sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir

+==============================================================================+
| pbseqlib 5.3.5+dfsg-2 (amd64)                Wed, 27 Oct 2021 00:23:21 +0000 |
+==============================================================================+

Package: pbseqlib
Version: 5.3.5+dfsg-2
Source Version: 5.3.5+dfsg-2
Distribution: unstable
Machine Architecture: arm64
Host Architecture: amd64
Build Architecture: arm64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-2a0e173b-ea6a-423c-ab44-6c30e931ce5d' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-VzLbv4/resolver-OFirZg' with '<<RESOLVERDIR>>'

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| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://mirror.einval.org/debian sid InRelease [165 kB]
Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index
Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index
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Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index
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Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8658 kB]
Fetched 26.9 MB in 7s (3844 kB/s)
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0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

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| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'pbseqlib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pbseqlib.git
Please use:
git clone https://salsa.debian.org/med-team/pbseqlib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 985 kB of source archives.
Get:1 http://mirror.einval.org/debian sid/main pbseqlib 5.3.5+dfsg-2 (dsc) [2428 B]
Get:2 http://mirror.einval.org/debian sid/main pbseqlib 5.3.5+dfsg-2 (tar) [973 kB]
Get:3 http://mirror.einval.org/debian sid/main pbseqlib 5.3.5+dfsg-2 (diff) [9444 B]
Fetched 985 kB in 0s (12.4 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pbseqlib-VzLbv4/pbseqlib-5.3.5+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbseqlib-VzLbv4' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev, libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev, libpbcopper-dev, libhts-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu
  bsdextrautils cmake cmake-data cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu
  cross-config crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf
  dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file
  g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-10-base:amd64
  gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu
  gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base
  googletest groff-base hdf5-helpers:amd64 intltool-debian libaec-dev:amd64
  libaec0:amd64 libarchive-zip-perl libarchive13 libasan6:amd64
  libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross
  libboost-dev:amd64 libboost1.74-dev:amd64 libbrotli1 libbrotli1:amd64
  libbz2-1.0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64
  libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64
  libcurl3-gnutls:amd64 libcurl4 libcurl4:amd64 libcurl4-gnutls-dev:amd64
  libdb5.3:amd64 libdebhelper-perl libdebian-dpkgcross-perl
  libdeflate-dev:amd64 libdeflate0:amd64 libelf1 libexpat1 libffi8:amd64
  libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl
  libgcc-10-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64
  libgcc-s1-amd64-cross libgfortran5:amd64 libglib2.0-0 libgmp10:amd64
  libgnutls30:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64
  libgtest-dev:amd64 libhdf5-103-1:amd64 libhdf5-cpp-103-1:amd64
  libhdf5-dev:amd64 libhdf5-fortran-102:amd64 libhdf5-hl-100:amd64
  libhdf5-hl-cpp-100:amd64 libhdf5-hl-fortran-100:amd64 libhogweed6:amd64
  libhts-dev:amd64 libhts3:amd64 libhtscodecs2:amd64 libicu67 libidn2-0:amd64
  libio-string-perl libitm1:amd64 libitm1-amd64-cross libjpeg-dev:amd64
  libjpeg62-turbo:amd64 libjpeg62-turbo-dev:amd64 libjsoncpp24
  libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64
  libldap-2.4-2 libldap-2.4-2:amd64 liblocale-gettext-perl liblsan0:amd64
  liblsan0-amd64-cross liblzma-dev:amd64 liblzma5:amd64 libmagic-mgc libmagic1
  libmpdec3 libncurses6 libncursesw6 libnettle8:amd64 libnghttp2-14
  libnghttp2-14:amd64 libnsl-dev:amd64 libnsl2:amd64 libp11-kit0:amd64
  libpbbam-dev:amd64 libpbbam1.6.0:amd64 libpbcopper-dev:amd64
  libpbcopper1.8.0:amd64 libpipeline1 libprocps8 libpsl5 libpsl5:amd64
  libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib
  libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 librhash0 librtmp1
  librtmp1:amd64 libsasl2-2 libsasl2-2:amd64 libsasl2-modules-db
  libsasl2-modules-db:amd64 libsigsegv2 libsqlite3-0 libssh2-1 libssh2-1:amd64
  libssl-dev:amd64 libssl1.1:amd64 libstdc++-10-dev:amd64
  libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross
  libsub-override-perl libsz2:amd64 libtasn1-6:amd64 libtirpc-dev:amd64
  libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64
  libubsan1-amd64-cross libuchardet0 libunistring2:amd64 libuv1
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64
  linux-libc-dev-amd64-cross m4 man-db media-types meson ninja-build
  pkg-config po-debconf procps python3 python3-distutils python3-lib2to3
  python3-minimal python3-pkg-resources python3.9 python3.9-minimal
  readline-common sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc
  gcc-11-locales cpp-doc dh-make binutils-multiarch
  g++-11-multilib-x86-64-linux-gnu gcc-11-doc gcc-11-multilib-x86-64-linux-gnu
  manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc
  libasprintf-dev libgettextpo-dev groff lrzip libboost-doc:amd64
  libboost1.74-doc:amd64 libboost-atomic1.74-dev:amd64
  libboost-chrono1.74-dev:amd64 libboost-container1.74-dev:amd64
  libboost-context1.74-dev:amd64 libboost-contract1.74-dev:amd64
  libboost-coroutine1.74-dev:amd64 libboost-date-time1.74-dev:amd64
  libboost-exception1.74-dev:amd64 libboost-fiber1.74-dev:amd64
  libboost-filesystem1.74-dev:amd64 libboost-graph1.74-dev:amd64
  libboost-graph-parallel1.74-dev:amd64 libboost-iostreams1.74-dev:amd64
  libboost-locale1.74-dev:amd64 libboost-log1.74-dev:amd64
  libboost-math1.74-dev:amd64 libboost-mpi1.74-dev:amd64
  libboost-mpi-python1.74-dev:amd64 libboost-numpy1.74-dev:amd64
  libboost-program-options1.74-dev:amd64 libboost-python1.74-dev:amd64
  libboost-random1.74-dev:amd64 libboost-regex1.74-dev:amd64
  libboost-serialization1.74-dev:amd64 libboost-stacktrace1.74-dev:amd64
  libboost-system1.74-dev:amd64 libboost-test1.74-dev:amd64
  libboost-thread1.74-dev:amd64 libboost-timer1.74-dev:amd64
  libboost-type-erasure1.74-dev:amd64 libboost-wave1.74-dev:amd64
  libboost1.74-tools-dev:amd64 libmpfrc++-dev:amd64 libntl-dev:amd64
  libboost-nowide1.74-dev:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64
  libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libcurl4-doc:amd64
  libgnutls28-dev:amd64 libidn11-dev:amd64 libkrb5-dev:amd64
  libldap2-dev:amd64 librtmp-dev:amd64 libssh2-1-dev:amd64 gnutls-bin:amd64
  krb5-doc:amd64 krb5-user:amd64 libhdf5-doc:amd64 liblzma-doc:amd64
  libssl-doc:amd64 libstdc++-10-doc:amd64 libtool-doc gfortran
  | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less
  www-browser libmail-box-perl python3-doc python3-tk python3-venv
  python3-setuptools python3.9-venv python3.9-doc binfmt-support readline-doc
Recommended packages:
  curl | wget | lynx ca-certificates:amd64 ca-certificates
  libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
  krb5-locales:amd64 libldap-common libldap-common:amd64 libgpm2 publicsuffix
  publicsuffix:amd64 libsasl2-modules libsasl2-modules:amd64 libltdl-dev
  libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl
  libmail-sendmail-perl psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu
  bsdextrautils cmake cmake-data cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu
  cross-config crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf
  dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file
  g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-10-base:amd64
  gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu
  gcc-11-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base
  googletest groff-base hdf5-helpers:amd64 intltool-debian libaec-dev:amd64
  libaec0:amd64 libarchive-zip-perl libarchive13 libasan6:amd64
  libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross
  libboost-dev:amd64 libboost1.74-dev:amd64 libbrotli1 libbrotli1:amd64
  libbz2-1.0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64
  libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64
  libcurl3-gnutls:amd64 libcurl4 libcurl4:amd64 libcurl4-gnutls-dev:amd64
  libdb5.3:amd64 libdebhelper-perl libdebian-dpkgcross-perl
  libdeflate-dev:amd64 libdeflate0:amd64 libelf1 libexpat1 libffi8:amd64
  libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl
  libgcc-10-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64
  libgcc-s1-amd64-cross libgfortran5:amd64 libglib2.0-0 libgmp10:amd64
  libgnutls30:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64
  libgtest-dev:amd64 libhdf5-103-1:amd64 libhdf5-cpp-103-1:amd64
  libhdf5-dev:amd64 libhdf5-fortran-102:amd64 libhdf5-hl-100:amd64
  libhdf5-hl-cpp-100:amd64 libhdf5-hl-fortran-100:amd64 libhogweed6:amd64
  libhts-dev:amd64 libhts3:amd64 libhtscodecs2:amd64 libicu67 libidn2-0:amd64
  libio-string-perl libitm1:amd64 libitm1-amd64-cross libjpeg-dev:amd64
  libjpeg62-turbo:amd64 libjpeg62-turbo-dev:amd64 libjsoncpp24
  libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64
  libldap-2.4-2 libldap-2.4-2:amd64 liblocale-gettext-perl liblsan0:amd64
  liblsan0-amd64-cross liblzma-dev:amd64 liblzma5:amd64 libmagic-mgc libmagic1
  libmpdec3 libncurses6 libncursesw6 libnettle8:amd64 libnghttp2-14
  libnghttp2-14:amd64 libnsl-dev:amd64 libnsl2:amd64 libp11-kit0:amd64
  libpbbam-dev:amd64 libpbbam1.6.0:amd64 libpbcopper-dev:amd64
  libpbcopper1.8.0:amd64 libpipeline1 libprocps8 libpsl5 libpsl5:amd64
  libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib
  libquadmath0:amd64 libquadmath0-amd64-cross libreadline8 librhash0 librtmp1
  librtmp1:amd64 libsasl2-2 libsasl2-2:amd64 libsasl2-modules-db
  libsasl2-modules-db:amd64 libsigsegv2 libsqlite3-0 libssh2-1 libssh2-1:amd64
  libssl-dev:amd64 libssl1.1:amd64 libstdc++-10-dev:amd64
  libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross
  libsub-override-perl libsz2:amd64 libtasn1-6:amd64 libtirpc-dev:amd64
  libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64
  libubsan1-amd64-cross libuchardet0 libunistring2:amd64 libuv1
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64
  linux-libc-dev-amd64-cross m4 man-db media-types meson ninja-build
  pkg-config po-debconf procps python3 python3-distutils python3-lib2to3
  python3-minimal python3-pkg-resources python3.9 python3.9-minimal
  readline-common sbuild-build-depends-main-dummy:amd64 sensible-utils ucf
  zlib1g:amd64 zlib1g-dev:amd64
0 upgraded, 200 newly installed, 0 to remove and 0 not upgraded.
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Get:4 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-7 [883 kB]
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Get:6 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.9.4-2 [1336 kB]
Get:7 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB]
Get:8 http://mirror.einval.org/debian sid/main arm64 libpython3.9-minimal arm64 3.9.7-4 [800 kB]
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Get:12 http://mirror.einval.org/debian sid/main arm64 media-types all 4.0.0 [30.3 kB]
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Get:15 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1-2 [73.8 kB]
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Get:19 http://mirror.einval.org/debian sid/main arm64 python3.9 arm64 3.9.7-4 [480 kB]
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Get:23 http://mirror.einval.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-10 [206 kB]
Get:24 http://mirror.einval.org/debian sid/main arm64 libncurses6 arm64 6.2+20210905-1 [93.1 kB]
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Get:34 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB]
Get:35 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB]
Get:36 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:37 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1 [823 kB]
Get:38 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB]
Get:39 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB]
Get:40 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.12+dfsg-5 [632 kB]
Get:41 http://mirror.einval.org/debian sid/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB]
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Get:47 http://mirror.einval.org/debian sid/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB]
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Get:49 http://mirror.einval.org/debian sid/main arm64 libssh2-1 arm64 1.10.0-2 [172 kB]
Get:50 http://mirror.einval.org/debian sid/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB]
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Get:56 http://mirror.einval.org/debian sid/main arm64 cmake-data all 3.21.3-5 [1878 kB]
Get:57 http://mirror.einval.org/debian sid/main arm64 cmake arm64 3.21.3-5 [5144 kB]
Get:58 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu-base arm64 11.2.0-9cross1 [205 kB]
Get:59 http://mirror.einval.org/debian sid/main arm64 cpp-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [48.2 MB]
Get:60 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:11.2.0-2 [17.0 kB]
Get:61 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB]
Get:62 http://mirror.einval.org/debian sid/main arm64 binutils-x86-64-linux-gnu arm64 2.37-7 [2046 kB]
Get:63 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB]
Get:64 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-amd64-cross all 11.2.0-9cross1 [42.0 kB]
Get:65 http://mirror.einval.org/debian sid/main arm64 libgomp1-amd64-cross all 11.2.0-9cross1 [104 kB]
Get:66 http://mirror.einval.org/debian sid/main arm64 libitm1-amd64-cross all 11.2.0-9cross1 [25.5 kB]
Get:67 http://mirror.einval.org/debian sid/main arm64 libatomic1-amd64-cross all 11.2.0-9cross1 [8764 B]
Get:68 http://mirror.einval.org/debian sid/main arm64 libasan6-amd64-cross all 11.2.0-9cross1 [2044 kB]
Get:69 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 11.2.0-9cross1 [885 kB]
Get:70 http://mirror.einval.org/debian sid/main arm64 libtsan0-amd64-cross all 11.2.0-9cross1 [2010 kB]
Get:71 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.32-1cross4 [1570 kB]
Get:72 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 11.2.0-9cross1 [535 kB]
Get:73 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 11.2.0-9cross1 [834 kB]
Get:74 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 11.2.0-9cross1 [145 kB]
Get:75 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-amd64-cross all 11.2.0-9cross1 [2357 kB]
Get:76 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [54.7 MB]
Get:77 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:11.2.0-2 [1460 B]
Get:78 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.10.46-4cross4 [1468 kB]
Get:79 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.32-1cross4 [2248 kB]
Get:80 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-amd64-cross all 11.2.0-9cross1 [1952 kB]
Get:81 http://mirror.einval.org/debian sid/main arm64 g++-11-x86-64-linux-gnu arm64 11.2.0-9cross1 [52.2 MB]
Get:82 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:11.2.0-2 [1176 B]
Get:83 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:84 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB]
Get:85 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB]
Get:86 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB]
Get:87 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:88 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0134+dfsg-2+b1 [326 kB]
Get:89 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:90 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB]
Get:91 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB]
Get:92 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:93 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB]
Get:94 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB]
Get:95 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB]
Get:96 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B]
Get:97 http://mirror.einval.org/debian sid/main arm64 d-shlibs all 0.103 [18.2 kB]
Get:98 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.5.2 [192 kB]
Get:99 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB]
Get:100 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:101 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:102 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:103 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB]
Get:104 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.12.0-2 [15.5 kB]
Get:105 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.185-2 [171 kB]
Get:106 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB]
Get:107 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB]
Get:108 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:109 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:110 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.5.2 [1056 kB]
Get:111 http://mirror.einval.org/debian sid/main arm64 googletest all 1.11.0-2 [535 kB]
Get:112 http://mirror.einval.org/debian sid/main amd64 hdf5-helpers amd64 1.10.7+repack-4 [42.8 kB]
Get:113 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 11.2.0-10 [42.0 kB]
Get:114 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.32-4 [2820 kB]
Get:115 http://mirror.einval.org/debian sid/main amd64 libaec0 amd64 1.0.6-1 [20.3 kB]
Get:116 http://mirror.einval.org/debian sid/main amd64 libsz2 amd64 1.0.6-1 [7492 B]
Get:117 http://mirror.einval.org/debian sid/main amd64 libaec-dev amd64 1.0.6-1 [18.9 kB]
Get:118 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 11.2.0-10 [2050 kB]
Get:119 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 11.2.0-10 [9052 B]
Get:120 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 11.2.0-10 [106 kB]
Get:121 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 11.2.0-10 [26.0 kB]
Get:122 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 11.2.0-10 [886 kB]
Get:123 http://mirror.einval.org/debian sid/main amd64 libtsan0 amd64 11.2.0-10 [2019 kB]
Get:124 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 11.2.0-10 [577 kB]
Get:125 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 11.2.0-10 [835 kB]
