa8646d.1-3+b1), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsframe3 (= 2.46-2), libsmartcols1 (= 2.41.3-3), libsqlite3-0 (= 3.46.1-9), libssh2-1-dev (= 1.11.1-1+b1), libssh2-1t64 (= 1.11.1-1+b1), libssl-dev (= 3.5.5-1), libssl3t64 (= 3.5.5-1), libstdc++-15-dev (= 15.2.0-13), libstdc++6 (= 15.2.0-13), libsystemd0 (= 259.1-1), libsz2 (= 1.1.5-1), libtasn1-6 (= 4.21.0-2), libtasn1-6-dev (= 4.21.0-2), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtsan2 (= 15.2.0-13), libubsan1 (= 15.2.0-13), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 259.1-1), libunbound8 (= 1.24.2-1), libunistring5 (= 1.3-2+b1), libuuid1 (= 2.41.3-3), libuv1t64 (= 1.51.0-2+b1), libxml2-16 (= 2.15.1+dfsg-2+b1), libxxhash0 (= 0.8.3-2+b1), libzstd-dev (= 1.5.7+dfsg-3+b1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.18.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3+b1), man-db (= 2.13.1-1+b1), mawk (= 1.3.4.20260129-1), media-types (= 14.0.0), meson (= 1.10.1-1), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), netbase (= 6.5), nettle-dev (= 3.10.2-1), ninja-build (= 1.13.2-1+b1), openssl-provider-legacy (= 3.5.5-1), patch (= 2.8-2+b1), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.4-9+b1), python3 (= 3.13.9-3), python3-autocommand (= 2.2.2-4), python3-inflect (= 7.5.0-1), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.9-3), python3-more-itertools (= 10.8.0-1), python3-pkg-resources (= 78.1.1-0.1), python3-setuptools (= 78.1.1-0.1), python3-typeguard (= 4.4.4-2), python3-typing-extensions (= 4.15.0-2), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.12-1), python3.13-minimal (= 3.13.12-1), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.3-1+b2), sed (= 4.9-2+b2), sensible-utils (= 0.0.26), sqv (= 1.3.0-5), sysvinit-utils (= 3.15-6+b1), tar (= 1.35+dfsg-3.1+b1), tzdata (= 2025c-3), util-linux (= 2.41.3-3), xz-utils (= 5.8.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1759700369" +------------------------------------------------------------------------------+ | Package contents Thu, 19 Feb 2026 20:37:13 +0000 | +------------------------------------------------------------------------------+ libblasr-dev_5.3.5+dfsg-11_amd64.deb ------------------------------------ new Debian package, version 2.0. size 2092072 bytes: control archive=9480 bytes. 805 bytes, 18 lines control 45416 bytes, 467 lines md5sums Package: libblasr-dev Source: pbseqlib Version: 5.3.5+dfsg-11 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 15925 Depends: libblasr5.3.5 (= 5.3.5+dfsg-11), libpbdata-dev (= 5.3.5+dfsg-11), libhdf5-dev, libpbbam-dev, libpbcopper-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/PacificBiosciences/blasr_libcpp Description: tools for aligning PacBio reads to target sequences (development files) Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment. . 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libpbcopper2.3.0 (>= 2.3.0+dfsg), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/PacificBiosciences/blasr_libcpp Description: tools for aligning PacBio reads to target sequences Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment. . 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./usr/share/doc/libpbdata-dev/changelog.Debian.gz -rw-r--r-- root/root 4767 2025-10-05 21:39 ./usr/share/doc/libpbdata-dev/copyright libpbihdf-dev_5.3.5+dfsg-11_amd64.deb ------------------------------------- new Debian package, version 2.0. size 47372 bytes: control archive=2144 bytes. 686 bytes, 18 lines control 4158 bytes, 55 lines md5sums Package: libpbihdf-dev Source: pbseqlib Version: 5.3.5+dfsg-11 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 329 Depends: libhdf5-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/PacificBiosciences/blasr_libcpp Description: tools for handling PacBio hdf5 files (development files) Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. 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PacBio sequencing data (development files) Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment. . This is a metapackage that depends on the pbseqlib component development files. drwxr-xr-x root/root 0 2025-10-05 21:39 ./ drwxr-xr-x root/root 0 2025-10-05 21:39 ./usr/ drwxr-xr-x root/root 0 2025-10-05 21:39 ./usr/share/ drwxr-xr-x root/root 0 2025-10-05 21:39 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-05 21:39 ./usr/share/doc/libpbseq-dev/ -rw-r--r-- root/root 1875 2025-10-05 21:39 ./usr/share/doc/libpbseq-dev/changelog.Debian.gz -rw-r--r-- root/root 4767 2025-10-05 21:39 ./usr/share/doc/libpbseq-dev/copyright libpbseq_5.3.5+dfsg-11_amd64.deb -------------------------------- new Debian package, version 2.0. size 5124 bytes: control archive=752 bytes. 683 bytes, 17 lines control 144 bytes, 2 lines md5sums Package: libpbseq Source: pbseqlib Version: 5.3.5+dfsg-11 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 13 Depends: libblasr5.3.5 (= 5.3.5+dfsg-11) Section: science Priority: optional Multi-Arch: same Homepage: https://github.com/PacificBiosciences/blasr_libcpp Description: library for analyzing PacBio sequencing data Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment. . This is a metapackage that depends on the pbseqlib component shared libraries. drwxr-xr-x root/root 0 2025-10-05 21:39 ./ drwxr-xr-x root/root 0 2025-10-05 21:39 ./usr/ drwxr-xr-x root/root 0 2025-10-05 21:39 ./usr/share/ drwxr-xr-x root/root 0 2025-10-05 21:39 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-05 21:39 ./usr/share/doc/libpbseq/ -rw-r--r-- root/root 1875 2025-10-05 21:39 ./usr/share/doc/libpbseq/changelog.Debian.gz -rw-r--r-- root/root 4767 2025-10-05 21:39 ./usr/share/doc/libpbseq/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-twDZT7/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ Sources [1500 B] Get:5 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ Packages [1580 B] Fetched 3695 B in 0s (140 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... 