Get:126 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 11.2.0-10 [145 kB]
Get:127 http://mirror.einval.org/debian sid/main amd64 libgcc-10-dev amd64 10.3.0-11 [2323 kB]
Get:128 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.14.12-1 [1434 kB]
Get:129 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.25-2 [89.2 kB]
Get:130 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.25-2 [104 kB]
Get:131 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.4-1 [75.2 kB]
Get:132 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.18.3-7 [65.4 kB]
Get:133 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.18.3-7 [113 kB]
Get:134 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB]
Get:135 http://mirror.einval.org/debian sid/main amd64 libssl1.1 amd64 1.1.1l-1 [1555 kB]
Get:136 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.18.3-7 [363 kB]
Get:137 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.18.3-7 [165 kB]
Get:138 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB]
Get:139 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB]
Get:140 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB]
Get:141 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB]
Get:142 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.32-4 [2251 kB]
Get:143 http://mirror.einval.org/debian sid/main amd64 libstdc++-10-dev amd64 10.3.0-11 [1750 kB]
Get:144 http://mirror.einval.org/debian sid/main amd64 libboost1.74-dev amd64 1.74.0-11 [9533 kB]
Get:145 http://mirror.einval.org/debian sid/main amd64 libboost-dev amd64 1.74.0.3 [4548 B]
Get:146 http://mirror.einval.org/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB]
Get:147 http://mirror.einval.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-4 [45.8 kB]
Get:148 http://mirror.einval.org/debian sid/main amd64 libgmp10 amd64 2:6.2.1+dfsg-2 [561 kB]
Get:149 http://mirror.einval.org/debian sid/main amd64 libnettle8 amd64 3.7.3-1 [270 kB]
Get:150 http://mirror.einval.org/debian sid/main amd64 libhogweed6 amd64 3.7.3-1 [320 kB]
Get:151 http://mirror.einval.org/debian sid/main amd64 libunistring2 amd64 0.9.10-6 [384 kB]
Get:152 http://mirror.einval.org/debian sid/main amd64 libidn2-0 amd64 2.3.2-2 [95.3 kB]
Get:153 http://mirror.einval.org/debian sid/main amd64 libffi8 amd64 3.4.2-3 [24.8 kB]
Get:154 http://mirror.einval.org/debian sid/main amd64 libp11-kit0 amd64 0.24.0-5 [346 kB]
Get:155 http://mirror.einval.org/debian sid/main amd64 libtasn1-6 amd64 4.17.0-2 [55.2 kB]
Get:156 http://mirror.einval.org/debian sid/main amd64 libgnutls30 amd64 3.7.2-2 [1350 kB]
Get:157 http://mirror.einval.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.8 [687 kB]
Get:158 http://mirror.einval.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB]
Get:159 http://mirror.einval.org/debian sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB]
Get:160 http://mirror.einval.org/debian sid/main amd64 libldap-2.4-2 amd64 2.4.59+dfsg-1 [232 kB]
Get:161 http://mirror.einval.org/debian sid/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB]
Get:162 http://mirror.einval.org/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB]
Get:163 http://mirror.einval.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB]
Get:164 http://mirror.einval.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get:165 http://mirror.einval.org/debian sid/main amd64 libssh2-1 amd64 1.10.0-2 [178 kB]
Get:166 http://mirror.einval.org/debian sid/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+b1 [338 kB]
Get:167 http://mirror.einval.org/debian sid/main amd64 libcurl4 amd64 7.74.0-1.3+b1 [341 kB]
Get:168 http://mirror.einval.org/debian sid/main amd64 libcurl4-gnutls-dev amd64 7.74.0-1.3+b1 [429 kB]
Get:169 http://mirror.einval.org/debian sid/main amd64 libdeflate0 amd64 1.8-1 [53.1 kB]
Get:170 http://mirror.einval.org/debian sid/main amd64 libdeflate-dev amd64 1.8-1 [46.7 kB]
Get:171 http://mirror.einval.org/debian sid/main amd64 libgfortran5 amd64 11.2.0-10 [710 kB]
Get:172 http://mirror.einval.org/debian sid/main arm64 libglib2.0-0 arm64 2.70.0-3 [1310 kB]
Get:173 http://mirror.einval.org/debian sid/main amd64 libgtest-dev amd64 1.11.0-2 [231 kB]
Get:174 http://mirror.einval.org/debian sid/main amd64 libhdf5-103-1 amd64 1.10.7+repack-4 [1236 kB]
Get:175 http://mirror.einval.org/debian sid/main amd64 libhdf5-cpp-103-1 amd64 1.10.7+repack-4 [145 kB]
Get:176 http://mirror.einval.org/debian sid/main amd64 libhdf5-fortran-102 amd64 1.10.7+repack-4 [108 kB]
Get:177 http://mirror.einval.org/debian sid/main amd64 libhdf5-hl-100 amd64 1.10.7+repack-4 [84.1 kB]
Get:178 http://mirror.einval.org/debian sid/main amd64 libhdf5-hl-fortran-100 amd64 1.10.7+repack-4 [59.2 kB]
Get:179 http://mirror.einval.org/debian sid/main amd64 libhdf5-hl-cpp-100 amd64 1.10.7+repack-4 [40.2 kB]
Get:180 http://mirror.einval.org/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB]
Get:181 http://mirror.einval.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB]
Get:182 http://mirror.einval.org/debian sid/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB]
Get:183 http://mirror.einval.org/debian sid/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB]
Get:184 http://mirror.einval.org/debian sid/main amd64 libssl-dev amd64 1.1.1l-1 [1809 kB]
Get:185 http://mirror.einval.org/debian sid/main amd64 libhdf5-dev amd64 1.10.7+repack-4 [2495 kB]
Get:186 http://mirror.einval.org/debian sid/main amd64 libhtscodecs2 amd64 1.1.1-3+b1 [50.1 kB]
Get:187 http://mirror.einval.org/debian sid/main amd64 liblzma5 amd64 5.2.5-2 [168 kB]
Get:188 http://mirror.einval.org/debian sid/main amd64 libhts3 amd64 1.13+ds-2 [395 kB]
Get:189 http://mirror.einval.org/debian sid/main amd64 liblzma-dev amd64 5.2.5-2 [229 kB]
Get:190 http://mirror.einval.org/debian sid/main amd64 libhts-dev amd64 1.13+ds-2 [4086 kB]
Get:191 http://mirror.einval.org/debian sid/main amd64 libpbcopper1.8.0 amd64 1.8.0+dfsg-2+b1 [452 kB]
Get:192 http://mirror.einval.org/debian sid/main amd64 libpbbam1.6.0 amd64 1.6.0+dfsg-2 [687 kB]
Get:193 http://mirror.einval.org/debian sid/main amd64 libpbbam-dev amd64 1.6.0+dfsg-2 [87.2 kB]
Get:194 http://mirror.einval.org/debian sid/main amd64 libpbcopper-dev amd64 1.8.0+dfsg-2+b1 [707 kB]
Get:195 http://mirror.einval.org/debian sid/main arm64 ninja-build arm64 1.10.1-1 [107 kB]
Get:196 http://mirror.einval.org/debian sid/main arm64 python3-pkg-resources all 58.2.0-1 [192 kB]
Get:197 http://mirror.einval.org/debian sid/main arm64 python3-lib2to3 all 3.9.7-1 [79.4 kB]
Get:198 http://mirror.einval.org/debian sid/main arm64 python3-distutils all 3.9.7-1 [146 kB]
Get:199 http://mirror.einval.org/debian sid/main arm64 meson all 0.60.0-1 [511 kB]
Get:200 http://mirror.einval.org/debian sid/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 263 MB in 4s (62.7 MB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12313 files and directories currently installed.)
Preparing to unpack .../0-bsdextrautils_2.37.2-4_arm64.deb ...
Unpacking bsdextrautils (2.37.2-4) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../2-groff-base_1.22.4-7_arm64.deb ...
Unpacking groff-base (1.22.4-7) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package liblocale-gettext-perl.
Preparing to unpack .../5-liblocale-gettext-perl_1.07-4+b1_arm64.deb ...
Unpacking liblocale-gettext-perl (1.07-4+b1) ...
Selecting previously unselected package libpython3.9-minimal:arm64.
Preparing to unpack .../6-libpython3.9-minimal_3.9.7-4_arm64.deb ...
Unpacking libpython3.9-minimal:arm64 (3.9.7-4) ...
Selecting previously unselected package libexpat1:arm64.
Preparing to unpack .../7-libexpat1_2.4.1-3_arm64.deb ...
Unpacking libexpat1:arm64 (2.4.1-3) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../8-python3.9-minimal_3.9.7-4_arm64.deb ...
Unpacking python3.9-minimal (3.9.7-4) ...
Setting up libpython3.9-minimal:arm64 (3.9.7-4) ...
Setting up libexpat1:arm64 (2.4.1-3) ...
Setting up python3.9-minimal (3.9.7-4) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13195 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ...
Unpacking python3-minimal (3.9.2-3) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_4.0.0_all.deb ...
Unpacking media-types (4.0.0) ...
Selecting previously unselected package libmpdec3:arm64.
Preparing to unpack .../2-libmpdec3_2.5.1-2_arm64.deb ...
Unpacking libmpdec3:arm64 (2.5.1-2) ...
Selecting previously unselected package libncursesw6:arm64.
Preparing to unpack .../3-libncursesw6_6.2+20210905-1_arm64.deb ...
Unpacking libncursesw6:arm64 (6.2+20210905-1) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../4-readline-common_8.1-2_all.deb ...
Unpacking readline-common (8.1-2) ...
Selecting previously unselected package libreadline8:arm64.
Preparing to unpack .../5-libreadline8_8.1-2_arm64.deb ...
Unpacking libreadline8:arm64 (8.1-2) ...
Selecting previously unselected package libsqlite3-0:arm64.
Preparing to unpack .../6-libsqlite3-0_3.36.0-2_arm64.deb ...
Unpacking libsqlite3-0:arm64 (3.36.0-2) ...
Selecting previously unselected package libpython3.9-stdlib:arm64.
Preparing to unpack .../7-libpython3.9-stdlib_3.9.7-4_arm64.deb ...
Unpacking libpython3.9-stdlib:arm64 (3.9.7-4) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../8-python3.9_3.9.7-4_arm64.deb ...
Unpacking python3.9 (3.9.7-4) ...
Selecting previously unselected package libpython3-stdlib:arm64.
Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_arm64.deb ...
Unpacking libpython3-stdlib:arm64 (3.9.2-3) ...
Setting up python3-minimal (3.9.2-3) ...
Selecting previously unselected package python3.
(Reading database ... 13634 files and directories currently installed.)
Preparing to unpack .../000-python3_3.9.2-3_arm64.deb ...
Unpacking python3 (3.9.2-3) ...
Selecting previously unselected package gcc-10-base:amd64.
Preparing to unpack .../001-gcc-10-base_10.3.0-11_amd64.deb ...
Unpacking gcc-10-base:amd64 (10.3.0-11) ...
Selecting previously unselected package gcc-11-base:amd64.
Preparing to unpack .../002-gcc-11-base_11.2.0-10_amd64.deb ...
Unpacking gcc-11-base:amd64 (11.2.0-10) ...
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Setting up liblzma-dev:amd64 (5.2.5-2) ...
Setting up libubsan1:amd64 (11.2.0-10) ...
Setting up libcrypt-dev:amd64 (1:4.4.25-2) ...
Setting up libpbcopper1.8.0:amd64 (1.8.0+dfsg-2+b1) ...
Setting up libssh2-1:amd64 (1.10.0-2) ...
Setting up libkrb5-3:amd64 (1.18.3-7) ...
Setting up libdeflate-dev:amd64 (1.8-1) ...
Setting up libsz2:amd64 (1.0.6-1) ...
Setting up libpsl5:amd64 (0.21.0-1.2) ...
Setting up libhogweed6:amd64 (3.7.3-1) ...
Setting up libgcc-10-dev:amd64 (10.3.0-11) ...
Setting up libaec-dev:amd64 (1.0.6-1) ...
Setting up libgnutls30:amd64 (3.7.2-2) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libgssapi-krb5-2:amd64 (1.18.3-7) ...
Setting up libpbcopper-dev:amd64 (1.8.0+dfsg-2+b1) ...
Setting up libtirpc3:amd64 (1.3.2-2) ...
Setting up libldap-2.4-2:amd64 (2.4.59+dfsg-1) ...
Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+b1) ...
Setting up libcurl4-gnutls-dev:amd64 (7.74.0-1.3+b1) ...
Setting up libtirpc-dev:amd64 (1.3.2-2) ...
Setting up libnsl2:amd64 (1.3.0-2) ...
Setting up libcurl4:amd64 (7.74.0-1.3+b1) ...
Setting up libhts3:amd64 (1.13+ds-2) ...
Setting up libhdf5-103-1:amd64 (1.10.7+repack-4) ...
Setting up libnsl-dev:amd64 (1.3.0-2) ...
Setting up libhdf5-cpp-103-1:amd64 (1.10.7+repack-4) ...
Setting up libc6-dev:amd64 (2.32-4) ...
Setting up libpbbam1.6.0:amd64 (1.6.0+dfsg-2) ...
Setting up libhdf5-hl-100:amd64 (1.10.7+repack-4) ...
Setting up libstdc++-10-dev:amd64 (10.3.0-11) ...
Setting up libboost1.74-dev:amd64 (1.74.0-11) ...
Setting up libhdf5-hl-cpp-100:amd64 (1.10.7+repack-4) ...
Setting up libjpeg62-turbo-dev:amd64 (1:2.0.6-4) ...
Setting up libhdf5-fortran-102:amd64 (1.10.7+repack-4) ...
Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ...
Setting up libhdf5-hl-fortran-100:amd64 (1.10.7+repack-4) ...
Setting up libboost-dev:amd64 (1.74.0.3) ...
Setting up libjpeg-dev:amd64 (1:2.0.6-4) ...
Setting up libhts-dev:amd64 (1.13+ds-2) ...
Setting up libhdf5-dev:amd64 (1.10.7+repack-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpbbam-dev:amd64 (1.6.0+dfsg-2) ...
Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64)
Toolchain package versions: binutils_2.37-7 dpkg-dev_1.20.9 g++-11_11.2.0-10 gcc-11_11.2.0-10 libc6-dev_2.32-4 libstdc++-10-dev_10.3.0-11 libstdc++-11-dev_11.2.0-10 libstdc++-11-dev-amd64-cross_11.2.0-9cross1 libstdc++6_11.2.0-10 libstdc++6-amd64-cross_11.2.0-9cross1 linux-libc-dev_5.14.12-1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-3+b2 binutils_2.37-7 binutils-aarch64-linux-gnu_2.37-7 binutils-common_2.37-7 binutils-x86-64-linux-gnu_2.37-7 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 cmake_3.21.3-5 cmake-data_3.21.3-5 coreutils_8.32-4 cpp_4:11.2.0-2 cpp-11_11.2.0-10 cpp-11-x86-64-linux-gnu_11.2.0-9cross1 cpp-x86-64-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 d-shlibs_0.103 dash_0.5.11+git20210120+802ebd4-2 debconf_1.5.78 debhelper_13.5.2 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-elpa-helper_2.0.9 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 emacsen-common_3.0.4 fakeroot_1.26-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-10 g++-11-x86-64-linux-gnu_11.2.0-9cross1 g++-x86-64-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-11 gcc-11_11.2.0-10 gcc-11-base_11.2.0-10 gcc-11-cross-base_11.2.0-9cross1 gcc-11-x86-64-linux-gnu_11.2.0-9cross1 gcc-11-x86-64-linux-gnu-base_11.2.0-9cross1 gcc-x86-64-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 googletest_1.11.0-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hdf5-helpers_1.10.7+repack-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2+b1 libasan6_11.2.0-10 libasan6-amd64-cross_11.2.0-9cross1 libatomic1_11.2.0-10 libatomic1-amd64-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-7 libblkid1_2.37.2-4 libboost-dev_1.74.0.3 libboost1.74-dev_1.74.0-11 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libc-bin_2.32-4 libc-dev-bin_2.32-4 libc6_2.32-4 libc6-amd64-cross_2.32-1cross4 libc6-dev_2.32-4 libc6-dev-amd64-cross_2.32-1cross4 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-7 libctf0_2.37-7 libcurl3-gnutls_7.74.0-1.3+b1 libcurl4_7.74.0-1.3+b1 libcurl4-gnutls-dev_7.74.0-1.3+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.8-1 libdeflate0_1.8-1 libdpkg-perl_1.20.9 libelf1_0.185-2 libexpat1_2.4.1-3 libfakeroot_1.26-1 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.12.0-2 libfile-which-perl_1.23-1 libgcc-10-dev_10.3.0-11 libgcc-11-dev_11.2.0-10 libgcc-11-dev-amd64-cross_11.2.0-9cross1 libgcc-s1_11.2.0-10 libgcc-s1-amd64-cross_11.2.0-9cross1 libgcrypt20_1.9.4-3+b1 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-10 libglib2.0-0_2.70.0-3 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10 libgomp1-amd64-cross_11.2.0-9cross1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libgtest-dev_1.11.0-2 libhdf5-103-1_1.10.7+repack-4 libhdf5-cpp-103-1_1.10.7+repack-4 libhdf5-dev_1.10.7+repack-4 libhdf5-fortran-102_1.10.7+repack-4 libhdf5-hl-100_1.10.7+repack-4 libhdf5-hl-cpp-100_1.10.7+repack-4 libhdf5-hl-fortran-100_1.10.7+repack-4 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3+b1 libhwasan0_11.2.0-10 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl23_0.24-2 libitm1_11.2.0-10 libitm1-amd64-cross_11.2.0-9cross1 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-10 liblsan0-amd64-cross_11.2.0-9cross1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpbbam-dev_1.6.0+dfsg-2 libpbbam1.6.0_1.6.0+dfsg-2 libpbcopper-dev_1.8.0+dfsg-2+b1 libpbcopper1.8.0_1.8.0+dfsg-2+b1 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.7-4 libpython3.9-stdlib_3.9.7-4 libquadmath0_11.2.0-10 libquadmath0-amd64-cross_11.2.0-9cross1 libreadline8_8.1-2 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libssh2-1_1.10.0-2 libssl-dev_1.1.1l-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11 libstdc++-11-dev_11.2.0-10 libstdc++-11-dev-amd64-cross_11.2.0-9cross1 libstdc++6_11.2.0-10 libstdc++6-amd64-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_249.5-1 libsz2_1.0.6-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-10 libtsan0-amd64-cross_11.2.0-9cross1 libubsan1_11.2.0-10 libubsan1-amd64-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_249.5-1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libuv1_1.42.0-1 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.14.12-1 linux-libc-dev-amd64-cross_5.10.46-4cross4 login_1:4.8.1-1 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 meson_0.60.0-1 mount_2.37.2-4 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 ninja-build_1.10.1-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 python3_3.9.2-3 python3-distutils_3.9.7-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.2-3 python3-pkg-resources_58.2.0-1 python3.9_3.9.7-4 python3.9-minimal_3.9.7-4 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: pbseqlib
Binary: libblasr-dev, libblasr5.3.5, libpbseq, libpbseq-dev, libpbdata-dev, libpbihdf-dev
Architecture: any
Version: 5.3.5+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://github.com/PacificBiosciences/blasr_libcpp
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib
Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git
Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkg-config, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev, libpbcopper-dev, libhts-dev
Package-List:
 libblasr-dev deb libdevel optional arch=any
 libblasr5.3.5 deb libs optional arch=any
 libpbdata-dev deb libdevel optional arch=any
 libpbihdf-dev deb libdevel optional arch=any
 libpbseq deb science optional arch=any
 libpbseq-dev deb libdevel optional arch=any
Checksums-Sha1:
 52e008afcd7a07d4df0a18e2299c8b8e7c480e91 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz
 3709e4534325e20eaae259fa2320e979d5c13ed9 9444 pbseqlib_5.3.5+dfsg-2.debian.tar.xz
Checksums-Sha256:
 81afecd5d7ccb3cd70ed42cd8afa64876fde4c0deee89e1112c7f3b3d6ee8c49 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz
 8f4551e52a0641c03aa65ffeb9c46062808ceece6ad6e7def3f941f4c9019bdd 9444 pbseqlib_5.3.5+dfsg-2.debian.tar.xz
Files:
 53cbc19d8c807640dafbd04fcc47f86e 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz
 eac6b71fa24e681ba621422db0811a61 9444 pbseqlib_5.3.5+dfsg-2.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.5rZwxEkJ/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct  8 13:49:12 2021 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pbseqlib_5.3.5+dfsg-2.dsc
dpkg-source: info: extracting pbseqlib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5-1.10.1-support.patch
dpkg-source: info: applying hdf5-1.10.0-support.patch
dpkg-source: info: applying meson.patch
dpkg-source: info: applying static+shared_lib.patch

Check disk space
----------------

Sufficient free space for build

+------------------------------------------------------------------------------+
| Starting Timed Build Commands                                                |
+------------------------------------------------------------------------------+


ulimit -c
---------

0

I: Finished running 'ulimit -c'.

Finished processing commands.
--------------------------------------------------------------------------------

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmutg
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=crossqa-sid
SCHROOT_CHROOT_NAME=crossqa-sid
SCHROOT_COMMAND=env
SCHROOT_GID=1002
SCHROOT_GROUP=helmutg
SCHROOT_SESSION_ID=crossqa-sid-2a0e173b-ea6a-423c-ab44-6c30e931ce5d
SCHROOT_UID=1002
SCHROOT_USER=helmutg
SHELL=/bin/sh
USER=helmutg

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package pbseqlib
dpkg-buildpackage: info: source version 5.3.5+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
find -name defines.mk -delete
rm -f pbdata/libconfig.h
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu --cross-file /<<BUILDDIR>>/pbseqlib-5.3.5\+dfsg/debian/.debhelper/generated/_source/meson-cross-file.conf
DEPRECATION: c_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: c_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
DEPRECATION: cpp_link_args in the [properties] section of the machine file is deprecated, use the [built-in options] section.
The Meson build system
Version: 0.60.0
Source dir: /<<PKGBUILDDIR>>
Build dir: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
Build type: cross build
Project name: libblasr
Project version: 5.3.5
C++ compiler for the host machine: /usr/bin/x86_64-linux-gnu-g++ (gcc 11.2.0 "x86_64-linux-gnu-g++ (Debian 11.2.0-9) 11.2.0")
C++ linker for the host machine: /usr/bin/x86_64-linux-gnu-g++ ld.bfd 2.37
C++ compiler for the build machine: c++ (gcc 11.2.0 "c++ (Debian 11.2.0-10) 11.2.0")
C++ linker for the build machine: c++ ld.bfd 2.37
Build machine cpu family: aarch64
Build machine cpu: aarch64
Host machine cpu family: x86_64
Host machine cpu: amd64
Target machine cpu family: x86_64
Target machine cpu: amd64
Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES 
Compiler for C++ supports arguments -Wno-unused-variable: YES 
Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES 
Found pkg-config: /usr/bin/x86_64-linux-gnu-pkg-config (0.29.2)
Run-time dependency Boost found: YES 1.74.0 (/usr/include)
Run-time dependency pbbam found: YES 1.6.0
Run-time dependency zlib found: YES 1.2.11
Run-time dependency htslib found: YES 1.13+ds
Library rt found: YES
Run-time dependency HDF5 for cpp found: YES 1.10.7
Configuring LibBlasrConfig.h using configuration
Program tools/check-formatting found: YES (/<<PKGBUILDDIR>>/tools/check-formatting)
Run-time dependency GTest found: YES 1.11.0
Build targets in project: 3

libblasr 5.3.5

  User defined options
    Cross files  : /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/meson-cross-file.conf
    buildtype    : plain
    libdir       : lib/x86_64-linux-gnu
    localstatedir: /var
    prefix       : /usr
    sysconfdir   : /etc
    wrap_mode    : nodownload