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libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:amd64 shared-mime-info t1utils ucf unzip 0 upgraded, 149 newly installed, 0 to remove and 0 not upgraded. Need to get 17.5 MB of archives. After this operation, 77.9 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-twDZT7/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [832 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.5.5-1 [1461 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b5 [9644 B] Get:5 http://mirror.einval.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:6 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.87.2-3 [1444 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b4 [754 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.18.0-2 [366 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libfyaml0 arm64 0.9.4-1 [245 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libstemmer0d arm64 3.0.1-1+b1 [123 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libxmlb2 arm64 0.3.24-2 [58.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libappstream5 arm64 1.1.2-1 [210 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 appstream arm64 1.1.2-1 [564 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.68-1+b1 [33.1 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libgpg-error0 arm64 1.58-2 [84.6 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libassuan9 arm64 3.0.2-2+b1 [59.0 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.2-3+b1 [763 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.4.8-5 [121 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libksba8 arm64 1.6.7-2+b2 [125 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-3+b1 [23.1 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.4.8-5 [572 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.20.1-1 [3319 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.43 [64.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b3 [10.6 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-3 [15.5 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b5 [22.3 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:35 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b2 [43.9 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.66-2 [116 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.34-2 [111 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b3 [97.2 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.71-1 [217 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:44 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b6 [35.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b2 [13.7 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b2 [23.9 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:54 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.40-1 [129 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-3+b1 [31.5 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b6 [97.8 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.86-1 [24.0 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b5 [28.2 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:74 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:75 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libfile-libmagic-perl arm64 1.23-2+b3 [31.1 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 7.01-1 [80.0 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:92 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3+b1 [326 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.098-1 [229 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.24-1 [23.2 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.81-1 [186 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.16~rc1-3 [38.5 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b2 [50.7 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2.1+b1 [33.8 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:115 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.6.1-1 [140 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-4 [10.9 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1+b1 [12.4 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b5 [17.4 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b4 [11.4 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.637-1+b1 [41.6 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b4 [97.1 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b4 [99.6 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:128 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.49-1 [64.3 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.31-1 [27.2 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b5 [24.5 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b5 [8792 B] Get:132 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.18-1+b1 [13.5 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2+b2 [171 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.46-1 [77.1 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.63-1 [20.1 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.20-1 [117 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-7 [300 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2+b1 [47.8 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.904.0+ds-1 [43.6 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.13~rc1-3 [61.2 kB] Get:145 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2+b2 [82.0 kB] Get:146 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.3-1+b1 [74.8 kB] Get:147 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4+b2 [57.5 kB] Get:148 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-29+b1 [163 kB] Get:149 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.129.0 [1068 kB] Preconfiguring packages ... Fetched 17.5 MB in 0s (61.2 MB/s) Selecting previously unselected package openssl. (Reading database ... 