Found ninja-1.10.1 at /usr/bin/ninja
   dh_auto_build -a
	cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v
[1/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -c ../hdf/BufferedHDF2DArray.cpp
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:82:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   82 | DEFINE_TYPED_CREATE_ROW(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:83:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   83 | DEFINE_TYPED_CREATE_ROW(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:84:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   84 | DEFINE_TYPED_CREATE_ROW(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned char]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:85:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   85 | DEFINE_TYPED_CREATE_ROW(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short unsigned int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:86:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   86 | DEFINE_TYPED_CREATE_ROW(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short int]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:87:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   87 | DEFINE_TYPED_CREATE_ROW(int16_t, H5::PredType::NATIVE_INT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDF2DArray.cpp: In member function ‘void BufferedHDF2DArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = float]’:
../hdf/BufferedHDF2DArray.cpp:79:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms); \
      |                                                                                        ^
../hdf/BufferedHDF2DArray.cpp:88:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ROW’
   88 | DEFINE_TYPED_CREATE_ROW(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/BufferedHDF2DArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[2/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -c ../hdf/BufferedHDFArray.cpp
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:67:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   67 | DEFINE_TYPED_CREATE_ARRAY(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:68:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   68 | DEFINE_TYPED_CREATE_ARRAY(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = char*]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:69:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   69 | DEFINE_TYPED_CREATE_ARRAY(char *, H5::StrType(0, H5T_VARIABLE))
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned char]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:70:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   70 | DEFINE_TYPED_CREATE_ARRAY(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = unsigned int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:71:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   71 | DEFINE_TYPED_CREATE_ARRAY(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = float]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:72:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   72 | DEFINE_TYPED_CREATE_ARRAY(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = short unsigned int]’:
../hdf/BufferedHDFArray.cpp:64:88: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   64 |         dataset = container->createDataSet(datasetName.c_str(), Pred, fileSpace, cparms);          \
      |                                                                                        ^
../hdf/BufferedHDFArray.cpp:73:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ARRAY’
   73 | DEFINE_TYPED_CREATE_ARRAY(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/BufferedHDFArray.cpp: In member function ‘void BufferedHDFArray<T>::TypedCreate(H5::DataSpace&, H5::DSetCreatPropList&) [with T = std::__cxx11::basic_string<char>]’:
../hdf/BufferedHDFArray.cpp:79:86: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   79 |     dataset = container->createDataSet(datasetName.c_str(), varStrType, space, cparms);
      |                                                                                      ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/BufferedHDFArray.hpp:10,
                 from ../hdf/BufferedHDFArray.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[3/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -MF libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o.d -o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -c ../hdf/DatasetCollection.cpp
[4/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -c ../hdf/HDFAlnGroupGroup.cpp
[5/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -c ../hdf/HDFAlnInfoGroup.cpp
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAlnInfoGroup.cpp:44:23:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAlnInfoGroup.hpp:10,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDF2DArray.hpp:4,
                 from ../hdf/HDFAlnInfoGroup.hpp:8,
                 from ../hdf/HDFAlnInfoGroup.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[6/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -c ../hdf/HDFAtom.cpp
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::Create(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:9:92: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
    9 |     attribute = object.createAttribute(atomName.c_str(), strType, H5::DataSpace(H5S_SCALAR));
      |                                                                                            ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:20:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   20 | DEFINE_TYPED_CREATE_ATOM(int, H5::PredType::NATIVE_INT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:21:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   21 | DEFINE_TYPED_CREATE_ATOM(unsigned int, H5::PredType::NATIVE_UINT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:22:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   22 | DEFINE_TYPED_CREATE_ATOM(unsigned char, H5::PredType::NATIVE_UINT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:23:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   23 | DEFINE_TYPED_CREATE_ATOM(char, H5::PredType::NATIVE_INT8)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:24:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   24 | DEFINE_TYPED_CREATE_ATOM(float, H5::PredType::NATIVE_FLOAT)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:25:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   25 | DEFINE_TYPED_CREATE_ATOM(uint16_t, H5::PredType::NATIVE_UINT16)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
../hdf/HDFAtom.cpp: In member function ‘void HDFAtom<T>::TypedCreate(H5::H5Object&, const string&, H5::DataSpace&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:17:90: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   17 |         attribute = object.createAttribute(atomName.c_str(), (predtype), defaultDataSpace); \
      |                                                                                          ^
../hdf/HDFAtom.cpp:26:1: note: in expansion of macro ‘DEFINE_TYPED_CREATE_ATOM’
   26 | DEFINE_TYPED_CREATE_ATOM(uint64_t, H5::PredType::STD_I64LE)
      | ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:174:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:175:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:176:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = unsigned char; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:177:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = long unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:178:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:179:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:180:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:181:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<unsigned int>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:182:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:51:23: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   51 |             attribute = object.openAttribute(attributeName.c_str());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5File&, const string&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:65:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   65 |         attribute = group.group.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:84:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   84 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(0, NULL));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, std::vector<int>&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:93:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   93 |         attribute = object.createAttribute(name.c_str(), H5::PredType::NATIVE_INT,
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   94 |                                            H5::DataSpace(1, &length));
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFAtom.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.cpp:183:16:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFAtom.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[7/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -c ../hdf/HDFAttributable.cpp
[8/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -c ../hdf/HDFBaseCallsWriter.cpp
In file included from ../hdf/HDFBaseCallsWriter.hpp:11,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFBaseCallsWriter.hpp:11,
                 from ../hdf/HDFBaseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[9/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -c ../hdf/HDFBaxWriter.cpp
[10/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -c ../hdf/HDFCmpExperimentGroup.cpp
[11/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -c ../hdf/HDFCmpSupportedFields.cpp
[12/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFData.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -c ../hdf/HDFData.cpp
../hdf/HDFData.cpp: In member function ‘int HDFData::BaseInitializeDataset(H5::Group&, const string&)’:
../hdf/HDFData.cpp:37:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   37 |     dataset = hdfFile.openDataSet(_datasetName.c_str());
      |                                                       ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/HDFData.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
../hdf/HDFData.cpp: In member function ‘int HDFData::InitializeDataset(H5::Group&, const string&)’:
../hdf/HDFData.cpp:52:59: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy]
   52 |         dataset = hdfFile.openDataSet(_datasetName.c_str());
      |                                                           ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:45,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/HDFData.cpp:1:
/usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’
  100 |         DataSet(const DataSet& original);
      |         ^~~~~~~
[13/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -c ../hdf/HDFFile.cpp
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:34:75: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy]
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:48,
                 from ../hdf/HDFFile.hpp:8,
                 from ../hdf/HDFFile.cpp:1:
/usr/include/hdf5/serial/H5File.h:101:9: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’
  101 |         H5File(const H5File& original);
      |         ^~~~~~
/usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’:
/usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   25 | class H5_DLLCPP H5File : public Group {
      |                 ^~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:47,
                 from ../hdf/HDFFile.hpp:8,
                 from ../hdf/HDFFile.cpp:1:
/usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   57 |         Group(const Group& original);
      |         ^~~~~
../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’:
../hdf/HDFFile.cpp:34:75: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here
   34 |             hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList);
      |                                                                           ^
[14/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -c ../hdf/HDFGroup.cpp
../hdf/HDFGroup.cpp: In member function ‘int HDFGroup::Initialize(H5::Group&, std::string)’:
../hdf/HDFGroup.cpp:18:47: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy]
   18 |         group = fg.openGroup(groupName.c_str());
      |                                               ^
In file included from /usr/include/hdf5/serial/H5Cpp.h:47,
                 from ../hdf/HDFGroup.hpp:9,
                 from ../hdf/HDFGroup.cpp:1:
/usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’
   57 |         Group(const Group& original);
      |         ^~~~~
[15/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -c ../hdf/HDFNewBasReader.cpp
[16/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -c ../hdf/HDFPulseCallsWriter.cpp
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFPulseCallsWriter.hpp:11,
                 from ../hdf/HDFPulseCallsWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[17/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -c ../hdf/HDFPulseDataFile.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFPulseDataFile.hpp:10,
                 from ../hdf/HDFPulseDataFile.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFPulseDataFile.hpp:7,
                 from ../hdf/HDFPulseDataFile.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[18/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -c ../hdf/HDFPulseH5Writer.cpp
[19/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -c ../hdf/HDFPulseWriter.cpp
[20/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -c ../hdf/HDFRegionsWriter.cpp
../hdf/HDFRegionsWriter.cpp: In member function ‘bool HDFRegionsWriter::Write(const std::vector<RegionAnnotation>&)’:
../hdf/HDFRegionsWriter.cpp:44:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   44 |     for (auto annotation : annotations)
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFWriterBase.hpp:17,
                 from ../hdf/HDFRegionsWriter.hpp:13,
                 from ../hdf/HDFRegionsWriter.cpp:3:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
[21/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -c ../hdf/HDFRegionTableReader.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../hdf/HDFRegionTableReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:45:26:   required from ‘int HDFAtom<T>::Initialize(HDFData&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFRegionTableReader.cpp:31:31:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../hdf/HDFRegionTableReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[22/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -c ../hdf/HDFScanDataReader.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:26:33:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:29:33:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFScanDataReader.cpp:33:39:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../hdf/HDFScanDataReader.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[23/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -c ../hdf/HDFScanDataWriter.cpp
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = short unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataWriter.hpp:10,
                 from ../hdf/HDFScanDataWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[24/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -c ../hdf/HDFUtils.cpp
In file included from /usr/x86_64-linux-gnu/include/c++/11/cassert:44,
                 from ../pbdata/reads/RegionTypeMap.hpp:7,
                 from ../pbdata/reads/RegionAnnotation.hpp:17,
                 from ../pbdata/reads/RegionTable.hpp:17,
                 from ../pbdata/SMRTSequence.hpp:14,
                 from ../hdf/HDFBasReader.hpp:21,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFBasReader.hpp: In instantiation of ‘void T_HDFBasReader<T_Sequence>::GetMinMaxHoleNumber(UInt&, UInt&) [with T_Sequence = FASTASequence; UInt = unsigned int]’:
../hdf/HDFUtils.cpp:41:38:   required from here
../hdf/HDFBasReader.hpp:1233:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
 1233 |         assert(nReads >= 0);
      |                ~~~~~~~^~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = FASTASequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = FASTASequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFUtils.cpp:39:29:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../hdf/HDFUtils.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[25/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -c ../hdf/HDFWriterBase.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFWriterBase.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘void HDFAtom<T>::Create(H5::H5Object&, const string&, const std::vector<std::__cxx11::basic_string<char> >&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFWriterBase.cpp:49:29:   required from here
../hdf/HDFAtom.hpp:103:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
  103 |         attribute = object.createAttribute(name.c_str(), strType, H5::DataSpace(1, &length));
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFWriterBase.hpp:11,
                 from ../hdf/HDFWriterBase.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFWriterBase.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFWriterBase.hpp:11,
                 from ../hdf/HDFWriterBase.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[26/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -c ../hdf/HDFZMWMetricsWriter.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWMetricsWriter.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWMetricsWriter.hpp:6,
                 from ../hdf/HDFZMWMetricsWriter.cpp:3:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[27/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -c ../hdf/HDFZMWReader.cpp
[28/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -c ../hdf/HDFZMWWriter.cpp
In file included from ../hdf/HDFWriterBase.hpp:13,
                 from ../hdf/HDFZMWWriter.hpp:12,
                 from ../hdf/HDFZMWWriter.cpp:5:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/BufferedHDF2DArray.hpp:8,
                 from ../hdf/HDFZMWWriter.hpp:10,
                 from ../hdf/HDFZMWWriter.cpp:5:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[29/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -c ../alignment/algorithms/alignment/sdp/SDPFragment.cpp
[30/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -c ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/x86_64-linux-gnu/include/c++/11/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/x86_64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/x86_64-linux-gnu/include/c++/11/string:41,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:4,
                 from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1:
/usr/x86_64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[31/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -c ../alignment/algorithms/alignment/AlignmentUtils.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/x86_64-linux-gnu/include/c++/11/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/x86_64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/x86_64-linux-gnu/include/c++/11/string:41,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:4,
                 from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1:
/usr/x86_64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[32/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -c ../alignment/algorithms/alignment/BaseScoreFunction.cpp
[33/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -c ../alignment/algorithms/alignment/ExtendAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/x86_64-linux-gnu/include/c++/11/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:9,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/x86_64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/x86_64-linux-gnu/include/c++/11/vector:64,
                 from ../alignment/algorithms/alignment/ExtendAlign.hpp:6,
                 from ../alignment/algorithms/alignment/ExtendAlign.cpp:1:
/usr/x86_64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[34/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -c ../alignment/algorithms/alignment/GuidedAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/x86_64-linux-gnu/include/c++/11/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:11,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/x86_64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/x86_64-linux-gnu/include/c++/11/string:41,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/locale_classes.h:40,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/ios_base.h:41,
                 from /usr/x86_64-linux-gnu/include/c++/11/ios:42,
                 from /usr/x86_64-linux-gnu/include/c++/11/ostream:38,
                 from ../alignment/algorithms/alignment/GuidedAlign.hpp:6,
                 from ../alignment/algorithms/alignment/GuidedAlign.cpp:1:
/usr/x86_64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[35/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -c ../alignment/algorithms/alignment/IDSScoreFunction.cpp
[36/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -c ../alignment/algorithms/alignment/KBandAlign.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/x86_64-linux-gnu/include/c++/11/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:10,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/x86_64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/x86_64-linux-gnu/include/c++/11/vector:64,
                 from ../alignment/algorithms/alignment/KBandAlign.hpp:7,
                 from ../alignment/algorithms/alignment/KBandAlign.cpp:1:
/usr/x86_64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[37/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -c ../alignment/algorithms/alignment/QualityValueScoreFunction.cpp
[38/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -c ../alignment/algorithms/alignment/ScoreMatrices.cpp
[39/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -c ../alignment/algorithms/alignment/StringToScoreMatrix.cpp
[40/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -c ../alignment/algorithms/anchoring/BWTSearch.cpp
[41/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -c ../alignment/algorithms/anchoring/ClusterProbability.cpp
[42/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o -c ../alignment/algorithms/anchoring/Coordinate.cpp
[43/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -c ../alignment/algorithms/anchoring/FindMaxInterval.cpp
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../alignment/datastructures/alignment/Alignment.cpp: In member function ‘void blasr::Alignment::CopyStats(blasr::Alignment&)’:
../alignment/datastructures/alignment/Alignment.cpp:35:47: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   35 |     AlignmentStats::CopyStats((AlignmentStats)rhs);
      |                                               ^~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/datastructures/alignment/Alignment.cpp:2:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
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[63/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -c ../alignment/files/CCSIterator.cpp
[64/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -c ../alignment/files/FragmentCCSIterator.cpp
[65/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -c ../pbdata/FASTASequence.cpp
[66/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -c ../alignment/files/ReaderAgglomerate.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../alignment/files/ReaderAgglomerate.cpp:250:47:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/files/ReaderAgglomerate.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[67/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -c ../alignment/format/CompareSequencesPrinter.cpp
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’:
/usr/x86_64-linux-gnu/include/c++/11/bits/alloc_traits.h:512:17:   required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<blasr::CompSeqAlignment>]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:1192:30:   required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator<blasr::CompSeqAlignment>; std::vector<_Tp, _Alloc>::value_type = blasr::CompSeqAlignment]’
../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29:   required from here
../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy]
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’
  103 |     Alignment &operator=(const Alignment &rhs);
      |                ^~~~~~~~
../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy]
   58 | class Alignment : public AlignmentStats
      |       ^~~~~~~~~
In file included from ../alignment/datastructures/alignment/Alignment.hpp:8,
                 from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’
   19 |     AlignmentStats &operator=(const AlignmentStats &rhs);
      |                     ^~~~~~~~
In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.hpp:7,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here
  209 | class CompSeqAlignment : public Alignment
      |       ^~~~~~~~~~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/x86_64-linux-gnu/bits/c++allocator.h:33,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/allocator.h:46,
                 from /usr/x86_64-linux-gnu/include/c++/11/string:41,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/locale_classes.h:40,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/ios_base.h:41,
                 from /usr/x86_64-linux-gnu/include/c++/11/ios:42,
                 from /usr/x86_64-linux-gnu/include/c++/11/istream:38,
                 from /usr/x86_64-linux-gnu/include/c++/11/fstream:38,
                 from ../alignment/format/CompareSequencesPrinter.hpp:4,
                 from ../alignment/format/CompareSequencesPrinter.cpp:1:
/usr/x86_64-linux-gnu/include/c++/11/ext/new_allocator.h:162:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here
  162 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[68/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -c ../alignment/format/IntervalPrinter.cpp
[69/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -c ../alignment/format/SAMHeaderPrinter.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../alignment/format/SAMHeaderPrinter.hpp:14,
                 from ../alignment/format/SAMHeaderPrinter.cpp:1:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[70/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o -c ../alignment/format/SAMPrinter.cpp
[71/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o -c ../alignment/format/SummaryPrinter.cpp
[72/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -MF libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -c ../alignment/query/PbiFilterZmwGroupQuery.cpp
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In file included from /usr/x86_64-linux-gnu/include/c++/11/cassert:44,
                 from ../alignment/statistics/StatUtils.hpp:5,
                 from ../alignment/simulator/CDFMap.hpp:8,
                 from ../alignment/simulator/LengthHistogram.hpp:8,
                 from ../alignment/simulator/LengthHistogram.cpp:1:
../alignment/simulator/CDFMap.hpp: In instantiation of ‘int CDFMap<T_Data>::SelectRandomValue(T_Data&) [with T_Data = int]’:
../alignment/simulator/LengthHistogram.cpp:27:87:   required from here
../alignment/simulator/CDFMap.hpp:37:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits]
   37 |     assert(cdf.size() >= 0);
      |            ~~~~~~~~~~~^~~~
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[95/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o -MF libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o -c ../pbdata/loadpulses/MetricField.cpp
[96/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -c ../pbdata/loadpulses/MovieAlnIndexLookupTable.cpp
[97/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o -c ../pbdata/metagenome/TitleTable.cpp
[98/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o -MF libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o -c ../pbdata/qvs/BlasrQualityValue.cpp
[99/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o -MF libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o -c ../pbdata/qvs/QualityTransform.cpp
[100/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o -c ../pbdata/reads/AcqParams.cpp
[101/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o -c ../pbdata/reads/BaseFile.cpp
[102/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o -c ../pbdata/reads/HoleXY.cpp
[103/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o -c ../pbdata/reads/PulseBaseCommon.cpp
[104/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -c ../pbdata/reads/PulseFile.cpp
[105/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -c ../pbdata/reads/ReadType.cpp
[106/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -c ../pbdata/reads/RegionAnnotation.cpp
[107/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -c ../pbdata/reads/RegionAnnotations.cpp
../pbdata/reads/RegionAnnotations.cpp: In constructor ‘RegionAnnotations::RegionAnnotations(UInt, const std::vector<RegionAnnotation>&, const std::vector<T_RegionType>&)’:
../pbdata/reads/RegionAnnotations.cpp:14:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   14 |     for (auto annotation : annotations) {
      |                            ^~~~~~~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<RegionAnnotation> RegionAnnotations::RegionAnnotationsOfType(RegionType) const’:
../pbdata/reads/RegionAnnotations.cpp:37:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   37 |         for (auto ra : table_)
      |                        ^~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘RegionAnnotation RegionAnnotations::TheHQRegion() const’:
../pbdata/reads/RegionAnnotations.cpp:65:22: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   65 |         return hqs_[0];
      |                      ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::AdapterIntervals() const’:
../pbdata/reads/RegionAnnotations.cpp:85:34: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
   85 |     for (auto adapter : Adapters()) {
      |                                  ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector<ReadInterval> RegionAnnotations::SubreadIntervals(DNALength, bool, bool) const’:
../pbdata/reads/RegionAnnotations.cpp:103:42: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  103 |             for (auto adapter : Adapters()) {
      |                                          ^
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
../pbdata/reads/RegionAnnotations.cpp:122:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy]
  122 |     for (auto insert : inserts) {
      |                        ^~~~~~~
In file included from ../pbdata/reads/ReadInterval.hpp:4,
                 from ../pbdata/reads/RegionAnnotations.hpp:10,
                 from ../pbdata/reads/RegionAnnotations.cpp:4:
../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’
  115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs)
      |                          ^~~~~~~~~~~~~~~~
[108/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o -c ../pbdata/reads/RegionTable.cpp
[109/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o -c ../pbdata/reads/RegionTypeMap.cpp
[110/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o -c ../pbdata/reads/ScanData.cpp
[111/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -c ../pbdata/reads/ZMWGroupEntry.cpp
[112/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o -c ../pbdata/saf/AlnGroup.cpp
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[118/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o -c ../pbdata/sam/SAMAlignment.cpp
[119/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o -c ../pbdata/sam/SAMHeader.cpp
[120/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o -c ../pbdata/sam/SAMKeywordValuePair.cpp
[121/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o -c ../pbdata/utils/BitUtils.cpp
[122/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -c ../pbdata/utils/SMRTReadUtils.cpp
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[124/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -c ../pbdata/utils/TimeUtils.cpp
[125/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -c ../pbdata/BlasrFASTAReader.cpp
In file included from ../pbdata/FASTAReader.hpp:7,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
../pbdata/FASTASequence.hpp: In instantiation of ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = FASTASequence; _Args = {FASTASequence}]’:
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_uninitialized.h:92:18:   required from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<FASTASequence*>; _ForwardIterator = FASTASequence*; bool _TrivialValueTypes = false]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_uninitialized.h:151:15:   required from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<FASTASequence*>; _ForwardIterator = FASTASequence*]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_uninitialized.h:333:37:   required from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<FASTASequence*>; _ForwardIterator = FASTASequence*; _Tp = FASTASequence]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_uninitialized.h:355:2:   required from ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = std::allocator<FASTASequence>]’
/usr/x86_64-linux-gnu/include/c++/11/bits/vector.tcc:659:48:   required from ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::size_type = long unsigned int]’
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:940:4:   required from ‘void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type) [with _Tp = FASTASequence; _Alloc = std::allocator<FASTASequence>; std::vector<_Tp, _Alloc>::size_type = long unsigned int]’
../pbdata/BlasrFASTAReader.cpp:441:21:   required from here
../pbdata/FASTASequence.hpp:19:7: warning: implicitly-declared ‘constexpr DNASequence::DNASequence(const DNASequence&)’ is deprecated [-Wdeprecated-copy]
   19 | class FASTASequence : public DNASequence
      |       ^~~~~~~~~~~~~
In file included from ../pbdata/FASTASequence.hpp:13,
                 from ../pbdata/FASTAReader.hpp:7,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
../pbdata/DNASequence.hpp:51:18: note: because ‘DNASequence’ has user-provided ‘DNASequence& DNASequence::operator=(const DNASequence&)’
   51 |     DNASequence &operator=(const DNASequence &rhs);
      |                  ^~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/bits/alloc_traits.h:33,
                 from /usr/x86_64-linux-gnu/include/c++/11/ext/alloc_traits.h:34,
                 from /usr/x86_64-linux-gnu/include/c++/11/bits/basic_string.h:40,
                 from /usr/x86_64-linux-gnu/include/c++/11/string:55,
                 from ../pbdata/FASTAReader.hpp:5,
                 from ../pbdata/BlasrFASTAReader.cpp:2:
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_construct.h:109:7: note: synthesized method ‘constexpr FASTASequence::FASTASequence(const FASTASequence&)’ first required here
  109 |     { ::new(static_cast<void*>(__p)) _Tp(std::forward<_Args>(__args)...); }
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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[129/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -MF libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -c ../pbdata/CommandLineParser.cpp
[130/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -c ../pbdata/DNASequence.cpp
[131/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -c ../pbdata/FASTQSequence.cpp
[132/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -c ../pbdata/GFFFile.cpp
[133/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -c ../pbdata/MD5Utils.cpp
[134/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -MF libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -c ../pbdata/NucConversion.cpp
[135/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -c ../pbdata/PackedDNASequence.cpp
[136/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -MF libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -c ../pbdata/ReverseCompressIndex.cpp
[137/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -c ../pbdata/SMRTSequence.cpp
../pbdata/SMRTSequence.cpp: In member function ‘void SMRTSequence::MadeFromSubreadsAsPolymerase(const std::vector<SMRTSequence>&)’:
../pbdata/SMRTSequence.cpp:354:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  354 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
../pbdata/SMRTSequence.cpp:379:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  379 |     for (auto subread : subreads) {
      |                         ^~~~~~~~
../pbdata/SMRTSequence.cpp:208:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  208 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs)
      |               ^~~~~~~~~~~~
[138/187] /usr/bin/x86_64-linux-gnu-g++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -c ../pbdata/StringUtils.cpp
[139/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -c ../unittest/pbdata/saf/MovieInfo_gtest.cpp
[140/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -c ../unittest/pbdata/saf/AlnGroup_gtest.cpp
[141/187] /usr/bin/x86_64-linux-gnu-g++  -o libblasr.so.5.3.5 libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libblasr.so.5.3.5 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wl,-z,relro -Wl,-z,now /usr/lib/x86_64-linux-gnu/libpbbam.so /usr/lib/x86_64-linux-gnu/libpbcopper.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhts.so -lrt /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -Wl,--end-group
[142/187] /usr/bin/meson --internal symbolextractor /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu libblasr.so.5.3.5 libblasr.so.5.3.5 libblasr.so.5.3.5.p/libblasr.so.5.3.5.symbols --cross-host=linux
[143/187] rm -f libblasr.a && /usr/bin/x86_64-linux-gnu-ar csrD libblasr.a libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o
[144/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[145/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -c ../unittest/alignment/files/CCSIterator_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/CCSIterator_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/CCSIterator_gtest.cpp:23:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[146/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -c ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../alignment/files/ReaderAgglomerate.hpp:8,
                 from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[147/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -c ../unittest/pbdata/saf/RefInfo_gtest.cpp
[148/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[149/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMPrinter_gtest.cpp
[150/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMHeaderPrinter_gtest.cpp
[151/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/CmpIndexedStringTable_gtest.cpp
[152/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/AlignmentMap_gtest.cpp
[153/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/SequentialZmwGroupQuery_gtest.cpp
[154/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/PbiFilterZmwGroupQuery_gtest.cpp
[155/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -c ../unittest/alignment/utils/FileUtils_gtest.cpp
[156/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -c ../unittest/alignment/utils/RangeUtils_gtest.cpp
[157/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -c ../unittest/alignment/utils/RegionUtils_gtest.cpp
In file included from ../hdf/HDFRegionTableReader.hpp:11,
                 from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFRegionTableReader.hpp:7,
                 from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[158/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -c ../unittest/hdf/HDFScanDataWriter_gtest.cpp
[159/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -c ../unittest/hdf/HDFCCSReader_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = CCSSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFCCSReader.hpp:93:57:   required from ‘int HDFCCSReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = CCSSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFCCSReader_gtest.cpp:39:5:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFCCSReader.hpp:4,
                 from ../unittest/hdf/HDFCCSReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[160/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -c ../unittest/hdf/HDFZMWReader_gtest.cpp
[161/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -c ../unittest/hdf/HDFPlsReader_gtest.cpp
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFPlsReader.hpp:11,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFPlsReader.hpp:8,
                 from ../unittest/hdf/HDFPlsReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[162/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -c ../unittest/hdf/HDF2DArray_gtest.cpp
[163/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -c ../unittest/hdf/HDFUtils_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../unittest/hdf/HDFUtils_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::vector<std::__cxx11::basic_string<char> >; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../hdf/HDFUtils.hpp:7,
                 from ../unittest/hdf/HDFUtils_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[164/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -c ../unittest/hdf/HDFBasReader_gtest.cpp
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFBasReader.hpp:273:40:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeForReadingBases() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:323:13:   required from ‘int T_HDFBasReader<T_Sequence>::InitializeCommon() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:518:13:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize() [with T_Sequence = SMRTSequence]’
../hdf/HDFBasReader.hpp:581:26:   required from ‘int T_HDFBasReader<T_Sequence>::Initialize(std::string, const H5::FileAccPropList&) [with T_Sequence = SMRTSequence; std::string = std::__cxx11::basic_string<char>]’
../unittest/hdf/HDFBasReader_gtest.cpp:33:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFBasReader.hpp:14,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFData.hpp:6,
                 from ../hdf/DatasetCollection.hpp:9,
                 from ../hdf/HDFBasReader.hpp:11,
                 from ../unittest/hdf/HDFBasReader_gtest.cpp:22:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[165/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -c ../unittest/hdf/HDFScanDataReader_gtest.cpp
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = std::__cxx11::basic_string<char>; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = float; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
In file included from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
../hdf/HDFAtom.hpp: In instantiation of ‘int HDFAtom<T>::Initialize(H5::H5Object&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’:
../hdf/HDFAtom.hpp:40:26:   required from ‘int HDFAtom<T>::Initialize(HDFGroup&, const string&) [with T = unsigned int; std::string = std::__cxx11::basic_string<char>]’
../hdf/HDFAtom.hpp:38:9:   required from here
../hdf/HDFAtom.hpp:33:19: warning: implicitly-declared ‘H5::Attribute& H5::Attribute::operator=(const H5::Attribute&)’ is deprecated [-Wdeprecated-copy]
   33 |         attribute = object.openAttribute(attributeName.c_str());
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/hdf5/serial/H5Cpp.h:34,
                 from ../hdf/HDFAtom.hpp:9,
                 from ../hdf/HDFScanDataReader.hpp:8,
                 from ../unittest/hdf/HDFScanDataReader_gtest.cpp:4:
/usr/include/hdf5/serial/H5Attribute.h:33:9: note: because ‘H5::Attribute’ has user-provided ‘H5::Attribute::Attribute(const H5::Attribute&)’
   33 |         Attribute(const Attribute& original);
      |         ^~~~~~~~~
[166/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -c ../unittest/pbdata/metagenome/TitleTable_gtest.cpp
[167/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -c ../unittest/pbdata/utils/SMRTTitle_gtest.cpp
[168/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -c ../unittest/pbdata/qvs/QualityValueVector_gtest.cpp
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[173/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -c ../unittest/pbdata/StringUtils_gtest.cpp