44809 files and directories currently installed.) Preparing to unpack .../000-openssl_3.5.5-1_arm64.deb ... Unpacking openssl (3.5.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../001-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../002-libtext-charwidth-perl_0.04-11+b5_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b5) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../003-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../004-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... 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Unpacking lintian (2.129.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:amd64. Preparing to unpack .../148-sbuild-build-depends-lintian-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.43) ... Setting up liblz1:arm64 (1.16~rc1-3) ... Setting up libberkeleydb-perl:arm64 (0.66-2) ... Setting up plzip (1.13~rc1-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:arm64 (0.04-11+b5) ... Setting up libnpth0t64:arm64 (1.8-3+b1) ... Setting up libunicode-utf8-perl (0.63-1) ... Setting up libmouse-perl:arm64 (2.6.1-1) ... Setting up libgpg-error0:arm64 (1.58-2) ... Setting up libdata-messagepack-perl (1.02-3+b1) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.47-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-2+b1) ... Setting up libsub-identify-perl (0.14-4) ... Setting up libcpanel-json-xs-perl:arm64 (4.40-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.86-1) ... Setting up unzip (6.0-29+b1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.904.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:arm64 (1.11.2-3+b1) ... Setting up liblzo2-2:arm64 (2.10-3+b2) ... Setting up libtime-moment-perl (0.46-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b4) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libnet-netmask-perl (2.0003-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libfyaml0:arm64 (0.9.4-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.3-1+b1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b6) ... Setting up libglib2.0-0t64:arm64 (2.87.2-3) ... No schema files found: doing nothing. Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.35-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b4) ... Setting up t1utils (1.41-4+b2) ... Setting up shared-mime-info (2.4-5+b4) ... Setting up diffstat (1.68-1+b1) ... Setting up libvariable-magic-perl (0.64-1+b2) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b3) ... Setting up libfile-libmagic-perl (1.23-2+b3) ... Setting up ucf (3.0052) ... Setting up libparams-util-perl (1.102-3+b2) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.28-1+b1) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:arm64 (0.637-1+b1) ... Setting up libpath-tiny-perl (0.148-1) ... Setting up lzop (1.04-2+b2) ... Setting up libassuan9:arm64 (3.0.2-2+b1) ... Setting up gpgconf (2.4.8-5) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b6) ... Setting up libstemmer0d:arm64 (3.0.1-1+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b5) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.5.5-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b5) ... Setting up libperlio-gzip-perl (0.20-1+b5) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b4) ... Setting up libmarkdown2:arm64 (2.2.7-2.1+b1) ... Setting up liburi-perl (5.34-2) ... Setting up iso-codes (4.20.1-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b5) ... Setting up libnet-ssleay-perl:arm64 (1.94-3+b1) ... Setting up libksba8:arm64 (1.6.7-2+b2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxmlb2:arm64 (0.3.24-2) ... Setting up libcurl3t64-gnutls:arm64 (8.18.0-2) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1+b1) ... Setting up libappstream5:arm64 (1.1.2-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-3) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1) ... Setting up appstream (1.1.2-1) ... ✔ Metadata cache was updated successfully. Setting up libdata-optlist-perl (0.114-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-7) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.31-1) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b3) ... Setting up libio-socket-ssl-perl (2.098-1) ... Setting up gpg (2.4.8-5) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b5) ... Setting up libcgi-pm-perl (4.71-1) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.81-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.20-1) ... Setting up lintian (2.129.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.42-13) ... Processing triggers for man-db (2.13.1-1+b1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build Thu, 19 Feb 2026 20:39:08 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Thu, 19 Feb 2026 20:39:08 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 19 Feb 2026 20:39:13 +0000 | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 1700 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 99 Job: pbseqlib_5.3.5+dfsg-11 Lintian: pass Machine Architecture: arm64 Package: pbseqlib Package-Time: 1854 Source-Version: 5.3.5+dfsg-11 Space: n/a Status: successful Version: 5.3.5+dfsg-11 -------------------------------------------------------------------------------- Finished at 2026-02-19T20:37:10Z Build needed 00:30:54, no disk space