[174/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -c ../unittest/pbdata/SMRTSequence_gtest.cpp
../unittest/pbdata/SMRTSequence_gtest.cpp: In function ‘SMRTSequence _make_a_smrt_read_(const string&, const UInt&, DNALength, DNALength, const string&, bool, bool, bool, int, int, char, int, char)’:
../unittest/pbdata/SMRTSequence_gtest.cpp:66:12: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
   66 |     return smrt;
      |            ^~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymerase_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  133 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletion_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  192 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletionNoSubstitution_Test::TestBody()’:
../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy]
  246 |     read3.MadeFromSubreadsAsPolymerase({read1, read2});
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24:
../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’
  171 |     SMRTSequence &operator=(const SMRTSequence &rhs);
      |                   ^~~~~~~~
In file included from /usr/x86_64-linux-gnu/include/c++/11/vector:67,
                 from /usr/include/gtest/gtest.h:60,
                 from ../unittest/pbdata/SMRTSequence_gtest.cpp:22:
/usr/x86_64-linux-gnu/include/c++/11/bits/stl_vector.h:625:43: note:   initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator<SMRTSequence>; std::vector<_Tp, _Alloc>::allocator_type = std::allocator<SMRTSequence>]’
  625 |       vector(initializer_list<value_type> __l,
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
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[180/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -c ../unittest/pbdata/FASTQReader_gtest.cpp
[181/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -c ../unittest/pbdata/SeqUtils_gtest.cpp
[182/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -c ../unittest/pbdata/CCSSequence_gtest.cpp
[183/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -c ../unittest/pbdata/utils_gtest.cpp
[184/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -c ../unittest/pbdata/FASTQSequence_gtest.cpp
[185/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -c ../unittest/pbdata/DNASequence_gtest.cpp
[186/187] /usr/bin/x86_64-linux-gnu-g++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -c ../unittest/pbdata/FASTAReader_gtest.cpp
[187/187] /usr/bin/x86_64-linux-gnu-g++  -o unittest/libblasr_unittest unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -Wl,--as-needed -Wl,--no-undefined -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wl,-z,relro -Wl,-z,now '-Wl,-rpath,$ORIGIN/..' -Wl,-rpath-link,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ -Wl,--start-group libblasr.so.5.3.5 /usr/lib/x86_64-linux-gnu/libpbbam.so /usr/lib/x86_64-linux-gnu/libpbcopper.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhts.so -lrt /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libgtest_main.a -lpthread /usr/lib/x86_64-linux-gnu/libgtest.a -Wl,--end-group
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
	cd obj-x86_64-linux-gnu && DESTDIR=/<<BUILDDIR>>/pbseqlib-5.3.5\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install
[0/1] Installing files.
Installing libblasr.so.5.3.5 to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu
Installing libblasr.a to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu
Installing /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/LibBlasrConfig.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDF2DArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/BufferedHDFArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollection.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/DatasetCollectionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDF2DArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAlnInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAtom.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFAttributable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBaseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFBaxWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCCSReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpExperimentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRefAlignmentGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpRootGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCmpSupportedFields.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFCommonFG.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFConfig.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFFileLogGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFMovieInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFNewBasReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPlsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseCallsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseDataFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFPulseWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRefGroupGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRefInfoGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFRegionTableWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFScanDataWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFSentinalFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFSMRTSequenceReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFWriteBuffer.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFWriterBase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWMetricsWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/hdf/HDFZMWWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/hdf
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPColumn.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPFragment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineGuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AffineKBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentFormats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/BaseScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ExtendAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/FullQVAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaper.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GraphPaperImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/GuidedAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/IDSScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/KBandAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/OneGapAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/QualityValueScoreFunction.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/ScoreMatrices.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SDPAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/StringToScoreMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlign.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/alignment/SWAlignImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpoint.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BasicEndpointImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearch.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/BWTSearchImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ClusterProbability.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/Coordinate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChain.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/GlobalChainImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISQValueWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightor.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTree.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchors.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring
Installing /<<PKGBUILDDIR>>/alignment/algorithms/compare/CompareStrings.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/compare
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/DifferenceCovers.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/Karkkainen.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/LightweightSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/MultikeyQuicksort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/algorithms/sorting/qsufsort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting
Installing /<<PKGBUILDDIR>>/alignment/bwt/BWT.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/Occ.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/PackedHash.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/bwt/Pos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/bwt
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignedPair.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentCandidate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentContext.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentGapList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Alignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/AlignmentStats.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/ByteAlignment.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpIndexedStringTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpReadGroupTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/CmpRefSeqTable.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/FilterCriteria.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/Path.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMQVConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/AnchorParameters.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/ClusterList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/MatchPos.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/datastructures/anchoring/WeightedInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring
Installing /<<PKGBUILDDIR>>/alignment/files/BaseSequenceIO.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/CCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/FragmentCCSIterator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerate.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/files/ReaderAgglomerateImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/files
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/BAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/CompareSequencesPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/IntervalPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMHeaderPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SAMPrinterImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/StickAlignmentPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/SummaryPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/VulgarPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/format/XMLPrinter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/format
Installing /<<PKGBUILDDIR>>/alignment/ipc/SharedMemoryAllocator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/ipc
Installing /<<PKGBUILDDIR>>/alignment/query/PbiFilterZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query
Installing /<<PKGBUILDDIR>>/alignment/query/SequentialZmwGroupQuery.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/query
Installing /<<PKGBUILDDIR>>/alignment/qvs/QualityValueProfile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/qvs
Installing /<<PKGBUILDDIR>>/alignment/simulator/CDFMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextOutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/ContextSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/LengthHistogram.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/OutputSampleListSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/simulator/QualitySample.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/simulator
Installing /<<PKGBUILDDIR>>/alignment/statistics/AnchorDistributionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/cdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/LookupAnchorDistribution.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/pdfs.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/StatUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulator.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/statistics/VarianceAccumulatorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/statistics
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/LCPTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SharedSuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/ssort.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArray.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/suffixarray/SuffixArrayTypes.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/suffixarray
Installing /<<PKGBUILDDIR>>/alignment/tuples/BaseTuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/CompressedDNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/CountedTuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATuple.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/DNATupleList.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/HashedTupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleCountTableImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/tuple.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleList.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleListImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMask.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatching.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMatchingImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleOperations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/tuples/TupleTranslations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/tuples
Installing /<<PKGBUILDDIR>>/alignment/utils/FileOfFileNames.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/FileUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/LogUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/PhredUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RangeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/RegionUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/utils/SimpleXMLUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment/utils
Installing /<<PKGBUILDDIR>>/alignment/MappingMetrics.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/alignment
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment
Installing /<<PKGBUILDDIR>>/pbdata/alignment/CmpAlignmentImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/alignment
Installing /<<PKGBUILDDIR>>/pbdata/amos/AfgBasWriter.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/amos
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MetricField.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses
Installing /<<PKGBUILDDIR>>/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/loadpulses
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/FlatMatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/Matrix.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/matrix/MatrixImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/matrix
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/FindRandomSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabase.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/metagenome/TitleTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/metagenome
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityTransform.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValue.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVector.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/qvs/QualityValueVectorImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/qvs
Installing /<<PKGBUILDDIR>>/pbdata/reads/AcqParams.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/BaseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/HoleXY.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseBaseCommon.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/PulseFileImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadInterval.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ReadType.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotation.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionAnnotations.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTable.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/RegionTypeMap.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ScanData.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/reads/ZMWGroupEntry.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/reads
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/AlnInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/MovieInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/saf/RefInfo.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/saf
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSet.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/AlignmentSetImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/CigarString.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReadGroup.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/ReferenceSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMAlignment.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMFlag.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMHeader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePair.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMKeywordValuePairImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/sam/SAMReaderImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/sam
Installing /<<PKGBUILDDIR>>/pbdata/utils/BitUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTReadUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/SMRTTitle.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/utils/TimeUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata/utils
Installing /<<PKGBUILDDIR>>/pbdata/CCSSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/ChangeListID.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CommandLineParser.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Compare4BitCompressed.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/CompressedSequenceImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/defs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/DNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Enumerations.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTAReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTQReader.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/FASTQSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/GFFFile.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/MD5Utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/MD5UtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/NucConversion.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PacBioDefs.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PackedDNASequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/PrettyException.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/ReverseCompressIndex.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SeqUtilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/SMRTSequence.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/StringUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/Types.h to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/utils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/utilsImpl.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/pbdata/VectorUtils.hpp to /<<PKGBUILDDIR>>/debian/tmp/usr/include/libblasr/pbdata
Installing /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/meson-private/libblasr.pc to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -p libpbdata-dev usr/include/libblasr/pbdata		usr/include/pbseq
dh_install -p libpbihdf-dev usr/include/libblasr/hdf		usr/include/pbseq
dh_install -p libblasr-dev  usr/include/libblasr/alignment	usr/include/pbseq
find -L debian/*/usr/include/ -type f -regextype posix-egrep -not -regex '.*(hpp|h)$' -delete
find debian/*/usr/include/ -name "*.mk" -delete
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --exclude-la \
	    --override s/libhdf5_serial_cpp103-dev/libhdf5-dev/ \
	    --override s/libpbbam1.6.0-dev/libpbbam-dev/ \
	    --override s/libpbcopper1.8.0-dev/libpbcopper-dev/ \
	    --movedev debian/tmp/usr/include/libblasr usr/include \
	    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \
	    debian/tmp/usr/lib/*/libblasr.so
Library package automatic movement utility
 --> libhdf5-dev package exists.
 --> libpbbam-dev package exists.
 --> libpbcopper-dev package exists.
set -e
install -d -m 755 debian/libblasr-dev/usr/lib/x86_64-linux-gnu
install -d -m 755 debian/libblasr5.3.5/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/libblasr.a debian/libblasr-dev/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/libblasr.so debian/libblasr-dev/usr/lib/x86_64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libblasr.so.5.3.5 debian/libblasr5.3.5/usr/lib/x86_64-linux-gnu
PKGDEV=libblasr-dev
PKGSHL=libblasr5.3.5
install -d -m 755 debian/libblasr-dev/usr/include
mv debian/tmp/usr/include/libblasr debian/libblasr-dev/usr/include
install -d -m 755 debian/libblasr-dev/usr/lib/x86_64-linux-gnu/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libblasr-dev/usr/lib/x86_64-linux-gnu/pkgconfig
mv debian/libblasr-dev/usr/include/libblasr debian/libblasr-dev/usr/include/pbseq
mv debian/libblasr-dev/usr/include/pbseq/libblasr/LibBlasrConfig.h debian/libblasr-dev/usr/include/pbseq
dh_install
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: package libblasr-dev: substitution variable ${devlibs:Depends} unused, but is defined
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libblasr-dev' in '../libblasr-dev_5.3.5+dfsg-2_amd64.deb'.
dpkg-deb: building package 'libblasr5.3.5' in '../libblasr5.3.5_5.3.5+dfsg-2_amd64.deb'.
dpkg-deb: building package 'libblasr5.3.5-dbgsym' in '../libblasr5.3.5-dbgsym_5.3.5+dfsg-2_amd64.deb'.
dpkg-deb: building package 'libpbseq' in '../libpbseq_5.3.5+dfsg-2_amd64.deb'.
dpkg-deb: building package 'libpbseq-dev' in '../libpbseq-dev_5.3.5+dfsg-2_amd64.deb'.
dpkg-deb: building package 'libpbdata-dev' in '../libpbdata-dev_5.3.5+dfsg-2_amd64.deb'.
dpkg-deb: building package 'libpbihdf-dev' in '../libpbihdf-dev_5.3.5+dfsg-2_amd64.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../pbseqlib_5.3.5+dfsg-2_amd64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-27T00:49:12Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


pbseqlib_5.3.5+dfsg-2_amd64.changes:
------------------------------------

Format: 1.8
Date: Fri, 08 Oct 2021 13:50:37 +0200
Source: pbseqlib
Binary: libblasr-dev libblasr5.3.5 libblasr5.3.5-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev
Built-For-Profiles: cross nocheck
Architecture: amd64
Version: 5.3.5+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libblasr-dev - tools for aligning PacBio reads to target sequences (development
 libblasr5.3.5 - tools for aligning PacBio reads to target sequences
 libpbdata-dev - tools for handling PacBio sequences (development files)
 libpbihdf-dev - tools for handling PacBio hdf5 files (development files)
 libpbseq   - library for analyzing PacBio sequencing data
 libpbseq-dev - library for analyzing PacBio sequencing data (development files)
Changes:
 pbseqlib (5.3.5+dfsg-2) unstable; urgency=medium
 .
   * Source-only upload
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 cb1da1beb336299217ed834b569b8dec 8908124 debug optional libblasr5.3.5-dbgsym_5.3.5+dfsg-2_amd64.deb
 e64321d37a76ad673930886c815378f2 1091772 libs optional libblasr5.3.5_5.3.5+dfsg-2_amd64.deb
 9d482288fb77a90ef8d991c3bfa07dd0 41088 libdevel optional libpbdata-dev_5.3.5+dfsg-2_amd64.deb
 0cd210d7dc0da4f437bf5df32e9ce207 47576 libdevel optional libpbihdf-dev_5.3.5+dfsg-2_amd64.deb
 a4f40cf7250cc577c5fa5f2cef23ea21 5356 libdevel optional libpbseq-dev_5.3.5+dfsg-2_amd64.deb
 e0ee7b515da16f8ae02eaaea9fe5eb4e 5324 science optional libpbseq_5.3.5+dfsg-2_amd64.deb
 91262e510f577afd11bba3fa217ba36d 9149 science optional pbseqlib_5.3.5+dfsg-2_amd64.buildinfo

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: pbseqlib
Binary: libblasr-dev libblasr5.3.5 libblasr5.3.5-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev
Architecture: amd64
Version: 5.3.5+dfsg-2
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Build-Architecture: arm64
Build-Date: Wed, 27 Oct 2021 00:49:11 +0000
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Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1633693837"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libblasr-dev_5.3.5+dfsg-2_amd64.deb
-----------------------------------

 new Debian package, version 2.0.
 size 2066732 bytes: control archive=9480 bytes.
     816 bytes,    20 lines      control              
   45416 bytes,   467 lines      md5sums              
 Package: libblasr-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-2
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 15473
 Depends: libblasr5.3.5 (= 5.3.5+dfsg-2), libpbdata-dev (= 5.3.5+dfsg-2)
 Breaks: libblasr (<< 5.3.3)
 Replaces: libblasr (<< 5.3.3)
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the alignment
  sublibrary.

drwxr-xr-x root/root         0 2021-10-08 11:50 ./
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/
-rw-r--r-- root/root       130 2021-10-08 11:50 ./usr/include/pbseq/LibBlasrConfig.h
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/alignment/
-rw-r--r-- root/root      2868 2021-02-18 09:42 ./usr/include/pbseq/alignment/MappingMetrics.hpp
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/alignment/algorithms/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/alignment/algorithms/alignment/
-rw-r--r-- root/root     21547 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp
-rw-r--r-- root/root     14470 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp
-rw-r--r-- root/root       253 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentFormats.hpp
-rw-r--r-- root/root      5585 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp
-rw-r--r-- root/root     18470 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
-rw-r--r-- root/root       446 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/BaseScoreFunction.hpp
-rw-r--r-- root/root      1664 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
-rw-r--r-- root/root      4641 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
-rw-r--r-- root/root     14955 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/ExtendAlign.hpp
-rw-r--r-- root/root      5694 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/FullQVAlign.hpp
-rw-r--r-- root/root       737 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/GraphPaper.hpp
-rw-r--r-- root/root      4795 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/GraphPaperImpl.hpp
-rw-r--r-- root/root     21551 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp
-rw-r--r-- root/root      5922 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/IDSScoreFunction.hpp
-rw-r--r-- root/root     12931 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp
-rw-r--r-- root/root     12739 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp
-rw-r--r-- root/root      2595 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/QualityValueScoreFunction.hpp
-rw-r--r-- root/root      2536 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp
-rw-r--r-- root/root     26297 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp
-rw-r--r-- root/root       508 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/SWAlign.hpp
-rw-r--r-- root/root     15288 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/SWAlignImpl.hpp
-rw-r--r-- root/root       378 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/ScoreMatrices.hpp
-rw-r--r-- root/root       212 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/StringToScoreMatrix.hpp
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/
-rw-r--r-- root/root       432 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSort.hpp
-rw-r--r-- root/root       509 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp
-rw-r--r-- root/root      7162 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h
-rw-r--r-- root/root       502 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPColumn.hpp
-rw-r--r-- root/root      2931 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPFragment.hpp
-rw-r--r-- root/root      1120 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSet.hpp
-rw-r--r-- root/root      2262 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp
-rw-r--r-- root/root      1377 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp
-rw-r--r-- root/root     10646 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp
-rw-r--r-- root/root      1000 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/alignment/algorithms/anchoring/
-rw-r--r-- root/root      1097 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/BWTSearch.hpp
-rw-r--r-- root/root       484 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/BWTSearchImpl.hpp
-rw-r--r-- root/root      1601 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpoint.hpp
-rw-r--r-- root/root      2371 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/BasicEndpointImpl.hpp
-rw-r--r-- root/root       361 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/ClusterProbability.hpp
-rw-r--r-- root/root      1194 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/Coordinate.hpp
-rw-r--r-- root/root      5936 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/FindMaxInterval.hpp
-rw-r--r-- root/root     33971 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp
-rw-r--r-- root/root      1411 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/GlobalChain.hpp
-rw-r--r-- root/root      7592 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/GlobalChainImpl.hpp
-rw-r--r-- root/root       743 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValue.hpp
-rw-r--r-- root/root      5054 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValueImpl.hpp
-rw-r--r-- root/root      1517 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightor.hpp
-rw-r--r-- root/root      4041 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp
-rw-r--r-- root/root       900 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISQValueWeightor.hpp
-rw-r--r-- root/root       267 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightor.hpp
-rw-r--r-- root/root       360 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp
-rw-r--r-- root/root       818 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp
-rw-r--r-- root/root      3755 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp
-rw-r--r-- root/root      1848 2021-02-18 09:42 ./usr/include/pbseq/alignment/algorithms/anchoring/MapBySuffixArray.hpp
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drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/libblasr/pbdata/metagenome/
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-rw-r--r-- root/root      2429 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/reads/PulseFile.hpp
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-rw-r--r-- root/root      2388 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/reads/ScanData.hpp
-rw-r--r-- root/root       294 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/reads/ZMWGroupEntry.hpp
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drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/libblasr/pbdata/sam/
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-rw-r--r-- root/root      8002 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/sam/SAMReaderImpl.hpp
-rw-r--r-- root/root       532 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utils.hpp
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-rw-r--r-- root/root       523 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utils/SMRTReadUtils.hpp
-rw-r--r-- root/root      1099 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utils/SMRTTitle.hpp
-rw-r--r-- root/root       118 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utils/TimeUtils.hpp
-rw-r--r-- root/root      1269 2021-02-18 09:42 ./usr/include/pbseq/libblasr/pbdata/utilsImpl.hpp
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/lib/x86_64-linux-gnu/
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lrwxrwxrwx root/root         0 2021-10-08 11:50 ./usr/lib/x86_64-linux-gnu/libblasr.so -> libblasr.so.5.3.5
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/lib/x86_64-linux-gnu/pkgconfig/
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drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/libblasr-dev/
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-rw-r--r-- root/root      4767 2021-10-08 11:50 ./usr/share/doc/libblasr-dev/copyright


libblasr5.3.5-dbgsym_5.3.5+dfsg-2_amd64.deb
-------------------------------------------

 new Debian package, version 2.0.
 size 8908124 bytes: control archive=560 bytes.
     417 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: libblasr5.3.5-dbgsym
 Source: pbseqlib
 Version: 5.3.5+dfsg-2
 Auto-Built-Package: debug-symbols
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 9056
 Depends: libblasr5.3.5 (= 5.3.5+dfsg-2)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libblasr5.3.5
 Build-Ids: eebf9da8878e16325273f8343398054471489e2b

drwxr-xr-x root/root         0 2021-10-08 11:50 ./
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/lib/debug/.build-id/ee/
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drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-10-08 11:50 ./usr/share/doc/libblasr5.3.5-dbgsym -> libblasr5.3.5


libblasr5.3.5_5.3.5+dfsg-2_amd64.deb
------------------------------------

 new Debian package, version 2.0.
 size 1091772 bytes: control archive=968 bytes.
     797 bytes,    17 lines      control              
     231 bytes,     3 lines      md5sums              
      45 bytes,     1 lines      shlibs               
      67 bytes,     2 lines      triggers             
 Package: libblasr5.3.5
 Source: pbseqlib
 Version: 5.3.5+dfsg-2
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3234
 Depends: libc6 (>= 2.32), libgcc-s1 (>= 3.4), libhdf5-103-1, libhdf5-cpp-103-1 (>= 1.10.5), libpbbam1.6.0 (>= 1.6.0+dfsg), libpbcopper1.8.0 (>= 1.8.0+dfsg), libstdc++6 (>= 11)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for aligning PacBio reads to target sequences
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the alignment sublibrary.

drwxr-xr-x root/root         0 2021-10-08 11:50 ./
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/lib/x86_64-linux-gnu/
-rw-r--r-- root/root   3292696 2021-10-08 11:50 ./usr/lib/x86_64-linux-gnu/libblasr.so.5.3.5
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/libblasr5.3.5/
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-rw-r--r-- root/root      4767 2021-10-08 11:50 ./usr/share/doc/libblasr5.3.5/copyright


libpbdata-dev_5.3.5+dfsg-2_amd64.deb
------------------------------------

 new Debian package, version 2.0.
 size 41088 bytes: control archive=3032 bytes.
     674 bytes,    17 lines      control              
    6805 bytes,    85 lines      md5sums              
 Package: libpbdata-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-2
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 228
 Depends: libpbcopper-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio sequences (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the pbdata
  sublibrary.

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drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/
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-rw-r--r-- root/root      5024 2021-02-18 09:42 ./usr/include/pbseq/pbdata/DNASequence.hpp
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-rw-r--r-- root/root       512 2021-02-18 09:42 ./usr/include/pbseq/pbdata/FASTQReader.hpp
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-rw-r--r-- root/root       685 2021-02-18 09:42 ./usr/include/pbseq/pbdata/GFFFile.hpp
-rw-r--r-- root/root      4233 2021-02-18 09:42 ./usr/include/pbseq/pbdata/MD5Utils.hpp
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-rw-r--r-- root/root       362 2021-02-18 09:42 ./usr/include/pbseq/pbdata/SeqUtils.hpp
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-rw-r--r-- root/root       725 2021-02-18 09:42 ./usr/include/pbseq/pbdata/Types.h
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-rw-r--r-- root/root       720 2021-02-18 09:42 ./usr/include/pbseq/pbdata/metagenome/TitleTable.hpp
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drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/pbdata/reads/
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-rw-r--r-- root/root       752 2021-02-18 09:42 ./usr/include/pbseq/pbdata/reads/ReadType.hpp
-rw-r--r-- root/root      5799 2021-02-18 09:42 ./usr/include/pbseq/pbdata/reads/RegionAnnotation.hpp
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-rw-r--r-- root/root      1609 2021-02-18 09:42 ./usr/include/pbseq/pbdata/reads/RegionTypeMap.hpp
-rw-r--r-- root/root      2388 2021-02-18 09:42 ./usr/include/pbseq/pbdata/reads/ScanData.hpp
-rw-r--r-- root/root       294 2021-02-18 09:42 ./usr/include/pbseq/pbdata/reads/ZMWGroupEntry.hpp
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/pbdata/saf/
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-rw-r--r-- root/root       367 2021-02-18 09:42 ./usr/include/pbseq/pbdata/saf/MovieInfo.hpp
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-rw-r--r-- root/root       477 2021-02-18 09:42 ./usr/include/pbseq/pbdata/saf/RefInfo.hpp
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/pbdata/sam/
-rw-r--r-- root/root       884 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/AlignmentSet.hpp
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-rw-r--r-- root/root       538 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/CigarString.h
-rw-r--r-- root/root       898 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/ReadGroup.hpp
-rw-r--r-- root/root      1639 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/ReferenceSequence.hpp
-rw-r--r-- root/root      2342 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMAlignment.hpp
-rw-r--r-- root/root       853 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMFlag.h
-rw-r--r-- root/root       420 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMHeader.hpp
-rw-r--r-- root/root      1137 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMKeywordValuePair.hpp
-rw-r--r-- root/root       833 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMKeywordValuePairImpl.hpp
-rw-r--r-- root/root      2346 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMReader.hpp
-rw-r--r-- root/root      8002 2021-02-18 09:42 ./usr/include/pbseq/pbdata/sam/SAMReaderImpl.hpp
-rw-r--r-- root/root       532 2021-02-18 09:42 ./usr/include/pbseq/pbdata/utils.hpp
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-rw-r--r-- root/root       272 2021-02-18 09:42 ./usr/include/pbseq/pbdata/utils/BitUtils.hpp
-rw-r--r-- root/root       523 2021-02-18 09:42 ./usr/include/pbseq/pbdata/utils/SMRTReadUtils.hpp
-rw-r--r-- root/root      1099 2021-02-18 09:42 ./usr/include/pbseq/pbdata/utils/SMRTTitle.hpp
-rw-r--r-- root/root       118 2021-02-18 09:42 ./usr/include/pbseq/pbdata/utils/TimeUtils.hpp
-rw-r--r-- root/root      1269 2021-02-18 09:42 ./usr/include/pbseq/pbdata/utilsImpl.hpp
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/libpbdata-dev/
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-rw-r--r-- root/root      4767 2021-10-08 11:50 ./usr/share/doc/libpbdata-dev/copyright


libpbihdf-dev_5.3.5+dfsg-2_amd64.deb
------------------------------------

 new Debian package, version 2.0.
 size 47576 bytes: control archive=2132 bytes.
     668 bytes,    17 lines      control              
    4158 bytes,    55 lines      md5sums              
 Package: libpbihdf-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-2
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 330
 Depends: libhdf5-dev
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: tools for handling PacBio hdf5 files (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This package contains the header files and static library for the hdf
  sublibrary.

drwxr-xr-x root/root         0 2021-10-08 11:50 ./
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/include/pbseq/hdf/
-rw-r--r-- root/root      5767 2021-10-08 11:50 ./usr/include/pbseq/hdf/BufferedHDF2DArray.hpp
-rw-r--r-- root/root     12469 2021-10-08 11:50 ./usr/include/pbseq/hdf/BufferedHDF2DArrayImpl.hpp
-rw-r--r-- root/root      8257 2021-10-08 11:50 ./usr/include/pbseq/hdf/BufferedHDFArray.hpp
-rw-r--r-- root/root     13367 2021-10-08 11:50 ./usr/include/pbseq/hdf/BufferedHDFArrayImpl.hpp
-rw-r--r-- root/root       970 2021-02-18 09:42 ./usr/include/pbseq/hdf/DatasetCollection.hpp
-rw-r--r-- root/root       967 2021-02-18 09:42 ./usr/include/pbseq/hdf/DatasetCollectionImpl.hpp
-rw-r--r-- root/root       653 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDF2DArray.hpp
-rw-r--r-- root/root      1129 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFAlnGroup.hpp
-rw-r--r-- root/root       481 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFAlnGroupGroup.hpp
-rw-r--r-- root/root      1125 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFAlnInfoGroup.hpp
-rw-r--r-- root/root      2361 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFArray.hpp
-rw-r--r-- root/root      5823 2021-10-08 11:50 ./usr/include/pbseq/hdf/HDFAtom.hpp
-rw-r--r-- root/root       488 2021-10-08 11:50 ./usr/include/pbseq/hdf/HDFAttributable.hpp
-rw-r--r-- root/root     41860 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBasReader.hpp
-rw-r--r-- root/root     13629 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBasWriter.hpp
-rw-r--r-- root/root      6346 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBaseCallsWriter.hpp
-rw-r--r-- root/root      3471 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFBaxWriter.hpp
-rw-r--r-- root/root     11612 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCCSReader.hpp
-rw-r--r-- root/root      1002 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpData.hpp
-rw-r--r-- root/root      2463 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpExperimentGroup.hpp
-rw-r--r-- root/root     37131 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpFile.hpp
-rw-r--r-- root/root     29734 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpReader.hpp
-rw-r--r-- root/root      4075 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpRefAlignmentGroup.hpp
-rw-r--r-- root/root      2186 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpRootGroup.hpp
-rw-r--r-- root/root       226 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCmpSupportedFields.hpp
-rw-r--r-- root/root       128 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFCommonFG.hpp
-rw-r--r-- root/root       174 2021-10-08 11:50 ./usr/include/pbseq/hdf/HDFConfig.hpp
-rw-r--r-- root/root      1465 2021-10-08 11:50 ./usr/include/pbseq/hdf/HDFData.hpp
-rw-r--r-- root/root       733 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFFile.hpp
-rw-r--r-- root/root      1851 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFFileLogGroup.hpp
-rw-r--r-- root/root       703 2021-10-08 11:50 ./usr/include/pbseq/hdf/HDFGroup.hpp
-rw-r--r-- root/root      2262 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFMovieInfoGroup.hpp
-rw-r--r-- root/root       856 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFNewBasReader.hpp
-rw-r--r-- root/root     23141 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPlsReader.hpp
-rw-r--r-- root/root      6703 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPlsWriter.hpp
-rw-r--r-- root/root      7986 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPulseCallsWriter.hpp
-rw-r--r-- root/root      1795 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPulseDataFile.hpp
-rw-r--r-- root/root      3358 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFPulseWriter.hpp
-rw-r--r-- root/root      1920 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRefGroupGroup.hpp
-rw-r--r-- root/root      3006 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRefInfoGroup.hpp
-rw-r--r-- root/root      1333 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRegionTableReader.hpp
-rw-r--r-- root/root      4108 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRegionTableWriter.hpp
-rw-r--r-- root/root      1923 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFRegionsWriter.hpp
-rw-r--r-- root/root      2167 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFSMRTSequenceReader.hpp
-rw-r--r-- root/root      3280 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFScanDataReader.hpp
-rw-r--r-- root/root      2330 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFScanDataWriter.hpp
-rw-r--r-- root/root       484 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFSentinalFile.hpp
-rw-r--r-- root/root      1599 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFUtils.hpp
-rw-r--r-- root/root       928 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFWriteBuffer.hpp
-rw-r--r-- root/root      5105 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFWriterBase.hpp
-rw-r--r-- root/root      2023 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFZMWMetricsWriter.hpp
-rw-r--r-- root/root       991 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFZMWReader.hpp
-rw-r--r-- root/root      3966 2021-02-18 09:42 ./usr/include/pbseq/hdf/HDFZMWWriter.hpp
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/libpbihdf-dev/
-rw-r--r-- root/root      2082 2021-10-08 11:50 ./usr/share/doc/libpbihdf-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2021-10-08 11:50 ./usr/share/doc/libpbihdf-dev/copyright


libpbseq-dev_5.3.5+dfsg-2_amd64.deb
-----------------------------------

 new Debian package, version 2.0.
 size 5356 bytes: control archive=772 bytes.
     770 bytes,    17 lines      control              
     152 bytes,     2 lines      md5sums              
 Package: libpbseq-dev
 Source: pbseqlib
 Version: 5.3.5+dfsg-2
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 14
 Depends: libpbdata-dev (= 5.3.5+dfsg-2), libpbihdf-dev (= 5.3.5+dfsg-2), libblasr-dev (= 5.3.5+dfsg-2)
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data (development files)
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component development files.

drwxr-xr-x root/root         0 2021-10-08 11:50 ./
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/libpbseq-dev/
-rw-r--r-- root/root      2082 2021-10-08 11:50 ./usr/share/doc/libpbseq-dev/changelog.Debian.gz
-rw-r--r-- root/root      4767 2021-10-08 11:50 ./usr/share/doc/libpbseq-dev/copyright


libpbseq_5.3.5+dfsg-2_amd64.deb
-------------------------------

 new Debian package, version 2.0.
 size 5324 bytes: control archive=748 bytes.
     681 bytes,    17 lines      control              
     144 bytes,     2 lines      md5sums              
 Package: libpbseq
 Source: pbseqlib
 Version: 5.3.5+dfsg-2
 Architecture: amd64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 14
 Depends: libblasr5.3.5 (= 5.3.5+dfsg-2)
 Section: science
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/PacificBiosciences/blasr_libcpp
 Description: library for analyzing PacBio sequencing data
  Blasr_libcpp is a library used by blasr and other executables such as
  samtoh5, loadPulses for analyzing PacBio sequences. This library contains
  three sub-libraries, including pbdata, hdf and alignment.
  .
  This is a metapackage that depends on the pbseqlib component shared libraries.

drwxr-xr-x root/root         0 2021-10-08 11:50 ./
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-08 11:50 ./usr/share/doc/libpbseq/
-rw-r--r-- root/root      2082 2021-10-08 11:50 ./usr/share/doc/libpbseq/changelog.Debian.gz
-rw-r--r-- root/root      4767 2021-10-08 11:50 ./usr/share/doc/libpbseq/copyright


lintian
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Setup apt archive
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  lzip lzop patchutils sbuild-build-depends-lintian-dummy:amd64 t1utils unzip
0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded.
Need to get 6664 kB of archives.
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Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B]
Get:2 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB]
Get:3 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-1 [49.3 kB]
Get:4 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.27-2 [540 kB]
Get:5 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.27-2 [883 kB]
Get:6 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-1.1 [14.1 kB]
Get:7 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40 [69.4 kB]
Get:8 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b3 [11.2 kB]
Get:9 http://mirror.einval.org/debian sid/main arm64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:10 http://mirror.einval.org/debian sid/main arm64 libdevel-callchecker-perl arm64 0.008-1+b2 [15.8 kB]
Get:11 http://mirror.einval.org/debian sid/main arm64 libparams-classify-perl arm64 0.015-1+b3 [25.5 kB]
Get:12 http://mirror.einval.org/debian sid/main arm64 libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:13 http://mirror.einval.org/debian sid/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:14 http://mirror.einval.org/debian sid/main arm64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:15 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:16 http://mirror.einval.org/debian sid/main arm64 libvariable-magic-perl arm64 0.62-1+b3 [44.2 kB]
Get:17 http://mirror.einval.org/debian sid/main arm64 libb-hooks-endofscope-perl all 0.25-1 [19.5 kB]
Get:18 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:19 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:20 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get:21 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-3+b7 [36.9 kB]
Get:22 http://mirror.einval.org/debian sid/main arm64 libclone-perl arm64 0.45-1+b1 [15.3 kB]
Get:23 http://mirror.einval.org/debian sid/main arm64 libconfig-tiny-perl all 2.27-1 [17.1 kB]
Get:24 http://mirror.einval.org/debian sid/main arm64 libparams-util-perl arm64 1.102-1+b1 [25.3 kB]
Get:25 http://mirror.einval.org/debian sid/main arm64 libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:26 http://mirror.einval.org/debian sid/main arm64 libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:27 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:28 http://mirror.einval.org/debian sid/main arm64 libconst-fast-perl all 0.014-1.1 [8552 B]
Get:29 http://mirror.einval.org/debian sid/main arm64 libcpanel-json-xs-perl arm64 4.27-1 [126 kB]
Get:30 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:31 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:32 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB]
Get:33 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB]
Get:34 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.002002-1 [37.8 kB]
Get:35 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-2 [36.8 kB]
Get:36 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB]
Get:37 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB]
Get:38 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.01-2 [34.3 kB]
Get:39 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB]
Get:40 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB]
Get:41 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b2 [25.8 kB]
Get:42 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b3 [26.7 kB]
Get:43 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB]
Get:44 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB]
Get:45 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-2 [7448 B]
Get:46 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-2 [8992 B]
Get:47 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB]
Get:48 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-1.1 [318 kB]
Get:49 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB]
Get:50 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-1 [11.6 kB]
Get:51 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB]
Get:52 http://mirror.einval.org/debian sid/main arm64 libio-prompt-tiny-perl all 0.003-1 [9150 B]
Get:53 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB]
Get:54 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB]
Get:55 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB]
Get:56 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB]
Get:57 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.11-1 [15.4 kB]
Get:58 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB]
Get:59 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB]
Get:60 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:61 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:62 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-2 [60.4 kB]
Get:63 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:64 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB]
Get:65 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b1 [170 kB]
Get:66 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:67 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB]
Get:68 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB]
Get:69 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:70 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.118-1 [53.5 kB]
Get:71 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB]
Get:72 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.008-1+b1 [11.8 kB]
Get:73 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1 [46.1 kB]
Get:74 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB]
Get:75 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB]
Get:76 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB]
Get:77 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b2 [27.3 kB]
Get:78 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B]
Get:79 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1 [13.1 kB]
Get:80 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.8-1+b1 [195 kB]
Get:81 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB]
Get:82 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB]
Get:83 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:84 http://mirror.einval.org/debian sid/main arm64 libtype-tiny-perl all 1.012004-1 [351 kB]
Get:85 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB]
Get:86 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.08-1 [90.6 kB]
Get:87 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB]
Get:88 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1 [34.2 kB]
Get:89 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-4 [84.6 kB]
Get:90 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB]
Get:91 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB]
Get:92 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB]
Get:93 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB]
Get:94 http://mirror.einval.org/debian sid/main arm64 lintian all 2.110.0 [1338 kB]
debconf: delaying package configuration, since apt-utils is not installed
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I: Lintian run was successful.

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| Post Build                                                                   |
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| Cleanup                                                                      |
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| Summary                                                                      |
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Build Architecture: arm64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 337360
Build-Time: 1426
Distribution: unstable
Foreign Architectures: amd64
Host Architecture: amd64
Install-Time: 87
Job: pbseqlib_5.3.5+dfsg-2
Lintian: pass
Machine Architecture: arm64
Package: pbseqlib
Package-Time: 1551
Source-Version: 5.3.5+dfsg-2
Space: 337360
Status: successful
Version: 5.3.5+dfsg-2
--------------------------------------------------------------------------------
Finished at 2021-10-27T00:49:12Z
Build needed 00:25:51, 337360k disk space